| Protein classes | CD: | cell division |
| CS: | cell signaling, cell communication | |
| SM: | cell structure, motility | |
| COD: | cell, organism defense | |
| GPE: | gene, protein expression | |
| M: | metabolism |
| Protein | Chicken | Human | Mouse | |||||||||
| Num | Name | Class | Accession | Blast | Accession | LocusID | Locus | Blast | Accession | LocusID | Locus | Blast |
| 111 | translin | GPE | X95074 | blast | NM_004622 | 7247 | 2q21.1 | blast | NM_011650 | 22099 | 1 | blast |
| 564 | homeobox protein Mix1 | GPE | U34615 | blast | AF211891 | 83881 | 1 | blast | NM_013729 | 27217 | 1 | blast |
| 413 | homeodomain protein Prox 1 | GPE | U46563 | blast | NM_002763 | 5629 | 1q32.2-q32.3 | blast | NM_008937 | 19130 | 1 106.3 cM | blast |
| 187 | interleukin 1 receptor, type I | CS | M81846 | blast | NM_000877 | 3554 | 2q12 | blast | NM_008362 | 16177 | 1 19.5 cM | blast |
| 129 | myostatin | CS | AF019621 | blast | AF019627 | 2660 | 2q32.2 | blast | NM_010834 | 17700 | 1 27.8 cM | blast |
| 416 | CD28 antigen | COD | X67915 | blast | NM_006139 | 940 | 2q33 | blast | NM_007642 | 12487 | 1 30.1 cM | blast |
| 169 | frizzled 7 | CS | AF224317 | blast | AB017365 | 8324 | 2q33 | blast | NM_008057 | 14369 | 1 30.1 cM | blast |
| 167 | insulin-like growth factor binding protein 2 | CS | U15086 | blast | M35410 | 3485 | 2q33-q34 | blast | NM_008342 | 16008 | 1 36.1 cM | blast |
| 529 | NRAMP1 | COD | U40598 | blast | D50403 | 6556 | 2q35 | blast | NM_013612 | 18173 | 1 39.2 cM | blast |
| 96 | crystallin, beta A2 | SM | U28145 | blast | AF166331 | 1412 | 2q34-q36 | blast | AJ272227 | 12958 | 1 40.8 cM | blast |
| 212 | villin | SM | J03781 | blast | NM_007127 | 7429 | 2q35-q36 | blast | NM_009509 | 22349 | 1 40.8 cM | blast |
| 85 | inhibin alpha | CS | U48438 | blast | M13981 | 3623 | 2q33-q36 | blast | NM_010564 | 16322 | 1 41.6 cM | blast |
| 456 | nucleolin C23 | GPE | X17199 | blast | NM_005381 | 4691 | 2q12-qter | blast | NM_010880 | 17975 | 1 48.4 cM | blast |
| 251 | homeobox protein GBX2 | CS | AF022151 | blast | AF118452 | 2637 | 2q37 | blast | NM_010262 | 14472 | 1 65.0 cM | blast |
| 244 | chemokine receptor CXCR4 | GPE | AF294794 | blast | NM_003467 | 7852 | 2q21 | blast | NM_009911 | 12767 | 1 67.4 cM | blast |
| 547 | myogenin | GPE | D90157 | blast | BC006347 | 4656 | 1q31-q41 | blast | NM_031189 | 17928 | 1 72.3 cM | blast |
| 332 | prostaglandin G/H synthase | GPE | M64990 | blast | NM_000963 | 5743 | 1q25.2-q25.3 | blast | NM_011198 | 19225 | 1 76.2 cM | blast |
| 255 | lymphotactin | COD | AF006742 | blast | U23772 | 6375 | 1q21-q25 | blast | U15607 | 16963 | 1 87.0 cM | blast |
| 391 | T cell receptor zeta | COD | AJ002317 | blast | J04132 | 919 | 1q22-q23 | blast | J04967 | 12503 | 1 87.2 cM | blast |
| 192 | octamer-binding protein | GPE | M29972 | blast | X13403 | 5451 | 1q22-q23 | blast | X68363 | 18986 | 1 87.2 cM | blast |
| 436 | retinoid X receptor gamma | CS | X58997 | blast | NM_006917 | 6258 | 1q22-q23 | blast | NM_009107 | 20183 | 1 88.1 cM | blast |
| 507 | basic helix-loop-helix protein NSCL1 | GPE | AF086757 | blast | NM_005598 | 4807 | 1q22 | blast | NM_010916 | 18071 | 1 93.4 cM | blast |
| 461 | poly(ADP-ribose) polymerase | GPE | X52690 | blast | M18112 | 142 | 1q41-q42 | blast | NM_007415 | 11545 | 1 98.6 cM | blast |
| 104 | transcription factor AP-2 beta | GPE | AF065140 | blast | NM_003221 | 7021 | 6p12 | blast | NM_009334 | 21419 | 1 A2-A4 | blast |
| 259 | D53 | SM | AY004870 | blast | U44427 | 7164 | 6q22-q23 | blast | AF004428 | 21987 | 10 | blast |
| 17 | estrogen receptor | CS | X03805 | blast | X03635 | 2099 | 6q25.1 | blast | M38651 | 13982 | 10 12.0 cM | blast |
| 417 | myb proto-oncogene | CS | M14129 | blast | AF104863 | 4602 | 6q22-q23 | blast | M12848 | 17863 | 10 16.0 cM | blast |
| 404 | connective tissue growth factor | CS | AJ298335 | blast | NM_001901 | 1490 | 6q23.1 | blast | BC006783 | 14219 | 10 17.0 cM | blast |
| 190 | MARCKS | CS | M31650 | blast | M68956 | 4082 | 6q22.2 | blast | M60474 | 17118 | 10 22.0 cM | blast |
| 58 | connexin 43 | COD | M29003 | blast | M65188 | 2697 | 6q21-q23.2 | blast | M61896 | 14609 | 10 29.0 cM | blast |
| 395 | early growth response 2, KROX20 | GPE | AF291747 | blast | NM_000399 | 1959 | 10q21.1 | blast | BC009093 | 13654 | 10 35.0 cM | blast |
| 376 | prosaposin | M | AF108656 | blast | NM_002778 | 5660 | 10q21-q22 | blast | NM_011179 | 19156 | 10 35.0 cM | blast |
| 323 | dimerization cofactor of HNF1 | GPE | AJ005157 | blast | NM_000281 | 5092 | 10q22 | blast | NM_025273 | 13180 | 10 36.0 cM | blast |
| 414 | CDC2 protein kinase | CD | X16881 | blast | NM_001786 | 983 | 10q21.1 | blast | M38724 | 12534 | 10 38.0 cM | blast |
| 44 | macrophage migration inhibitory factor | CS | M95776 | blast | M25639 | 4282 | 22q11.23 | blast | NM_010798 | 17319 | 10 40.9 cM | blast |
| 559 | collagen alpha 1 type VI | SM | J04598 | blast | NM_001848 | 1291 | 21q22.3 | blast | NM_009933 | 12833 | 10 41.1 cM | blast |
| 383 | collagen alpha 2 type VI | SM | X15041 | blast | NM_001849 | 1292 | 21q22.3 | blast | X62332 | 12834 | 10 41.1 cM | blast |
| 136 | integrin beta 2 (CD18) | SM | X71786 | blast | NM_000211 | 3689 | 21q22.3 | blast | NM_008404 | 16414 | 10 41.5 cM | blast |
| 513 | G/T mismatch DNA glycosylase (5-MCDG) | GPE | AF202114 | blast | NM_003211 | 6996 | 12q24.1 | blast | NM_011561 | 21665 | 10 43.0 cM | blast |
| 228 | anti-Mullerian hormone | CS | U61754 | blast | NM_000479 | 268 | 19p13.3 | blast | NM_007445 | 11705 | 10 43.0 cM | blast |
| 342 | paralemmin | SM | Y14769 | blast | Y14770 | 5064 | 19p13.3 | blast | NM_023128 | 18483 | 10 43.0 cM | blast |
| 451 | nuclear transcription factor NF-YB | GPE | X59713 | blast | NM_006166 | 4801 | 12q22-q23 | blast | NM_010914 | 18045 | 10 43.7 cM | blast |
| 367 | Eph ligand family-1, ELF-1 | GPE | L40932 | blast | NM_001405 | 1943 | 19p13.3 | blast | U14941 | 13637 | 10 44.0 cM | blast |
| 184 | metalloproteinase inhibitor 3 | CS | M94531 | blast | U14394 | 7078 | 22q12.3 | blast | L27424 | 21859 | 10 47.0 cM | blast |
| 2 | insulin-like growth factor I | CS | M32791 | blast | NM_000618 | 3479 | 12q22-q23 | blast | X04480 | 16000 | 10 48.0 cM | blast |
| 334 | tumor rejection antigen gp96 (heat shock protein 108) | COD | M14772 | blast | NM_003299 | 7184 | 12q24.2-q24.3 | blast | NM_011631 | 22027 | 10 49.0 cM | blast |
| 549 | dermatan sulphate proteoglycan (PG-Lb) | SM | D10485 | blast | NM_004950 | 1833 | 12q21 | blast | NM_007884 | 13516 | 10 55.0 cM | blast |
| 385 | decorin | SM | X63797 | blast | NM_001920 | 1634 | 12q23 | blast | NM_007833 | 13179 | 10 55.0 cM | blast |
| 552 | stem cell factor | COD | D13516 | blast | NM_000899 | 4254 | 12q22 | blast | NM_013598 | 17311 | 10 57.0 cM | blast |
| 500 | synaptotagmin I, p65 | SM | S64957 | blast | M55047 | 6857 | 12cen-q21 | blast | D37792 | 20979 | 10 58.0 cM | blast |
| 331 | keratan sulfate proteoglycan | SM | AF022890 | blast | AF063301 | 11081 | 12q22 | blast | NM_008438 | 16545 | 10 61.0 cM | blast |
| 92 | lysozyme | COD | V00428 | blast | M19045 | 4069 | 12 | blast | NM_017372 | 17105 | 10 66.0 cM | blast |
| 29 | interferon gamma | COD | U27465 | blast | X13274 | 3458 | 12q14 | blast | K00083 | 15978 | 10 67.0 cM | blast |
| 420 | high mobility group protein HMGIC | CD | AF058287 | blast | NM_003483 | 8091 | 12q15 | blast | NM_010441 | 15364 | 10 67.5 cM | blast |
| 151 | 11-cis retinol dehydrogenase | M | AF285079 | blast | U43559 | 5959 | 12q13-q14 | blast | AF013288 | 19682 | 10 72.0 cM | blast |
| 143 | histone deacetylase 2 | GPE | AF039752 | blast | NM_001527 | 3066 | 6q21 | blast | NM_008229 | 15182 | 10 B1 | blast |
| 299 | reversion-induced LIM protein (RIL) | CS | AF167295 | blast | AF154335 | 8572 | 5q31.1 | blast | NM_019417 | 30794 | 11 | blast |
| 247 | pancreatic polypeptide | CS | M87294 | blast | NM_000905 | 5539 | 17q21 | blast | AF273768 | 19064 | 11 | blast |
| 162 | connexin 45 | SM | M35044 | blast | U03493 | 10052 | 17 | blast | X63100 | 14615 | 11 | blast |
| 123 | calcium/calmodulin-dependent kinase II beta | SM | AF085249 | blast | AF078803 | 816 | 7p14.3-p14.1 | blast | NM_007595 | 12323 | 11 0.5 cM | blast |
| 446 | chaperonin T-complex protein 1 delta, tcp-1 delta | GPE | AJ251587 | blast | AF026291 | 10575 | 2 | blast | Z31554 | 12464 | 11 13.0 cM | blast |
| 390 | GABA-A receptor alpha-1 | CS | X54244 | blast | NM_000806 | 2554 | 5q34-q35 | blast | NM_010250 | 14394 | 11 19.0 cM | blast |
| 389 | GABA-A receptor gamma-2 | CS | X54944 | blast | NM_000816 | 2566 | 5q31.1-q33.1 | blast | NM_008073 | 14406 | 11 19.0 cM | blast |
| 509 | GABA-A receptor alpha 6 | CS | X94343 | blast | NM_000811 | 2559 | 5q34 | blast | AF256198 | 14399 | 11 23.0 cM | blast |
| 132 | interferon regulatory factor 1 | GPE | L39766 | blast | X14454 | 3659 | 5q31.1 | blast | M21065 | 16362 | 11 29.0 cM | blast |
| 147 | annexin VI | SM | S67466 | blast | NM_001155 | 309 | 5q32-q34 | blast | NM_013472 | 11749 | 11 29.5 cM | blast |
| 154 | secreted protein acidic rich in cysteine | SM | L24906 | blast | J03040 | 6678 | 5q31.3-q32 | blast | NM_009242 | 20692 | 11 29.9 cM | blast |
| 421 | AMPA 1 | CS | X89510 | blast | NM_000827 | 2890 | 5q31.1 | blast | NM_008165 | 14799 | 11 31.0 cM | blast |
| 432 | Wnt-3a | CS | AB024080 | blast | NM_030753 | 89780 | 1q42 | blast | NM_009522 | 22416 | 11 32.0 cM | blast |
| 270 | eHAND | GPE | U40041 | blast | NM_004821 | 9421 | 5q33 | blast | NM_008213 | 15110 | 11 32.0 cM | blast |
| 459 | nuclear oncoprotein p53 | CD | X13057 | blast | M14694 | 7157 | 17p13.1 | blast | AF161020 | 22059 | 11 39.0 cM | blast |
| 205 | enolase beta | M | D37901 | blast | NM_001976 | 2027 | 17pter-p11 | blast | X62667 | 13808 | 11 42.0 cM | blast |
| 519 | LIS1 | CS | AF113946 | blast | NM_000430 | 5048 | 17p13.3 | blast | NM_013625 | 18472 | 11 44.0 cM | blast |
| 164 | crystallin, beta A3/A1 | SM | M15658 | blast | NM_005208 | 1411 | 17q11.2-q12 | blast | AJ239052 | 12957 | 11 44.71 cM | blast |
| 110 | vitronectin | COD | Y11030 | blast | NM_000638 | 7448 | 17q11 | blast | M77123 | 22370 | 11 45.09 cM | blast |
| 218 | LIM homeobox protein 1 | GPE | L35569 | blast | NM_005568 | 3975 | 11p13-p12 | blast | NM_008498 | 16869 | 11 48.0 cM | blast |
| 124 | noggin | CS | AF057364 | blast | NM_005450 | 9241 | 17q22 | blast | NM_008711 | 18121 | 11 50.5 cM | blast |
| 238 | DNA topoisomerase II alpha | GPE | AB007445 | blast | NM_001067 | 7153 | 17q21-q22 | blast | NM_011623 | 21973 | 11 57.0 cM | blast |
| 466 | retinoic acid receptor alpha | GPE | X73972 | blast | BC008727 | 5914 | 17q12 | blast | X57528 | 19401 | 11 57.8 cM | blast |
| 272 | chromobox homolog 1 (CBX1) | GPE | AB005617 | blast | NM_006807 | 10951 | 17q | blast | NM_007622 | 12412 | 11 58.0 cM | blast |
| 261 | keratin 19 | SM | AB016281 | blast | NM_002276 | 3880 | 17q21 | blast | M28698 | 16669 | 11 58.51 cM | blast |
| 347 | GCN5 | GPE | AB052158 | blast | NM_021078 | 2648 | 17q21 | blast | NM_020004 | 14534 | 11 60.0 cM | blast |
| 534 | 2',3'-cyclic nucleotide 3' phosphodiesterase | CS | AB002144 | blast | NM_033133 | 1267 | 17q21 | blast | M58045 | 12799 | 11 60.0 cM | blast |
| 302 | 17-beta-hydroxysteroid dehydrogenase | GPE | AB002410 | blast | X13440 | 3292 | 17q11-q21 | blast | NM_010475 | 15485 | 11 60.25 cM | blast |
| 324 | breast and ovarian cancer susceptibility-like protein (BRCA1) | GPE | AF355273 | blast | NM_007299 | 672 | 17q21 | blast | U36475 | 12189 | 11 60.5 cM | blast |
| 170 | signal transducer and activator of transcription 5B (Stat5B) | GPE | AF074248 | blast | U48730 | 6777 | 17q11.2 | blast | NM_011489 | 20851 | 11 60.5 cM | blast |
| 322 | erythrocyte anion transport protein (band3) | CS | M23404 | blast | NM_000342 | 6521 | 17q21-q22 | blast | NM_011403 | 20533 | 11 62.0 cM | blast |
| 59 | corticotropin-releasing factor receptor | CS | L41563 | blast | X72304 | 1394 | 17q12-q22 | blast | NM_007762 | 12921 | 11 62.0 cM | blast |
| 67 | inward rectifier potassium channel | COD | AF021141 | blast | AF021139 | 3759 | 17q23.1-q24.2 | blast | AF021136 | 16518 | 11 68.0 cM | blast |
| 137 | integrin beta 3 (CD61) | SM | X72378 | blast | NM_000212 | 3690 | 17q21.32 | blast | AF026509 | 16416 | 11 68.0 cM | blast |
| 100 | arylalkylamine N-acetyltransferase | M | U46502 | blast | NM_001088 | 15 | 17q25 | blast | NM_009591 | 11298 | 11 70.0 cM | blast |
| 183 | metalloproteinase inhibitor 2 | CS | AF004664 | blast | J05593 | 7077 | 17q25 | blast | M82858 | 21858 | 11 72.0 cM | blast |
| 178 | fatty acid synthase | M | J04485 | blast | U26644 | 2194 | 17q25 | blast | AF127033 | 14104 | 11 72.0 cM | blast |
| 52 | growth factor receptor-binding protein 2 | CS | L19258 | blast | NM_002086 | 2885 | 17q24-q25 | blast | NM_008163 | 14784 | 11 75.0 cM | blast |
| 501 | Twist | GPE | AF093816 | blast | NM_000474 | 7291 | 7p21.2 | blast | M63649 | 22160 | 12 16.0 cM | blast |
| 139 | aryl hydrocarbon receptor | CS | AF260832 | blast | NM_001621 | 196 | 7p15 | blast | NM_013464 | 11622 | 12 18.0 cM | blast |
| 521 | ets domain protein ER81 | GPE | AF075707 | blast | NM_004956 | 2115 | 7p22 | blast | NM_007960 | 14009 | 12 18.5 cM | blast |
| 109 | matrilin-3 | SM | AJ000055 | blast | AJ224741 | 4148 | 2p24-p23 | blast | Y10521 | 17182 | 12 2.0 cM | blast |
| 230 | brain factor-1 | CS | U47275 | blast | NM_005249 | 2290 | 14q12-q13 | blast | U36760 | 15228 | 12 21.0 cM | blast |
| 273 | Coch-5B2 | CS | AF012252 | blast | AF006740 | 1690 | 14q12-q13 | blast | AF006741 | 12810 | 12 23.0 cM | blast |
| 278 | PAX9 | GPE | AF039402 | blast | NM_006194 | 5083 | 14q12-q13 | blast | X84000 | 18511 | 12 26.0 cM | blast |
| 328 | homeodomain protein NKx2.1 | GPE | AJ223618 | blast | U33749 | 7080 | 14q13 | blast | NM_009385 | 21869 | 12 28.0 cM | blast |
| 66 | hypoxia-inducible factor 1 alpha | GPE | AB013746 | blast | U22431 | 3091 | 14q21-q24 | blast | AF003695 | 15251 | 12 31.0 cM | blast |
| 62 | estrogen receptor beta | CS | AB036415 | blast | AB006590 | 2100 | 14q | blast | U81451 | 13983 | 12 33.0 cM | blast |
| 318 | fos proto-oncogene | COD | M37000 | blast | NM_005252 | 2353 | 14q24.3 | blast | NM_010234 | 14281 | 12 40.0 cM | blast |
| 447 | 26S ATPase complex subunit 4 | M | U60187 | blast | L02426 | 5700 | 19p13.3 | blast | NM_008947 | 19179 | 12 41.0 cM | blast |
| 7 | transforming growth factor beta 3 | CS | M31154 | blast | J03241 | 7043 | 14q24 | blast | M32745 | 21809 | 12 41.0 cM | blast |
| 87 | creatine kinase B | M | X03509 | blast | L47647 | 1152 | 14q32 | blast | NM_021273 | 12709 | 12 55.0 cM | blast |
| 84 | kinesin light chain | SM | U48359 | blast | L04733 | 3831 | 14q32.3 | blast | AF055665 | 16593 | 12 57.0 cM | blast |
| 314 | Akt1 | CS | AF039943 | blast | BC000479 | 207 | 14q32.32 | blast | NM_009652 | 11651 | 12 57.0 cM | blast |
| 114 | inhibitor of DNA binding 2 | GPE | AF068831 | blast | NM_002166 | 3398 | 2p25 | blast | NM_010496 | 15902 | 12 7.0 cM | blast |
| 221 | M3 muscarinic acetylcholine receptor | CS | L10617 | blast | U29589 | 1131 | 1q41-q44 | blast | AF264050 | 12671 | 13 | blast |
| 364 | T cell receptor gamma | COD | U22666 | blast | M16768 | 6965 | 7p15-p14 | blast | M54996 | 110067 | 13 10.0 cM | blast |
| 117 | inhibin beta A | CS | U42377 | blast | M13436 | 3624 | 7p15-p13 | blast | X69619 | 16323 | 13 10.0 cM | blast |
| 101 | angiotensin II receptor | CS | U76704 | blast | NM_000685 | 185 | 3q21-q25 | blast | S37484 | 11607 | 13 16.0 cM | blast |
| 292 | transcription factor FKH-1 | GPE | Y17794 | blast | NM_001453 | 2296 | 6p25 | blast | NM_008592 | 17300 | 13 20.0 cM | blast |
| 356 | Bar class homeoprotein Barx1b | GPE | AB044371 | blast | AF213356 | 56033 | 9q12 | blast | AJ297677 | 12022 | 13 21.0 cM | blast |
| 348 | spindlin | GPE | ||||||||||