| Protein classes | CD: | cell division |
| CS: | cell signaling, cell communication | |
| SM: | cell structure, motility | |
| COD: | cell, organism defense | |
| GPE: | gene, protein expression | |
| M: | metabolism |
| Protein | Chicken | Human | Mouse | |||||||||
| Num | Name | Class | Accession | Blast | Accession | LocusID | Locus | Blast | Accession | LocusID | Locus | Blast |
| 410 | chromatin assembly factor 1 p48 | CD | AF097750 | blast | NM_005610 | 5928 | 1 | blast | NM_009030 | 19646 | blast | |
| 544 | Wnt-4 | CS | D31900 | blast | AF316543 | 95909 | 1 | blast | NM_009523 | 22417 | 4 | blast |
| 564 | homeobox protein Mix1 | GPE | U34615 | blast | AF211891 | 83881 | 1 | blast | NM_013729 | 27217 | 1 | blast |
| 71 | neuropilin | CS | D45416 | blast | AF018956 | 8829 | 10p12 | blast | D50086 | 18186 | 8 73.0 cM | blast |
| 112 | chondroitin 6-sulfotransferase | SM | D49915 | blast | AB017915 | 9469 | 10pter-q21.2 | blast | AB008937 | 53374 | 9 C | blast |
| 376 | prosaposin | M | AF108656 | blast | NM_002778 | 5660 | 10q21-q22 | blast | NM_011179 | 19156 | 10 35.0 cM | blast |
| 395 | early growth response 2, KROX20 | GPE | AF291747 | blast | NM_000399 | 1959 | 10q21.1 | blast | BC009093 | 13654 | 10 35.0 cM | blast |
| 414 | CDC2 protein kinase | CD | X16881 | blast | NM_001786 | 983 | 10q21.1 | blast | M38724 | 12534 | 10 38.0 cM | blast |
| 503 | voltage-dependent anion channel (VDAC2) | CS | AF268470 | blast | BC000165 | 7417 | 10q22 | blast | NM_011695 | 22334 | 14 2.5 cM | blast |
| 323 | dimerization cofactor of HNF1 | GPE | AJ005157 | blast | NM_000281 | 5092 | 10q22 | blast | NM_025273 | 13180 | 10 36.0 cM | blast |
| 213 | vinculin | SM | J04126 | blast | M33308 | 7414 | 10q22.1-q23 | blast | BC008520 | 22330 | 14 2.5 cM | blast |
| 10 | PAX2 | GPE | AB026496 | blast | M89470 | 5076 | 10q22.1-q24.3 | blast | X55781 | 18504 | 19 43.0 cM | blast |
| 223 | terminal deoxynucleotidyl transferase | GPE | U06938 | blast | NM_004088 | 1791 | 10q23-q24 | blast | AF316015 | 21673 | 19 39.5 cM | blast |
| 73 | persyn | SM | AF253513 | blast | AF017256 | 6623 | 10q23.2-q23.3 | blast | AF017255 | 20618 | 14 12.5 cM | blast |
| 280 | B cell linker protein | CS | AF089727 | blast | NM_013314 | 29760 | 10q23.2-q23.33 | blast | AF068182 | 17060 | 19 31.0 cM | blast |
| 172 | fibroblast growth factor 8 | CS | U55189 | blast | NM_006119 | 2253 | 10q24 | blast | D12482 | 14179 | 19 45.0 cM | blast |
| 550 | Lyt-10, NFKB2 | GPE | D16367 | blast | S76638 | 4791 | 10q24 | blast | NM_019408 | 18034 | 19 45.75 cM | blast |
| 211 | plasminogen activator, urokinase | COD | J05187 | blast | NM_002658 | 5328 | 10q24 | blast | NM_008873 | 18792 | 14 2.5 cM | blast |
| 260 | CLIM-2 | GPE | AF069991 | blast | AB016485 | 8861 | 10q24-q25 | blast | U89488 | 16825 | 19 46.0 cM | blast |
| 406 | cytosolic aspartate aminotransferase | M | X15636 | blast | M37400 | 2805 | 10q24.1-q25.1 | blast | NM_010324 | 14718 | 19 37.0 cM | blast |
| 64 | GDNF receptor alpha | CS | U90541 | blast | U95847 | 2674 | 10q26 | blast | AB000800 | 14585 | 19 D2-D3 | blast |
| 378 | collapsin response mediator protein 3, CRMP3/ULIP4 | CS | AF249294 | blast | NM_006426 | 10570 | 10q26 | blast | NM_011993 | 26757 | 7 | blast |
| 373 | ubiquitin specific protease 41 (UBP41) | GPE | AF016107 | blast | NM_004205 | 9099 | 11 | blast | NM_016808 | 53376 | blast | |
| 524 | small acidic protein | CS | AF245016 | blast | NM_014267 | 10944 | 11 | blast | NM_019772 | 56372 | blast | |
| 304 | paired type homeodomain protein (Alx-4) | GPE | AF092538 | blast | AJ404888 | 60529 | 11p11.2 | blast | NM_007442 | 11695 | 2 52.0 cM | blast |
| 191 | myosin binding protein C | SM | U00922 | blast | NM_000256 | 4607 | 11p11.2 | blast | AF097333 | 17868 | blast | |
| 246 | rapsyn | CS | AF000138 | blast | NM_005055 | 5913 | 11p11.2-p11.1 | blast | J03962 | 19400 | 2 47.5 cM | blast |
| 218 | LIM homeobox protein 1 | GPE | L35569 | blast | NM_005568 | 3975 | 11p13-p12 | blast | NM_008498 | 16869 | 11 48.0 cM | blast |
| 539 | potassium channel Shaker alpha 4, Kv1.4 | CS | U82365 | blast | NM_002233 | 3739 | 11p14 | blast | NM_021275 | 16492 | 2 61.0 cM | blast |
| 120 | tryptophan hydroxylase | M | U26428 | blast | NM_004179 | 7166 | 11p15.3-p14 | blast | J04758 | 21990 | 7 23.5 cM | blast |
| 90 | lactate dehydrogenase A | M | X53828 | blast | X02152 | 3939 | 11p15.4 | blast | NM_010699 | 16828 | 7 23.5 cM | blast |
| 382 | MyoD1 | GPE | X16189 | blast | NM_002478 | 4654 | 11p15.4 | blast | M18779 | 17927 | 7 23.5 cM | blast |
| 494 | cathepsin D | GPE | S49650 | blast | M11233 | 1509 | 11p15.5 | blast | NM_009983 | 13033 | 4 50.0 cM | blast |
| 561 | tyrosine hydroxylase | CS | AJ251387 | blast | NM_000360 | 7054 | 11p15.5 | blast | NM_009377 | 21823 | 7 69.2 cM | blast |
| 368 | integrin-linked kinase | CS | AF296130 | blast | NM_004517 | 3611 | 11p15.5-p15.4 | blast | BC003737 | 16202 | 7 E1 | blast |
| 227 | mitochondrial carrier homolog 2 | M | AB034953 | blast | AF176008 | 23788 | 11pter-11p15.5 | blast | AF176009 | 56428 | blast | |
| 42 | cyclin D1 | CD | U40844 | blast | BC000076 | 893 | 11q13 | blast | NM_007631 | 12443 | 7 72.3 cM | blast |
| 479 | Yes associated protein YAP65 | CS | X76483 | blast | NM_006106 | 10413 | 11q13 | blast | NM_009534 | 22601 | blast | |
| 515 | CD5 | COD | Y12011 | blast | NM_014207 | 921 | 11q13 | blast | NM_007650 | 12507 | 19 5.0 cM | blast |
| 548 | NF-kB p65 | GPE | D13721 | blast | M62399 | 5970 | 11q13 | blast | M61909 | 19697 | 19 0.5 cM | blast |
| 106 | ferritin H chain protein | COD | Y14698 | blast | M11146 | 2495 | 11q13 | blast | M24509 | 14319 | 19 2.0 cM | blast |
| 363 | requiem | GPE | AF362751 | blast | NM_006268 | 5977 | 11q13 | blast | NM_011262 | 19708 | 19 2.0 cM | blast |
| 392 | fibroblast growth factor 3 | CS | Z47555 | blast | NM_005247 | 2248 | 11q13 | blast | NM_008007 | 14174 | 7 72.4 cM | blast |
| 439 | heat shock protein 47 | COD | X57157 | blast | AB044779 | 872 | 11q13.5 | blast | NM_009825 | 12406 | blast | |
| 545 | Wnt-11 | CS | D31901 | blast | NM_004626 | 7481 | 11q13.5 | blast | NM_009519 | 22411 | 7 48.0 cM | blast |
| 168 | frizzled 4 | CS | AF224316 | blast | NM_012193 | 8322 | 11q14-q21 | blast | NM_008055 | 14366 | 7 44.5 cM | blast |
| 243 | tyrosinase | M | D88349 | blast | M27160 | 7299 | 11q14-q21 | blast | NM_011661 | 22173 | 7 44.0 cM | blast |
| 541 | Mre11 | GPE | AF166094 | blast | AF073362 | 4361 | 11q21 | blast | NM_018736 | 17535 | blast | |
| 429 | AMPA 4 | CS | X89507 | blast | NM_000829 | 2893 | 11q22 | blast | NM_019691 | 14802 | 9 8.0 cM | blast |
| 50 | progesterone receptor | CS | Y00092 | blast | M15716 | 5241 | 11q22-q23 | blast | M68915 | 18667 | 9 | blast |
| 141 | interleukin 18 | CS | AJ277865 | blast | BC007461 | 3606 | 11q22.2-q22.3 | blast | NM_008360 | 16173 | 9 29.0 cM | blast |
| 522 | Thy-1 glycoprotein | CS | L14924 | blast | AF261093 | 7070 | 11q22.3-q23 | blast | NM_009382 | 21838 | 9 26.0 cM | blast |
| 166 | crystallin, alpha B | GPE | U26661 | blast | NM_001885 | 1410 | 11q22.3-q23.1 | blast | M63170 | 12955 | 9 29.0 cM | blast |
| 511 | CD3 epsilon | CS | Y08916 | blast | NM_000733 | 916 | 11q23 | blast | NM_007648 | 12501 | 9 26.0 cM | blast |
| 514 | radixin | SM | AJ249838 | blast | NM_002906 | 5962 | 11q23 | blast | NM_009041 | 19684 | blast | |
| 338 | Oct binding factor 1 | GPE | AB052869 | blast | Z47550 | 5450 | 11q23.1 | blast | U43788 | 18985 | blast | |
| 180 | SM22 alpha | SM | M83105 | blast | D17409 | 6876 | 11q23.2 | blast | U36588 | 21345 | 9 27.0 cM | blast |
| 290 | heat shock cognate 70 | COD | AJ004940 | blast | AF352832 | 3312 | 11q23.3-q25 | blast | NM_031165 | 15481 | 9 24.0 cM | blast |
| 409 | homeodomain transcription factor BARX2 | GPE | AF102555 | blast | AJ243512 | 8538 | 11q25 | blast | NM_013800 | 12023 | blast | |
| 33 | acidic ribosomal phosphoprotein (P0) | GPE | L28704 | blast | M17885 | 6175 | 12 | blast | X15267 | 11837 | blast | |
| 92 | lysozyme | COD | V00428 | blast | M19045 | 4069 | 12 | blast | NM_017372 | 17105 | 10 66.0 cM | blast |
| 500 | synaptotagmin I, p65 | SM | S64957 | blast | M55047 | 6857 | 12cen-q21 | blast | D37792 | 20979 | 10 58.0 cM | blast |
| 396 | parathyroid hormone-related peptide (PTH-RP) | CS | X52131 | blast | NM_002820 | 5744 | 12p12.1-p11.2 | blast | NM_008970 | 19227 | 6 74.0 cM | blast |
| 91 | lactate dehydrogenase B | M | AF069771 | blast | Y00711 | 3945 | 12p12.2-p12.1 | blast | X51905 | 16832 | 6 62.0 cM | blast |
| 217 | islet amyloid polypeptide | CS | L16955 | blast | X14904 | 3375 | 12p12.3-p12.1 | blast | M25389 | 15874 | 6 62.0 cM | blast |
| 41 | GAPDH | M | AF047874 | blast | M33197 | 2597 | 12p13 | blast | M32599 | 14433 | 6 56.0 cM | blast |
| 200 | triosephosphate isomerase | M | M11314 | blast | M10036 | 7167 | 12p13 | blast | NM_009415 | 21991 | 6 60.2 cM | blast |
| 229 | epithelial sodium channel alpha subunit | M | U58475 | blast | NM_001038 | 6337 | 12p13 | blast | AF112185 | 20276 | 6 60.6 cM | blast |
| 32 | CD9 antigen | CS | AB032767 | blast | M38690 | 928 | 12p13 | blast | L08115 | 12527 | 6 58.0 cM | blast |
| 206 | enolase gamma | M | AB004291 | blast | M22349 | 2026 | 12p13 | blast | NM_013509 | 13807 | 6 60.21 cM | blast |
| 445 | matrix GLA protein | SM | Y13903 | blast | NM_000900 | 4256 | 12p13.1-p12.3 | blast | NM_008597 | 17313 | 6 | blast |
| 315 | glucose transporter type 3 | M | M37785 | blast | NM_006931 | 6515 | 12p13.3 | blast | NM_011401 | 20527 | 6 59.0 cM | blast |
| 388 | CD4 | COD | Y12012 | blast | M35160 | 920 | 12pter-p12 | blast | M36850 | 12504 | 6 60.18 cM | blast |
| 75 | vitamin D receptor | CS | AF011356 | blast | J03258 | 7421 | 12q12-q14 | blast | D31969 | 22337 | 5 56.0 cM | blast |
| 464 | retinoic acid receptor gamma | CS | X73973 | blast | M57707 | 5916 | 12q13 | blast | M34475 | 19411 | 15 57.4 cM | blast |
| 151 | 11-cis retinol dehydrogenase | M | AF285079 | blast | U43559 | 5959 | 12q13-q14 | blast | AF013288 | 19682 | 10 72.0 cM | blast |
| 29 | interferon gamma | COD | U27465 | blast | X13274 | 3458 | 12q14 | blast | K00083 | 15978 | 10 67.0 cM | blast |
| 420 | high mobility group protein HMGIC | CD | AF058287 | blast | NM_003483 | 8091 | 12q15 | blast | NM_010441 | 15364 | 10 67.5 cM | blast |
| 549 | dermatan sulphate proteoglycan (PG-Lb) | SM | D10485 | blast | NM_004950 | 1833 | 12q21 | blast | NM_007884 | 13516 | 10 55.0 cM | blast |
| 480 | beta cysteine-rich-protein | GPE | X84264 | blast | NM_001321 | 1466 | 12q21.1 | blast | NM_007792 | 13008 | blast | |
| 331 | keratan sulfate proteoglycan | SM | AF022890 | blast | AF063301 | 11081 | 12q22 | blast | NM_008438 | 16545 | 10 61.0 cM | blast |
| 552 | stem cell factor | COD | D13516 | blast | NM_000899 | 4254 | 12q22 | blast | NM_013598 | 17311 | 10 57.0 cM | blast |
| 451 | nuclear transcription factor NF-YB | GPE | X59713 | blast | NM_006166 | 4801 | 12q22-q23 | blast | NM_010914 | 18045 | 10 43.7 cM | blast |
| 2 | insulin-like growth factor I | CS | M32791 | blast | NM_000618 | 3479 | 12q22-q23 | blast | X04480 | 16000 | 10 48.0 cM | blast |
| 385 | decorin | SM | X63797 | blast | NM_001920 | 1634 | 12q23 | blast | NM_007833 | 13179 | 10 55.0 cM | blast |
| 339 | Ca2+-ATPase (SERCA2) | CS | M66385 | blast | NM_001681 | 488 | 12q23-q24.1 | blast | NM_009722 | 11938 | 5 F | blast |
| 513 | G/T mismatch DNA glycosylase (5-MCDG) | GPE | AF202114 | blast | NM_003211 | 6996 | 12q24.1 | blast | NM_011561 | 21665 | 10 43.0 cM | blast |
| 458 | vanilloid receptor-related osmotically activated channel protein | CS | AF261883 | blast | NM_021625 | 59341 | 12q24.1 | blast | AF263522 | 63873 | blast | |
| 134 | T-box transcription factor Tbx5 | GPE | AF069396 | blast | U89353 | 6910 | 12q24.1 | blast | AF140427 | 21388 | 5 65.0 cM | blast |
| 334 | tumor rejection antigen gp96 (heat shock protein 108) | COD | M14772 | blast | NM_003299 | 7184 | 12q24.2-q24.3 | blast | NM_011631 | 22027 | 10 49.0 cM | blast |
| 443 | ATP-gated cation channel receptor P2X4 | CS | AF218449 | blast | NM_002560 | 5025 | 12q24.32 | blast | AF089751 | 18438 | blast | |
| 93 | sprouty 2 | CS | AF176904 | blast | AF039843 | 10253 | 13 | blast | AF176905 | 24064 | 14 51.0 cM | blast |
| 337 | sin3-associated polypeptide, 18kD (SAP18) | GPE | AB052899 | blast | U96915 | 10284 | 13cen-13q14.2 | blast | NM_009119 | 20220 | blast | |
| 235 | HMG-1 | GPE | Y17968 | blast | BC003378 | 3146 | 13q12 | blast | NM_010439 | 15289 | 5 83.0 cM | blast |
| 542 | translationally controlled tumor protein | SM | D26312 | blast | NM_003295 | 7178 | 13q12-q14 | blast | NM_009429 | 22070 | blast | |
| 241 | TSC-22 | GPE | D49740 | blast | D38585 | 8848 | 13q14 | blast | X62940 | 21807 | 14 42.0 cM | blast |
| 56 | chondromodulin-I | SM | AF138280 | blast | AB006000 | 11061 | 13q14-q21 | blast | U43509 | 16840 | blast | |
| 285 | forkhead protein FKHR | GPE | AF114261 | blast | AF032885 | 2308 | 13q14.1 | blast | AF126056 | 56458 | blast | |
| 538 | tyrosinase-related protein-2 (TYRP2) | M | AF023471 | blast | NM_001922 | 1638 | 13q32 | blast | NM_010024 | 13190 | 14 58.0 cM | blast |
| 116 | ephrin B2 | CS | AF180729 | blast | NM_004093 | 1948 | 13q33 | blast | NM_010111 | 13642 | 8 2.0 cM | blast |
| 371 | peptide transporter PepT1 | M | AY029615 | blast | U21936 | 6564 | 13q33-q34 | blast | AF205540 | 56643 | blast | |
| 298 | virus activating protease (coagulation factor X) | COD | D00844 | blast | NM_000504 | 2159 | 13q34 | blast | NM_007972 | 14058 | 8 7.0 cM | blast |
| 460 | G-protein coupled receptor kinase 1 (GRK1) | CS | AF019766 | blast | NM_002929 | 6011 | 13q34 | blast | NM_011881 | 24013 | blast | |
| 77 | H+ K+ ATPase beta | M | L08047 | blast | M75110 | 496 | 13q34 | blast | NM_009724 | 11945 | 8 4.0 cM | blast |
| 374 | Sox1 | GPE | AB011802 | blast | NM_005986 | 6656 | 13q34 | blast | NM_009233 | 20664 | 8 4.0 cM | blast |
| 62 | estrogen receptor beta | CS | AB036415 | blast | AB006590 | 2100 | 14q | blast | U81451 | 13983 | 12 33.0 cM | blast |
| 271 | defender against cell death 1 (DAD1) | M | U83627 | blast | BC007403 | 1603 | 14q11-q12 | blast | U83628 | 13135 | 14 24.0 cM | blast |
| 278 | PAX9 | GPE | AF039402 | blast | NM_006194 | 5083 | 14q12-q13 | blast | X84000 | 18511 | 12 26.0 cM | blast |
| 230 | brain factor-1 | CS | U47275 | blast | NM_005249 | 2290 | 14q12-q13 | blast | U36760 | 15228 | 12 21.0 cM | blast |
| 273 | Coch-5B2 | CS | AF012252 | blast | AF006740 | 1690 | 14q12-q13 | blast | AF006741 | 12810 | 12 23.0 cM | blast |
| 328 | homeodomain protein NKx2.1 | GPE | AJ223618 | blast | U33749 | 7080 | 14q13 | blast | NM_009385 | 21869 | 12 28.0 cM | blast |
| 66 | hypoxia-inducible factor 1 alpha | GPE | AB013746 | blast | U22431 | 3091 | 14q21-q24 | blast | AF003695 | 15251 | 12 31.0 cM | blast |
| 412 | bone morphogenetic protein 4 | CS | X75915 | blast | NM_001202 | 652 | 14q22-q23 | blast | X56848 | 12159 | 14 15.0 cM | blast |
| 47 | kinectin | SM | U15617 | blast | Z22551 | 3895 | 14q22.1 | blast | L43326 | 16709 | 14 C2 | blast |
| 88 | GTP cyclohydrolase I | M | Z49267 | blast | U19523 | 2643 | 14q22.1-q22.2 | blast | L09737 | 14528 | 14 19.5 cM | blast |
| 265 | OPTX2 | GPE | AF050131 | blast | AJ011785 | 4990 | 14q22.3-q23 | blast | AJ011787 | 20476 | blast | |
| 7 | transforming growth factor beta 3 | CS | M31154 | blast | J03241 | 7043 | 14q24 | blast | M32745 | 21809 | 12 41.0 cM | blast |
| 54 | calmodulin | CS | AF081672 | |||||||||