| Protein classes | CD: | cell division |
| CS: | cell signaling, cell communication | |
| SM: | cell structure, motility | |
| COD: | cell, organism defense | |
| GPE: | gene, protein expression | |
| M: | metabolism |
| Protein | Chicken | Human | Mouse | |||||||||
| Num | Name | Class | Accession | Blast | Accession | LocusID | Locus | Blast | Accession | LocusID | Locus | Blast |
| 151 | 11-cis retinol dehydrogenase | M | AF285079 | blast | U43559 | 5959 | 12q13-q14 | blast | AF013288 | 19682 | 10 72.0 cM | blast |
| 302 | 17-beta-hydroxysteroid dehydrogenase | GPE | AB002410 | blast | X13440 | 3292 | 17q11-q21 | blast | NM_010475 | 15485 | 11 60.25 cM | blast |
| 516 | 17-beta-hydroxysteroid dehydrogenase 4 | M | U77911 | blast | NM_000414 | 3295 | 5q21 | blast | NM_008292 | 15488 | blast | |
| 534 | 2',3'-cyclic nucleotide 3' phosphodiesterase | CS | AB002144 | blast | NM_033133 | 1267 | 17q21 | blast | M58045 | 12799 | 11 60.0 cM | blast |
| 267 | 25-hydroxyvitamin D3 24-hydroxylase | M | AF019142 | blast | L13286 | 1591 | 20q13 | blast | D49438 | 13081 | 2 99.0 cM | blast |
| 447 | 26S ATPase complex subunit 4 | M | U60187 | blast | L02426 | 5700 | 19p13.3 | blast | NM_008947 | 19179 | 12 41.0 cM | blast |
| 4 | A3 adenosine receptor | CS | AF115332 | blast | L20463 | 140 | 1p21-p13 | blast | AF069778 | 11542 | 3 55.7 cM | blast |
| 520 | AE2 anion exchanger | M | U48889 | blast | U62531 | blast | NM_009207 | 20535 | 5 14.0 cM | blast | ||
| 421 | AMPA 1 | CS | X89510 | blast | NM_000827 | 2890 | 5q31.1 | blast | NM_008165 | 14799 | 11 31.0 cM | blast |
| 422 | AMPA 2 | CS | X89508 | blast | NM_000826 | 2891 | 4q32-q33 | blast | NM_013540 | 14800 | 3 33.6 cM | blast |
| 424 | AMPA 3 | CS | X89509 | blast | NM_000828 | 2892 | Xq25-q26 | blast | NM_016886 | 53623 | X 13.3 cM | blast |
| 429 | AMPA 4 | CS | X89507 | blast | NM_000829 | 2893 | 11q22 | blast | NM_019691 | 14802 | 9 8.0 cM | blast |
| 377 | ATP receptor P2Y1 | CS | X73268 | blast | NM_002563 | 5028 | 3q24 | blast | NM_008772 | 18441 | blast | |
| 443 | ATP-gated cation channel receptor P2X4 | CS | AF218449 | blast | NM_002560 | 5025 | 12q24.32 | blast | AF089751 | 18438 | blast | |
| 314 | Akt1 | CS | AF039943 | blast | BC000479 | 207 | 14q32.32 | blast | NM_009652 | 11651 | 12 57.0 cM | blast |
| 341 | Axl/Tyro3 receptor tyrosine kinase | CS | U70045 | blast | NM_006293 | 7301 | 15q15.1-q21.1 | blast | U18933 | 22174 | 2 67.1 cM | blast |
| 280 | B cell linker protein | CS | AF089727 | blast | NM_013314 | 29760 | 10q23.2-q23.33 | blast | AF068182 | 17060 | 19 31.0 cM | blast |
| 411 | B-myb | CD | X67505 | blast | X13293 | 4605 | 20q13.1 | blast | X70472 | 17865 | 2 93.0 cM | blast |
| 356 | Bar class homeoprotein Barx1b | GPE | AB044371 | blast | AF213356 | 56033 | 9q12 | blast | AJ297677 | 12022 | 13 21.0 cM | blast |
| 470 | Bcl-2-related ovarian killer protein | CS | AF275944 | blast | NM_032515 | 84558 | blast | NM_016778 | 51800 | blast | ||
| 354 | C/EBP gamma | GPE | U65472 | blast | U20240 | 1054 | 19q13.1 | blast | AB012273 | 12611 | blast | |
| 486 | CBP/p300-interacting transactivator | GPE | AF261079 | blast | NM_006079 | 10370 | 6q23.3 | blast | NM_010828 | 17684 | blast | |
| 416 | CD28 antigen | COD | X67915 | blast | NM_006139 | 940 | 2q33 | blast | NM_007642 | 12487 | 1 30.1 cM | blast |
| 511 | CD3 epsilon | CS | Y08916 | blast | NM_000733 | 916 | 11q23 | blast | NM_007648 | 12501 | 9 26.0 cM | blast |
| 388 | CD4 | COD | Y12012 | blast | M35160 | 920 | 12pter-p12 | blast | M36850 | 12504 | 6 60.18 cM | blast |
| 515 | CD5 | COD | Y12011 | blast | NM_014207 | 921 | 11q13 | blast | NM_007650 | 12507 | 19 5.0 cM | blast |
| 107 | CD8 alpha chain | CS | Z22726 | blast | NM_001768 | 925 | 2p12 | blast | U34881 | 12525 | 6 30.5 cM | blast |
| 108 | CD8 beta chain | CS | Z26484 | blast | M36712 | 926 | 2p12 | blast | NM_009858 | 12526 | 6 30.5 cM | blast |
| 32 | CD9 antigen | CS | AB032767 | blast | M38690 | 928 | 12p13 | blast | L08115 | 12527 | 6 58.0 cM | blast |
| 414 | CDC2 protein kinase | CD | X16881 | blast | NM_001786 | 983 | 10q21.1 | blast | M38724 | 12534 | 10 38.0 cM | blast |
| 253 | CDC37 | GPE | AF035530 | blast | BC000083 | 11140 | 19 | blast | U43076 | 12539 | blast | |
| 256 | CDC42 | CD | U40848 | blast | BC002711 | 998 | 1p36.1 | blast | U37720 | 12540 | 4 66.75 cM | blast |
| 254 | CENP-C | CD | AB004650 | blast | M95724 | 1060 | 4q12-q13.3 | blast | U03113 | 12617 | 5 E2-E5 | blast |
| 260 | CLIM-2 | GPE | AF069991 | blast | AB016485 | 8861 | 10q24-q25 | blast | U89488 | 16825 | 19 46.0 cM | blast |
| 57 | CLOCK | CS | AF132531 | blast | AF011568 | 9575 | 4q12 | blast | AF000998 | 12753 | 5 43.0 cM | blast |
| 155 | COUP-TF II | GPE | U00697 | blast | NM_021005 | 7026 | 15q26 | blast | U07635 | 11819 | 7 33.0 cM | blast |
| 135 | CYP26 (cytochrome P450 retinoid metabolizing protein) | M | AF199462 | blast | NM_000783 | 56603 | 2 | blast | NM_007811 | 13082 | 19 C2-C3 | blast |
| 339 | Ca2+-ATPase (SERCA2) | CS | M66385 | blast | NM_001681 | 488 | 12q23-q24.1 | blast | NM_009722 | 11938 | 5 F | blast |
| 273 | Coch-5B2 | CS | AF012252 | blast | AF006740 | 1690 | 14q12-q13 | blast | AF006741 | 12810 | 12 23.0 cM | blast |
| 400 | CocoaCrisp | CS | AF329199 | blast | NM_031461 | 83690 | 8 | blast | NM_031402 | 83691 | blast | |
| 259 | D53 | SM | AY004870 | blast | U44427 | 7164 | 6q22-q23 | blast | AF004428 | 21987 | 10 | blast |
| 560 | DLX3 | GPE | AJ243432 | blast | NM_005220 | 1747 | 17q21 | blast | NM_010055 | 13393 | blast | |
| 423 | DN p63 alpha | GPE | AB045224 | blast | AF075431 | 8626 | 3q27-q29 | blast | AF075439 | 22061 | 16 19.3 cM | blast |
| 237 | DNA topoisomerase I | GPE | AB000407 | blast | J03250 | 7150 | 20q12-q13.1 | blast | D10061 | 21969 | 2 92.0 cM | blast |
| 238 | DNA topoisomerase II alpha | GPE | AB007445 | blast | NM_001067 | 7153 | 17q21-q22 | blast | NM_011623 | 21973 | 11 57.0 cM | blast |
| 239 | DNA topoisomerase II beta | GPE | AB007446 | blast | X68060 | 7155 | 3p24 | blast | NM_009409 | 21974 | blast | |
| 468 | E2F-1 transcription factor | GPE | X89245 | blast | NM_005225 | 1869 | 20q11.2 | blast | NM_007891 | 13555 | 2 84.0 cM | blast |
| 367 | Eph ligand family-1, ELF-1 | GPE | L40932 | blast | NM_001405 | 1943 | 19p13.3 | blast | U14941 | 13637 | 10 44.0 cM | blast |
| 349 | FK506 bing protein 12, FKBP12 | CD | AB055761 | blast | M80199 | 2280 | 20p13 | blast | NM_008019 | 14225 | 2 | blast |
| 460 | G-protein coupled receptor kinase 1 (GRK1) | CS | AF019766 | blast | NM_002929 | 6011 | 13q34 | blast | NM_011881 | 24013 | blast | |
| 513 | G/T mismatch DNA glycosylase (5-MCDG) | GPE | AF202114 | blast | NM_003211 | 6996 | 12q24.1 | blast | NM_011561 | 21665 | 10 43.0 cM | blast |
| 509 | GABA-A receptor alpha 6 | CS | X94343 | blast | NM_000811 | 2559 | 5q34 | blast | AF256198 | 14399 | 11 23.0 cM | blast |
| 390 | GABA-A receptor alpha-1 | CS | X54244 | blast | NM_000806 | 2554 | 5q34-q35 | blast | NM_010250 | 14394 | 11 19.0 cM | blast |
| 387 | GABA-A receptor beta-3 | CS | X54243 | blast | NM_000814 | 2562 | 15q11.2-q12 | blast | NM_008071 | 14402 | 7 28.6 cM | blast |
| 389 | GABA-A receptor gamma-2 | CS | X54944 | blast | NM_000816 | 2566 | 5q31.1-q33.1 | blast | NM_008073 | 14406 | 11 19.0 cM | blast |
| 41 | GAPDH | M | AF047874 | blast | M33197 | 2597 | 12p13 | blast | M32599 | 14433 | 6 56.0 cM | blast |
| 68 | GARS-AIRS-GART | M | X54200 | blast | X54199 | 2618 | 21q22.11 | blast | U01024 | 14450 | 16 63.0 cM | blast |
| 333 | GATA-1 | GPE | M26209 | blast | NM_002049 | 2623 | Xp11.23 | blast | NM_008089 | 14460 | X 1.9 cM | blast |
| 46 | GATA-6 transcription factor | GPE | U11889 | blast | U66075 | 2627 | 18q11.1-q11.2 | blast | AF179425 | 14465 | 18 3.0 cM | blast |
| 347 | GCN5 | GPE | AB052158 | blast | NM_021078 | 2648 | 17q21 | blast | NM_020004 | 14534 | 11 60.0 cM | blast |
| 64 | GDNF receptor alpha | CS | U90541 | blast | U95847 | 2674 | 10q26 | blast | AB000800 | 14585 | 19 D2-D3 | blast |
| 88 | GTP cyclohydrolase I | M | Z49267 | blast | U19523 | 2643 | 14q22.1-q22.2 | blast | L09737 | 14528 | 14 19.5 cM | blast |
| 532 | GTP-binding protein (rhoA) | CS | AF098513 | blast | BC001360 | 387 | 3p21.3 | blast | AF178961 | 11848 | 2 37.0 cM | blast |
| 537 | GTP-binding protein (rhoB) | CS | AF098515 | blast | NM_004040 | 388 | 2pter-p12 | blast | NM_007483 | 11852 | blast | |
| 536 | GTP-binding protein (rhoC) | CS | AF098514 | blast | BC009177 | 389 | 1p21-p13 | blast | BC004627 | blast | ||
| 357 | Gi2 protein alpha-subunit | CS | L24549 | blast | NM_002070 | 2771 | 3p21 | blast | NM_008138 | 14678 | 9 59.0 cM | blast |
| 77 | H+ K+ ATPase beta | M | L08047 | blast | M75110 | 496 | 13q34 | blast | NM_009724 | 11945 | 8 4.0 cM | blast |
| 235 | HMG-1 | GPE | Y17968 | blast | BC003378 | 3146 | 13q12 | blast | NM_010439 | 15289 | 5 83.0 cM | blast |
| 185 | HMG-17 | GPE | Y00416 | blast | M12623 | 3151 | 1p36.1 | blast | X12944 | 15331 | 4 62.2 cM | blast |
| 186 | HMG-2 | GPE | M83235 | blast | X62534 | 3148 | 4q31 | blast | NM_008252 | 15352 | 8 31.0 cM | blast |
| 434 | HMG2A | GPE | X63463 | blast | NM_005342 | 3149 | Xq28 | blast | NM_008253 | 15354 | blast | |
| 440 | HT7 antigen | CS | X52751 | blast | X64364 | blast | S63813 | blast | ||||
| 526 | Hox-7 | GPE | D10372 | blast | NM_002448 | 4487 | 4p16.3-p16.1 | blast | X59251 | 17701 | 5 21.0 cM | blast |
| 38 | JAK1 | CS | AF096264 | blast | NM_002227 | 3716 | 1p32.3-p31.3 | blast | S63728 | 16451 | 4 46.3 cM | blast |
| 37 | JAK3 | CS | AF034576 | blast | NM_000215 | 3718 | 19p13.1 | blast | L40172 | 16453 | 8 33.0 cM | blast |
| 188 | JUN oncogene | GPE | M57467 | blast | J04111 | 3725 | 1p32-p31 | blast | NM_010591 | 16476 | 4 44.6 cM | blast |
| 43 | KIAA0009 | ? | AF208489 | blast | D13634 | 9650 | 8p22-q21.13 | blast | AF354708 | blast | ||
| 528 | Ku70 | GPE | AB016529 | blast | NM_001469 | 2547 | 22q13.2-q13.31 | blast | AB010282 | 14375 | 15 47.5 cM | blast |
| 355 | LHX3 | GPE | L35570 | blast | AF156888 | 8022 | 9q34.3 | blast | L33776 | 16871 | 2 16.0 cM | blast |
| 454 | LIM domain binding protein CLIM-1 | GPE | AF069990 | blast | AF047337 | 9079 | 4p16 | blast | NM_010698 | 16826 | blast | |
| 218 | LIM homeobox protein 1 | GPE | L35569 | blast | NM_005568 | 3975 | 11p13-p12 | blast | NM_008498 | 16869 | 11 48.0 cM | blast |
| 519 | LIS1 | CS | AF113946 | blast | NM_000430 | 5048 | 17p13.3 | blast | NM_013625 | 18472 | 11 44.0 cM | blast |
| 550 | Lyt-10, NFKB2 | GPE | D16367 | blast | S76638 | 4791 | 10q24 | blast | NM_019408 | 18034 | 19 45.75 cM | blast |
| 546 | M-protein, myomesin 2 | SM | D11474 | blast | NM_003970 | 9172 | 8p23.3 | blast | NM_008664 | 17930 | blast | |
| 221 | M3 muscarinic acetylcholine receptor | CS | L10617 | blast | U29589 | 1131 | 1q41-q44 | blast | AF264050 | 12671 | 13 | blast |
| 190 | MARCKS | CS | M31650 | blast | M68956 | 4082 | 6q22.2 | blast | M60474 | 17118 | 10 22.0 cM | blast |
| 310 | MSSP-1 | COD | AB009975 | blast | NM_016836 | 5937 | 2p14-q14.3 | blast | NM_020296 | 56878 | blast | |
| 79 | Meis2 | GPE | AF199011 | blast | AF178948 | 4212 | 15q11.2 | blast | U57343 | 17536 | 2 64.0 cM | blast |
| 70 | Mel-1a melatonin receptor | CS | U31820 | blast | U14108 | 4543 | 4q35.1 | blast | U52222 | 17773 | 8 25.0 cM | blast |
| 352 | Mitf | GPE | D88363 | blast | NM_000248 | 4286 | 3p14.1-p12.3 | blast | NM_008601 | 17342 | 6 40.0 cM | blast |
| 541 | Mre11 | GPE | AF166094 | blast | AF073362 | 4361 | 11q21 | blast | NM_018736 | 17535 | blast | |
| 382 | MyoD1 | GPE | X16189 | blast | NM_002478 | 4654 | 11p15.4 | blast | M18779 | 17927 | 7 23.5 cM | blast |
| 562 | N-type calcium channel alpha-1B, CACHA1B | CS | AF173012 | blast | NM_000718 | 774 | 9q34 | blast | AF042317 | 12287 | 2 18.0 cM | blast |
| 548 | NF-kB p65 | GPE | D13721 | blast | M62399 | 5970 | 11q13 | blast | M61909 | 19697 | 19 0.5 cM | blast |
| 529 | NRAMP1 | COD | U40598 | blast | D50403 | 6556 | 2q35 | blast | NM_013612 | 18173 | 1 39.2 cM | blast |
| 284 | NUMB | CS | AF176086 | blast | AF108092 | 8650 | 14q24.3 | blast | NM_010949 | 18222 | blast | |
| 425 | Nijmegen breakage syndrome 1 (NBS1) | GPE | AF230342 | blast | NM_002485 | 4683 | 8q21-q24 | blast | NM_013752 | 27354 | 4 A | blast |
| 508 | Nkx-2.5 | GPE | X91838 | blast | AB021133 | 1482 | 5q34 | blast | NM_008700 | 18091 | 17 13.0 cM | blast |
| 265 | OPTX2 | GPE | AF050131 | blast | AJ011785 | 4990 | 14q22.3-q23 | blast | AJ011787 | 20476 | blast | |
| 338 | Oct binding factor 1 | GPE | AB052869 | blast | Z47550 | 5450 | 11q23.1 | blast | U43788 | 18985 | blast | |
| 543 | PAF acetylhydrolase | COD | U34278 | blast | NM_005084 | 7941 | 6p21.2-p12 | blast | BC010726 | 27226 | blast | |
| 10 | PAX2 | GPE | AB026496 | blast | M89470 | 5076 | 10q22.1-q24.3 | blast | X55781 | 18504 | 19 43.0 cM | blast |
| 283 | PAX5 | GPE | AB004249 | blast | NM_016734 | 5079 | 9p13 | blast | M97013 | 18507 | 4 20.7 cM | blast |
| 278 | PAX9 | GPE | AF039402 | blast | NM_006194 | 5083 | 14q12-q13 | blast | X84000 | 18511 | 12 26.0 cM | blast |
| 463 | RAB2 | CS | X84220 | blast | NM_002865 | 5862 | 8p22-q21.3 | blast | NM_021518 | 59021 | blast | |
| 297 | RGS protein RGS-17 | CS | AF151968 | blast | NM_012419 | 115758 | 6 | blast | NM_019958 | 56533 | blast | |
| 372 | RING zinc finger | GPE | X95455 | blast | AF037204 | 11342 | 3q24 | blast | AF037205 | 24017 | blast | |
| 419 | RNA-binding protein HuD | GPE | AF176675 | blast | AY033996 | 1996 | 1p34 | blast | D31953 | 15572 | 4 49.5 cM | blast |
| 499 | Rad51 | COD | L09655 | blast | D14134 | 5888 | 15q15.1 | blast | NM_011234 | 19361 | 2 66.8 cM | blast |
| 150 | RbAp46, retinoblastoma-binding protein | CD | AF279275 | blast | U35143 | 5931 | X | blast | U35142 | 19648 | X | blast |
| 493 | SCG10 protein | SM | L14938 | blast | NM_007029 | 11075 | 8p22-q21.13 | blast | NM_025285 | 20257 | 3 6.6 cM | blast |
| 375 | SCL | GPE | X63371 | blast | NM_003189 | 6886 | 1p32 | blast | NM_011527 | 21349 | 4 49.5 cM | blast |
| 161 | SF-1/Ad4BP | GPE | AB002404 | blast | U76388 | 2516 | 9q33 | blast | AB000490 | 26423 | 2 23.5 cM | blast |
| 465 | SLP-76 adaptor protein (SLP76) | CS | AF226988 | blast | U20158 | 3937 | 5q33.1-qter | blast | U20159 | 16822 | blast | |
| 180 | SM22 alpha | SM | M83105 | blast | D17409 | 6876 | 11q23.2 | blast | U36588 | 21345 | 9 27.0 cM | blast |
| 287 | SMAD6 | CS | AF165889 | blast | AF035528 | 4091 | 15q21-q22 | blast | AF010133 | 17130 | blast | |
| 407 | SOCS box-containing WD protein SWiP-1 | CS | AF072879 | blast | AF072880 | 26118 | 17q11.2 | blast | NM_019653 | 56416 | blast | |
| 527 | Slug | GPE | X77572 | blast | NM_003068 | 6591 | 8q11 | blast | NM_011415 | 20583 | 16 9.4 cM | blast |
| 374 | Sox1 | GPE | AB011802 | |||||||||