| Protein classes | CD: | cell division |
| CS: | cell signaling, cell communication | |
| SM: | cell structure, motility | |
| COD: | cell, organism defense | |
| GPE: | gene, protein expression | |
| M: | metabolism |
| Protein | Chicken | Human | Mouse | |||||||||
| Num | Name | Class | Accession | Blast | Accession | LocusID | Locus | Blast | Accession | LocusID | Locus | Blast |
| 1 | thyroid hormone receptor beta | GPE | X17504 | blast | NM_000461 | 7068 | 3p24.3 | blast | NM_009380 | 21834 | blast | |
| 2 | insulin-like growth factor I | CS | M32791 | blast | NM_000618 | 3479 | 12q22-q23 | blast | X04480 | 16000 | 10 48.0 cM | blast |
| 3 | fibroblast growth factor 2 | CS | M95707 | blast | M27968 | 2247 | 4q26-q27 | blast | AF065905 | 14173 | 3 19.3 cM | blast |
| 4 | A3 adenosine receptor | CS | AF115332 | blast | L20463 | 140 | 1p21-p13 | blast | AF069778 | 11542 | 3 55.7 cM | blast |
| 5 | thyrotropin-releasing hormone receptor | CS | Y18244 | blast | D16845 | 7201 | 8q23 | blast | M94384 | 22045 | 15 24.7 cM | blast |
| 6 | substance P receptor | CS | AF131057 | blast | M84425 | 6869 | 2 | blast | X62934 | 21336 | blast | |
| 7 | transforming growth factor beta 3 | CS | M31154 | blast | J03241 | 7043 | 14q24 | blast | M32745 | 21809 | 12 41.0 cM | blast |
| 8 | platelet-derived growth factor receptor alpha | CS | AF188842 | blast | M21574 | 5156 | 4q11-q13 | blast | M84607 | 18595 | 5 42.0 cM | blast |
| 9 | platelet-derived growth factor alpha | CS | AF188841 | blast | X03795 | 5154 | 7p22 | blast | NM_008808 | 18590 | 5 82.0 cM | blast |
| 10 | PAX2 | GPE | AB026496 | blast | M89470 | 5076 | 10q22.1-q24.3 | blast | X55781 | 18504 | 19 43.0 cM | blast |
| 11 | growth hormone receptor | CS | M74057 | blast | NM_000163 | 2690 | 5p13-p12 | blast | NM_010284 | 14600 | 15 4.6 cM | blast |
| 12 | follicle stimulating hormone receptor | CS | D87871 | blast | NM_000145 | 2492 | 2p21-p16 | blast | AF095642 | 14309 | blast | |
| 13 | melanocortin-5 receptor | CS | AB012868 | blast | L27080 | 4161 | 18p11.2 | blast | U08354 | 17203 | 18 42.0 cM | blast |
| 14 | caspase-6 | CD | AF082329 | blast | BC004460 | 839 | 4q25 | blast | NM_009811 | 12368 | blast | |
| 15 | thyrotropin beta | CS | AF033495 | blast | NM_000549 | 7252 | 1p13 | blast | NM_009432 | 22094 | 3 48.5 cM | blast |
| 16 | caspase-3 | CD | AF083029 | blast | NM_032991 | 836 | 4q34 | blast | U49929 | 12367 | 8 26.0 cM | blast |
| 17 | estrogen receptor | CS | X03805 | blast | X03635 | 2099 | 6q25.1 | blast | M38651 | 13982 | 10 12.0 cM | blast |
| 18 | potassium channel Kv4.3 (KCND3) | M | AF209722 | blast | NM_004980 | 3752 | 1p13.3 | blast | NM_019931 | 56543 | blast | |
| 19 | prolactin receptor | CS | D13154 | blast | NM_000949 | 5618 | 5p14-p13 | blast | NM_011169 | 19116 | 15 4.6 cM | blast |
| 20 | vascular endothelial growth factor | CS | AB011078 | blast | NM_003376 | 7422 | 6p12 | blast | NM_009505 | 22339 | 17 24.2 cM | blast |
| 21 | ribosomal protein S6 kinase | GPE | M28488 | blast | L07597 | 6195 | 3 | blast | M28489 | 20111 | blast | |
| 22 | ribosomal protein S4 | GPE | L24368 | blast | M58458 | 6191 | Xq13.1 | blast | M73436 | 20102 | X 39.0 cM | blast |
| 23 | nicotinic acetylcholine receptor, alpha 4 | CS | AJ250361 | blast | U62433 | 1137 | 20q13.2-q13.3 | blast | AF225912 | 11438 | 2 108.0 cM | blast |
| 24 | frizzled 1 | CS | AF031830 | blast | AB017363 | 8321 | 7q21 | blast | AF054623 | 14362 | blast | |
| 25 | beta 2 microglobulin | COD | M84767 | blast | AB021288 | 567 | 15q21-q22.2 | blast | NM_009735 | 12010 | 2 69.0 cM | blast |
| 26 | interleukin 1 beta | COD | Y15006 | blast | M15330 | 3553 | 2q14 | blast | M15131 | 16176 | 2 73.0 cM | blast |
| 27 | interleukin 2 | COD | AF000631 | blast | S77834 | 3558 | 4q26-q27 | blast | X01772 | 16183 | 3 19.2 cM | blast |
| 28 | interferon alpha | COD | AB021154 | blast | M11026 | 3451 | 9p22 | blast | X01974 | 15962 | 4 42.6 cM | blast |
| 29 | interferon gamma | COD | U27465 | blast | X13274 | 3458 | 12q14 | blast | K00083 | 15978 | 10 67.0 cM | blast |
| 30 | interleukin 15 | COD | AY005476 | blast | U14407 | 3600 | 4q31 | blast | U14332 | 16168 | 8 38.0 cM | blast |
| 31 | leptin receptor | CS | AB033383 | blast | U43168 | 3953 | 1p31 | blast | U46135 | 16847 | 4 46.7 cM | blast |
| 32 | CD9 antigen | CS | AB032767 | blast | M38690 | 928 | 12p13 | blast | L08115 | 12527 | 6 58.0 cM | blast |
| 33 | acidic ribosomal phosphoprotein (P0) | GPE | L28704 | blast | M17885 | 6175 | 12 | blast | X15267 | 11837 | blast | |
| 34 | ubiquitin conjugating enzyme | GPE | AF120212 | blast | BC010175 | 7329 | 16p13.3 | blast | AF383148 | 22196 | blast | |
| 35 | superoxide dismutase | M | U28407 | blast | K00065 | 6647 | 21q22.11 | blast | M35725 | 20655 | 16 61.0 cM | blast |
| 36 | sonic hedgehog | CS | L28099 | blast | L38518 | 6469 | 7q36 | blast | X76290 | 20423 | 5 16.0 cM | blast |
| 37 | JAK3 | CS | AF034576 | blast | NM_000215 | 3718 | 19p13.1 | blast | L40172 | 16453 | 8 33.0 cM | blast |
| 38 | JAK1 | CS | AF096264 | blast | NM_002227 | 3716 | 1p32.3-p31.3 | blast | S63728 | 16451 | 4 46.3 cM | blast |
| 39 | plekstrin | CS | AF143848 | blast | NM_002664 | 5341 | 2p14 | blast | NM_019549 | 27260 | blast | |
| 40 | elongation factor 1 alpha | GPE | L00677 | blast | X03558 | 1915 | 6q14 | blast | BC005660 | 13627 | blast | |
| 41 | GAPDH | M | AF047874 | blast | M33197 | 2597 | 12p13 | blast | M32599 | 14433 | 6 56.0 cM | blast |
| 42 | cyclin D1 | CD | U40844 | blast | BC000076 | 893 | 11q13 | blast | NM_007631 | 12443 | 7 72.3 cM | blast |
| 43 | KIAA0009 | ? | AF208489 | blast | D13634 | 9650 | 8p22-q21.13 | blast | AF354708 | blast | ||
| 44 | macrophage migration inhibitory factor | CS | M95776 | blast | M25639 | 4282 | 22q11.23 | blast | NM_010798 | 17319 | 10 40.9 cM | blast |
| 45 | clusterin | COD | AF119370 | blast | NM_001831 | 1191 | 8p21-p12 | blast | L08235 | 12759 | 14 28.0 cM | blast |
| 46 | GATA-6 transcription factor | GPE | U11889 | blast | U66075 | 2627 | 18q11.1-q11.2 | blast | AF179425 | 14465 | 18 3.0 cM | blast |
| 47 | kinectin | SM | U15617 | blast | Z22551 | 3895 | 14q22.1 | blast | L43326 | 16709 | 14 C2 | blast |
| 48 | myosin binding protein H | SM | L05605 | blast | L05606 | 4608 | 1q32.1 | blast | U68267 | 53311 | blast | |
| 49 | paraoxonase-2 | M | L47573 | blast | NM_000305 | 5445 | 7q21.3 | blast | L48514 | 18980 | 6 1.5 cM | blast |
| 50 | progesterone receptor | CS | Y00092 | blast | M15716 | 5241 | 11q22-q23 | blast | M68915 | 18667 | 9 | blast |
| 51 | transglutaminase | GPE | L02270 | blast | M55153 | 7052 | 20q12 | blast | M55154 | 21817 | 2 89.0 cM | blast |
| 52 | growth factor receptor-binding protein 2 | CS | L19258 | blast | NM_002086 | 2885 | 17q24-q25 | blast | NM_008163 | 14784 | 11 75.0 cM | blast |
| 53 | beta-1, 4-galactosyltransferase | M | U19889 | blast | AB024434 | 8704 | 1p34-p33 | blast | AB019541 | 53418 | blast | |
| 54 | calmodulin | CS | AF081672 | blast | M27319 | 801 | 14q24-q31 | blast | M19381 | 12313 | 7 4.5 cM | blast |
| 55 | casein kinase II alpha | M | M59456 | blast | M55265 | 1457 | 20p13 | blast | U51866 | 12999 | blast | |
| 56 | chondromodulin-I | SM | AF138280 | blast | AB006000 | 11061 | 13q14-q21 | blast | U43509 | 16840 | blast | |
| 57 | CLOCK | CS | AF132531 | blast | AF011568 | 9575 | 4q12 | blast | AF000998 | 12753 | 5 43.0 cM | blast |
| 58 | connexin 43 | COD | M29003 | blast | M65188 | 2697 | 6q21-q23.2 | blast | M61896 | 14609 | 10 29.0 cM | blast |
| 59 | corticotropin-releasing factor receptor | CS | L41563 | blast | X72304 | 1394 | 17q12-q22 | blast | NM_007762 | 12921 | 11 62.0 cM | blast |
| 60 | thrombospondin 2 | COD | M60853 | blast | L12350 | 7058 | 6q27 | blast | L07803 | 21826 | 17 8.1 cM | blast |
| 61 | endothelial PAS domain protein 1 | GPE | AF129813 | blast | U81984 | 2034 | 2p21-p16 | blast | U81983 | 13819 | 17 | blast |
| 62 | estrogen receptor beta | CS | AB036415 | blast | AB006590 | 2100 | 14q | blast | U81451 | 13983 | 12 33.0 cM | blast |
| 63 | focal adhesion molecule | COD | M86656 | blast | L13616 | 5747 | 8q24-qter | blast | M95408 | 14083 | 15 42.0 cM | blast |
| 64 | GDNF receptor alpha | CS | U90541 | blast | U95847 | 2674 | 10q26 | blast | AB000800 | 14585 | 19 D2-D3 | blast |
| 65 | gremlin | COD | AF045799 | blast | AF110137 | 26585 | 15q13-q15 | blast | AF045801 | 23892 | 2 64.5 cM | blast |
| 66 | hypoxia-inducible factor 1 alpha | GPE | AB013746 | blast | U22431 | 3091 | 14q21-q24 | blast | AF003695 | 15251 | 12 31.0 cM | blast |
| 67 | inward rectifier potassium channel | COD | AF021141 | blast | AF021139 | 3759 | 17q23.1-q24.2 | blast | AF021136 | 16518 | 11 68.0 cM | blast |
| 68 | GARS-AIRS-GART | M | X54200 | blast | X54199 | 2618 | 21q22.11 | blast | U01024 | 14450 | 16 63.0 cM | blast |
| 69 | makorin 1 | GPE | AF192787 | blast | AF192784 | 23608 | 7q34 | blast | AF192785 | 54484 | 6 | blast |
| 70 | Mel-1a melatonin receptor | CS | U31820 | blast | U14108 | 4543 | 4q35.1 | blast | U52222 | 17773 | 8 25.0 cM | blast |
| 71 | neuropilin | CS | D45416 | blast | AF018956 | 8829 | 10p12 | blast | D50086 | 18186 | 8 73.0 cM | blast |
| 72 | alpha actinin associated LIM protein | SM | AJ249218 | blast | AF002282 | 27295 | 4q35 | blast | NM_016798 | 53318 | blast | |
| 73 | persyn | SM | AF253513 | blast | AF017256 | 6623 | 10q23.2-q23.3 | blast | AF017255 | 20618 | 14 12.5 cM | blast |
| 74 | regucalcin | COD | AB037935 | blast | AB032064 | 9104 | Xp11.3-q11.2 | blast | D86217 | 19733 | blast | |
| 75 | vitamin D receptor | CS | AF011356 | blast | J03258 | 7421 | 12q12-q14 | blast | D31969 | 22337 | 5 56.0 cM | blast |
| 76 | WDR1 protein | CS | AF020054 | blast | NM_017491 | 9948 | 4p | blast | AF020055 | 22388 | blast | |
| 77 | H+ K+ ATPase beta | M | L08047 | blast | M75110 | 496 | 13q34 | blast | NM_009724 | 11945 | 8 4.0 cM | blast |
| 78 | adenylosuccinate lyase | M | M37901 | blast | X65867 | 158 | 22q13.2 | blast | NM_009634 | 11564 | 15 46.0 cM | blast |
| 79 | Meis2 | GPE | AF199011 | blast | AF178948 | 4212 | 15q11.2 | blast | U57343 | 17536 | 2 64.0 cM | blast |
| 80 | fibroblast growth factor 1 | CS | U31863 | blast | X65778 | 2246 | 5q31 | blast | M30641 | 14164 | 18 19.0 cM | blast |
| 81 | retinaldehyde dehydrogenase 2 | M | AF064253 | blast | NM_003888 | 8854 | 15q11.2 | blast | NM_009022 | 19378 | 9 42.0 cM | blast |
| 82 | activin receptor IIB | CS | U31223 | blast | NM_001106 | 93 | 3p22 | blast | M84120 | 11481 | 9 | blast |
| 83 | activin receptor IIA | CS | U31222 | blast | M93415 | 92 | 2q22.2-q23.3 | blast | M65287 | 11480 | 2 30.0 cM | blast |
| 84 | kinesin light chain | SM | U48359 | blast | L04733 | 3831 | 14q32.3 | blast | AF055665 | 16593 | 12 57.0 cM | blast |
| 85 | inhibin alpha | CS | U48438 | blast | M13981 | 3623 | 2q33-q36 | blast | NM_010564 | 16322 | 1 41.6 cM | blast |
| 86 | ribosomal protein L27 | GPE | X56852 | blast | L19527 | 6155 | 17 | blast | AF214527 | 19942 | blast | |
| 87 | creatine kinase B | M | X03509 | blast | L47647 | 1152 | 14q32 | blast | NM_021273 | 12709 | 12 55.0 cM | blast |
| 88 | GTP cyclohydrolase I | M | Z49267 | blast | U19523 | 2643 | 14q22.1-q22.2 | blast | L09737 | 14528 | 14 19.5 cM | blast |
| 89 | integrin alpha 6 | SM | X56559 | blast | X53586 | 3655 | 2 | blast | NM_008397 | 16403 | 2 38.0 cM | blast |
| 90 | lactate dehydrogenase A | M | X53828 | blast | X02152 | 3939 | 11p15.4 | blast | NM_010699 | 16828 | 7 23.5 cM | blast |
| 91 | lactate dehydrogenase B | M | AF069771 | blast | Y00711 | 3945 | 12p12.2-p12.1 | blast | X51905 | 16832 | 6 62.0 cM | blast |
| 92 | lysozyme | COD | V00428 | blast | M19045 | 4069 | 12 | blast | NM_017372 | 17105 | 10 66.0 cM | blast |
| 93 | sprouty 2 | CS | AF176904 | blast | AF039843 | 10253 | 13 | blast | AF176905 | 24064 | 14 51.0 cM | blast |
| 94 | protein tyrosine phosphatase, non-receptor | CS | U86410 | blast | NM_002827 | 5770 | 20q13.1-q13.2 | blast | U24700 | 19246 | blast | |
| 95 | neuroserpin | CS | Z71930 | blast | NM_005025 | 5274 | 3q26.2 | blast | AJ001700 | 20713 | blast | |
| 96 | crystallin, beta A2 | SM | U28145 | blast | AF166331 | 1412 | 2q34-q36 | blast | AJ272227 | 12958 | 1 40.8 cM | blast |
| 97 | crystallin, beta B3 | SM | U28146 | blast | NM_004076 | 1417 | 22q11.23 | blast | AJ272229 | 12962 | 5 60.0 cM | blast |
| 98 | calcyclin | CD | U76365 | blast | BC009017 | 6277 | 1q21 | blast | M37761 | 20200 | 3 43.6 cM | blast |
| 99 | calgizzarin | SM | U77733 | blast | D38583 | 6282 | 1q21 | blast | U41341 | 20194 | 3 41.7 cM | blast |
| 100 | arylalkylamine N-acetyltransferase | M | U46502 | blast | NM_001088 | 15 | 17q25 | blast | NM_009591 | 11298 | 11 70.0 cM | blast |
| 101 | angiotensin II receptor | CS | U76704 | blast | NM_000685 | 185 | 3q21-q25 | blast | S37484 | 11607 | 13 16.0 cM | blast |
| 102 | filensin | SM | X72873 | blast | Y16717 | 631 | 20p11.23-p12.1 | blast | AB003147 | 12075 | 2 G | blast |
| 103 | cartilage associated protein | SM | X97607 | blast | AJ006470 | 10491 | 3p22 | blast | AJ006469 | 56693 | 9 F3-F4 | blast |
| 104 | transcription factor AP-2 beta | GPE | AF065140 | blast | NM_003221 | 7021 | 6p12 | blast | NM_009334 | 21419 | 1 A2-A4 | blast |
| 105 | ferrochelatase | M | U68033 | blast | D00726 | 2235 | 18q21.3 | blast | M61215 | 14151 | 18 39.0 cM | blast |
| 106 | ferritin H chain protein | COD | Y14698 | blast | M11146 | 2495 | 11q13 | blast | M24509 | 14319 | 19 2.0 cM | blast |
| 107 | CD8 alpha chain | CS | Z22726 | blast | NM_001768 | 925 | 2p12 | blast | U34881 | 12525 | 6 30.5 cM | blast |
| 108 | CD8 beta chain | CS | Z26484 | blast | M36712 | 926 | 2p12 | blast | NM_009858 | 12526 | 6 30.5 cM | blast |
| 109 | matrilin-3 | SM | AJ000055 | blast | AJ224741 | 4148 | 2p24-p23 | blast | Y10521 | 17182 | 12 2.0 cM | blast |
| 110 | vitronectin | COD | Y11030 | blast | NM_000638 | 7448 | 17q11 | blast | M77123 | 22370 | 11 45.09 cM | blast |
| 111 | translin | GPE | X95074 | blast | NM_004622 | 7247 | 2q21.1 | blast | NM_011650 | 22099 | 1 | blast |
| 112 | chondroitin 6-sulfotransferase | SM | D49915 | blast | AB017915 | 9469 | 10pter-q21.2 | blast | AB008937 | 53374 | 9 C | blast |
| 113 | polysialyltransferase | SM | AF008194 | blast | NM_005668 | 7903 | 5q21 | blast | AJ223956 | 20452 | blast | |
| 114 | inhibitor of DNA binding 2 | GPE | AF068831 | blast | NM_002166 | 3398 | 2p25 | blast | NM_010496 | 15902 | 12 7.0 cM | blast |
| 115 | ephrin B1 | CS | U72394 | blast | NM_004429 | 1947 | Xq12 | blast | NM_010110 | 13641 | X 37.0 cM | blast |
| 116 | ephrin B2 | CS | AF180729 | blast | NM_004093 | 1948 | 13q33 | blast | NM_010111 | 13642 | 8 2.0 cM | blast |
| 117 | inhibin beta A | CS | U42377 | blast | M13436 | 3624 | 7p15-p13 | blast | X69619 | 16323 | 13 10.0 cM | blast |
| 118 | cadherin 11 | SM | AF055342 | blast | L34056 | 1009 | 16q22.1 | blast | D31963 | 12552 | 8 46.5 cM | blast |
| 119 | nicotinic acetylcholine receptor, alpha 7 | CS | X68586 | |||||||||