TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(369 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,171,752 sequences; 566,364,212 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|X17504.1|GGTHRB Chicken mRNA for thyroid hormone recept... 726 0.0
emb|Z50188.1|GGBETATHR G.gallus mRNA for beta-thyroid hormo... 726 0.0
emb|Z49151.1|CMBTHR C.moschata mRNA for beta-thyroid hormon... 726 0.0
gb|M65207.1|CHKTRB Chicken beta-thyroid hormone receptor (T... 711 0.0
ref|XM_002986.3| Homo sapiens thyroid hormone receptor, bet... 704 0.0
ref|NM_009380.1| Mus musculus thyroid hormone receptor beta... 700 0.0
gb|S62756.1|S62756 hormone receptor beta subunit [mice, thy... 700 0.0
gb|J03819.1|RATT3REC Rattus norvegicus (clone erb62) thyroi... 700 0.0
gb|L27344.1|RANCERBAB Rana catesbeiana (c-erbA-beta) mRNA, ... 699 0.0
gb|J03933.1|RATCERBAB Rat thyroid receptor hormone beta (c-... 699 0.0
ref|NM_000461.1| Homo sapiens thyroid hormone receptor, bet... 696 0.0
emb|X04707.1|HSERBAR Human c-erb-A mRNA for thyroid hormone... 696 0.0
gb|M26747.1|HUMCERBA Human c-erbA mRNA, complete cds 696 0.0
gb|M35360.1|XELBETAB X.laevis thyroid hormone receptor beta... 694 0.0
gb|M35359.1|XELBETA X.laevis thyroid hormone receptor beta ... 693 0.0
gb|M35361.1|XELBETAC X.laevis thyroid hormone receptor beta... 692 0.0
gb|M35362.1|XELBETAD X.laevis thyroid hormone receptor beta... 690 0.0
gb|AF109732.1|AF109732 Danio rerio thyroid hormone receptor... 677 0.0
gb|AF302252.1|AF302252 Salmo salar thyroid hormone receptor... 663 0.0
gb|AF302251.1|AF302251 Salmo salar thyroid hormone receptor... 655 0.0
dbj|D45245.1|PAITHRB Flounder mRNA for thyroid hormone rece... 655 0.0
emb|Y00987.1|GGCERBAR Chicken c-erbA mRNA for thyroid hormo... 644 0.0
emb|Z50080.1|CMATHREC C.moschata mRNA for alpha-thyroid hor... 637 0.0
emb|AJ002363.1|APAJ2363 Aptenodytes patagonicus mRNA for al... 635 e-180
emb|X55005.1|HSCERBAR Homo sapiens mRNA for thyroid hormone... 629 e-178
gb|M24748.1|HUMTHRA1A Human thyroid hormone receptor alpha ... 629 e-178
gb|BC008851.1|BC008851 Homo sapiens, thyroid hormone recept... 629 e-178
emb|X07750.1|MMCERBA1 Mouse c-erbA alpha1 mRNA for thyroid ... 629 e-178
gb|L76285.1|XELXLTH Xenopus laevis thyroid hormone alpha B ... 629 e-178
emb|Z68308.1|OAERBAAL1 O.aries mRNA for thyroid hormone rec... 629 e-178
emb|AJ005797.1|SSAJ5797 Sus scrofa mRNA for thyroid hormone... 629 e-178
emb|X12744.1|RNCERBATR Rat mRNA for c-erb-A thyroid hormone... 629 e-178
gb|M35343.1|XELTHYA Xenopus laevis thyroid hormone receptor... 627 e-178
gb|M18028.1|RATTHR Rat thyroid hormone receptor mRNA, compl... 627 e-178
gb|L06064.1|RANCERBAA Rana catesbeiana c-erbA-alpha mRNA, c... 627 e-178
emb|X17385.1|XLTHR Xenopus mRNA for thyroid hormone receptor 627 e-178
emb|X51983.1|MMCERBA Mouse c-erbA-alpha mRNA for thyroid ho... 627 e-178
emb|AJ002300.1|PAAJ2300 Pygoscelis adeliae mRNA for thyroid... 622 e-176
gb|M35344.1|XELTHYB X.laevis thyroid hormone receptor alpha... 621 e-176
gb|U54796.1|DRU54796 Danio rerio thyroid hormone receptor a... 615 e-174
gb|AF146775.1|AF146775 Salmo salar thyroid hormone receptor... 613 e-174
dbj|D16462.1|PAITHRAB Japanese flounder mRNA for thyroid ho... 610 e-173
gb|AF143296.1|AF143296 Hippoglossus hippoglossus thyroid ho... 607 e-172
dbj|D16461.1|PAITHRAA1 Japanese flounder mRNA for thyroid h... 606 e-171
gb|M17870.1|ACBERBAR Avian erythroblastosis virus strain ES... 598 e-169
gb|M32090.1|ACBERBABG Avian erythroblastosis virus gag, erb... 595 e-168
emb|X12707.1|AEVPDNA Avian erythroblastosis virus provirus ... 595 e-168
emb|Y00044.1|REAEVERB Avian erythroblastosis virus gag, erb... 595 e-168
gb|M17869.1|ACBERBATD Avian erythroblastosis virus strain E... 595 e-168
gb|K02006.1|ACBERBA Avian erythroblastosis virus polyprotei... 594 e-168
emb|X52211.1|AEVVER Avian erythroblastosis virus v-erb-A an... 592 e-167
emb|Z68307.1|OAERBABT1 O.aries mRNA for thyroid hormone rec... 590 e-167
emb|X07752.1|MMCERBA3 Mouse c-erbA alpha3 mRNA for thyroid ... 553 e-156
gb|M24899.1|HUMEAR7A Human triiodothyronine (ear7) mRNA, co... 552 e-155
gb|BC000261.1|BC000261 Homo sapiens, thyroid hormone recept... 552 e-155
ref|XM_083987.1| Homo sapiens thyroid hormone receptor, alp... 552 e-155
ref|XM_008585.3| Homo sapiens thyroid hormone receptor, alp... 552 e-155
gb|J03239.1|HUMTHRA2A Human c-erbA-alpha-2 gene encoding th... 552 e-155
gb|BC002728.1|BC002728 Homo sapiens, thyroid hormone recept... 552 e-155
emb|AJ005798.1|SSAJ5798 Sus scrofa mRNA for thyroid hormone... 552 e-155
emb|X07751.1|MMCERBA2 Mouse c-erbA alpha2 mRNA for thyroid ... 552 e-155
emb|X07409.1|RNTRAVI Rat c-erb-A alpha mRNA for T3 receptor... 552 e-155
ref|NM_003250.1| Homo sapiens thyroid hormone receptor, alp... 550 e-155
emb|Y00479.1|HSERBT1 H.sapiens mRNA for thyroid hormone rec... 550 e-155
ref|NM_031134.1| Rattus norvegicus thyroid hormone receptor... 548 e-154
gb|M31174.1|RATERBAA Rat c-erbA-alpha-2-related protein mRN... 548 e-154
gb|AF302254.1|AF302254 Scophthalmus maximus thyroid hormone... 546 e-153
gb|AF302243.1|AF302243 Takifugu rubripes thyroid hormone re... 509 e-142
gb|AF302253.1|AF302253 Scophthalmus maximus thyroid hormone... 486 e-135
gb|AF302247.1|AF302247 Oreochromis niloticus thyroid hormon... 481 e-134
gb|AF302241.1|AF302241 Anguilla anguilla thyroid hormone re... 478 e-133
gb|AF302244.1|AF302244 Takifugu rubripes thyroid hormone re... 471 e-131
gb|AF302242.1|AF302242 Danio rerio thyroid hormone receptor... 460 e-127
gb|AF302248.1|AF302248 Oreochromis niloticus thyroid hormon... 449 e-124
gb|AF322218.1|AF322218 Danio rerio thyroid hormone receptor... 413 e-113
gb|AF302240.1|AF302240 Anguilla anguilla thyroid hormone re... 408 e-112
gb|M31177.1|RATERBAA2 Rat c-erbA-alpha-2 protein mRNA, comp... 387 e-106
gb|AF302246.1|AF302246 Oncorhynchus mykiss thyroid hormone ... 373 e-101
gb|AF302249.1|AF302249 Oreochromis niloticus thyroid hormon... 357 7e-97
gb|AF302245.1|AF302245 Oncorhynchus mykiss thyroid hormone ... 356 2e-96
gb|AF302250.1|AF302250 Salmo salar thyroid hormone receptor... 345 4e-93
gb|AY049025.1|AY049025S1 Rana pipiens thyroid hormone recep... 323 2e-86
gb|AF146777.1|AF146777 Salmo salar thyroid hormone receptor... 320 1e-85
emb|Y16623.1|NMY16623 Necturus maculosus mRNA for thyroid h... 280 2e-73
dbj|AB057767.1|AB057767 Ciona savignyi Cs-NR1 mRNA for nucl... 280 2e-73
gb|AF077403.1|AF077403 Ciona intestinalis nuclear receptor ... 265 4e-69
gb|S74155.1|S74155 zRAR alpha =retinoic acid receptor alpha... 231 8e-59
emb|AJ012379.2|FRU012379 Fugu rubripes mRNA for retinoic ac... 231 1e-58
emb|AJ012378.1|FRU012378 Fugu rubripes mRNA for retinoic ac... 231 1e-58
emb|X59473.1|GGRARBETA G.gallus mRNA for retinoic acid rece... 230 1e-58
emb|X57340.1|GDRARB Chicken RAR-beta mRNA for retinoic acid... 230 2e-58
gb|AF110730.1|AF110730 Coturnix coturnix retinoic acid rece... 230 2e-58
emb|X56674.1|GGRTABPB Chicken mRNA for retinoic acid bindin... 230 2e-58
emb|X57339.1|GDRARB1 G.domesticus RAR beta mRNA for retinoi... 230 2e-58
emb|X57341.1|GDRARB2 G.domesticus RAR beta mRNA for retinoi... 230 2e-58
gb|AF110729.1|AF110729 Coturnix coturnix retinoic acid rece... 230 2e-58
gb|AY046944.1| Mesocricetus auratus retinoic acid receptor ... 229 3e-58
emb|X07282.1|HSRARE Human mRNA for retinoic acid receptor-e... 229 3e-58
emb|Y00291.1|HSHAPRA Human hap mRNA encoding a DNA-binding ... 229 4e-58
gb|S63196.1|S63196 retinoic acid receptor-beta [chickens, m... 229 4e-58
gb|AF342944.1|AF342944 Danio rerio retinoic acid receptor a... 229 4e-58
gb|L03399.1|ZEFRARA2B Zebrafish retinoic acid receptor alph... 229 4e-58
gb|AF342936.1|AF342936 Danio rerio retinoic acid receptor a... 229 4e-58
gb|L03398.1|ZEFRARA2A Zebrafish retinoic acid receptor alph... 229 4e-58
gb|AF157483.1|AF157483 Homo sapiens retinoic acid receptor ... 228 5e-58
ref|NM_000965.2| Homo sapiens retinoic acid receptor, beta ... 228 5e-58
ref|NM_016152.2| Homo sapiens retinoic acid receptor, beta ... 228 5e-58
ref|XM_053323.1| Homo sapiens retinoic acid receptor, beta ... 228 5e-58
gb|S56660.1|S56660 retinoic acid nuclear receptor isoform b... 228 7e-58
emb|X78335.1|GGRARA21 G.gallus retinoic acid receptor alpha... 228 7e-58
emb|X73972.1|GGRARA1 G.gallus RAR-alpha1 mRNA for retinoic ... 228 7e-58
gb|AF242867.1|AF242867 Synthetic construct ECFP-retinoic ac... 228 9e-58
gb|AY046943.1| Mesocricetus auratus retinoic acid receptor ... 228 9e-58
gb|U41743.1|HSU41743 Human nucleophosmin-retinoic acid rece... 228 9e-58
gb|U41742.1|HSU41742 Human nucleophosmin-retinoic acid rece... 228 9e-58
gb|S50916.1|S50916 PML-RAR fusion gene {fusion transcript} ... 228 9e-58
gb|S56656.1|S56656 retinoic acid nuclear receptor isoform a... 228 9e-58
emb|Y10094.1|MSRARA M.spretus mRNA for retinoic acid recept... 228 9e-58
gb|BC008727.1|BC008727 Homo sapiens, retinoic acid receptor... 228 9e-58
ref|NM_000964.1| Homo sapiens retinoic acid receptor, alpha... 228 9e-58
emb|X06614.1|HSRRA Human mRNA for receptor of retinoic acid 228 9e-58
gb|M73779.1|HUMPMLRAR Human PML-RAR protein (PML-RAR) mRNA,... 228 9e-58
emb|X06538.1|HSRAR Human mRNA for retinoic acid receptor 228 9e-58
gb|S82173.1|S82173 RAR-gamma 2.1=retinoic acid receptor gam... 227 1e-57
gb|S82175.1|S82175 RAR-gamma 2.2=retinoic acid receptor gam... 227 1e-57
gb|L11444.1|XELSRARG1A Xenopus laevis mRNA sequence 226 2e-57
dbj|D86615.1|D86615 Polyandrocarpa misakiensis mRNA for ret... 226 2e-57
emb|X87365.1|XLRNARARA X.laevis mRNA for retinoic acid rece... 226 3e-57
emb|Z14254.1|NVRARA2M N.viridescens mRNA for retinoic acid ... 226 3e-57
emb|X17585.1|NVRARAG Newt mRNA for retinoic acid receptor a... 226 3e-57
ref|NM_031528.1| Rattus norvegicus Retinoic acid receptor, ... 225 6e-57
gb|U15211.1|RNU15211 Rattus norvegicus retinoic acid recept... 225 6e-57
emb|X59396.1|XLRARGB Xenopus laevis mRNA for retinoic acid ... 225 6e-57
emb|X17586.1|NVRARDG Newt mRNA for retinoic receptor delta ... 224 1e-56
emb|X69944.1|NVRARD1AB N.viridescens retinoic acid receptor... 224 1e-56
gb|AF206315.1|AF206315 Ambystoma mexicanum retonoic acid re... 224 1e-56
gb|M57707.1|HUMRARG Human retinoic acid receptor gamma mRNA... 224 1e-56
gb|BC019098.1|BC019098 Homo sapiens, retinoic acid receptor... 224 1e-56
gb|M24857.1|HUMHRARC Human retinoic acid receptor gamma mRN... 224 1e-56
ref|XM_029728.3| Homo sapiens retinoic acid receptor, gamma... 224 1e-56
gb|BC012923.1|BC012923 Mus musculus, Similar to retinoic ac... 224 1e-56
ref|NM_011244.1| Mus musculus retinoic acid receptor, gamma... 224 1e-56
emb|X15848.1|MMRARG Mouse mRNA for retinoic acid receptor g... 224 1e-56
gb|L12060.1|HUMRARG7A Homo sapiens retinoic acid receptor (... 224 1e-56
ref|NM_000966.1| Homo sapiens retinoic acid receptor, gamma... 224 1e-56
gb|M38258.1|HUMRARGA Human retinoic acid receptor gamma 1 m... 224 1e-56
gb|S74156.1|S74156 zRAR gamma =retinoic acid receptor gamma... 223 2e-56
gb|BC013709.1|BC013709 Mus musculus, retinoic acid receptor... 223 2e-56
gb|AY046945.1| Mesocricetus auratus retinoic acid receptor ... 223 2e-56
gb|AF342939.1|AF342939 Danio rerio retinoic acid receptor g... 223 2e-56
gb|AF206316.1|AF206316S1 Ambystoma mexicanum retonoic acid ... 223 3e-56
gb|M34475.1|MUSRARGB Mouse retinoic acid receptor gamma (RA... 222 4e-56
gb|M34476.1|MUSRARGA Mouse retinoic acid receptor gamma (mR... 222 4e-56
emb|X73973.1|GGRARG2 G.gallus RAR-gamma2 mRNA for retinoic ... 222 5e-56
gb|L11445.1|XELXRARA Xenopus laevis mRNA sequence 221 6e-56
emb|AJ238614.1|SSC238614 Sus scrofa mRNA for thyroid hormon... 217 1e-54
ref|NM_009024.1| Mus musculus retinoic acid receptor, alpha... 216 3e-54
gb|M60909.1|MUSRARAP Mouse retinoic acid receptor alpha' mR... 216 3e-54
emb|X57528.1|MMRARA M.musculus mRNA for retinoic acid recep... 213 2e-53
dbj|D86614.1|D86614 Polyandrocarpa misakiensis mRNA for ret... 197 1e-48
gb|AF342940.1|AF342940 Danio rerio retinoic acid receptor g... 195 6e-48
gb|L03400.1|ZEFRARGII Zebrafish retinoic acid receptor gamm... 195 6e-48
ref|NM_005693.1| Homo sapiens nuclear receptor subfamily 1,... 192 4e-47
gb|U22662.1|HSU22662 Human nuclear orphan receptor LXR-alph... 192 4e-47
emb|Y11533.1|TMECDYREC T.molitor mRNA for ecdysone receptor 192 5e-47
gb|AF085745.1|AF085745 Mus musculus nuclear orphan receptor... 190 2e-46
ref|NM_013839.1| Mus musculus nuclear receptor subfamily 1,... 190 2e-46
gb|BC012646.1|BC012646 Mus musculus, Similar to nuclear rec... 190 2e-46
emb|AJ132601.1|MMU132601 Mus musculus mRNA for nuclear oxys... 190 2e-46
ref|NM_031627.1| Rattus norvegicus nuclear receptor subfami... 190 2e-46
gb|U11685.1|RNU11685 Rattus norvegicus orphan receptor RLD-... 190 2e-46
dbj|AB073784.1|AB073784 Paralichthys olivaceus fRAR-2 mRNA ... 187 1e-45
dbj|AB073781.1|AB073781 Paralichthys olivaceus fRARg mRNA f... 187 2e-45
gb|AF047467.1|AF047467 Sparus aurata thyroid hormone recept... 186 4e-45
gb|AF049136.1|AF049136 Locusta migratoria ecdysone receptor... 185 5e-45
dbj|AB073782.1|AB073782 Paralichthys olivaceus fRAR-1 mRNA ... 185 5e-45
gb|AF034086.2|AF034086 Celuca pugilator ecdysteroid recepto... 184 8e-45
dbj|AB073783.1|AB073783 Paralichthys olivaceus fRARa mRNA f... 184 1e-44
gb|L35266.1|BMOECDYREC Bombyx mori 20-hydroxy-ecdysone rece... 176 4e-42
gb|U09419.1|MMU09419 Mus musculus retinoid X receptor inter... 175 7e-42
emb|AJ224341.1|CCAJ4341 Ceratitis capitata mRNA for ecdyson... 175 7e-42
ref|NM_009473.1| Mus musculus nuclear receptor subfamily 1,... 175 7e-42
ref|NM_031626.1| Rattus norvegicus nuclear receptor subfami... 174 9e-42
gb|U14533.1|RNU14533 Rattus norvegicus orphan receptor mRNA... 174 9e-42
gb|U20389.1|RNU20389 Rattus norvegicus orphan nuclear recep... 174 9e-42
ref|NM_007121.1| Homo sapiens nuclear receptor subfamily 1,... 174 1e-41
gb|U07132.1|HSU07132 Human steroid hormone receptor Ner-I m... 174 1e-41
dbj|D43943.1|BMOBMECRB1 Silkworm mRNA for ecdysone receptor... 174 1e-41
gb|BC007790.1|BC007790 Homo sapiens, nuclear receptor subfa... 174 1e-41
gb|U14534.1|HSU14534 Human orphan receptor mRNA, partial cds 174 1e-41
ref|XM_046419.3| Homo sapiens nuclear receptor subfamily 1,... 173 3e-41
gb|AF405205.1|AF405205 Oncorhynchus mykiss thyroid hormone ... 171 7e-41
gb|AF092030.2|AF092030 Choristoneura fumiferana ecdysone re... 171 7e-41
gb|U29531.2|CFU29531 Choristoneura fumiferana ecdysteroid r... 171 7e-41
gb|AF325360.1|AF325360 Calliphora vicina ecdysone receptor ... 171 1e-40
gb|U15547.1|MMBTTHR6 Mus musculus beta 2 thyroid hormone re... 171 1e-40
gb|AC093927.2| Homo sapiens chromosome 3 clone RP11-81I24, ... 169 3e-40
gb|AF210733.1|AF210733 Aedes albopictus ecdysteroid recepto... 168 6e-40
gb|U15548.1|MMBTTHR7 Mus musculus beta 2 thyroid hormone re... 168 8e-40
gb|M95194.1|RANTHYHOR Rana catesbeiana thyroid hormone rece... 166 2e-39
gb|U02021.1|AAU02021 Aedes aegypti ecdysteroid receptor mRN... 166 2e-39
emb|Y09009.1|HVECR H.virescens mRNA for ecdysteroid receptor 166 3e-39
gb|U19812.1|MSU19812 Manduca sexta ecdysone receptor homolo... 166 4e-39
ref|NM_005123.1| Homo sapiens nuclear receptor subfamily 1,... 165 7e-39
gb|U68233.1|HSU68233 Human farnesol receptor HRR-1 (HRR-1) ... 165 7e-39
emb|AJ002940.1|RNAJ2940 Rattus norvegicus mRNA for retinoic... 162 6e-38
emb|AJ002941.1|RNAJ2941 Rattus norvegicus mRNA for retinoic... 162 6e-38
emb|AJ009937.1|HSAJ9937 Homo sapiens mRNA for nuclear hormo... 162 6e-38
ref|NM_033013.1| Homo sapiens nuclear receptor subfamily 1,... 161 8e-38
gb|AF092946.1|AF092946 Metapenaeus ensis nuclear hormone re... 161 8e-38
gb|AF047893.1|SSTHRB2 Salmo salar thyroid hormone receptor-... 160 1e-37
gb|BC015261.1|BC015261 Mus musculus, nuclear receptor subfa... 160 2e-37
gb|AF384555.1|AF384555 Homo sapiens farnesol receptor (NR1H... 160 2e-37
ref|NM_009108.1| Mus musculus nuclear receptor subfamily 1,... 160 2e-37
gb|U09416.1|MMU09416 Mus musculus retinoid X receptor inter... 160 2e-37
ref|XM_042458.2| Homo sapiens nuclear receptor subfamily 1,... 159 4e-37
ref|NM_005122.1| Homo sapiens nuclear receptor subfamily 1,... 159 4e-37
emb|Z30425.1|HSONHORE H.sapiens mRNA for orphan nuclear hor... 159 4e-37
emb|AL590145.2|AL590145 Zebrafish DNA sequence from clone R... 157 1e-36
emb|X75163.1|XLRNAONST X.laevis mRNA for orphan nuclear rec... 157 1e-36
ref|NM_021745.1| Rattus norvegicus farnesoid X activated re... 156 2e-36
gb|U18374.1|RNU18374 Rattus norvegicus farnesoid X activate... 156 2e-36
emb|AL590963.10|AL590963 Mouse DNA sequence from clone RP23... 156 2e-36
dbj|AK002513.1|AK002513 Mus musculus adult male kidney cDNA... 156 3e-36
emb|X04854.1|GGCERBA2 Chicken c-erb A gene exons 2-8 156 3e-36
emb|X55069.1|HSCERBA8 Human c-erbA-1 gene, exon 8 for thyro... 156 3e-36
gb|AF132752.1|OMTHRA2 Oncorhynchus mykiss thyroid hormone r... 155 7e-36
emb|X55068.1|HSCERBA9 Human c-erbA-1 gene, exon 9 for thyro... 154 9e-36
gb|AF305201.1|AF305201 Xenopus laevis orphan nuclear recept... 154 1e-35
gb|AF146776.2|SSTHRB3 Salmo salar thyroid hormone receptor-... 154 2e-35
gb|AF276753.1|AF276753 Gallus gallus xenobiotic receptor (C... 152 5e-35
emb|X51548.1|DME75A Drosophila mRNA for ecdysone-inducible ... 152 6e-35
gb|AY049026.1|AY049025S2 Rana pipiens thyroid hormone recep... 151 8e-35
gb|AF132753.1|OMTHRA3 Oncorhynchus mykiss thyroid hormone r... 151 8e-35
gb|AF290610.1|AF290610 Salmo salar retinoic acid receptor a... 150 2e-34
dbj|AB037673.1|AB037673 Paralichthys olivaceus VDRb mRNA fo... 150 2e-34
ref|NM_009803.1| Mus musculus nuclear receptor subfamily 1,... 149 5e-34
gb|AF009327.1|AF009327 Mus musculus orphan nuclear hormone ... 149 5e-34
gb|AF164512.1|AF164512 Danio rerio vitamin D receptor (vdr)... 148 9e-34
dbj|AB037674.1|AB037674 Paralichthys olivaceus VDRa mRNA fo... 147 1e-33
gb|AF242868.1|AF242868 Synthetic construct ECFP-retinoic ac... 146 3e-33
emb|AJ002942.1|RNAJ2942 Rattus norvegicus mRNA for retinoic... 146 3e-33
gb|U09417.1|MMU09417 Mus musculus retinoid X receptor inter... 144 1e-32
gb|BC009288.1|BC009288 Homo sapiens, nuclear receptor subfa... 144 1e-32
ref|NM_006186.1| Homo sapiens nuclear receptor subfamily 4,... 144 1e-32
emb|X75918.1|HSNOT H.sapiens mRNA for NOT 144 1e-32
gb|U72345.1|RNU72345 Rattus norvegicus orphan nuclear hormo... 143 2e-32
ref|NM_013613.1| Mus musculus nuclear receptor subfamily 4,... 143 2e-32
ref|NM_022941.1| Rattus norvegicus strain Fischer nuclear r... 143 2e-32
gb|AF133095.1|AF133095 Rattus norvegicus strain Wistar Kyot... 143 2e-32
gb|AF133094.1|AF133094 Rattus norvegicus strain Fischer nuc... 143 2e-32
ref|NM_019328.1| Rattus norvegicus nuclear receptor subfami... 143 2e-32
gb|U01146.1|RRU01146 Rattus norvegicus Sprague Dawley nucle... 143 2e-32
gb|S53744.1|S53744 NURR1=Nur-related factor 1 [mice, brain,... 143 2e-32
emb|X66223.1|MMRXRAMR M.musculus mRNA for retinoid X recept... 143 3e-32
ref|NM_012805.1| Rattus norvegicus Retinoid X receptor alph... 143 3e-32
gb|L06482.1|RATRXRA Rat retinoid X receptor alpha mRNA, com... 143 3e-32
gb|U77683.1|MMU77683 Mus musculus RXR alpha 2 (RXR alpha) m... 143 3e-32
ref|NM_011305.1| Mus musculus retinoid X receptor alpha (Rx... 143 3e-32
gb|M84817.1|MUSRXRA Mouse retinoid X receptor alpha (RXR-al... 143 3e-32
gb|U77684.1|MMU77684 Mus musculus RXR alpha 3 (RXR alpha) m... 143 3e-32
gb|S77154.1|S77154 TINUR= NGFI-B/nur77 beta-type transcript... 143 3e-32
gb|AF032983.2|AF032983 Celuca pugilator retinoid X receptor... 142 4e-32
gb|U29894.1|DRU29894 Danio rerio retinoid X receptor gamma ... 142 4e-32
ref|NM_002957.2| Homo sapiens retinoid X receptor, alpha (R... 142 6e-32
gb|AF098284.1|AF098284 Cloning vector pERV3, complete sequence 142 6e-32
emb|X52773.1|HSRARLP Human mRNA for retinoic acid receptor-... 142 6e-32
gb|AF264696.1|AF264696 Cloning vector pFB-ERV, complete seq... 142 6e-32
gb|AF035578.1|AF035578 Amblyomma americanum retinoid X rece... 141 8e-32
gb|AF165528.1|AF165528 Aedes aegypti nuclear hormone recept... 141 1e-31
gb|M24900.1|HUMEAR17A Human triiodothyronine recptor (THRA1... 141 1e-31
ref|XM_050020.1| Homo sapiens similar to nuclear receptor s... 141 1e-31
gb|L11446.1|XELXRXRA Xenopus laevis mRNA sequence 141 1e-31
gb|U91846.1|XLU91846 Xenopus laevis vitamin D receptor mRNA... 141 1e-31
gb|U12641.1|CJU12641 Coturnix japonica vitamin D receptor i... 140 2e-31
gb|U29942.1|DRU29942 Danio rerio retinoid X receptor epsilo... 139 3e-31
ref|NM_000457.1| Homo sapiens hepatocyte nuclear factor 4, ... 139 4e-31
emb|X76930.1|HSHNF4 H.sapiens HNF4 mRNA for hepatocyte nucl... 139 4e-31
emb|X87870.1|HSHNF4AGN H.sapiens mRNA for hepatocyte nuclea... 139 4e-31
emb|Z49825.1|HSHNF4A H.sapiens mRNA for hepatocyte nuclear ... 139 4e-31
emb|X87871.1|HSHNP4BGN H.sapiens mRNA for hepatocyte nuclea... 139 4e-31
emb|X87872.1|HSHNF4CGN H.sapiens mRNA for hepatocyte nuclea... 139 4e-31
dbj|AB030318.1|AB030318 Polyandrocarpa misakiensis PmRXR mR... 138 9e-31
emb|Z37526.1|XLHNF4MR X.laevis HNF4 mRNA encoding hepatocyt... 137 2e-30
gb|AF323681.1|AF323681 Acropora millepora nuclear receptor ... 137 2e-30
ref|NM_021976.1| Homo sapiens retinoid X receptor, beta (RX... 137 2e-30
emb|X63522.1|HSDAUDI6 H.sapiens mRNA DAUDI6 for retinoic ac... 137 2e-30
ref|XM_053680.3| Homo sapiens retinoid X receptor, gamma (R... 137 2e-30
gb|M84820.1|HUMRXRB Human retinoid X receptor beta (RXR-bet... 137 2e-30
ref|NM_006917.1| Homo sapiens retinoid X receptor, gamma (R... 137 2e-30
gb|U38480.1|HSU38480 Human retinoid X receptor-gamma mRNA, ... 137 2e-30
gb|BC012063.1|BC012063 Homo sapiens, Similar to retinoid X ... 137 2e-30
gb|BC001167.1|BC001167 Homo sapiens, retinoid X receptor, b... 137 2e-30
gb|AF418003.1|AF418003 Mustela vison retinoid X receptor be... 137 2e-30
emb|X87366.1|XLRNARXR X.laevis mRNA for retinoic acid recep... 137 2e-30
gb|U09418.1|MMU09418 Mus musculus retinoid X receptor inter... 137 2e-30
gb|U29940.1|DRU29940 Danio rerio retinoid X receptor alpha ... 136 3e-30
ref|NM_011306.1| Mus musculus retinoid X receptor beta (Rxr... 136 3e-30
gb|M81766.1|RATRCOR1A Rat nuclear receptor co-regulator 1 (... 136 3e-30
emb|X66224.1|MMRXRBMR M.musculus mRNA for retinoid X recept... 136 3e-30
gb|M26804.1|MUSH2RIIBP Mouse MHC class I regulatory element... 136 3e-30
gb|M84818.1|MUSRXRB Mouse retinoic X receptor beta (RXR-bet... 135 4e-30
dbj|AB037379.1|AB037379 Tamias sibricus HNF-4 mRNA for hepa... 135 8e-30
gb|BC019432.1|BC019432 Mus musculus, Similar to retinoid X ... 134 1e-29
gb|S73269.1|S73269 RXR beta =xRXR beta [Xenopus laevis, mRN... 134 1e-29
gb|U06073.1|BMU06073 Bombyx mori 703 RXR type hormone recep... 134 1e-29
ref|NM_004133.2| Homo sapiens hepatocyte nuclear factor 4, ... 134 2e-29
emb|Z49826.2|HSHNF4G Homo sapiens mRNA for hepatocyte nucle... 134 2e-29
gb|AF263459.1|AF263459 Apis mellifera ultraspiracle protein... 133 2e-29
ref|NM_008261.1| Mus musculus hepatic nuclear factor 4 (Hnf... 133 3e-29
dbj|D29015.1|MUSHNF Mouse mRNA for hepatocyte nuclear factor 4 133 3e-29
ref|NM_022180.1| Rattus norvegicus Hepatic nuclear factor 4... 132 4e-29
dbj|D10554.1|RATHNF4CL Rattus norvegicus mRNA for hepatocyt... 132 4e-29
emb|X57133.1|RNHNF4 Rat mRNA for hepatocyte nuclear factor ... 132 4e-29
ref|XM_005182.5| Homo sapiens hepatocyte nuclear factor 4, ... 132 5e-29
gb|AY007213.1| Lucilia cuprina ultraspiracle protein mRNA, ... 131 8e-29
emb|AJ251542.1|TMO251542 Tenebrio molitor mRNA for USP prot... 130 2e-28
gb|AF305213.1|AF305213 Aedes aegypti ultraspiracle isoform-... 129 3e-28
gb|AF305214.1|AF305214 Aedes aegypti ultraspiracle isoform-... 129 3e-28
gb|K00613.1|ACBERBADI avian erythroblastosis virus (aev), d... 129 4e-28
gb|U82629.1|SSU82629 Sus scrofa retinoic acid receptor gamm... 129 4e-28
gb|U44837.1|MSU44837 Manduca sexta MsUSP-1 protein (usp) mR... 129 4e-28
gb|AF367206.1| Dirofilaria immitis nuclear receptor nhr-7A ... 129 4e-28
gb|AF016368.1|AF016368 Choristoneura fumiferana molting hor... 127 1e-27
emb|X52591.1|DMHREC2C Drosophila melanogaster mRNA for ster... 127 1e-27
gb|AF035577.1|AF035577 Amblyomma americanum retinoid X rece... 127 2e-27
gb|AF009328.1|AF009328 Mus musculus orphan nuclear hormone ... 127 2e-27
emb|X89247.1|BNDHR38PR B.mori mRNA for BHR38 protein 125 5e-27
ref|NM_013920.1| Mus musculus hepatocyte nuclear factor 4, ... 125 6e-27
emb|AJ242626.1|MMU242626 Mus musculus mRNA for hepatocyte n... 125 6e-27
gb|AF045891.1|AF045891 Chironomus tentans ultraspiracle (US... 123 2e-26
gb|AF323688.1|AF323688 Acropora millepora nuclear receptor ... 122 5e-26
gb|AF170551.1|AF170551 Onchocerca volvulus nuclear hormone ... 120 3e-25
gb|AF323683.1|AF323683 Acropora millepora nuclear receptor ... 118 1e-24
gb|AF323684.1|AF323684 Acropora millepora nuclear receptor ... 118 1e-24
gb|AF367208.1| Dirofilaria immitis nuclear receptor nhr-7C ... 117 2e-24
ref|NM_079409.1| Drosophila melanogaster Ecdysone-induced p... 116 4e-24
emb|X51549.1|DME75B Drosophila mRNA for ecdysone-inducible ... 116 4e-24
gb|U19360.1|OVU19360 Onchocerca volvulus nuclear hormone re... 115 5e-24
gb|AF059026.1|AF059026 Aedes aegypti nuclear transcription ... 114 1e-23
gb|AF059027.1|AF059027 Aedes aegypti nuclear transcription ... 114 1e-23
dbj|AB014889.1|AB014889 Mus musculus mRNA for Nurr2, comple... 112 4e-23
dbj|AB073785.1|AB073785 Paralichthys olivaceus fRXRa mRNA f... 112 5e-23
gb|AF020186.1|AF020186 Amblyomma americanum ecdysteroid rec... 109 4e-22
gb|AF020188.1|AF020188 Amblyomma americanum ecdysteroid rec... 109 4e-22
gb|AF020187.1|AF020187 Amblyomma americanum ecdsyteroid rec... 109 4e-22
ref|NM_060214.1| Ligand-binding domain of nuclear hormone r... 107 1e-21
gb|U15544.1|MMBTTHR3 Mus musculus beta 2 thyroid hormone re... 105 5e-21
gb|AF456453.1|AF456453 Gallus gallus orphan nuclear recepto... 105 5e-21
ref|NM_004959.1| Homo sapiens nuclear receptor subfamily 5,... 105 6e-21
gb|S60739.1|S60739 cEcRH=ecdysteroid receptor homolog [Chir... 105 6e-21
gb|U75355.1|LCU75355 Lucilia cuprina ecdysteroid receptor (... 104 1e-20
gb|AF407573.1|AF407573 Taeniopygia guttata steroidogenic fa... 103 2e-20
gb|AF401742.1|AF401742 Macropus eugenii steroidogenic facto... 103 2e-20
ref|NM_053344.1| Rattus norvegicus nuclear receptor subfami... 103 3e-20
gb|AF203911.1|AF203911 Equus caballus steroidogenic factor ... 103 3e-20
ref|NM_011584.1| Mus musculus thyroid hormone receptor alph... 103 3e-20
gb|U12142.1|MMU12142 Mus musculus orphan nuclear receptor R... 103 3e-20
gb|U76388.1|HSU76388 Human steroidogenic factor 1 mRNA, com... 103 3e-20
ref|NM_008050.1| Mus musculus nuclear receptor subfamily 5,... 103 3e-20
dbj|D10584.1|MUSELP Mus musculus mRNA for embryonal LTR bin... 103 3e-20
dbj|AB000490.1|AB000490 Mouse mRNA for ELP3, complete cds 103 3e-20
dbj|D16815.1|D16815 Homo sapiens mRNA for EAR-1r, complete cds 103 3e-20
dbj|D13569.1|BOVAD4BP Bovine mRNA for Ad4BP 103 3e-20
gb|U09504.1|MMU09504 Mus musculus orphan nuclear receptor R... 103 3e-20
gb|AC007121.1|AC007121 Drosophila melanogaster, chromosome ... 102 4e-20
gb|AF273835.1|AF273835 Caenorhabditis elegans clone yk534g1... 102 4e-20
gb|U84399.1|SSU84399 Sus scrofa steroidogenic factor-1 SF-1... 102 4e-20
gb|AE003784.2|AE003784 Drosophila melanogaster genomic scaf... 102 4e-20
ref|XM_080969.1| Ecdysone receptor, mRNA 102 4e-20
gb|AC009255.4|AC009255 Drosophila melanogaster, chromosome ... 102 4e-20
ref|NM_078135.1| nuclear hormone receptor nhr-91 102 4e-20
gb|AY075461.1| Drosophila melanogaster RE16656 full length ... 102 4e-20
gb|AF273834.1|AF273834 Caenorhabditis elegans clone yk507a4... 102 4e-20
gb|AC008339.2|AC008339 Drosophila melanogaster, chromosome ... 102 4e-20
gb|AF273833.1|AF273833 Caenorhabditis elegans clone yk343f6... 102 4e-20
gb|U20796.1|RNU20796 Rattus norvegicus nuclear receptor Rev... 102 4e-20
gb|M74078.1|DROECR Drosophila melanogaster ecdysone recepto... 102 4e-20
emb|X82777.1|RNREVERBB R.norvegicus mRNA for Rev-erb-Beta1 102 4e-20
dbj|AB002404.1|AB002404 Gallus gallus mRNA for SF-1/Ad4BP, ... 102 7e-20
gb|AF299081.1|AF299081 Ovis aries steroidogenic factor 1 mR... 101 9e-20
gb|AF238308.1|AF238308 Drosophila melanogaster nuclear rece... 101 9e-20
gb|AF008302.1|AF008302 Ambystoma mexicanum developmental or... 101 9e-20
ref|NM_079471.1| Drosophila melanogaster Ecdysone-induced p... 101 9e-20
gb|U01087.1|DMU01087 Drosophila melanogaster Canton S E78A ... 101 9e-20
emb|X98881.1|DMNHRL D.melanogaster mRNA for nuclear hormone... 101 9e-20
emb|X80258.1|GGREVERBB G.gallus REV-ERBb mRNA 101 9e-20
gb|U15545.1|MMBTTHR4 Mus musculus beta 2 thyroid hormone re... 101 1e-19
ref|XM_042906.2| Homo sapiens nuclear receptor subfamily 2,... 101 1e-19
ref|NM_003298.1| Homo sapiens nuclear receptor subfamily 2,... 101 1e-19
gb|L27586.1|HUMTR4OR Human TR4 orphan receptor mRNA, comple... 101 1e-19
gb|U10990.1|HSU10990 Human nuclear receptor hTAK1 (hTAK1) m... 101 1e-19
gb|S75970.1|S75970 mTR2R1=type II zinc finger DNA binding t... 101 1e-19
gb|U11688.1|MMU11688 Mus musculus CD-1 orphan receptor TAK1... 101 1e-19
ref|NM_017323.1| Rattus norvegicus TR4 orphan receptor (Tr4... 101 1e-19
gb|L27513.1|RATTR4OR Rat TR4 orphan receptor mRNA, complete... 101 1e-19
gb|L26957.1|MUSTR2A Mus musculus orphan receptor (TR2) mRNA... 100 2e-19
gb|U30482.1|MMU30482 Mus musculus TR2 (mTR2) mRNA, complete... 100 2e-19
emb|Y11436.1|MMTR211OR M.musculus mRNA for orphan receptor 100 2e-19
gb|S82720.1|S82720 mROR alpha =orphan nuclear receptor [mic... 100 2e-19
dbj|D45910.1|D45910 Mus caroli mRNA for mROR4, complete cds 100 2e-19
gb|U15546.1|MMBTTHR5 Mus musculus beta 2 thyroid hormone re... 100 2e-19
gb|L26398.1|RATTR2OR Rattus norvegicus orphan receptor (TR2... 100 2e-19
gb|M21985.1|HUMSRTR2A Human steroid receptor TR2 mRNA, comp... 100 3e-19
gb|AF013295.1|AF013295 Xenopus laevis developmental orphan ... 100 3e-19
gb|M29959.1|HUMTR29 Human steroid receptor (TR2-9) mRNA, co... 100 3e-19
dbj|AB017352.1|AB017352 Rana rugosa SF-1/Ad4BP mRNA, comple... 100 3e-19
ref|NM_003297.1| Homo sapiens nuclear receptor subfamily 2,... 100 3e-19
gb|M29960.1|HUMTR211 Human steroid receptor (TR2-11) mRNA, ... 100 3e-19
dbj|AB063066.1|AB063066 Macaca fascicularis brain cDNA clon... 100 3e-19
gb|AF012304.1|AF012304 Homo sapiens nuclear mitotic apparat... 100 4e-19
gb|AF136979.1|AF136979 Sparus aurata estrogen receptor type... 100 4e-19
emb|Z82994.1|MMZ82994 M.musculus mRNA for nuclear orphan re... 100 4e-19
ref|NM_013646.1| Mus musculus RAR-related orphan receptor a... 100 4e-19
gb|U53228.1|MMU53228 Mus musculus nuclear hormone receptor ... 100 4e-19
gb|U28265.1|MMU28265 Mus musculus orphan receptor (Tr2-11) ... 100 4e-19
gb|L14611.1|HUMRZRA Human transcription factor RZR-alpha mR... 100 4e-19
gb|BC008831.1|BC008831 Homo sapiens, Similar to RAR-related... 100 4e-19
gb|U04897.1|HSU04897 Human orphan hormone nuclear receptor ... 100 4e-19
emb|AJ006039.1|SAU6039 Sparus aurata mRNA for estrogen rece... 100 4e-19
gb|AF342942.1|AF342942 Danio rerio Rev-Erb beta 2 mRNA, par... 100 4e-19
ref|NM_011629.1| Mus musculus nuclear receptor subfamily 2,... 100 4e-19
ref|NM_002943.1| Homo sapiens RAR-related orphan receptor A... 100 4e-19
gb|U04899.1|HSU04899 Human orphan hormone nuclear receptor ... 100 4e-19
gb|U04898.1|HSU04898 Human orphan hormone nuclear receptor ... 100 4e-19
gb|BC003757.1|BC003757 Mus musculus, RAR-related orphan rec... 100 4e-19
gb|AF206314.1|AF206313S2 Ambystoma mexicanum retinoic acid ... 99 5e-19
gb|U23144.1|XLU23144 Xenopus laevis FTZ-F1-related nuclear ... 99 6e-19
gb|U22437.1|MCU22437 Mus cookii steroid receptor mRNA, part... 99 6e-19
gb|AY034061.1| Danio rerio nuclear receptor FF1aE mRNA, com... 99 6e-19
gb|U05001.1|XLU05001 Xenopus laevis Ftz-F1-related orphan r... 99 6e-19
gb|AF014926.1|AF014926 Danio rerio FTZ-F1 homolog (zFF1) mR... 99 6e-19
emb|Y08640.1|MMTFAC M.musculus mRNA for nuclear orphan rece... 99 6e-19
gb|AY014862.1| Clarias gariepinus fushi tarazu factor 1-A (... 99 8e-19
gb|AY014863.1| Clarias gariepinus fushi-tarazu factor 1-B (... 99 8e-19
dbj|AB016834.1|AB016834 Oryzias latipes mRNA for FTZ-F1, co... 99 8e-19
dbj|AB002403.1|AB002403 Gallus gallus mRNA for FTF/LRH-1, c... 98 1e-18
gb|AF260232.1|AF260232 Trichinella spiralis unknown mRNA 98 1e-18
gb|AF201958.1|AF201958 Eleutherodactylus coqui thyroid horm... 98 1e-18
gb|AF049102.1|AF049102 Homo sapiens alpha1-fetoprotein tran... 98 1e-18
gb|AF124981.1|AF124981 Bombyx mori nuclear receptor GRF (GR... 98 1e-18
gb|U93553.1|HSU93553 Human alpha1-fetoprotein transcription... 98 1e-18
dbj|AB006153.1|AB006153 Oncorhynchus mykiss mRNA for tFZR1,... 98 1e-18
gb|AF198086.1|AF198086 Danio rerio ff1b mRNA, complete cds 98 1e-18
gb|AF124247.1|AF124247 Homo sapiens hepatocytic transcripti... 98 1e-18
ref|XM_036634.2| Homo sapiens nuclear receptor subfamily 5,... 98 1e-18
gb|AF203913.1|AF203913 Equus caballus steroidogenic factor ... 98 1e-18
ref|NM_003822.1| Homo sapiens nuclear receptor subfamily 5,... 98 1e-18
gb|U80251.1|HSU80251 Homo sapiens hepatocytic transcription... 98 1e-18
gb|AF047892.1|SSTHRB1 Salmo salar thyroid hormone receptor-... 98 1e-18
gb|AF146343.1|AF146343 Homo sapiens CYP7A promoter binding ... 98 1e-18
gb|AF288088.1|AF288088 Manduca sexta hormone receptor 4 mRN... 98 1e-18
dbj|AB019246.1|AB019246 Homo sapiens mRNA for FTZ-F1 relate... 98 1e-18
dbj|AB007453.1|AB007453 Chrysophrys major mRNA for estrogen... 98 1e-18
dbj|AB012961.1|AB012961 Rattus norvegicus mRNA for FTZ-F1 b... 98 1e-18
gb|U47280.1|RNU47280 Rattus norvegicus alpha1-fetoprotein t... 98 1e-18
ref|NM_021742.1| Rattus norvegicus nuclear receptor subfami... 98 1e-18
dbj|AB012960.1|AB012960 Rattus norvegicus mRNA for FTZ-F1 b... 98 1e-18
emb|AL031765.1|DMC22E5 Drosophila melanogaster cosmid clone... 98 1e-18
gb|AC105055.2| Drosophila melanogaster X BAC RP98-5N9 (Rosw... 98 1e-18
emb|X53379.1|DMCF1 Drosophila gene for chorion factor CF1 (... 98 1e-18
gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Ro... 98 1e-18
gb|AF136372.1|AF136372 Locusta migratoria RXR (RXR) mRNA, c... 98 1e-18
gb|U32939.1|MMU32939 Mus musculus TR4 mRNA, partial cds 98 1e-18
emb|X53417.1|DMXR2C Drosophila mRNA for XR2C 98 1e-18
ref|NM_030676.1| Mus musculus nuclear receptor subfamily 5,... 98 1e-18
gb|M81385.1|MUSLRH1A Mouse liver receptor homologous protei... 98 1e-18
ref|NM_057433.1| Drosophila melanogaster ultraspiracle (usp... 98 1e-18
gb|AE003422.1|AE003422 Drosophila melanogaster genomic scaf... 98 1e-18
ref|NG_000201.1| Drosophila melanogaster ultraspiracle (usp... 98 1e-18
ref|NG_000806.1| Drosophila melanogaster alpha actinin (Act... 98 1e-18
gb|AY069393.1| Drosophila melanogaster LD09973 full length ... 98 1e-18
gb|BC008989.1|BC008989 Mus musculus, Similar to nuclear rec... 97 2e-18
gb|U15660.1|RRU15660 Rattus norvegicus orphan nuclear recep... 97 2e-18
gb|AF033833.1|AF033833 Trachemys scripta steroidogenic fact... 97 2e-18
ref|XM_042579.2| Homo sapiens retinoid X receptor, beta (RX... 97 2e-18
emb|X66424.1|HSRXRBEX H.sapiens mRNA for retinoid X recepto... 97 2e-18
dbj|AB035498.1|AB035498 Rana rugosa mRNA for FTZ-F1 alpha, ... 97 2e-18
dbj|AB035499.1|AB035499 Rana rugosa mRNA for FTZ-F1 beta, c... 97 2e-18
gb|L31785.1|HUMONHRA Homo sapiens orphan nuclear hormone re... 97 2e-18
gb|AF274870.1|AF274870 Aedes aegypti nuclear receptor FTZ-F... 97 3e-18
ref|NM_079419.1| Drosophila melanogaster ftz transcription ... 96 4e-18
gb|M63711.1|DROFTZF1A D.melanogaster FTZ-F1 mRNA, complete cds 96 4e-18
gb|AY058575.1| Drosophila melanogaster LD26915 full length ... 96 4e-18
gb|M98397.1|DROSTEREC Drosophila melanogaster steroid recep... 96 4e-18
ref|NM_021724.1| Homo sapiens nuclear receptor subfamily 1,... 96 4e-18
gb|M24898.1|HUMEAR1A Human triiodothyronine recptor (THRA1,... 96 4e-18
emb|X72631.1|HSREVERB1 Homo sapiens mRNA for Rev-ErbAalpha ... 96 4e-18
gb|U05003.1|XLU05003 Xenopus laevis Ftz-F1-related orphan r... 96 5e-18
emb|Y08638.1|GGTFAC G.gallus mRNA for nuclear orphan recept... 96 5e-18
emb|X55071.1|HSCERBA5 Homo sapiens partial c-erbA-1 gene, e... 96 5e-18
gb|L14610.1|RATRZRB Rat transcription factor RZR-beta gene,... 96 5e-18
ref|XM_011778.4| Homo sapiens similar to retinoid X recepto... 96 5e-18
gb|AF094759.1|AF094759 Schistosoma mansoni retinoic acid re... 96 5e-18
ref|XM_005384.3| Homo sapiens RAR-related orphan receptor B... 96 5e-18
ref|NM_006914.1| Homo sapiens RAR-related orphan receptor B... 96 5e-18
emb|Y08639.1|HSTFAC H.sapiens mRNA for nuclear orphan recep... 96 5e-18
gb|AF159132.1|AF159132 Metapenaeus ensis fushi tarazu-facto... 96 7e-18
gb|AF288089.1|AF288089 Manduca sexta nuclear hormone recept... 96 7e-18
gb|U31817.1|UPU31817 Uca pugilator ecdysteroid receptor hom... 96 7e-18
>emb|X17504.1|GGTHRB Chicken mRNA for thyroid hormone receptor beta
Length = 1459
Score = 726 bits (1874), Expect = 0.0
Identities = 353/369 (95%), Positives = 353/369 (95%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV
Sbjct: 82 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 261
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA LQKTIGHKP
Sbjct: 262 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTIGHKP 441
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF
Sbjct: 442 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 621
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG
Sbjct: 622 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 801
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI
Sbjct: 802 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 981
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 982 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1161
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1162PLFLEVFED 1188
>emb|Z50188.1|GGBETATHR G.gallus mRNA for beta-thyroid hormone receptor
Length = 1171
Score = 726 bits (1874), Expect = 0.0
Identities = 353/369 (95%), Positives = 353/369 (95%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV
Sbjct: 37 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 216
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA LQKTIGHKP
Sbjct: 217 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTIGHKP 396
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF
Sbjct: 397 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 576
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG
Sbjct: 577 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 756
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI
Sbjct: 757 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 936
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 937 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1116
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1117PLFLEVFED 1143
>emb|Z49151.1|CMBTHR C.moschata mRNA for beta-thyroid hormone receptor
Length = 1171
Score = 726 bits (1874), Expect = 0.0
Identities = 353/369 (95%), Positives = 353/369 (95%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV
Sbjct: 37 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 216
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA LQKTIGHKP
Sbjct: 217 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTIGHKP 396
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF
Sbjct: 397 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 576
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG
Sbjct: 577 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 756
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI
Sbjct: 757 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 936
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 937 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1116
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1117PLFLEVFED 1143
>gb|M65207.1|CHKTRB Chicken beta-thyroid hormone receptor (TR-beta) mRNA, complete cds
Length = 2129
Score = 711 bits (1834), Expect = 0.0
Identities = 348/369 (94%), Positives = 349/369 (94%)
Frame = +3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV
Sbjct: 228 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 407
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA LQKT+ HKP
Sbjct: 408 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTMVHKP 587
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPTDEEWELIKIVTEAHVATNAQ SHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF
Sbjct: 588 EPTDEEWELIKIVTEAHVATNAQVSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 767
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLK CCMEIMSLRAAVRYDPESETLTLNG
Sbjct: 768 TKIITPAITRVVDFAKKLPMFLELPCEDQIILLKVCCMEIMSLRAAVRYDPESETLTLNG 947
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI
Sbjct: 948 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 1127
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1128EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1307
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1308PLFLEVFED 1334
>ref|XM_002986.3| Homo sapiens thyroid hormone receptor, beta (erythroblastic
leukemia viral (v-erb-a) oncogene homolog 2, avian)
(THRB), mRNA
Length = 1391
Score = 704 bits (1816), Expect = 0.0
Identities = 341/367 (92%), Positives = 345/367 (93%)
Frame = +3
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCVID
Sbjct: 261 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 440
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 441 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEP 620
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
TDEEWELIK VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 621 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 800
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 801 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 980
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 981 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 1160
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1161YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1340
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1341FLEVFED 1361
>ref|NM_009380.1| Mus musculus thyroid hormone receptor beta (Thrb), mRNA
Length = 1837
Score = 700 bits (1807), Expect = 0.0
Identities = 338/367 (92%), Positives = 345/367 (93%)
Frame = +3
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKYEGKC+ID
Sbjct: 627 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 806
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 807 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEP 986
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
TDEEWELIK VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 987 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 1166
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEM
Sbjct: 1167IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 1346
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 1347AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 1526
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1527YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1706
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1707FLEVFED 1727
>gb|S62756.1|S62756 hormone receptor beta subunit [mice, thyroid, mRNA, 1571 nt]
Length = 1571
Score = 700 bits (1807), Expect = 0.0
Identities = 338/367 (92%), Positives = 345/367 (93%)
Frame = +3
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKYEGKC+ID
Sbjct: 342 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 521
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 522 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEP 701
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
TDEEWELIK VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 702 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 881
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEM
Sbjct: 882 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 1061
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 1062AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 1241
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1242YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1421
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1422FLEVFED 1442
>gb|J03819.1|RATT3REC Rattus norvegicus (clone erb62) thyroid (T3) hormone receptor mRNA,
complete cds
Length = 4535
Score = 700 bits (1807), Expect = 0.0
Identities = 338/367 (92%), Positives = 345/367 (93%)
Frame = +1
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKYEGKC+ID
Sbjct: 532 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 711
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 712 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEP 891
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
TDEEWELIK VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 892 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 1071
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEM
Sbjct: 1072IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 1251
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 1252AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 1431
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1432YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1611
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1612FLEVFED 1632
>gb|L27344.1|RANCERBAB Rana catesbeiana (c-erbA-beta) mRNA, complete cds
Length = 1435
Score = 699 bits (1804), Expect = 0.0
Identities = 341/369 (92%), Positives = 347/369 (93%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCV
Sbjct: 13 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCV 192
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQKT+ KP
Sbjct: 193 IDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKDELQKTLVQKP 372
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEWELI++VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF
Sbjct: 373 EPTPEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 552
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG
Sbjct: 553 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 732
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDDTEVALLQAVLLMSSDRPGL VERI
Sbjct: 733 EMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDTEVALLQAVLLMSSDRPGLSSVERI 912
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQEGFLLAFEHYINYRKH+VAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 913 EKCQEGFLLAFEHYINYRKHNVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1092
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1093PLFLEVFED 1119
>gb|J03933.1|RATCERBAB Rat thyroid receptor hormone beta (c-erbA-beta) mRNA, complete cds
Length = 2430
Score = 699 bits (1803), Expect = 0.0
Identities = 337/367 (91%), Positives = 345/367 (93%)
Frame = +2
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKYEGKC+ID
Sbjct: 533 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 712
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 713 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEP 892
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
TDEEWELIK VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGG+VDLEAFS FTK
Sbjct: 893 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGQVDLEAFSHFTK 1072
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEM
Sbjct: 1073IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 1252
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 1253AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 1432
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1433YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1612
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1613FLEVFED 1633
>ref|NM_000461.1| Homo sapiens thyroid hormone receptor, beta (erythroblastic
leukemia viral (v-erb-a) oncogene homolog 2, avian)
(THRB), mRNA
Length = 1698
Score = 696 bits (1797), Expect = 0.0
Identities = 338/367 (92%), Positives = 342/367 (93%)
Frame = +1
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCVID
Sbjct: 568 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 747
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 748 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEP 927
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
TDEEWELIK VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 928 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 1107
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 1108IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 1287
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 1288AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 1467
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL PPL
Sbjct: 1468YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELLPPL 1647
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1648FLEVFED 1668
>emb|X04707.1|HSERBAR Human c-erb-A mRNA for thyroid hormone receptor
Length = 1698
Score = 696 bits (1797), Expect = 0.0
Identities = 338/367 (92%), Positives = 342/367 (93%)
Frame = +1
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCVID
Sbjct: 568 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 747
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 748 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEP 927
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
TDEEWELIK VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 928 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 1107
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 1108IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 1287
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 1288AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 1467
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL PPL
Sbjct: 1468YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELLPPL 1647
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1648FLEVFED 1668
>gb|M26747.1|HUMCERBA Human c-erbA mRNA, complete cds
Length = 1698
Score = 696 bits (1797), Expect = 0.0
Identities = 338/367 (92%), Positives = 342/367 (93%)
Frame = +1
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCVID
Sbjct: 568 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 747
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 748 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEP 927
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
TDEEWELIK VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 928 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 1107
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 1108IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 1287
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 1288AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 1467
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL PPL
Sbjct: 1468YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELLPPL 1647
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1648FLEVFED 1668
>gb|M35360.1|XELBETAB X.laevis thyroid hormone receptor beta A5 mRNA, complete cds
Length = 1150
Score = 694 bits (1792), Expect = 0.0
Identities = 336/369 (91%), Positives = 347/369 (93%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCV
Sbjct: 13 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCV 192
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKCI VGMATDLVLDD+KRLA +QK++ KP
Sbjct: 193 IDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQKP 372
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEWELI++VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF
Sbjct: 373 EPTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 552
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG
Sbjct: 553 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 732
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGL VERI
Sbjct: 733 EMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLASVERI 912
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQEGFLLAFEHYINYRKH++AHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 913 EKCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1092
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1093PLFLEVFED 1119
>gb|M35359.1|XELBETA X.laevis thyroid hormone receptor beta A1 mRNA, complete cds
Length = 1138
Score = 693 bits (1788), Expect = 0.0
Identities = 335/369 (90%), Positives = 346/369 (92%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
M GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCV
Sbjct: 1 MEGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCV 180
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKCI VGMATDLVLDD+KRLA +QK++ KP
Sbjct: 181 IDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQKP 360
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEWELI++VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF
Sbjct: 361 EPTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 540
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG
Sbjct: 541 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 720
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGL VERI
Sbjct: 721 EMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLASVERI 900
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQEGFLLAFEHYINYRKH++AHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 901 EKCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1080
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1081PLFLEVFED 1107
>gb|M35361.1|XELBETAC X.laevis thyroid hormone receptor beta B1 mRNA, complete cds
Length = 1132
Score = 692 bits (1785), Expect = 0.0
Identities = 336/369 (91%), Positives = 346/369 (93%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCV
Sbjct: 13 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCV 192
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKC VGMATDLVLDDSKRLA +QK+I +P
Sbjct: 193 IDKVTRNQCQECRFKKCKTVGMATDLVLDDSKRLAKRKLIEENREKRRKDEIQKSIVQRP 372
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEWELI++VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF
Sbjct: 373 EPTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 552
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG
Sbjct: 553 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 732
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGL VERI
Sbjct: 733 EMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLSSVERI 912
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQEGFLLAFEHYINYRKH++AHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 913 EKCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1092
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1093PLFLEVFED 1119
>gb|M35362.1|XELBETAD X.laevis thyroid hormone receptor beta B2 mRNA, complete cds
Length = 1255
Score = 690 bits (1781), Expect = 0.0
Identities = 335/369 (90%), Positives = 346/369 (92%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
+SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCV
Sbjct: 136 VSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCV 315
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKC VGMATDLVLDDSKRLA +QK+I +P
Sbjct: 316 IDKVTRNQCQECRFKKCKTVGMATDLVLDDSKRLAKRKLIEENREKRRKDEIQKSIVQRP 495
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEWELI++VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF
Sbjct: 496 EPTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 675
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG
Sbjct: 676 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 855
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGL VERI
Sbjct: 856 EMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLSSVERI 1035
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQEGFLLAFEHYINYRKH++AHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1036EKCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1215
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1216PLFLEVFED 1242
>gb|AF109732.1|AF109732 Danio rerio thyroid hormone receptor beta 1 mRNA, complete cds
Length = 2198
Score = 677 bits (1746), Expect = 0.0
Identities = 325/368 (88%), Positives = 342/368 (92%)
Frame = +3
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+PTY+CKYEGKCVI
Sbjct: 420 NGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVI 599
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQKT+ +PE
Sbjct: 600 DKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREELQKTVWDRPE 779
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 181
PT EEWE+I++VTEAH+ATNAQG+HWKQKRKFLPEDIG APIVNAPEG KVD+EAFSQFT
Sbjct: 780 PTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLPEDIGSAPIVNAPEGNKVDIEAFSQFT 959
Query: 182 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 241
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTLNGE
Sbjct: 960 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLNGE 1139
Query: 242 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIE 301
MAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQAV+L+SSDRPGL VERIE
Sbjct: 1140MAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSDRPGLTSVERIE 1319
Query: 302 KCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
+CQE FLLAFEHYINYRKH VAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 1320RCQEEFLLAFEHYINYRKHKVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1499
Query: 362 LFLEVFED 369
LFLEVFED
Sbjct: 1500LFLEVFED 1523
>gb|AF302252.1|AF302252 Salmo salar thyroid hormone receptor beta small isoform (TR-beta2)
mRNA, complete cds
Length = 1220
Score = 663 bits (1711), Expect = 0.0
Identities = 316/368 (85%), Positives = 339/368 (91%)
Frame = +1
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+PTY+CKYE KC+I
Sbjct: 70 NGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCII 249
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQKT+ +PE
Sbjct: 250 DKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRPE 429
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 181
P+ EEW+LI++VTEAH++TNAQG+HWKQKRKFLPEDIGQAP++NAPEG KVD+EAFSQFT
Sbjct: 430 PSQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLPEDIGQAPVINAPEGSKVDIEAFSQFT 609
Query: 182 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 241
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE
Sbjct: 610 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 789
Query: 242 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIE 301
MAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDD+EVALLQ V+L+SSDRPGL V+RIE
Sbjct: 790 MAVTRGQLKNGGLGVVSDAIFDLGLSLSSFHLDDSEVALLQTVILLSSDRPGLTSVDRIE 969
Query: 302 KCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
+CQE FLLAFEHYINYRKH VA FWPKLLMKVTDLRMIGACHASRFLHMKVECP ELFPP
Sbjct: 970 RCQEEFLLAFEHYINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPP 1149
Query: 362 LFLEVFED 369
LFLEVFED
Sbjct: 1150LFLEVFED 1173
>gb|AF302251.1|AF302251 Salmo salar thyroid hormone receptor beta large isoform (TR-beta1)
mRNA, complete cds
Length = 1247
Score = 655 bits (1691), Expect = 0.0
Identities = 316/377 (83%), Positives = 339/377 (89%), Gaps = 9/377 (2%)
Frame = +1
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+PTY+CKYE KC+I
Sbjct: 70 NGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCII 249
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQKT+ +PE
Sbjct: 250 DKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRPE 429
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFL---------PEDIGQAPIVNAPEGGKV 172
P+ EEW+LI++VTEAH++TNAQG+HWKQKRKFL PEDIGQAP++NAPEG KV
Sbjct: 430 PSQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLSAVGVKETKPEDIGQAPVINAPEGSKV 609
Query: 173 DLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPE 232
D+EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPE
Sbjct: 610 DIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPE 789
Query: 233 SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRP 292
SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDD+EVALLQ V+L+SSDRP
Sbjct: 790 SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGLSLSSFHLDDSEVALLQTVILLSSDRP 969
Query: 293 GLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 352
GL V+RIE+CQE FLLAFEHYINYRKH VA FWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 970 GLTSVDRIERCQEEFLLAFEHYINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHMKV 1149
Query: 353 ECPTELFPPLFLEVFED 369
ECP ELFPPLFLEVFED
Sbjct: 1150ECPNELFPPLFLEVFED 1200
>dbj|D45245.1|PAITHRB Flounder mRNA for thyroid hormone receptor beta, complete cds
Length = 1369
Score = 655 bits (1690), Expect = 0.0
Identities = 320/377 (84%), Positives = 338/377 (88%), Gaps = 9/377 (2%)
Frame = +2
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+PTY+CKYEGKCVI
Sbjct: 170 NGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVI 349
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQKT+ + E
Sbjct: 350 DKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRLE 529
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFL---------PEDIGQAPIVNAPEGGKV 172
PT EEW+LI++VTEAH+ATNAQG+HWKQKRKFL PE+IGQA + N PEG KV
Sbjct: 530 PTQEEWDLIRMVTEAHMATNAQGNHWKQKRKFLSAAGVKEDKPEEIGQASMANTPEGNKV 709
Query: 173 DLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPE 232
D+EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPE
Sbjct: 710 DIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPE 889
Query: 233 SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRP 292
SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQAV+L+SSDRP
Sbjct: 890 SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSDRP 1069
Query: 293 GLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 352
GL VERIE CQE FLLAFEHYINYRKH +AHFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1070GLSSVERIEPCQEEFLLAFEHYINYRKHKLAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1249
Query: 353 ECPTELFPPLFLEVFED 369
ECPTELFPPLFLEVFED
Sbjct: 1250ECPTELFPPLFLEVFED 1300
>emb|Y00987.1|GGCERBAR Chicken c-erbA mRNA for thyroid hormone receptor
Length = 1538
Score = 644 bits (1660), Expect = 0.0
Identities = 309/369 (83%), Positives = 332/369 (89%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+G CV
Sbjct: 397 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCV 576
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 577 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 756
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQKRKFLPEDIGQ+P+ + P+G KVDLEAFS+F
Sbjct: 757 SPSAEEWELIHVVTEAHRSTNAQGSHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEF 936
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 937 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 1116
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CV++I
Sbjct: 1117EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKI 1296
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1297EKCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1476
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1477PLFLEVFED 1503
>emb|Z50080.1|CMATHREC C.moschata mRNA for alpha-thyroid hormone receptor
Length = 1205
Score = 637 bits (1643), Expect = 0.0
Identities = 306/366 (83%), Positives = 329/366 (89%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+G CV
Sbjct: 106 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCV 285
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 286 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 465
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQKRKFLPEDIGQ+P+ + P+G KVDLEAFS+F
Sbjct: 466 SPSAEEWELIHVVTEAHRSTNAQGSHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEF 645
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 646 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 825
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CV++I
Sbjct: 826 EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKI 1005
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1006EKCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1185
Query: 361 PLFLEV 366
PLFLEV
Sbjct: 1186PLFLEV 1203
>emb|AJ002363.1|APAJ2363 Aptenodytes patagonicus mRNA for alpha-thyroid hormone receptor
Length = 1205
Score = 635 bits (1638), Expect = e-180
Identities = 306/366 (83%), Positives = 328/366 (89%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+G CV
Sbjct: 106 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCV 285
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 286 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 465
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQKRKFLPEDIGQ+P+ + P+G KVDLEAFS+F
Sbjct: 466 NPSAEEWELIHVVTEAHRSTNAQGSHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEF 645
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 646 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 825
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CVE+I
Sbjct: 826 EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVEKI 1005
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFWPKLLMKVTDLRMI ACHASRFLHMKVECPTELFP
Sbjct: 1006EKCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIRACHASRFLHMKVECPTELFP 1185
Query: 361 PLFLEV 366
PLFLEV
Sbjct: 1186PLFLEV 1203
>emb|X55005.1|HSCERBAR Homo sapiens mRNA for thyroid hormone receptor alpha 1 THRA1,
(c-erbA-1 gene)
Length = 2288
Score = 629 bits (1622), Expect = e-178
Identities = 301/369 (81%), Positives = 330/369 (88%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 581 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 760
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 761 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 940
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 941 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 1120
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 1121TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1300
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1301EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1480
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1481EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1660
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1661PLFLEVFED 1687
>gb|M24748.1|HUMTHRA1A Human thyroid hormone receptor alpha 1 (TR-alpha-1) gene, complete
cds
Length = 1876
Score = 629 bits (1622), Expect = e-178
Identities = 301/369 (81%), Positives = 330/369 (88%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 187 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 366
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 367 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 546
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 547 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 726
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 727 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 906
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 907 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1086
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1087EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1266
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1267PLFLEVFED 1293
>gb|BC008851.1|BC008851 Homo sapiens, thyroid hormone receptor, clone MGC:14305
IMAGE:4137980, mRNA, complete cds
Length = 3053
Score = 629 bits (1622), Expect = e-178
Identities = 301/369 (81%), Positives = 330/369 (88%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 770 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 949
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 950 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 1129
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 1130 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 1309
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 1310 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1489
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1490 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1669
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1670 EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1849
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1850 PLFLEVFED 1876
>emb|X07750.1|MMCERBA1 Mouse c-erbA alpha1 mRNA for thyroid hormone receptor
Length = 1233
Score = 629 bits (1621), Expect = e-178
Identities = 300/369 (81%), Positives = 330/369 (89%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 115 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 294
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 295 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 474
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 475 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 654
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 655 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 834
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 835 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1014
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1015EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1194
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1195PLFLEVFED 1221
>gb|L76285.1|XELXLTH Xenopus laevis thyroid hormone alpha B receptor mRNA, complete cds
Length = 1406
Score = 629 bits (1621), Expect = e-178
Identities = 300/368 (81%), Positives = 329/368 (88%)
Frame = +2
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYLDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+G C+I
Sbjct: 263 AGYIPSYLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCII 442
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KT+ +PE
Sbjct: 443 DKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRVRRRKEEMIKTLQQRPE 622
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 181
P+ EEWELI+IVTEAH +TNAQGSHWKQ+RKFLPEDIGQ+P+ + P+G KVDLEAFS+FT
Sbjct: 623 PSSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFT 802
Query: 182 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 241
KIITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GE
Sbjct: 803 KIITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGE 982
Query: 242 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIE 301
MAV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL+C ++IE
Sbjct: 983 MAVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIE 1162
Query: 302 KCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
KCQE +LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 1163KCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1342
Query: 362 LFLEVFED 369
LFLEVFED
Sbjct: 1343LFLEVFED 1366
>emb|Z68308.1|OAERBAAL1 O.aries mRNA for thyroid hormone receptor alpha1
Length = 2463
Score = 629 bits (1621), Expect = e-178
Identities = 300/369 (81%), Positives = 330/369 (89%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 629 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 808
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 809 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 988
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 989 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 1168
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 1169TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1348
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1349EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1528
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1529EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1708
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1709PLFLEVFED 1735
>emb|AJ005797.1|SSAJ5797 Sus scrofa mRNA for thyroid hormone receptor alpha 1 (c-erbA-alpha
1)
Length = 1906
Score = 629 bits (1621), Expect = e-178
Identities = 300/369 (81%), Positives = 330/369 (89%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 251 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 430
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 431 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 610
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 611 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 790
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 791 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 970
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 971 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1150
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1151EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1330
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1331PLFLEVFED 1357
>emb|X12744.1|RNCERBATR Rat mRNA for c-erb-A thyroid hormone receptor
Length = 1775
Score = 629 bits (1621), Expect = e-178
Identities = 300/369 (81%), Positives = 330/369 (89%)
Frame = +3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 81 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 260
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 261 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 440
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 441 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 620
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 621 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 800
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 801 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 980
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 981 EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1160
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1161PLFLEVFED 1187
>gb|M35343.1|XELTHYA Xenopus laevis thyroid hormone receptor alpha A mRNA, complete cds
Length = 1406
Score = 627 bits (1617), Expect = e-178
Identities = 299/368 (81%), Positives = 328/368 (88%)
Frame = +2
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYLDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+G C+I
Sbjct: 263 AGYIPSYLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCII 442
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DK+TRNQCQ CRFKKCI VGMA DLVLDD KR+A + KT+ +PE
Sbjct: 443 DKITRNQCQLCRFKKCIAVGMAMDLVLDDGKRVAKRKLIEENRQRRRKEEMIKTLQQRPE 622
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 181
P+ EEWELI+IVTEAH +TNAQGSHWKQ+RKFLPEDIGQ+P+ + P+G KVDLEAFS+FT
Sbjct: 623 PSSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFT 802
Query: 182 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 241
KIITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GE
Sbjct: 803 KIITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGE 982
Query: 242 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIE 301
MAV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL+C ++IE
Sbjct: 983 MAVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIE 1162
Query: 302 KCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
KCQE +LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 1163KCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1342
Query: 362 LFLEVFED 369
LFLEVFED
Sbjct: 1343LFLEVFED 1366
>gb|M18028.1|RATTHR Rat thyroid hormone receptor mRNA, complete cds
Length = 2079
Score = 627 bits (1617), Expect = e-178
Identities = 299/369 (81%), Positives = 329/369 (89%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 439 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 618
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 619 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 798
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 799 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 978
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 979 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1158
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EM V R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1159EMTVKRKQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1338
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1339EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1518
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1519PLFLEVFED 1545
>gb|L06064.1|RANCERBAA Rana catesbeiana c-erbA-alpha mRNA, complete cds
Length = 1490
Score = 627 bits (1616), Expect = e-178
Identities = 300/368 (81%), Positives = 327/368 (88%)
Frame = +3
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYL KDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+G C+I
Sbjct: 162 AGYIPSYLTKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCII 341
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KT+ +PE
Sbjct: 342 DKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKTLQQRPE 521
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 181
P+ EEWELI+IVTEAH +TNAQGSHWKQ+RKFLPEDIGQ P+ + P+ KVDLEAFS+FT
Sbjct: 522 PSSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQNPMASMPDSDKVDLEAFSEFT 701
Query: 182 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 241
KIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GE
Sbjct: 702 KIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGE 881
Query: 242 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIE 301
MAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+C ++IE
Sbjct: 882 MAVKREQLKNGGLGVVSDAIFDLGRSLSAFNLDDTEVALLQAVLLMSSDRTGLICTDKIE 1061
Query: 302 KCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
KCQE +LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 1062KCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1241
Query: 362 LFLEVFED 369
LFLEVFED
Sbjct: 1242LFLEVFED 1265
>emb|X17385.1|XLTHR Xenopus mRNA for thyroid hormone receptor
Length = 2301
Score = 627 bits (1616), Expect = e-178
Identities = 299/368 (81%), Positives = 329/368 (89%)
Frame = +1
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPS+LDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+G C+I
Sbjct: 601 AGYIPSHLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCII 780
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KT+ +PE
Sbjct: 781 DKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRQRRRKEEMIKTLQQRPE 960
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 181
P+ EEWELI+IVTEAH +TNAQGSHWKQ+RKFLPEDIGQ+P+ + P+G KVDLEAFS+FT
Sbjct: 961 PSSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFT 1140
Query: 182 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 241
KIITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GE
Sbjct: 1141KIITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGE 1320
Query: 242 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIE 301
MAV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL+C ++IE
Sbjct: 1321MAVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIE 1500
Query: 302 KCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
KCQE +LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 1501KCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1680
Query: 362 LFLEVFED 369
LFLEVFED
Sbjct: 1681LFLEVFED 1704
>emb|X51983.1|MMCERBA Mouse c-erbA-alpha mRNA for thyroid hormone receptor
Length = 1440
Score = 627 bits (1616), Expect = e-178
Identities = 299/369 (81%), Positives = 329/369 (89%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 119 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 298
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRN CQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 299 IDKITRNHCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 478
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 479 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 658
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 659 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 838
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 839 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1018
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP
Sbjct: 1019EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 1198
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1199PLFLEVFED 1225
>emb|AJ002300.1|PAAJ2300 Pygoscelis adeliae mRNA for thyroid hormone receptor alpha
Length = 1205
Score = 622 bits (1604), Expect = e-176
Identities = 301/366 (82%), Positives = 323/366 (88%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITC GCKGFFRRTIQKNLHPTYSCKY+G CV
Sbjct: 106 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCAGCKGFFRRTIQKNLHPTYSCKYDGCCV 285
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVL DSKR+A + K++ H+P
Sbjct: 286 IDKITRNQCQLCRFKKCISVGMAMDLVLYDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 465
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQKRKFLPEDIGQ+P+ + P+G KVDLEAFS+F
Sbjct: 466 NPSAEEWELIHVVTEAHRSTNAQGSHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEF 645
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPE TLTL+G
Sbjct: 646 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPEGGTLTLSG 825
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGL VVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CVE+I
Sbjct: 826 EMAVKREQLKNGGLRVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVEKI 1005
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFWPKLLMKVTDLRMI ACHASRFLHMKVECPTELFP
Sbjct: 1006EKCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIRACHASRFLHMKVECPTELFP 1185
Query: 361 PLFLEV 366
PLFLEV
Sbjct: 1186PLFLEV 1203
>gb|M35344.1|XELTHYB X.laevis thyroid hormone receptor alpha B mRNA, complete cds
Length = 1406
Score = 621 bits (1601), Expect = e-176
Identities = 298/368 (80%), Positives = 326/368 (87%)
Frame = +2
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYLDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+G C+I
Sbjct: 263 AGYIPSYLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCII 442
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DK+TRNQCQ CRFKKCI VGMA DL LDDSKR+A + KT+ PE
Sbjct: 443 DKITRNQCQLCRFKKCIAVGMAMDLDLDDSKRVAKRKLIEEDRVRRRKEEMIKTLQQCPE 622
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 181
P+ EEWELI+IVTEAH +TNAQGSHWKQ+RKFLPEDIGQ+P+ + P+G KVDLEAFS+FT
Sbjct: 623 PSSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFT 802
Query: 182 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 241
KIITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GE
Sbjct: 803 KIITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGE 982
Query: 242 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIE 301
MAV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL+C ++IE
Sbjct: 983 MAVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIE 1162
Query: 302 KCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
KCQE +LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHAS FLHMKVECPTELFPP
Sbjct: 1163KCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASCFLHMKVECPTELFPP 1342
Query: 362 LFLEVFED 369
LFLEVFED
Sbjct: 1343LFLEVFED 1366
>gb|U54796.1|DRU54796 Danio rerio thyroid hormone receptor alpha 1 (TRa1) mRNA, complete
cds
Length = 2200
Score = 615 bits (1585), Expect = e-174
Identities = 297/367 (80%), Positives = 325/367 (87%)
Frame = +3
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GY+PSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ C+ID
Sbjct: 498 GYVPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDSCCIID 677
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
K+TRNQCQ CRF+KCI VGMA DLVLDDSKR+A + KT+ ++PEP
Sbjct: 678 KITRNQCQLCRFRKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKKEEIVKTLHNRPEP 857
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
T EWELI++VTEAH TNAQG HWKQKRKFLPEDIGQ+P + + KVDLEAFS+FTK
Sbjct: 858 TVSEWELIRMVTEAHRHTNAQGPHWKQKRKFLPEDIGQSPAPTS-DNDKVDLEAFSEFTK 1034
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 1035IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 1214
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AV+R QLKNGGLGVVSDAIFDLG SLS FNLDD+EVALLQAVLLMSSDR GL CVE+IEK
Sbjct: 1215AVSREQLKNGGLGVVSDAIFDLGKSLSQFNLDDSEVALLQAVLLMSSDRSGLTCVEKIEK 1394
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
CQE +LLAFEHYIN+RKH+++HFWPKLLMKVT+LRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1395CQEMYLLAFEHYINHRKHNISHFWPKLLMKVTNLRMIGACHASRFLHMKVECPTELFPPL 1574
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1575FLEVFED 1595
>gb|AF146775.1|AF146775 Salmo salar thyroid hormone receptor alpha (TR-alpha) mRNA,
complete cds
Length = 1436
Score = 613 bits (1581), Expect = e-174
Identities = 297/369 (80%), Positives = 320/369 (86%)
Frame = +3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
+ GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP YSCKY+G C+
Sbjct: 273 VQGYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYDGCCI 452
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRF+KCI V MA DLVLDDSKR+A + KT+ +P
Sbjct: 453 IDKITRNQCQLCRFRKCIAVCMAMDLVLDDSKRVAKRRLIEENREKRKKDEIVKTLQARP 632
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EP EWELI+ VTEAH TNAQGSHWKQKRKFLPEDIGQ+P P+G KVDLEAFS+F
Sbjct: 633 EPDSSEWELIRHVTEAHRHTNAQGSHWKQKRKFLPEDIGQSPRAPTPDGDKVDLEAFSEF 812
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 813 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 992
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDD+EVALLQAVLLMSSDR GL V++I
Sbjct: 993 EMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDSEVALLQAVLLMSSDRSGLTLVDKI 1172
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECP ELFP
Sbjct: 1173EKCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFP 1352
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1353PLFLEVFED 1379
>dbj|D16462.1|PAITHRAB Japanese flounder mRNA for thyroid hormone receptor alpha B,
complete cds
Length = 1273
Score = 610 bits (1574), Expect = e-173
Identities = 295/369 (79%), Positives = 323/369 (86%), Gaps = 1/369 (0%)
Frame = +1
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ C+I
Sbjct: 79 TGYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDCCCII 258
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KT+ ++PE
Sbjct: 259 DKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLIEENRERRKKEEIVKTLQNRPE 438
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 181
PT EWELI++VTEAH TNAQG+ WKQKRKFLP+ IGQ+P+ +G KVDLEAFS+FT
Sbjct: 439 PTGAEWELIRMVTEAHRHTNAQGAQWKQKRKFLPDKIGQSPVAPTSDGDKVDLEAFSEFT 618
Query: 182 KIITPAITRVVDFAKKLPMFCE-LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
KIITPAITRVVDFAKKLPMF E LPCEDQIILLKGCCMEIMSLRAA+RYDPESETLTL+G
Sbjct: 619 KIITPAITRVVDFAKKLPMFSEQLPCEDQIILLKGCCMEIMSLRAAMRYDPESETLTLSG 798
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVALLQAVLLMSSDR GL C+++I
Sbjct: 799 EMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVALLQAVLLMSSDRSGLTCMDKI 978
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECP ELFP
Sbjct: 979 EKCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFP 1158
Query: 361 PLFLEVFED 369
PLFLEVFED
Sbjct: 1159PLFLEVFED 1185
>gb|AF143296.1|AF143296 Hippoglossus hippoglossus thyroid hormone receptor-alpha mRNA,
complete cds
Length = 1392
Score = 607 bits (1565), Expect = e-172
Identities = 293/367 (79%), Positives = 318/367 (85%)
Frame = +1
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP YSCKYEG C+ID
Sbjct: 280 GYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIID 459
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +T+ +PEP
Sbjct: 460 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKREEMVRTLQVRPEP 639
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
EWELI++ T+AH TNAQGS WKQKRKFL +DIGQ P+V +G KVDLEAFS+FTK
Sbjct: 640 DTAEWELIRMATDAHRHTNAQGSSWKQKRKFLSDDIGQGPMVPTSDGDKVDLEAFSEFTK 819
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
I+TPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 820 IMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 999
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVAL+QAVLLMSSDR GL +E+IE+
Sbjct: 1000AVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVALMQAVLLMSSDRSGLTSLEKIEQ 1179
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
CQE +LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVEC +ELFPPL
Sbjct: 1180CQEAYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECSSELFPPL 1359
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1360FLEVFED 1380
>dbj|D16461.1|PAITHRAA1 Japanese flounder mRNA for thyroid hormone receptor alpha A,
complete cds
Length = 1411
Score = 606 bits (1562), Expect = e-171
Identities = 291/367 (79%), Positives = 318/367 (86%)
Frame = +3
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEG C+ID
Sbjct: 291 GYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIID 470
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +T+ +PEP
Sbjct: 471 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKREEMVRTLQIRPEP 650
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
EWELI++ T+AH TNAQGS WKQKRKFL +DIGQ+P+V +G KVDLEAFS+FTK
Sbjct: 651 DTAEWELIRMATDAHRHTNAQGSSWKQKRKFLSDDIGQSPMVPTSDGDKVDLEAFSEFTK 830
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
I+TPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLN EM
Sbjct: 831 IMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNSEM 1010
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AV R QLKNGGLGVVSDAIFDLG L FNLDDTEVAL+QAVLLMSSDR G C+E+IE+
Sbjct: 1011AVKREQLKNGGLGVVSDAIFDLGKELGQFNLDDTEVALMQAVLLMSSDRSGHQCMEKIEQ 1190
Query: 303 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
CQE +LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECP+ELFPPL
Sbjct: 1191CQEAYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPSELFPPL 1370
Query: 363 FLEVFED 369
FLEVFED
Sbjct: 1371FLEVFED 1391
>gb|M17870.1|ACBERBAR Avian erythroblastosis virus strain ES4, mutant td r12 polyprotein
gene, partial cds
Length = 1751
Score = 598 bits (1542), Expect = e-169
Identities = 290/360 (80%), Positives = 314/360 (86%)
Frame = +3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHPTYSC Y+G CV
Sbjct: 660 MSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCV 839
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 840 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 1019
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS+F
Sbjct: 1020 SPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEF 1199
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 1200 TKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 1379
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CV++I
Sbjct: 1380 EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKI 1559
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFWPKLLMKV DLRMIGA HASRFLHMKVECPTEL P
Sbjct: 1560 EKCQESYLLAFEHYINYRKHNIPHFWPKLLMKVADLRMIGAYHASRFLHMKVECPTELSP 1739
>gb|M32090.1|ACBERBABG Avian erythroblastosis virus gag, erbA and erbB sequences
Length = 1944
Score = 595 bits (1534), Expect = e-168
Identities = 289/360 (80%), Positives = 313/360 (86%)
Frame = +3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHPTYSC Y+G CV
Sbjct: 579 MSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCV 758
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 759 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 938
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS+F
Sbjct: 939 SPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEF 1118
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 1119TKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 1298
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CV++I
Sbjct: 1299EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKI 1478
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL P
Sbjct: 1479EKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTELSP 1658
>emb|X12707.1|AEVPDNA Avian erythroblastosis virus provirus DNA (pCR-1)
Length = 6373
Score = 595 bits (1534), Expect = e-168
Identities = 289/360 (80%), Positives = 313/360 (86%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHPTYSC Y+G CV
Sbjct: 2344 MSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCV 2523
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 2524 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 2703
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS+F
Sbjct: 2704 SPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEF 2883
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 2884 TKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 3063
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CV++I
Sbjct: 3064 EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKI 3243
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL P
Sbjct: 3244 EKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTELSP 3423
>emb|Y00044.1|REAEVERB Avian erythroblastosis virus gag, erbA and erbB sequences
Length = 2354
Score = 595 bits (1534), Expect = e-168
Identities = 289/360 (80%), Positives = 313/360 (86%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHPTYSC Y+G CV
Sbjct: 578 MSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCV 757
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 758 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 937
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS+F
Sbjct: 938 SPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEF 1117
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 1118TKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 1297
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CV++I
Sbjct: 1298EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKI 1477
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL P
Sbjct: 1478EKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTELSP 1657
>gb|M17869.1|ACBERBATD Avian erythroblastosis virus strain ES4, mutant td 359 polyprotein
gene, partial cds
Length = 1670
Score = 595 bits (1533), Expect = e-168
Identities = 289/360 (80%), Positives = 313/360 (86%)
Frame = +3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHPTYSC Y+G CV
Sbjct: 579 MSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCV 758
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 759 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 938
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
+ EEWELI +VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS+F
Sbjct: 939 SRSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEF 1118
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 1119TKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 1298
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CV++I
Sbjct: 1299EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKI 1478
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFWPKLLMKV DLRMIGA HASRFLHMKVECPTEL P
Sbjct: 1479EKCQESYLLAFEHYINYRKHNIPHFWPKLLMKVADLRMIGAYHASRFLHMKVECPTELSP 1658
>gb|K02006.1|ACBERBA Avian erythroblastosis virus polyprotein gag-p75-erbA and erbB
protein genes, partial cds
Length = 2012
Score = 594 bits (1532), Expect = e-168
Identities = 289/360 (80%), Positives = 313/360 (86%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHPTYSC Y+G CV
Sbjct: 238 MSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCV 417
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 418 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 597
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS+F
Sbjct: 598 SPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEF 777
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 778 TKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 957
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CV++I
Sbjct: 958 EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKI 1137
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL P
Sbjct: 1138EKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTELPP 1317
>emb|X52211.1|AEVVER Avian erythroblastosis virus v-erb-A and v-erb-B oncogenes
Length = 3110
Score = 592 bits (1526), Expect = e-167
Identities = 287/360 (79%), Positives = 312/360 (85%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPS LDKDE CVVCGDK TGYHYRCITCEGCK FFRRTIQKNLHPTYSC Y+G CV
Sbjct: 130 MSGYIPSCLDKDEQCVVCGDKPTGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCV 309
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ H+P
Sbjct: 310 IDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRP 489
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
P+ EEWELI +VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAF++F
Sbjct: 490 SPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFTEF 669
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+G
Sbjct: 670 TKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSG 849
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL+CV++I
Sbjct: 850 EMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKI 1029
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
EKCQE +LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL P
Sbjct: 1030EKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTELSP 1209
>emb|Z68307.1|OAERBABT1 O.aries mRNA for thyroid hormone receptor beta1
Length = 1592
Score = 590 bits (1522), Expect = e-167
Identities = 287/318 (90%), Positives = 296/318 (92%)
Frame = +1
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCVID
Sbjct: 637 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 816
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQ+++GHKPEP
Sbjct: 817 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQRSMGHKPEP 996
Query: 123 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
TD+EWELIK VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 997 TDQEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 1176
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 1177IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 1356
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
AVTR QLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 1357AVTRRQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 1536
Query: 303 CQEGFLLAFEHYINYRKH 320
Q+ FLLAFEHYINYR++
Sbjct: 1537YQDSFLLAFEHYINYRRN 1590
>emb|X07752.1|MMCERBA3 Mouse c-erbA alpha3 mRNA for thyroid hormone receptor
Length = 1240
Score = 553 bits (1425), Expect = e-156
Identities = 264/339 (77%), Positives = 296/339 (86%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 115 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 294
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 295 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 474
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 475 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 654
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 655 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 834
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 835 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1014
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMI 339
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +R +
Sbjct: 1015EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKGPQVRQL 1131
>gb|M24899.1|HUMEAR7A Human triiodothyronine (ear7) mRNA, complete cds
Length = 2309
Score = 552 bits (1423), Expect = e-155
Identities = 264/337 (78%), Positives = 296/337 (87%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 526 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 705
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 706 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 885
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 886 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 1065
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 1066TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1245
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1246EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1425
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1426EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1536
>gb|BC000261.1|BC000261 Homo sapiens, thyroid hormone receptor, alpha (avian erythroblastic
leukemia viral (v-erb-a) oncogene homolog), clone
MGC:2353 IMAGE:3501886, mRNA, complete cds
Length = 2415
Score = 552 bits (1423), Expect = e-155
Identities = 264/337 (78%), Positives = 296/337 (87%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 539 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 718
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 719 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 898
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 899 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 1078
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 1079TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1258
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1259EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1438
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1439EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1549
>ref|XM_083987.1| Homo sapiens thyroid hormone receptor, alpha (erythroblastic
leukemia viral (v-erb-a) oncogene homolog, avian)
(THRA), mRNA
Length = 2115
Score = 552 bits (1423), Expect = e-155
Identities = 264/337 (78%), Positives = 296/337 (87%)
Frame = +3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 450 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 629
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 630 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 809
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 810 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 989
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 990 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1169
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1170EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1349
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1350EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1460
>ref|XM_008585.3| Homo sapiens thyroid hormone receptor, alpha (avian erythroblastic
leukemia viral (v-erb-a) oncogene homolog) (THRA), mRNA
Length = 2115
Score = 552 bits (1423), Expect = e-155
Identities = 264/337 (78%), Positives = 296/337 (87%)
Frame = +3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 450 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 629
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 630 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 809
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 810 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 989
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 990 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1169
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1170EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1349
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1350EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1460
>gb|J03239.1|HUMTHRA2A Human c-erbA-alpha-2 gene encoding thyroid hormone receptor type
alpha-2 mRNA, complete cds, clone hTR-alpha-2
Length = 2015
Score = 552 bits (1423), Expect = e-155
Identities = 264/337 (78%), Positives = 296/337 (87%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 172 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 351
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 352 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 531
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 532 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 711
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 712 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 891
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 892 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1071
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1072EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1182
>gb|BC002728.1|BC002728 Homo sapiens, thyroid hormone receptor, alpha (avian erythroblastic
leukemia viral (v-erb-a) oncogene homolog), clone
MGC:3645 IMAGE:3628335, mRNA, complete cds
Length = 2422
Score = 552 bits (1423), Expect = e-155
Identities = 264/337 (78%), Positives = 296/337 (87%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 548 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 727
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 728 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 907
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 908 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 1087
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 1088TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1267
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1268EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1447
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1448EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1558
>emb|AJ005798.1|SSAJ5798 Sus scrofa mRNA for thyroid hormone receptor alpha 2 (c-erbA-alpha
2)
Length = 2034
Score = 552 bits (1422), Expect = e-155
Identities = 263/337 (78%), Positives = 296/337 (87%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 251 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 430
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 431 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 610
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 611 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 790
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 791 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 970
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 971 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1150
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1151EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1261
>emb|X07751.1|MMCERBA2 Mouse c-erbA alpha2 mRNA for thyroid hormone receptor
Length = 1357
Score = 552 bits (1422), Expect = e-155
Identities = 263/337 (78%), Positives = 296/337 (87%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 115 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 294
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 295 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 474
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 475 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 654
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 655 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 834
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 835 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1014
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1015EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1125
>emb|X07409.1|RNTRAVI Rat c-erb-A alpha mRNA for T3 receptor alpha
Length = 1910
Score = 552 bits (1422), Expect = e-155
Identities = 263/337 (78%), Positives = 296/337 (87%)
Frame = +3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 78 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 257
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 258 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 437
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 438 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 617
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 618 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 797
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 798 EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 977
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 978 EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1088
>ref|NM_003250.1| Homo sapiens thyroid hormone receptor, alpha (erythroblastic
leukemia viral (v-erb-a) oncogene homolog, avian)
(THRA), mRNA
Length = 2112
Score = 550 bits (1417), Expect = e-155
Identities = 263/337 (78%), Positives = 295/337 (87%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 448 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 627
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI V MA DLVLDDSKR+A + +++ +P
Sbjct: 628 IDKITRNQCQLCRFKKCIAVAMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 807
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 808 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 987
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 988 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1167
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1168EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1347
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1348EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1458
>emb|Y00479.1|HSERBT1 H.sapiens mRNA for thyroid hormone receptor
Length = 2112
Score = 550 bits (1417), Expect = e-155
Identities = 263/337 (78%), Positives = 295/337 (87%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 448 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCV 627
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI V MA DLVLDDSKR+A + +++ +P
Sbjct: 628 IDKITRNQCQLCRFKKCIAVAMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 807
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI I TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 808 EPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 987
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 988 TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1167
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1168EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1347
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1348EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1458
>ref|NM_031134.1| Rattus norvegicus thyroid hormone receptor alpha (Thra1), mRNA
Length = 2460
Score = 548 bits (1413), Expect = e-154
Identities = 262/337 (77%), Positives = 295/337 (86%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCE CKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 631 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCECCKGFFRRTIQKNLHPTYSCKYDSCCV 810
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 811 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 990
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 991 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 1170
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 1171TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1350
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1351EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1530
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1531EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1641
>gb|M31174.1|RATERBAA Rat c-erbA-alpha-2-related protein mRNA, complete cds
Length = 2460
Score = 548 bits (1413), Expect = e-154
Identities = 262/337 (77%), Positives = 295/337 (86%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDE CVVCGDKATGYHYRCITCE CKGFFRRTIQKNLHPTYSCKY+ CV
Sbjct: 631 MSGYIPSYLDKDEQCVVCGDKATGYHYRCITCECCKGFFRRTIQKNLHPTYSCKYDSCCV 810
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +P
Sbjct: 811 IDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRP 990
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQF 180
EPT EEW+LI + TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+F
Sbjct: 991 EPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEF 1170
Query: 181 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 240
TKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+G
Sbjct: 1171TKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSG 1350
Query: 241 EMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERI 300
EMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++I
Sbjct: 1351EMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKI 1530
Query: 301 EKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 337
EK QE +LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1531EKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1641
>gb|AF302254.1|AF302254 Scophthalmus maximus thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 987
Score = 546 bits (1406), Expect = e-153
Identities = 271/329 (82%), Positives = 289/329 (87%), Gaps = 9/329 (2%)
Frame = +1
Query: 34 GCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKR 93
GCKGFFRRTIQKNL+PTY+CKYEGKCVIDKVTRNQC+ECRFKKCI VGMATDLVLDDSKR
Sbjct: 1 GCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCRECRFKKCIVVGMATDLVLDDSKR 180
Query: 94 LAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKF 153
LA LQKT+ + EPT EEW+LI++VTEAH+ATNAQG+HWKQKRKF
Sbjct: 181 LAKRKLIEENRERRRKEELQKTVWDRLEPTQEEWDLIRMVTEAHMATNAQGNHWKQKRKF 360
Query: 154 LP---------EDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCEL 204
L EDIGQA + N PEG KVD+EAFSQFTKIITPAITRVVDFAKKLPMFCEL
Sbjct: 361 LSAAGVKEDKAEDIGQASMANTPEGNKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCEL 540
Query: 205 PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDL 264
PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR QLKNGGLGVVSDAIFDL
Sbjct: 541 PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRDQLKNGGLGVVSDAIFDL 720
Query: 265 GMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAH 324
G+SLS+FNLDD+EVALLQAV+L+SSDRPGL VERIE+CQE FLLAFEHYINYRKH VAH
Sbjct: 721 GVSLSAFNLDDSEVALLQAVILLSSDRPGLSSVERIERCQEEFLLAFEHYINYRKHKVAH 900
Query: 325 FWPKLLMKVTDLRMIGACHASRFLHMKVE 353
FWPKLLMKVTDLRMIGACHASRFLHMKVE
Sbjct: 901 FWPKLLMKVTDLRMIGACHASRFLHMKVE 987
>gb|AF302243.1|AF302243 Takifugu rubripes thyroid hormone receptor alpha (TR-alpha) mRNA,
partial cds
Length = 963
Score = 509 bits (1311), Expect = e-142
Identities = 248/321 (77%), Positives = 273/321 (84%)
Frame = +1
Query: 31 TCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDD 90
TCEGCKGFFRRTIQKNLHP YSCKYEG C+IDK+TRNQCQ CRFKKC VGMA DLVLDD
Sbjct: 1 TCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCTSVGMAMDLVLDD 180
Query: 91 SKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQK 150
SKR+A + + + +PEP EWELI++VTEAH TNA+GS WKQK
Sbjct: 181 SKRVAKRRLIEENRQKRKKEEMVRMLQARPEPDTAEWELIRMVTEAHRHTNAEGSTWKQK 360
Query: 151 RKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQI 210
RKFL +DIGQ P+V + +G KVDLEAFS+FTKI+TPAITRVVDFAKKLPMF ELPCEDQI
Sbjct: 361 RKFLSDDIGQGPVVPSSDGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQI 540
Query: 211 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 270
ILLKGCCMEIMSLRAAVRYDPESETLTL+G++AV R QLKNGGLGVVSDAIFDLG SL+
Sbjct: 541 ILLKGCCMEIMSLRAAVRYDPESETLTLSGKIAVKREQLKNGGLGVVSDAIFDLGKSLAQ 720
Query: 271 FNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLL 330
FNLDDTEVAL+QAVLLMSSDR GL VE+IE+CQE +LLAFEHYINYRKH + HFWPKLL
Sbjct: 721 FNLDDTEVALMQAVLLMSSDRSGLTSVEKIEQCQEAYLLAFEHYINYRKHQIPHFWPKLL 900
Query: 331 MKVTDLRMIGACHASRFLHMK 351
MKVTDLRMIGACHASRFLHMK
Sbjct: 901 MKVTDLRMIGACHASRFLHMK 963
>gb|AF302253.1|AF302253 Scophthalmus maximus thyroid hormone receptor alpha (TR-alpha)
mRNA, partial cds
Length = 920
Score = 486 bits (1250), Expect = e-135
Identities = 239/306 (78%), Positives = 260/306 (84%)
Frame = +1
Query: 34 GCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKR 93
GCKGFFRRTIQKNLHP YSCKYEG C+IDK+TRNQCQ CRFKKCI VGMA DLVL DSKR
Sbjct: 1 GCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLGDSKR 180
Query: 94 LAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKF 153
+A + +T+ +PEP EEW+LIK+VTEAH TNAQGS WKQKRKF
Sbjct: 181 VAKRRLIEENREKRKREEMVRTLQIRPEPNTEEWDLIKLVTEAHRHTNAQGSSWKQKRKF 360
Query: 154 LPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 213
L +DIGQ P+V +G KVDLEAFS+FTKI+TPAITRVVDFAKKLPMF ELPCEDQIILL
Sbjct: 361 LSDDIGQGPMVPTSDGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILL 540
Query: 214 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNL 273
KGCCMEIMSLRAAVRYDPESETLTLNGEMAV R QLKNGGLGVVSDAIFDLG SL+ FNL
Sbjct: 541 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNL 720
Query: 274 DDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKV 333
DDTEVAL+QAVLLMSSDR GL VE+IE+CQE +LLAFEHYINYRKH++ HFWPKLLMKV
Sbjct: 721 DDTEVALMQAVLLMSSDRSGLTSVEKIEQCQEAYLLAFEHYINYRKHNIPHFWPKLLMKV 900
Query: 334 TDLRMI 339
TDLRMI
Sbjct: 901 TDLRMI 918
>gb|AF302247.1|AF302247 Oreochromis niloticus thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 887
Score = 481 bits (1238), Expect = e-134
Identities = 242/295 (82%), Positives = 255/295 (86%), Gaps = 9/295 (3%)
Frame = +1
Query: 50 TYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXX 109
TY+CKYEGKCVIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA
Sbjct: 1 TYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRR 180
Query: 110 XXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFL---------PEDIGQ 160
LQKT + EPT EW+LI++VTEAH+ATNAQG+HWKQKRKFL PEDIGQ
Sbjct: 181 EELQKTAWDRLEPTQXEWDLIRMVTEAHMATNAQGNHWKQKRKFLSAAGVKEAKPEDIGQ 360
Query: 161 APIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 220
A NAPEG KVD+EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI
Sbjct: 361 ASTGNAPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 540
Query: 221 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 280
MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVAL
Sbjct: 541 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVAL 720
Query: 281 LQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTD 335
LQAV+L+SSDRPGL VERIE+CQE FLLAFEHYINYRKH VAHFWPKLLMKVTD
Sbjct: 721 LQAVILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKHKVAHFWPKLLMKVTD 885
>gb|AF302241.1|AF302241 Anguilla anguilla thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 890
Score = 478 bits (1229), Expect = e-133
Identities = 242/296 (81%), Positives = 254/296 (85%), Gaps = 10/296 (3%)
Frame = +1
Query: 50 TYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXX 109
+Y+CKYEGKC IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA
Sbjct: 1 SYACKYEGKCAIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRRLIEENRQRRQR 180
Query: 110 XX-LQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFL---------PEDIG 159
LQ+T KPEPT +EWELI+ VTEAHVATNAQG+HWKQKRKFL EDIG
Sbjct: 181 REELQRTAWRKPEPTPDEWELIRAVTEAHVATNAQGNHWKQKRKFLRAVEVKESKAEDIG 360
Query: 160 QAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME 219
QAP VNAP+G KVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME
Sbjct: 361 QAPFVNAPDGNKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME 540
Query: 220 IMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVA 279
IMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLS FNLDD+EVA
Sbjct: 541 IMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSCFNLDDSEVA 720
Query: 280 LLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTD 335
LLQAV+LMSSDRPGL VERIE+CQE FLLAFEHYINYRKH V +FWPKLLMKVTD
Sbjct: 721 LLQAVILMSSDRPGLTSVERIEQCQEDFLLAFEHYINYRKHKVPYFWPKLLMKVTD 888
>gb|AF302244.1|AF302244 Takifugu rubripes thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 895
Score = 471 bits (1212), Expect = e-131
Identities = 236/298 (79%), Positives = 255/298 (85%), Gaps = 9/298 (3%)
Frame = +1
Query: 41 RTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXX 100
RTIQKNL+PTY+CKYEGKCVIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA
Sbjct: 1 RTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLI 180
Query: 101 XXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFL------ 154
LQ+T+ + EPT EEW+LI++VTEAH+ATNAQG+HWKQKRKFL
Sbjct: 181 EENRERRRREELQRTVWDRIEPTQEEWDLIRMVTEAHMATNAQGNHWKQKRKFLSAEGLK 360
Query: 155 ---PEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQII 211
PED GQA +VN P G KVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQII
Sbjct: 361 ETKPEDNGQASMVNTPNGNKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQII 540
Query: 212 LLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSF 271
LLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLS+F
Sbjct: 541 LLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSAF 720
Query: 272 NLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKL 329
NLDD+EVALLQA++L+SSDR GL VE+IE+ QE FLLAFEHYINYRKH V HFWP L
Sbjct: 721 NLDDSEVALLQAIILLSSDRSGLSNVEQIERYQEEFLLAFEHYINYRKHKVPHFWPNL 894
>gb|AF302242.1|AF302242 Danio rerio thyroid hormone receptor beta (TR-beta) mRNA, partial
cds
Length = 834
Score = 460 bits (1183), Expect = e-127
Identities = 229/277 (82%), Positives = 243/277 (87%), Gaps = 9/277 (3%)
Frame = +1
Query: 53 CKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXL 112
CKYEGKCVIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA L
Sbjct: 1 CKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREEL 180
Query: 113 QKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFL---------PEDIGQAPI 163
QKT+ +PEPT EEWE+I++VTEAH+ATNAQG+HWKQKRKFL PEDIG API
Sbjct: 181 QKTVWDRPEPTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLSAVGVKEAKPEDIGSAPI 360
Query: 164 VNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 223
VNAPEG KVD+EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL
Sbjct: 361 VNAPEGNKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 540
Query: 224 RAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 283
RAAVRYDPES+TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQA
Sbjct: 541 RAAVRYDPESDTLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQA 720
Query: 284 VLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKH 320
V+L+SSDRPGL VERIE+CQE FLLAFEHYINYRKH
Sbjct: 721 VILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKH 831
>gb|AF302248.1|AF302248 Oreochromis niloticus thyroid hormone receptor alpha large isoform
(TR-alpha1) mRNA, partial cds
Length = 869
Score = 449 bits (1154), Expect = e-124
Identities = 219/289 (75%), Positives = 242/289 (82%)
Frame = +1
Query: 41 RTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXX 100
RTIQKNLHPTYSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 101 XXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQ 160
+ K++ +PEPT EWELI++VTEAH TNAQGS WKQKRKFLPE IGQ
Sbjct: 181 EENRERRKKEEMVKSLQSRPEPTGAEWELIRLVTEAHRHTNAQGSQWKQKRKFLPEKIGQ 360
Query: 161 APIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 220
+P+ +G KVDLEAFS+FTKIITPAIT DFAKKLPMF ELPCEDQIILLKGCCMEI
Sbjct: 361 SPVAPTSDGDKVDLEAFSEFTKIITPAITVFFDFAKKLPMFSELPCEDQIILLKGCCMEI 540
Query: 221 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 280
MSLRAA+RYDP+SETLTL+GEMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVAL
Sbjct: 541 MSLRAAMRYDPDSETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVAL 720
Query: 281 LQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKL 329
LQAVLLMSSDR GL C ++IEKCQE +LLAFEHYINYRKH++ HFWPKL
Sbjct: 721 LQAVLLMSSDRSGLTCTDKIEKCQETYLLAFEHYINYRKHNIPHFWPKL 867
>gb|AF322218.1|AF322218 Danio rerio thyroid hormone receptor beta 2-like mRNA, complete
sequence
Length = 1234
Score = 413 bits (1061), Expect = e-113
Identities = 202/215 (93%), Positives = 209/215 (96%)
Frame = +2
Query: 155 PEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 214
PEDIG APIVNAPEG KVD+EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK
Sbjct: 587 PEDIGSAPIVNAPEGNKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 766
Query: 215 GCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLD 274
GCCMEIMSLRAAVRYDPES+TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLD
Sbjct: 767 GCCMEIMSLRAAVRYDPESDTLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLD 946
Query: 275 DTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVT 334
D+EVALLQAV+L+SSDRPGL VERIE+CQE FLLAFEHYINYRKH VAHFWPKLLMKVT
Sbjct: 947 DSEVALLQAVILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKHKVAHFWPKLLMKVT 1126
Query: 335 DLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
DLRMIGACHASRFLHMKVECPTELFPPLFLEVFED
Sbjct: 1127DLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 1231
Score = 181 bits (460), Expect = 7e-44
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = +1
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+PTY+CKYEGKCVID
Sbjct: 337 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVID 516
Query: 63 KVTRNQCQECRFKKCIFVGMATD 85
KVTRNQCQECRFKKCI VGMATD
Sbjct: 517 KVTRNQCQECRFKKCIAVGMATD 585
>gb|AF302240.1|AF302240 Anguilla anguilla thyroid hormone receptor alpha (TR-alpha) mRNA,
partial cds
Length = 809
Score = 408 bits (1048), Expect = e-112
Identities = 204/269 (75%), Positives = 224/269 (82%)
Frame = +1
Query: 41 RTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXX 100
RTIQKNLHP+YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDD+KR+A
Sbjct: 1 RTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDNKRVAKRRLI 180
Query: 101 XXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQ 160
+ KT+ ++PEP EWELI++VTEAH TNAQ SHWKQKRKFLPEDIGQ
Sbjct: 181 EENRERRKKEEMVKTLQNRPEPCSSEWELIRLVTEAHRHTNAQCSHWKQKRKFLPEDIGQ 360
Query: 161 APIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 220
P+ +G KVDLEAF +FTKIITPAIT VVDFAKKLPMF ELPCEDQIILLKGCCMEI
Sbjct: 361 FPVAPNSDGDKVDLEAFREFTKIITPAITGVVDFAKKLPMFSELPCEDQIILLKGCCMEI 540
Query: 221 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 280
MSLRAAVRYDPESETLTL+GEMAV R QLKNGGL VVSDAIFDLG SL+ FNLDD+EVAL
Sbjct: 541 MSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLRVVSDAIFDLGKSLAQFNLDDSEVAL 720
Query: 281 LQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
LQAVLLMSSDR GL CVE+IEKCQE +LL
Sbjct: 721 LQAVLLMSSDRSGLTCVEKIEKCQETYLL 807
>gb|M31177.1|RATERBAA2 Rat c-erbA-alpha-2 protein mRNA, complete cds
Length = 1587
Score = 387 bits (995), Expect = e-106
Identities = 189/256 (73%), Positives = 220/256 (85%)
Frame = +1
Query: 82 MATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATN 141
MA DLVLDDSKR+A + +++ +PEPT EEW+LI + TEAH +TN
Sbjct: 1 MAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTN 180
Query: 142 AQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMF 201
AQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS+FTKIITPAITRVVDFAKKLPMF
Sbjct: 181 AQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMF 360
Query: 202 CELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAI 261
ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEMAV R QLKNGGLGVVSDAI
Sbjct: 361 SELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAI 540
Query: 262 FDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHH 321
F+LG SLS+FNLDDTEVALLQAVLLMS+DR GL+CV++IEK QE +LLAFEHY+N+RKH+
Sbjct: 541 FELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHN 720
Query: 322 VAHFWPKLLMKVTDLR 337
+ HFWPKLLMK +++
Sbjct: 721 IPHFWPKLLMKEREVQ 768
>gb|AF302246.1|AF302246 Oncorhynchus mykiss thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 687
Score = 373 bits (957), Expect = e-101
Identities = 181/229 (79%), Positives = 196/229 (85%), Gaps = 9/229 (3%)
Frame = +1
Query: 32 CEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDS 91
CEGCKGFFRRTIQKNL+PTY+CKYE KC+IDKVTRNQCQECRFKKCI VGMATDLVLDDS
Sbjct: 1 CEGCKGFFRRTIQKNLNPTYACKYEAKCIIDKVTRNQCQECRFKKCITVGMATDLVLDDS 180
Query: 92 KRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKR 151
KRLA QKT+ +PE + EEW+LI++VTEAH++TNAQG+HWKQKR
Sbjct: 181 KRLAKRKLIEESRERRRKEEFQKTVWDRPELSQEEWDLIRMVTEAHMSTNAQGNHWKQKR 360
Query: 152 KFL---------PEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFC 202
KFL PEDIGQAP++NAPEG KVD+EAFSQFTKIITPAITRVVDFAKKLPMFC
Sbjct: 361 KFLSAVGVKETKPEDIGQAPVINAPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFC 540
Query: 203 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKN 251
ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKN
Sbjct: 541 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKN 687
>gb|AF302249.1|AF302249 Oreochromis niloticus thyroid hormone receptor alpha small isoform
(TR-alpha2) mRNA, partial cds
Length = 722
Score = 357 bits (917), Expect = 7e-97
Identities = 184/289 (63%), Positives = 203/289 (69%)
Frame = +1
Query: 41 RTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXX 100
RTIQKNLHPTYSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 101 XXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQ 160
+ K++ +PEPT EWELI++VTEAH TNAQGS WKQKRKFL
Sbjct: 181 EENRERRKKEEMVKSLQSRPEPTGAEWELIRLVTEAHRHTNAQGSQWKQKRKFL------ 342
Query: 161 APIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 220
LPCEDQIILLKGCCMEI
Sbjct: 343 -------------------------------------------LPCEDQIILLKGCCMEI 393
Query: 221 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 280
MSLRAA+RYDP+SETLTL+GEMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVAL
Sbjct: 394 MSLRAAMRYDPDSETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVAL 573
Query: 281 LQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKL 329
LQAVLLMSSDR GL C ++IEKCQE +LLAFEHYINYRKH++ HFWPKL
Sbjct: 574 LQAVLLMSSDRSGLTCTDKIEKCQETYLLAFEHYINYRKHNIPHFWPKL 720
>gb|AF302245.1|AF302245 Oncorhynchus mykiss thyroid hormone receptor alpha (TR-alpha) mRNA,
partial cds
Length = 683
Score = 356 bits (914), Expect = 2e-96
Identities = 175/227 (77%), Positives = 191/227 (84%)
Frame = +1
Query: 41 RTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXX 100
RTIQKNLHP YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 101 XXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQ 160
+ KT+ ++PEPT EWELI+++TEAH TNAQGSHWKQKRKFLPEDIGQ
Sbjct: 181 EENREKRKKEEMVKTLQNRPEPTGSEWELIRMLTEAHRHTNAQGSHWKQKRKFLPEDIGQ 360
Query: 161 APIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 220
+P+ +G KVDLEAFS+FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEI
Sbjct: 361 SPVAPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEI 540
Query: 221 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMS 267
MSLRAAVRYDPESETLTL+GEMAV R QLKNGGLGVVSDAIFDLG S
Sbjct: 541 MSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKS 681
>gb|AF302250.1|AF302250 Salmo salar thyroid hormone receptor alpha (TR-alpha) mRNA, partial
cds
Length = 679
Score = 345 bits (885), Expect = 4e-93
Identities = 173/227 (76%), Positives = 189/227 (83%)
Frame = +1
Query: 41 RTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXX 100
RTIQKNLHP YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 101 XXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQ 160
+ KT+ ++PEPT EWELI+++TEAH TNAQGSHWKQKRKFLPEDIGQ
Sbjct: 181 EENRVKRKEEMV-KTLQNRPEPTGSEWELIRMLTEAHRHTNAQGSHWKQKRKFLPEDIGQ 357
Query: 161 APIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 220
+P+V +G KVDLEAFS+FTKIITPAITRVVDFAKKLPMF LPCEDQIILLKGCCMEI
Sbjct: 358 SPVVPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSGLPCEDQIILLKGCCMEI 537
Query: 221 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMS 267
MSLRAAVRYD ESETLTL+GEMAV R QLKNG LGVVSDAIFDLG S
Sbjct: 538 MSLRAAVRYDAESETLTLSGEMAVKREQLKNGDLGVVSDAIFDLGKS 678
>gb|AY049025.1|AY049025S1 Rana pipiens thyroid hormone receptor beta mRNA, partial cds
Length = 538
Score = 323 bits (827), Expect = 2e-86
Identities = 153/177 (86%), Positives = 157/177 (88%)
Frame = +1
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCV
Sbjct: 7 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCV 186
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQKT+ KP
Sbjct: 187 IDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKDELQKTLVQKP 366
Query: 121 EPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF 177
EPT EEWELI++VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF
Sbjct: 367 EPTPEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF 537
>gb|AF146777.1|AF146777 Salmo salar thyroid hormone receptor beta (TR-beta) mRNA, partial
cds
Length = 837
Score = 320 bits (821), Expect = 1e-85
Identities = 151/199 (75%), Positives = 167/199 (83%), Gaps = 9/199 (4%)
Frame = +1
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVI 61
+GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+PTY+CKYE KC+I
Sbjct: 241 NGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCII 420
Query: 62 DKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
DKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQKT+ +PE
Sbjct: 421 DKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRPE 600
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFL---------PEDIGQAPIVNAPEGGKV 172
P+ EEW+LI++ TEAH++TNAQG+HWKQKRKFL PEDIGQAP++NAPEG KV
Sbjct: 601 PSQEEWDLIRMATEAHMSTNAQGNHWKQKRKFLSAVGVKETKPEDIGQAPVINAPEGSKV 780
Query: 173 DLEAFSQFTKIITPAITRV 191
D+EAFSQFTKIITPAITRV
Sbjct: 781 DIEAFSQFTKIITPAITRV 837
>emb|Y16623.1|NMY16623 Necturus maculosus mRNA for thyroid hormone receptor receptor
alpha, partial
Length = 557
Score = 280 bits (715), Expect = 2e-73
Identities = 136/184 (73%), Positives = 153/184 (82%)
Frame = +1
Query: 60 VIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHK 119
+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ ++
Sbjct: 4 IIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMLKSMQNR 183
Query: 120 PEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQ 179
PEPT EEWELI++VT+AH +TNAQGSHWKQKRKFLP+ IGQ P+ PE +VDLEAFS+
Sbjct: 184 PEPTSEEWELIRLVTDAHCSTNAQGSHWKQKRKFLPDAIGQCPMTAVPENDRVDLEAFSE 363
Query: 180 FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLN 239
FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+
Sbjct: 364 FTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLS 543
Query: 240 GEMA 243
GEMA
Sbjct: 544 GEMA 555
>dbj|AB057767.1|AB057767 Ciona savignyi Cs-NR1 mRNA for nuclear receptor 1, complete cds
Length = 2128
Score = 280 bits (715), Expect = 2e-73
Identities = 150/360 (41%), Positives = 207/360 (56%), Gaps = 2/360 (0%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
M GY+PSYLD +E+CVVCGDKATGYHYRCITCEGCKGFFRRT+QK LH Y CK + KC
Sbjct: 143 MKGYVPSYLDGNEVCVVCGDKATGYHYRCITCEGCKGFFRRTVQKGLHQAYQCKQDEKCQ 322
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP 120
I+KV+RNQCQ CR+KKCI GMATDLVL++ KRLA K +GH
Sbjct: 323 INKVSRNQCQLCRYKKCITTGMATDLVLNEDKRLAKRRLIERNRQLRR----HKDLGH-- 484
Query: 121 EPTDEEWELIKI-VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQ 179
E W+ K+ E HV + +H+ D+G +
Sbjct: 485 --VIETWKSNKLSEEEKHVINSVVQAHY---------DLGSYCDITGVSTSTASHN--EH 625
Query: 180 FTKIITPAITRVVDFAKKLPMFC-ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 238
F+ +T A+TRVV+FAK LP F ++ +DQ+ +LKGCCME++ L A YD + TL L
Sbjct: 626 FSSALTNAVTRVVEFAKCLPFFSDQVSTDDQVTMLKGCCMEVIVLNAVTDYDRQRGTLKL 805
Query: 239 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVE 298
+ V+R QL+ +D +F ++ L TE+++++A+++ + DRPG+
Sbjct: 806 FSSVVVSRNQLRRTRFDNFADDLFRTAEEMAILQLTQTEISMMKAIIVFAPDRPGVQQTG 985
Query: 299 RIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 358
RI+ Q L A HY+N ++ H W LL+K+ D+R I A+ +HMK+ P EL
Sbjct: 986 RIKNIQNFLLQALNHYLNDKRKHEYTVWSMLLLKLADVRRISTGFAASLMHMKLNNPEEL 1165
>gb|AF077403.1|AF077403 Ciona intestinalis nuclear receptor 1 (NR1) mRNA, complete cds
Length = 2086
Score = 265 bits (678), Expect = 4e-69
Identities = 142/361 (39%), Positives = 204/361 (56%), Gaps = 3/361 (0%)
Frame = +2
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCV 60
M GYIPSYLD +E CVVCGDKATGYHYRCITCEGCKGFFRRT+QK+L TY CK GKC
Sbjct: 185 MKGYIPSYLDGNEECVVCGDKATGYHYRCITCEGCKGFFRRTVQKDLQKTYQCKQRGKCQ 364
Query: 61 IDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIG--H 118
++KV+RNQCQ CR++KCI GMATDLVL++ KR+A + +G
Sbjct: 365 VNKVSRNQCQMCRYEKCIATGMATDLVLNEDKRIAKRKLIERNRQLRRHKDISHVMGTWK 544
Query: 119 KPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 178
+D++ +I V +AH + R +P G+
Sbjct: 545 VGRGSDDDNHVISAVVQAHNDVINDDDFEETSR--------------SPTHGE------- 661
Query: 179 QFTKIITPAITRVVDFAKKLPMFC-ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLT 237
QF+ +T A+TRVV+FAK+LP F + +DQ+ +LKGCCME++ L YD TL
Sbjct: 662 QFSSALTNAVTRVVEFAKRLPFFTGKASTDDQVAMLKGCCMEVIVLNCVASYDRARCTLK 841
Query: 238 LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCV 297
L ++ +TR +L+ +D +F +S L +TE+A+L+A+++ ++DRP + +
Sbjct: 842 LFSKVIITREKLRRTRFDHFADDLFRTAEEMSILQLTETEIAMLKAIIVFAADRPRIQHI 1021
Query: 298 ERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTE 357
+ I Q L + +Y+ + H W LL+K+ D+R I A+ + MK+ P E
Sbjct: 1022DEIRNIQNSLLQSLRYYVMDKAQHEYAVWSMLLIKMADIRRISNGFAASLMDMKLNNPEE 1201
Query: 358 L 358
L
Sbjct: 1202L 1204
>gb|S74155.1|S74155 zRAR alpha =retinoic acid receptor alpha [zebrafish, embryos, mRNA,
1773 nt]
Length = 1773
Score = 231 bits (589), Expect = 8e-59
Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 6/361 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 432 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 605
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTD------EEWE 128
+KC+ VGM+ + V +D + +K KPE T+ + +
Sbjct: 606 QKCLEVGMSKESVRNDRNK-------------------KKKEEKKPECTENYTLSPDTEQ 728
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 729 MIDRVRKAHQETFPSLC---QLGKYTTSNSSERRVA-------LDVDLWDKFSELSTKCI 878
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 879 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1058
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE L
Sbjct: 1059MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLL 1238
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1239EALKIYVRNRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1415
Query: 369 D 369
+
Sbjct: 1416N 1418
>emb|AJ012379.2|FRU012379 Fugu rubripes mRNA for retinoic acid receptor alpha-2
Length = 2577
Score = 231 bits (588), Expect = 1e-58
Identities = 133/364 (36%), Positives = 197/364 (53%), Gaps = 9/364 (2%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 1468 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 1641
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTD------EEWE 128
+KC+ VGM+ + V +D + +K KPE + + +
Sbjct: 1642 QKCLEVGMSKESVRNDRNK-------------------KKKDEKKPECIENYVLSPDTEQ 1764
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPE--DIGQAPIVNAPEGG-KVDLEAFSQFTKIIT 185
+I V +AH T P +G+ N+ E +D++ + +F+++ T
Sbjct: 1765 MINRVRKAHQET-------------FPSLCQLGKYTTTNSSERRVALDVDLWDKFSELST 1905
Query: 186 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVT 245
I + V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + +
Sbjct: 1906 KCIIKTVEFAKQLPGFVTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 2085
Query: 246 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQE 305
R Q+ N G G ++D +F L +DD E LL A+ L+ DR L E+++ QE
Sbjct: 2086 RTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQAEKVDILQE 2265
Query: 306 GFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLE 365
L A + Y+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E
Sbjct: 2266 PLLEALKIYVRRRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQE 2442
Query: 366 VFED 369
+ E+
Sbjct: 2443 MLEN 2454
>emb|AJ012378.1|FRU012378 Fugu rubripes mRNA for retinoic acid receptor alpha-1
Length = 2134
Score = 231 bits (588), Expect = 1e-58
Identities = 133/364 (36%), Positives = 197/364 (53%), Gaps = 9/364 (2%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 1025 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 1198
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTD------EEWE 128
+KC+ VGM+ + V +D + +K KPE + + +
Sbjct: 1199 QKCLEVGMSKESVRNDRNK-------------------KKKDEKKPECIENYVLSPDTEQ 1321
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPE--DIGQAPIVNAPEGG-KVDLEAFSQFTKIIT 185
+I V +AH T P +G+ N+ E +D++ + +F+++ T
Sbjct: 1322 MINRVRKAHQET-------------FPSLCQLGKYTTTNSSERRVALDVDLWDKFSELST 1462
Query: 186 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVT 245
I + V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + +
Sbjct: 1463 KCIIKTVEFAKQLPGFVTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 1642
Query: 246 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQE 305
R Q+ N G G ++D +F L +DD E LL A+ L+ DR L E+++ QE
Sbjct: 1643 RTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQAEKVDILQE 1822
Query: 306 GFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLE 365
L A + Y+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E
Sbjct: 1823 PLLEALKIYVRRRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQE 1999
Query: 366 VFED 369
+ E+
Sbjct: 2000 MLEN 2011
>emb|X59473.1|GGRARBETA G.gallus mRNA for retinoic acid receptor-beta, RAR-beta
Length = 1596
Score = 230 bits (587), Expect = 1e-58
Identities = 132/356 (37%), Positives = 193/356 (54%), Gaps = 1/356 (0%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 249 CFVCQDKSSGYHYGVTACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 422
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEE-WELIKIV 133
+KC VGM+ + V +D + K EPT +E E ++
Sbjct: 423 QKCFEVGMSKESVRNDRNK------------------------KKKEPTKQESTENYEMT 530
Query: 134 TEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVD 193
E T ++ L + +A ++DL + +F+++ T I ++V+
Sbjct: 531 AELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVE 710
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 711 FAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 890
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A +
Sbjct: 891 FGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKI 1070
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
YI R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1071YIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1235
>emb|X57340.1|GDRARB Chicken RAR-beta mRNA for retinoic acid receptor beta
Length = 1695
Score = 230 bits (586), Expect = 2e-58
Identities = 132/356 (37%), Positives = 193/356 (54%), Gaps = 1/356 (0%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 361 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 534
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEE-WELIKIV 133
+KC VGM+ + V +D + K EPT +E E ++
Sbjct: 535 QKCFEVGMSKESVRNDRNK------------------------KKKEPTKQESTENYEMT 642
Query: 134 TEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVD 193
E T ++ L + +A ++DL + +F+++ T I ++V+
Sbjct: 643 AELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVE 822
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 823 FAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1002
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A +
Sbjct: 1003FGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKI 1182
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
YI R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1183YIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1347
>gb|AF110730.1|AF110730 Coturnix coturnix retinoic acid receptor beta-2 (RAR-beta-2) mRNA,
complete cds
Length = 1642
Score = 230 bits (586), Expect = 2e-58
Identities = 132/356 (37%), Positives = 193/356 (54%), Gaps = 1/356 (0%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 267 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 440
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEE-WELIKIV 133
+KC VGM+ + V +D + K EPT +E E ++
Sbjct: 441 QKCFEVGMSKESVRNDRNK------------------------KKKEPTKQESTENYEMT 548
Query: 134 TEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVD 193
E T ++ L + +A ++DL + +F+++ T I ++V+
Sbjct: 549 AELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVE 728
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 729 FAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 908
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A +
Sbjct: 909 FGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKI 1088
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
YI R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1089YIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1253
>emb|X56674.1|GGRTABPB Chicken mRNA for retinoic acid binding protein beta isoform
Length = 1869
Score = 230 bits (586), Expect = 2e-58
Identities = 132/356 (37%), Positives = 193/356 (54%), Gaps = 1/356 (0%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 557 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 730
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEE-WELIKIV 133
+KC VGM+ + V +D + K EPT +E E ++
Sbjct: 731 QKCFEVGMSKESVRNDRNK------------------------KKKEPTKQESTENYEMT 838
Query: 134 TEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVD 193
E T ++ L + +A ++DL + +F+++ T I ++V+
Sbjct: 839 AELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVE 1018
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1019FAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1198
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A +
Sbjct: 1199FGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKI 1378
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
YI R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1379YIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1543
>emb|X57339.1|GDRARB1 G.domesticus RAR beta mRNA for retinoic acid receptor beta, isoform
4
Length = 1714
Score = 230 bits (586), Expect = 2e-58
Identities = 132/356 (37%), Positives = 193/356 (54%), Gaps = 1/356 (0%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 380 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 553
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEE-WELIKIV 133
+KC VGM+ + V +D + K EPT +E E ++
Sbjct: 554 QKCFEVGMSKESVRNDRNK------------------------KKKEPTKQESTENYEMT 661
Query: 134 TEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVD 193
E T ++ L + +A ++DL + +F+++ T I ++V+
Sbjct: 662 AELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVE 841
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 842 FAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1021
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A +
Sbjct: 1022FGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKI 1201
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
YI R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1202YIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1366
>emb|X57341.1|GDRARB2 G.domesticus RAR beta mRNA for retinoic acid receptor beta, isoform 1
Length = 2039
Score = 230 bits (586), Expect = 2e-58
Identities = 132/356 (37%), Positives = 193/356 (54%), Gaps = 1/356 (0%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 705 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 878
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEE-WELIKIV 133
+KC VGM+ + V +D + K EPT +E E ++
Sbjct: 879 QKCFEVGMSKESVRNDRNK------------------------KKKEPTKQESTENYEMT 986
Query: 134 TEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVD 193
E T ++ L + +A ++DL + +F+++ T I ++V+
Sbjct: 987 AELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVE 1166
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1167 FAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1346
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A +
Sbjct: 1347 FGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKI 1526
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
YI R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1527 YIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1691
>gb|AF110729.1|AF110729 Coturnix coturnix retinoic acid receptor beta-1 (RAR-beta-1) mRNA,
complete cds
Length = 2049
Score = 230 bits (586), Expect = 2e-58
Identities = 132/356 (37%), Positives = 193/356 (54%), Gaps = 1/356 (0%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 674 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 847
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEE-WELIKIV 133
+KC VGM+ + V +D + K EPT +E E ++
Sbjct: 848 QKCFEVGMSKESVRNDRNK------------------------KKKEPTKQESTENYEMT 955
Query: 134 TEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVD 193
E T ++ L + +A ++DL + +F+++ T I ++V+
Sbjct: 956 AELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVE 1135
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1136 FAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1315
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A +
Sbjct: 1316 FGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKI 1495
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
YI R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1496 YIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1660
>gb|AY046944.1| Mesocricetus auratus retinoic acid receptor beta-2 mRNA, complete cds
Length = 2742
Score = 229 bits (584), Expect = 3e-58
Identities = 131/356 (36%), Positives = 192/356 (53%), Gaps = 1/356 (0%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 712 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 885
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-ELIKIV 133
+KC VGM+ + V +D + K EP+ +E E ++
Sbjct: 886 QKCFEVGMSKESVRNDRNK------------------------KKKEPSKQECTESYEMT 993
Query: 134 TEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVD 193
E T ++ L + +A ++DL + +F+++ T I ++V+
Sbjct: 994 AELDDLTEKIRKAHQETFPSLCQLAKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVE 1173
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1174 FAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1353
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A +
Sbjct: 1354 FGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKI 1533
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
YI R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1534 YIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1698
>emb|X07282.1|HSRARE Human mRNA for retinoic acid receptor-epsilon protein
Length = 1758
Score = 229 bits (584), Expect = 3e-58
Identities = 132/355 (37%), Positives = 193/355 (54%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 584 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 757
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 758 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 898
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 899 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1048
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1049AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1228
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A + Y
Sbjct: 1229GPLTDLVFTFANQLQPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1408
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1409IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1570
>emb|Y00291.1|HSHAPRA Human hap mRNA encoding a DNA-binding hormone receptor
Length = 2972
Score = 229 bits (583), Expect = 4e-58
Identities = 132/355 (37%), Positives = 193/355 (54%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 562 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 735
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 736 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 876
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 877 KAHQETFPSLC---QLAKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1026
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1027AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1206
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A + Y
Sbjct: 1207GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1386
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1387IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMMEN 1548
>gb|S63196.1|S63196 retinoic acid receptor-beta [chickens, mRNA Partial, 1530 nt]
Length = 1530
Score = 229 bits (583), Expect = 4e-58
Identities = 132/355 (37%), Positives = 192/355 (53%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 172 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 345
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + E T E +L + +
Sbjct: 346 QKCFEVGMSKESVRNDRNKKKKEPTKQDSTENY-------------EMTAELDDLTEKIR 486
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 487 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 636
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 637 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 816
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A + Y
Sbjct: 817 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIY 996
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
I R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 997 IRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1158
>gb|AF342944.1|AF342944 Danio rerio retinoic acid receptor alpha 2 mRNA, complete cds
Length = 2539
Score = 229 bits (583), Expect = 4e-58
Identities = 130/355 (36%), Positives = 197/355 (54%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRRTIQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 434 CFVCQDKSSGYHYGVSACEGCKGFFRRTIQKNM--VYTCHREKSCIINKVTRNRCQYCRL 607
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC+ VGM+ + V +D + Q+ + + D E ++I+ V
Sbjct: 608 QKCLEVGMSKESVRNDRNKRKKDDKK------------QECLENYVLSPDTE-KMIEQVR 748
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ + +A +D++ + +F+++ T I + V+F
Sbjct: 749 KAHQETFPSLC---QLGKYTTNN-------SADHRVALDVDLWDKFSELSTKCIIKTVEF 898
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 899 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGF 1078
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DD E LL A+ L+ DR L +++++ QE L A + Y
Sbjct: 1079GPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQSDKVDELQEPLLEALKIY 1258
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1259VRNRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1420
>gb|L03399.1|ZEFRARA2B Zebrafish retinoic acid receptor alpha 2.B (RAR-alpha-2.B) mRNA,
complete cds
Length = 2539
Score = 229 bits (583), Expect = 4e-58
Identities = 130/355 (36%), Positives = 197/355 (54%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRRTIQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 434 CFVCQDKSSGYHYGVSACEGCKGFFRRTIQKNM--VYTCHREKSCIINKVTRNRCQYCRL 607
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC+ VGM+ + V +D + Q+ + + D E ++I+ V
Sbjct: 608 QKCLEVGMSKESVRNDRNKRKKDDKK------------QECLENYVLSPDTE-KMIEQVR 748
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ + +A +D++ + +F+++ T I + V+F
Sbjct: 749 KAHQETFPSLC---QLGKYTTNN-------SADHRVALDVDLWDKFSELSTKCIIKTVEF 898
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 899 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGF 1078
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DD E LL A+ L+ DR L +++++ QE L A + Y
Sbjct: 1079GPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQSDKVDELQEPLLEALKIY 1258
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1259VRNRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1420
>gb|AF342936.1|AF342936 Danio rerio retinoic acid receptor alpha 1 mRNA, complete cds
Length = 1967
Score = 229 bits (583), Expect = 4e-58
Identities = 130/361 (36%), Positives = 196/361 (54%), Gaps = 6/361 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 343 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 516
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTD------EEWE 128
+KC+ VGM+ + V +D + +K KPE T+ + +
Sbjct: 517 QKCLEVGMSKESVRNDRNK-------------------KKKEEKKPECTENYTLSPDTEQ 639
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 640 MIDRVRKAHQETFPSLC---QLGKYTTSNSSERRVA-------LDVDLWDKFSELSTKCI 789
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 790 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 969
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE L
Sbjct: 970 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLL 1149
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H H +PK+LMK+TDLR I A A + +K+E P + PPL E+ E
Sbjct: 1150EALKIYVRNRRPHKPHMFPKMLMKITDLRSISAKGAELLITLKMEIPGSM-PPLIQEMLE 1326
Query: 369 D 369
+
Sbjct: 1327N 1329
>gb|L03398.1|ZEFRARA2A Zebrafish retinoic acid receptor alpha 2.A (RAR-alpha-2.A) mRNA,
complete cds
Length = 1967
Score = 229 bits (583), Expect = 4e-58
Identities = 130/361 (36%), Positives = 196/361 (54%), Gaps = 6/361 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 343 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 516
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTD------EEWE 128
+KC+ VGM+ + V +D + +K KPE T+ + +
Sbjct: 517 QKCLEVGMSKESVRNDRNK-------------------KKKEEKKPECTENYTLSPDTEQ 639
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 640 MIDRVRKAHQETFPSLC---QLGKYTTSNSSERRVA-------LDVDLWDKFSELSTKCI 789
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 790 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 969
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE L
Sbjct: 970 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLL 1149
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H H +PK+LMK+TDLR I A A + +K+E P + PPL E+ E
Sbjct: 1150EALKIYVRNRRPHKPHMFPKMLMKITDLRSISAKGAELLITLKMEIPGSM-PPLIQEMLE 1326
Query: 369 D 369
+
Sbjct: 1327N 1329
>gb|AF157483.1|AF157483 Homo sapiens retinoic acid receptor beta 4 (NR1B2) mRNA, complete
cds
Length = 1462
Score = 228 bits (582), Expect = 5e-58
Identities = 132/355 (37%), Positives = 193/355 (54%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 352 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 525
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 526 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 666
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 667 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 816
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 817 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 996
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A + Y
Sbjct: 997 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1176
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1177IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1338
>ref|NM_000965.2| Homo sapiens retinoic acid receptor, beta (RARB), transcript variant
1, mRNA
Length = 3119
Score = 228 bits (582), Expect = 5e-58
Identities = 132/355 (37%), Positives = 193/355 (54%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 709 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 882
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 883 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 1023
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 1024 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1173
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1174 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1353
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A + Y
Sbjct: 1354 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1533
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1534 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1695
>ref|NM_016152.2| Homo sapiens retinoic acid receptor, beta (RARB), transcript
variant 2, mRNA
Length = 2762
Score = 228 bits (582), Expect = 5e-58
Identities = 132/355 (37%), Positives = 193/355 (54%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 352 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 525
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 526 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 666
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 667 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 816
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 817 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 996
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A + Y
Sbjct: 997 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1176
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1177IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1338
>ref|XM_053323.1| Homo sapiens retinoic acid receptor, beta (RARB), mRNA
Length = 3129
Score = 228 bits (582), Expect = 5e-58
Identities = 132/355 (37%), Positives = 193/355 (54%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 710 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 883
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 884 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 1024
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 1025 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1174
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1175 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1354
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L +++K QE L A + Y
Sbjct: 1355 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1534
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1535 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1696
>gb|S56660.1|S56660 retinoic acid nuclear receptor isoform beta 2 [mice, embryonal
carcinoma cell line, PCC7-MZ1, mRNA, 2971 nt]
Length = 2971
Score = 228 bits (581), Expect = 7e-58
Identities = 134/362 (37%), Positives = 196/362 (54%), Gaps = 7/362 (1%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 599 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 772
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + K EP+ +E T
Sbjct: 773 QKCFEVGMSKESVRNDRNK------------------------KKKEPSKQE------CT 862
Query: 135 EAHVATNAQGSHWKQKRKFLPE------DIGQAPI-VNAPEGGKVDLEAFSQFTKIITPA 187
E++ T ++ RK E +G+ +A ++DL + +F+++ T
Sbjct: 863 ESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKC 1042
Query: 188 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRG 247
I ++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R
Sbjct: 1043IIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRT 1222
Query: 248 QLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
Q+ N G G ++D +F L +DDTE LL A+ L+ DR L +++K QE
Sbjct: 1223QMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPL 1402
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
L A + YI R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+
Sbjct: 1403LEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEML 1579
Query: 368 ED 369
E+
Sbjct: 1580EN 1585
>emb|X78335.1|GGRARA21 G.gallus retinoic acid receptor alpha isoform 2-1 mRNA
Length = 1494
Score = 228 bits (581), Expect = 7e-58
Identities = 129/355 (36%), Positives = 192/355 (53%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 250 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 423
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + T E ELI+ V
Sbjct: 424 QKCFEVGMSKESVRNDRNKKKKDVPKTECSESYIV-------------TPEVEELIEKVR 564
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ + + + +D++ + +F+++ T I + V+F
Sbjct: 565 KAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEF 714
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 715 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 894
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DD E LL A+ L+ DR L ++++K QE L A + Y
Sbjct: 895 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIY 1074
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
+ R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1075VRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1236
>emb|X73972.1|GGRARA1 G.gallus RAR-alpha1 mRNA for retinoic acid receptor
Length = 1552
Score = 228 bits (581), Expect = 7e-58
Identities = 129/355 (36%), Positives = 192/355 (53%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 319 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 492
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + T E ELI+ V
Sbjct: 493 QKCFEVGMSKESVRNDRNKKKKDVPKTECSESYIV-------------TPEVEELIEKVR 633
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ + + + +D++ + +F+++ T I + V+F
Sbjct: 634 KAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEF 783
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 784 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 963
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DD E LL A+ L+ DR L ++++K QE L A + Y
Sbjct: 964 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIY 1143
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
+ R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1144VRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1305
>gb|AF242867.1|AF242867 Synthetic construct ECFP-retinoic acid receptor alpha fusion protein
mRNA, complete cds
Length = 2085
Score = 228 bits (580), Expect = 9e-58
Identities = 133/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 958 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 1131
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 1132 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 1254
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 1255 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1404
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 1405 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1584
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ QE L
Sbjct: 1585 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1764
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1765 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1941
Query: 369 D 369
+
Sbjct: 1942 N 1944
>gb|AY046943.1| Mesocricetus auratus retinoic acid receptor alpha mRNA, complete
cds
Length = 2748
Score = 228 bits (580), Expect = 9e-58
Identities = 132/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 348 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 521
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 522 QKCFEVGMSKESVRNDRNK-------------------KKKEAAKPECSESYTLTPEVGE 644
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 645 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 794
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 795 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 974
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE L
Sbjct: 975 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1154
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1155EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1331
Query: 369 D 369
+
Sbjct: 1332N 1334
>gb|U41743.1|HSU41743 Human nucleophosmin-retinoic acid receptor alpha fusion protein
NPM-RAR short form mRNA, complete cds
Length = 1944
Score = 228 bits (580), Expect = 9e-58
Identities = 133/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 519 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 692
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 693 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 815
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 816 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 965
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 966 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1145
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ QE L
Sbjct: 1146MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1325
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1326EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1502
Query: 369 D 369
+
Sbjct: 1503N 1505
>gb|U41742.1|HSU41742 Human nucleophosmin-retinoic acid receptor alpha fusion protein
NPM-RAR long form mRNA, complete cds
Length = 2073
Score = 228 bits (580), Expect = 9e-58
Identities = 133/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 648 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 821
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 822 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 944
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 945 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1094
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 1095IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1274
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ QE L
Sbjct: 1275MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1454
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1455EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1631
Query: 369 D 369
+
Sbjct: 1632N 1634
>gb|S50916.1|S50916 PML-RAR fusion gene {fusion transcript} [human, mRNA Partial, 1284
nt]
Length = 1284
Score = 228 bits (580), Expect = 9e-58
Identities = 133/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 124 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 297
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 298 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 420
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 421 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 570
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 571 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 750
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ QE L
Sbjct: 751 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 930
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 931 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1107
Query: 369 D 369
+
Sbjct: 1108N 1110
>gb|S56656.1|S56656 retinoic acid nuclear receptor isoform alpha 1 [mice, embryonal
carcinoma cell line, PCC7-MZ1, mRNA, 2061 nt]
Length = 2061
Score = 228 bits (580), Expect = 9e-58
Identities = 132/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 799 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 972
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 973 QKCFDVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEVGE 1095
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 1096 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1245
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 1246 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1425
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE L
Sbjct: 1426 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1605
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1606 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1782
Query: 369 D 369
+
Sbjct: 1783 N 1785
>emb|Y10094.1|MSRARA M.spretus mRNA for retinoic acid receptor-alpha
Length = 1474
Score = 228 bits (580), Expect = 9e-58
Identities = 132/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 269 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 442
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 443 QKCFEVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEVGE 565
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 566 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 715
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 716 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 895
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE L
Sbjct: 896 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1075
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1076EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1252
Query: 369 D 369
+
Sbjct: 1253N 1255
>gb|BC008727.1|BC008727 Homo sapiens, retinoic acid receptor, alpha, clone MGC:1651
IMAGE:3163891, mRNA, complete cds
Length = 2441
Score = 228 bits (580), Expect = 9e-58
Identities = 133/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 726 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 899
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 900 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 1022
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 1023 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1172
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 1173 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1352
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ QE L
Sbjct: 1353 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1532
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1533 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1709
Query: 369 D 369
+
Sbjct: 1710 N 1712
>ref|NM_000964.1| Homo sapiens retinoic acid receptor, alpha (RARA), mRNA
Length = 2907
Score = 228 bits (580), Expect = 9e-58
Identities = 133/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 364 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 537
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 538 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 660
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 661 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 810
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 811 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 990
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ QE L
Sbjct: 991 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1170
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1171EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1347
Query: 369 D 369
+
Sbjct: 1348N 1350
>emb|X06614.1|HSRRA Human mRNA for receptor of retinoic acid
Length = 2907
Score = 228 bits (580), Expect = 9e-58
Identities = 133/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 364 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 537
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 538 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 660
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 661 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 810
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 811 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 990
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ QE L
Sbjct: 991 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1170
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1171EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1347
Query: 369 D 369
+
Sbjct: 1348N 1350
>gb|M73779.1|HUMPMLRAR Human PML-RAR protein (PML-RAR) mRNA, complete cds
Length = 3036
Score = 228 bits (580), Expect = 9e-58
Identities = 133/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 1333 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 1506
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 1507 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 1629
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 1630 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1779
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 1780 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1959
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ QE L
Sbjct: 1960 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 2139
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 2140 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 2316
Query: 369 D 369
+
Sbjct: 2317 N 2319
>emb|X06538.1|HSRAR Human mRNA for retinoic acid receptor
Length = 1920
Score = 228 bits (580), Expect = 9e-58
Identities = 133/361 (36%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 488 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 661
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 662 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 784
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 785 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 934
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 935 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1114
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ QE L
Sbjct: 1115MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1294
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1295EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1471
Query: 369 D 369
+
Sbjct: 1472N 1474
>gb|S82173.1|S82173 RAR-gamma 2.1=retinoic acid receptor gamma isoform 2.1
{alternatively spliced} [Xenopus laevis, embryos, stage
24, mRNA, 2188 nt]
Length = 2188
Score = 227 bits (578), Expect = 1e-57
Identities = 131/355 (36%), Positives = 194/355 (53%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 384 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRL 557
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + + + E E ELI+ V+
Sbjct: 558 QKCFQVGMSKEAVRNDRNKKKKEIKE------------EVVLPDSYEMPPEMEELIQKVS 701
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A + ++DL + +F+++ T I ++V+F
Sbjct: 702 KAHQETFPSLC---QLGKYTTNS-------SADQRVRLDLGLWDKFSELSTKCIIKIVEF 851
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 852 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1031
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E++EK QE L A + Y
Sbjct: 1032GPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVEKLQEPLLEALKFY 1211
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1212ARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKLEIPGPM-PPLIREMLEN 1373
>gb|S82175.1|S82175 RAR-gamma 2.2=retinoic acid receptor gamma isoform 2.2
{alternatively spliced} [Xenopus laevis, embryos, stage
24, mRNA, 2154 nt]
Length = 2154
Score = 227 bits (578), Expect = 1e-57
Identities = 131/355 (36%), Positives = 194/355 (53%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 350 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRL 523
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + + + E E ELI+ V+
Sbjct: 524 QKCFQVGMSKEAVRNDRNKKKKEIKE------------EVVLPDSYEMPPEMEELIQKVS 667
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A + ++DL + +F+++ T I ++V+F
Sbjct: 668 KAHQETFPSLC---QLGKYTTNS-------SADQRVRLDLGLWDKFSELSTKCIIKIVEF 817
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 818 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 997
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E++EK QE L A + Y
Sbjct: 998 GPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVEKLQEPLLEALKFY 1177
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1178ARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKLEIPGPM-PPLIREMLEN 1339
>gb|L11444.1|XELSRARG1A Xenopus laevis mRNA sequence
Length = 2416
Score = 226 bits (577), Expect = 2e-57
Identities = 131/355 (36%), Positives = 194/355 (53%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 605 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRL 778
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + + + E E ELI+ V+
Sbjct: 779 QKCFQVGMSKEAVRNDRNKKKKEIKE------------EVVLPDSYEMPPEMEELIQKVS 922
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A + ++DL + +F+++ T I ++V+F
Sbjct: 923 KAHQETFPSLC---QLGKYTTNS-------SADQRVQLDLGLWDKFSELSTKCIIKIVEF 1072
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1073AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1252
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E++EK QE L A + Y
Sbjct: 1253GPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVEKLQEPLLEALKFY 1432
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1433ARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKLEIPGPM-PPLIREMLEN 1594
>dbj|D86615.1|D86615 Polyandrocarpa misakiensis mRNA for retinoic acid receptor
homologue, partial cds
Length = 2245
Score = 226 bits (577), Expect = 2e-57
Identities = 127/366 (34%), Positives = 196/366 (52%), Gaps = 11/366 (3%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VCGDK++GYHY +CEGCKGFFRR++QKN+ Y+C CVI+K TR++CQ CR
Sbjct: 208 CFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQ--YTCHRNKNCVINKSTRSRCQYCRL 381
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM + V +D + ++ + T E ++ +V
Sbjct: 382 QKCFQVGMLKESVRNDRNKKRGKEKDGKTGDTSPSGQPEEIV-----VTPEIENIVSVVA 546
Query: 135 EAHVAT-----------NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKI 183
+AH+ T A+G K P D +P VD++ +S+F+ +
Sbjct: 547 KAHLDTFPKNEDLNKYNTAEGQGDKPLSPPTPSDASGSP-------PPVDVKLWSKFSDL 705
Query: 184 ITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMA 243
T +I ++V+FAK +P F +L DQI LLK C+EI+ R RYD ++T++ + +
Sbjct: 706 STKSIIKIVEFAKSVPGFTDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLT 885
Query: 244 VTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKC 303
+ R QL+N G +++ +F SL+ F+LD TE LL A+ LM +DR L E++EK
Sbjct: 886 LNRDQLRNCAFGPMTEQVFGFAKSLTPFDLDHTEGGLLCAICLMCADRTELEDPEKVEKL 1065
Query: 304 QEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLF 363
QE + + + ++ + H +PK+LMK+ DLR IG R + ++ E P E PPL
Sbjct: 1066QEPLVEGLKWFARKKRPNKPHVFPKMLMKIADLRCIGFKGGDRAMSIRKEMPKESMPPLM 1245
Query: 364 LEVFED 369
E+ D
Sbjct: 1246REMLVD 1263
>emb|X87365.1|XLRNARARA X.laevis mRNA for retinoic acid receptor alpha
Length = 2837
Score = 226 bits (575), Expect = 3e-57
Identities = 131/356 (36%), Positives = 193/356 (53%), Gaps = 1/356 (0%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 799 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 972
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + + ++ PE D LI+ V
Sbjct: 973 QKCFEVGMSKESVRNDRNK---------KKKEPPKVDVMESYVLSPETQD----LIEKVR 1113
Query: 135 EAHVAT-NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVD 193
+AH T A K F E E +D++ + +F+++ T I + V+
Sbjct: 1114 KAHKETFPALCQLGKYTTNFSSE-----------ERVSLDIDLWDKFSELSTKCIIKTVE 1260
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1261 FAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAG 1440
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DD E LL A+ L+ DR L ++++K QE L A +
Sbjct: 1441 FGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKI 1620
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1621 YVRNRRPKKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1785
>emb|Z14254.1|NVRARA2M N.viridescens mRNA for retinoic acid receptor alpha 2
Length = 1697
Score = 226 bits (575), Expect = 3e-57
Identities = 130/361 (36%), Positives = 198/361 (54%), Gaps = 6/361 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 579 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKTCIINKVTRNRCQYCRL 752
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTD------EEWE 128
+KC VGM+ + V +D + +K K E T+ E +
Sbjct: 753 QKCFEVGMSKESVRNDRNKK------------------KKQEAPKQECTESYIITPEVED 878
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
L++ V +AH T Q K+ + ++ E +D++ + +F+++ T I
Sbjct: 879 LVEKVRKAHQETFPALC---QLGKYTTNN-------SSEERVSLDIDLWDKFSELSTKCI 1028
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 1029IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQ 1208
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++K QE L
Sbjct: 1209MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLL 1388
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1389EALKIYVRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1565
Query: 369 D 369
+
Sbjct: 1566N 1568
>emb|X17585.1|NVRARAG Newt mRNA for retinoic acid receptor alpha (RAR-alpha)
Length = 1377
Score = 226 bits (575), Expect = 3e-57
Identities = 130/361 (36%), Positives = 198/361 (54%), Gaps = 6/361 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 259 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKTCIINKVTRNRCQYCRL 432
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTD------EEWE 128
+KC VGM+ + V +D + +K K E T+ E +
Sbjct: 433 QKCFEVGMSKESVRNDRNKK------------------KKQEAPKQECTESYIITPEVED 558
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
L++ V +AH T Q K+ + ++ E +D++ + +F+++ T I
Sbjct: 559 LVEKVRKAHQETFPALC---QLGKYTTNN-------SSEERVSLDIDLWDKFSELSTKCI 708
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 709 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQ 888
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++K QE L
Sbjct: 889 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLL 1068
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
A + Y+ R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1069EALKIYVRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1245
Query: 369 D 369
+
Sbjct: 1246N 1248
>ref|NM_031528.1| Rattus norvegicus Retinoic acid receptor, alpha (Rara), mRNA
Length = 2130
Score = 225 bits (573), Expect = 6e-57
Identities = 130/362 (35%), Positives = 195/362 (52%), Gaps = 7/362 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 493 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 666
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + +K KPE +
Sbjct: 667 QKCFEVGMSKESVRNDRNK-------------------KKKETPKPE-----------CS 756
Query: 135 EAHVATNAQGSHWKQKRKFLPE------DIGQAPIVNAPEGG-KVDLEAFSQFTKIITPA 187
E++ T G ++ RK E +G+ N+ E +D++ + +F+++ T
Sbjct: 757 ESYTLTPEVGELIEKVRKANQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKC 936
Query: 188 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRG 247
I + V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R
Sbjct: 937 IIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRT 1116
Query: 248 QLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
Q+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE
Sbjct: 1117QMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPL 1296
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
L A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+
Sbjct: 1297LEALKVYVRKRRPSQPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEML 1473
Query: 368 ED 369
E+
Sbjct: 1474EN 1479
>gb|U15211.1|RNU15211 Rattus norvegicus retinoic acid receptor alpha 2 isoform (RAR)
mRNA, complete cds
Length = 2130
Score = 225 bits (573), Expect = 6e-57
Identities = 130/362 (35%), Positives = 195/362 (52%), Gaps = 7/362 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 493 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 666
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + +K KPE +
Sbjct: 667 QKCFEVGMSKESVRNDRNK-------------------KKKETPKPE-----------CS 756
Query: 135 EAHVATNAQGSHWKQKRKFLPE------DIGQAPIVNAPEGG-KVDLEAFSQFTKIITPA 187
E++ T G ++ RK E +G+ N+ E +D++ + +F+++ T
Sbjct: 757 ESYTLTPEVGELIEKVRKANQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKC 936
Query: 188 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRG 247
I + V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R
Sbjct: 937 IIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRT 1116
Query: 248 QLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
Q+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE
Sbjct: 1117QMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPL 1296
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
L A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+
Sbjct: 1297LEALKVYVRKRRPSQPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEML 1473
Query: 368 ED 369
E+
Sbjct: 1474EN 1479
>emb|X59396.1|XLRARGB Xenopus laevis mRNA for retinoic acid receptor gamma B
Length = 2077
Score = 225 bits (573), Expect = 6e-57
Identities = 130/355 (36%), Positives = 193/355 (53%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 304 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRL 477
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + + + E E ELI+ V+
Sbjct: 478 QKCFQVGMSKEAVRNDRNKKKKEIKE------------EVVLPDSYEMPPEMEELIQKVS 621
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A + ++DL + +F+++ T I ++V+F
Sbjct: 622 KAHQETFPSLC---QLGKYTTNS-------SADQRVQLDLGLWDKFSELSTKCIIKIVEF 771
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 772 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 951
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E++EK QE L + Y
Sbjct: 952 GPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVEKLQEPLLEGLKFY 1131
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1132ARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKLEIPGPM-PPLIREMLEN 1293
>emb|X17586.1|NVRARDG Newt mRNA for retinoic receptor delta (RAR-delta)
Length = 1600
Score = 224 bits (571), Expect = 1e-56
Identities = 129/355 (36%), Positives = 194/355 (54%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 293 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 466
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ + E E LI+ V+
Sbjct: 467 QKCFEVGMSKEAVRNDRNKKKKEIK-------------EEVVTDSYEMPPEMEALIQKVS 607
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 608 KAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWHKFSELATKCIIKIVEF 757
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 758 AKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 937
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L A + Y
Sbjct: 938 GPLTDLVFAFAEQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIY 1117
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1118ARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1279
>emb|X69944.1|NVRARD1AB N.viridescens retinoic acid receptor delta 1a and 1b cDNA
Length = 2424
Score = 224 bits (571), Expect = 1e-56
Identities = 129/355 (36%), Positives = 194/355 (54%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 1117 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 1290
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ + E E LI+ V+
Sbjct: 1291 QKCFEVGMSKEAVRNDRNKKKKEIK-------------EEVVTDSYEMPPEMEALIQKVS 1431
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 1432 KAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWHKFSELATKCIIKIVEF 1581
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1582 AKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1761
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L A + Y
Sbjct: 1762 GPLTDLVFAFAEQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIY 1941
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1942 ARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 2103
>gb|AF206315.1|AF206315 Ambystoma mexicanum retonoic acid receptor gamma 2 (NR1B3b) mRNA,
complete cds
Length = 4469
Score = 224 bits (570), Expect = 1e-56
Identities = 129/355 (36%), Positives = 193/355 (54%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 344 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 517
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ + E E LI V+
Sbjct: 518 QKCFEVGMSKEAVRNDRNKKKKEIK-------------EEVVTDSYEMPPEMEALIAKVS 658
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 659 KAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEF 808
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 809 AKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 988
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L A + Y
Sbjct: 989 GPLTDLVFAFAEQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIY 1168
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1169ARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1330
>gb|M57707.1|HUMRARG Human retinoic acid receptor gamma mRNA, complete cds
Length = 1576
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 467 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 640
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 641 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 766
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 767 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 916
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 917 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1096
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1097HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1276
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1277ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1453
>gb|BC019098.1|BC019098 Homo sapiens, retinoic acid receptor, gamma, clone MGC:29569
IMAGE:5013273, mRNA, complete cds
Length = 2663
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 405 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 578
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 579 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 704
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 705 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 854
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 855 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1034
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1035HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1214
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1215ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1391
>gb|M24857.1|HUMHRARC Human retinoic acid receptor gamma mRNA, complete cds
Length = 1903
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 682 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 855
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 856 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 981
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 982 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 1131
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 1132 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1311
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1312 HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1491
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1492 ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1668
>ref|XM_029728.3| Homo sapiens retinoic acid receptor, gamma (RARG), mRNA
Length = 2678
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 475 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 648
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 649 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 774
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 775 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 924
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 925 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1104
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1105HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1284
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1285ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1461
>gb|BC012923.1|BC012923 Mus musculus, Similar to retinoic acid receptor, gamma, clone
MGC:11555 IMAGE:3154037, mRNA, complete cds
Length = 2381
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 689 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 862
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 863 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 988
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 989 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 1138
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 1139 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1318
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1319 HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1498
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1499 ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1675
>ref|NM_011244.1| Mus musculus retinoic acid receptor, gamma (Rarg), mRNA
Length = 1855
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 583 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 756
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 757 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 882
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 883 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 1032
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 1033KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1212
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1213HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1392
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1393ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1569
>emb|X15848.1|MMRARG Mouse mRNA for retinoic acid receptor gamma
Length = 1912
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 583 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 756
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 757 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 882
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 883 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 1032
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 1033KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1212
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1213HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1392
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1393ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1569
>gb|L12060.1|HUMRARG7A Homo sapiens retinoic acid receptor (gamma-7) mRNA
Length = 1597
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 376 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 549
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 550 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 675
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 676 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 825
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 826 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1005
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1006HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1185
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1186ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1362
>ref|NM_000966.1| Homo sapiens retinoic acid receptor, gamma (RARG), mRNA
Length = 2571
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 414 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 587
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 588 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 713
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 714 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 863
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 864 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1043
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1044HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1223
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1224ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1400
>gb|M38258.1|HUMRARGA Human retinoic acid receptor gamma 1 mRNA, complete cds
Length = 2571
Score = 224 bits (570), Expect = 1e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 414 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 587
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 588 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 713
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 714 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 863
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 864 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1043
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1044HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1223
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1224ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1400
>gb|S74156.1|S74156 zRAR gamma =retinoic acid receptor gamma [zebrafish, embryos, mRNA,
2109 nt]
Length = 2109
Score = 223 bits (569), Expect = 2e-56
Identities = 128/355 (36%), Positives = 189/355 (53%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 490 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 663
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + PE + EL ++V
Sbjct: 664 QKCFEVGMSKEAVRNDRNKKKKDVKDEVI---------------PPESYELSGELEELVN 798
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+ A Q K+ I ++DL + +F+++ T I ++V+F
Sbjct: 799 KVSKAHQETFPSLCQLGKYTTNSSSDHRI-------QLDLGLWDKFSELSTKCIIKIVEF 957
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 958 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1137
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L ER+++ QE L A + Y
Sbjct: 1138GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPERVDRLQEPLLEALKIY 1317
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + H +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1318ARRRRPNKPHMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1479
>gb|BC013709.1|BC013709 Mus musculus, retinoic acid receptor, gamma, clone MGC:18523
IMAGE:3989967, mRNA, complete cds
Length = 2553
Score = 223 bits (569), Expect = 2e-56
Identities = 129/355 (36%), Positives = 194/355 (54%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 317 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 490
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + ++ + E + + ELI V+
Sbjct: 491 QKCFEVGMSKEAVRNDRNKKKKEVK-------------EEGLPDSYELSPQLEELITKVS 631
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 632 KAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEF 781
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 782 AKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 961
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L A Y
Sbjct: 962 GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLY 1141
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1142ARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1303
>gb|AY046945.1| Mesocricetus auratus retinoic acid receptor gamma-2 gene, complete
cds
Length = 2510
Score = 223 bits (569), Expect = 2e-56
Identities = 131/360 (36%), Positives = 194/360 (53%), Gaps = 5/360 (1%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 323 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 496
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 497 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEECSPDSYELSPQLEEL 622
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 623 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 772
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 773 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 952
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 953 HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1132
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1133ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1309
>gb|AF342939.1|AF342939 Danio rerio retinoic acid receptor gamma 1 mRNA, complete cds
Length = 2103
Score = 223 bits (569), Expect = 2e-56
Identities = 128/355 (36%), Positives = 189/355 (53%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 490 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 663
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + PE + EL ++V
Sbjct: 664 QKCFEVGMSKEAVRNDRNKKKKDVKDEVI---------------PPESYELSGELEELVN 798
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+ A Q K+ I ++DL + +F+++ T I ++V+F
Sbjct: 799 KVSKAHQETFPSLCQLGKYTTNSSSDHRI-------QLDLGLWDKFSELSTKCIIKIVEF 957
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 958 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1137
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L ER+++ QE L A + Y
Sbjct: 1138GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPERVDRLQEPLLEALKIY 1317
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + H +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1318ARRRRPNKPHMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1479
>gb|AF206316.1|AF206316S1 Ambystoma mexicanum retonoic acid receptor gamma 2I (NR1B3c) mRNA,
complete cds
Length = 1426
Score = 223 bits (567), Expect = 3e-56
Identities = 129/355 (36%), Positives = 190/355 (53%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 305 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 478
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM SK + ++ + E E LI V+
Sbjct: 479 QKCFEVGM--------SKEVVAAAAVRNDRNKKKKEIKEEVVTDSYEMPPEMEALIAKVS 634
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+AH T Q K+ +A ++DL + +F+++ T I ++V+F
Sbjct: 635 KAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEF 784
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 785 AKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 964
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L A + Y
Sbjct: 965 GPLTDLVFAFAEQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIY 1144
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ + + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1145ARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1306
>gb|M34475.1|MUSRARGB Mouse retinoic acid receptor gamma (RAR-gamma-B) mRNA, complete cds
Length = 2496
Score = 222 bits (566), Expect = 4e-56
Identities = 131/360 (36%), Positives = 193/360 (53%), Gaps = 5/360 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 301 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 474
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 475 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 600
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 601 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 750
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 751 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 930
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 931 HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1110
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1111ALRLYARRRDPAKPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1287
>gb|M34476.1|MUSRARGA Mouse retinoic acid receptor gamma (mRAR-gamma-A) mRNA, complete
cds
Length = 2715
Score = 222 bits (566), Expect = 4e-56
Identities = 131/360 (36%), Positives = 193/360 (53%), Gaps = 5/360 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 520 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 693
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEW-----EL 129
+KC VGM+ + V +D + +K + + P E EL
Sbjct: 694 QKCFEVGMSKEAVRNDRNKK------------------KKEVKEEGSPDSYELSPQLEEL 819
Query: 130 IKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAIT 189
I V++AH T Q K+ +A ++DL + +F+++ T I
Sbjct: 820 ITKVSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCII 969
Query: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
++V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+
Sbjct: 970 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 1149
Query: 250 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLL 309
N G G ++D +F L +DDTE LL A+ L+ DR L E+++K QE L
Sbjct: 1150HNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLE 1329
Query: 310 AFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
A Y R + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1330ALRLYARRRDPAKPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1506
>emb|X73973.1|GGRARG2 G.gallus RAR-gamma2 mRNA for retinoic acid receptor
Length = 1584
Score = 222 bits (565), Expect = 5e-56
Identities = 129/355 (36%), Positives = 191/355 (53%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 432 CFVCSDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRL 605
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + +++ PE + ELI+ V+
Sbjct: 606 QKCFEVGMSKEAVRNDRNK--------------KKKEVKEEAADSPELSPALEELIQKVS 743
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
AH T Q K+ Q + ++D + +F+++ T I ++V+F
Sbjct: 744 RAHQETFPSLC---QLGKYTMSSSAQHRV-------QLDPGLWDKFSELATKCIIKIVEF 893
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK+LP F L DQI LLK C++I+ LR RY E +T+T + + + R Q+ N G
Sbjct: 894 AKRLPGFTALSIADQITLLKAACLDILMLRICTRYTLEQDTMTFSDGLTLNRTQMHNAGF 1073
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L E++E+ QE L A Y
Sbjct: 1074GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRQDLEEPEQVERLQEPLLEALRVY 1253
Query: 315 INYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
R+ H +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1254ARRRRPSKPHMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1415
>gb|L11445.1|XELXRARA Xenopus laevis mRNA sequence
Length = 1791
Score = 221 bits (564), Expect = 6e-56
Identities = 129/362 (35%), Positives = 193/362 (52%), Gaps = 7/362 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 669 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 842
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTD------EEWE 128
+KC VGM+ + V +D + +K KPE + E +
Sbjct: 843 QKCFEVGMSKESVRNDRNK-------------------KKKESPKPEAIESYILSPETQD 965
Query: 129 LIKIVTEAHVAT-NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPA 187
LI+ V +AH T A K F E + +D++ + +F+++ T
Sbjct: 966 LIEKVQKAHQETFPALCQLGKYTTSFSSE-----------QRVSLDIDLWDKFSELSTKC 1112
Query: 188 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRG 247
I + V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R
Sbjct: 1113IIKTVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRT 1292
Query: 248 QLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
Q+ N G G ++D +F +DD E LL A+ L+ DR L ++++K QE
Sbjct: 1293QMHNAGFGPLTDLVFAFANQPVPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPL 1472
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
L A + Y+ R+ H +PK+LMK+TDLR + A A R + +K+E P + PL E+
Sbjct: 1473LEALKIYVRTRRPQKPHMFPKMLMKITDLRTVSAKGAERVITLKMEIPGAM--PLIQEML 1646
Query: 368 ED 369
E+
Sbjct: 1647EN 1652
>emb|AJ238614.1|SSC238614 Sus scrofa mRNA for thyroid hormone receptor beta 1 encoded by
c-erbA-b1 gene, partial
Length = 611
Score = 217 bits (553), Expect = 1e-54
Identities = 99/121 (81%), Positives = 105/121 (85%)
Frame = +2
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 62
GYIPSYLD+DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+Y+CKYEGKCVID
Sbjct: 248 GYIPSYLDEDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYACKYEGKCVID 427
Query: 63 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP 122
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQ++IGHKPEP
Sbjct: 428 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQRSIGHKPEP 607
Query: 123 T 123
T
Sbjct: 608 T 610
>ref|NM_009024.1| Mus musculus retinoic acid receptor, alpha (Rara), mRNA
Length = 1759
Score = 216 bits (549), Expect = 3e-54
Identities = 124/333 (37%), Positives = 180/333 (53%), Gaps = 6/333 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 666 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 839
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D K+ +K KPE T E E
Sbjct: 840 QKCFDVGMSKESVRNDRKK-------------------KKKEAPKPECSESYSLTPEVGE 962
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 963 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1112
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +TLT + + + R Q
Sbjct: 1113IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTLTFSDGLTLNRTQ 1292
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE L
Sbjct: 1293MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1472
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGA 341
A + Y+ R+ H +PK+LMK+TDLR I A
Sbjct: 1473EALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 1571
>gb|M60909.1|MUSRARAP Mouse retinoic acid receptor alpha' mRNA, complete cds
Length = 1759
Score = 216 bits (549), Expect = 3e-54
Identities = 124/333 (37%), Positives = 180/333 (53%), Gaps = 6/333 (1%)
Frame = +3
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 666 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 839
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D K+ +K KPE T E E
Sbjct: 840 QKCFDVGMSKESVRNDRKK-------------------KKKEAPKPECSESYSLTPEVGE 962
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 963 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1112
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +TLT + + + R Q
Sbjct: 1113IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTLTFSDGLTLNRTQ 1292
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE L
Sbjct: 1293MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1472
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGA 341
A + Y+ R+ H +PK+LMK+TDLR I A
Sbjct: 1473EALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 1571
>emb|X57528.1|MMRARA M.musculus mRNA for retinoic acid receptor-alpha
Length = 1926
Score = 213 bits (542), Expect = 2e-53
Identities = 122/333 (36%), Positives = 179/333 (53%), Gaps = 6/333 (1%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 827 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 1000
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 1001 QKCFDVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEVGE 1123
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 1124 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1273
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 1274 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1453
Query: 249 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFL 308
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ QE L
Sbjct: 1454 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1633
Query: 309 LAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGA 341
A + Y+ R+ H +PK+LMK+TDLR I A
Sbjct: 1634 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 1732
>dbj|D86614.1|D86614 Polyandrocarpa misakiensis mRNA for retinoic acid receptor
homologue, partial cds
Length = 1987
Score = 197 bits (501), Expect = 1e-48
Identities = 116/348 (33%), Positives = 182/348 (51%), Gaps = 11/348 (3%)
Frame = +3
Query: 33 EGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSK 92
EGCKGFFRR++QKN+ Y+C CVI+K TR++CQ CR +KC VGM + V +D
Sbjct: 3 EGCKGFFRRSVQKNMQ--YTCHRNKNCVINKSTRSRCQYCRLQKCFQVGMLKESVRNDRN 176
Query: 93 RLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVAT-----------N 141
+ ++ + T E ++ +V +AH+ T
Sbjct: 177 KKRGKEKDGKTGDTSPSGQPEEIV-----VTPEIENIVSVVAKAHLDTFPKNEDLNKYNT 341
Query: 142 AQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMF 201
A+G K P D +P VD++ +S+F+ + T +I ++V+FAK +P F
Sbjct: 342 AEGQGDKPLSPPTPSDASGSP-------PPVDVKLWSKFSDLSTKSIIKIVEFAKSVPGF 500
Query: 202 CELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAI 261
+L DQI LLK C+EI+ R RYD ++T++ + + + R QL+N G +++ +
Sbjct: 501 TDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLTLNRDQLRNCAFGPMTEQV 680
Query: 262 FDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHH 321
F SL+ F+LD TE LL A+ LM +DR L E++EK QE + + + ++ +
Sbjct: 681 FGFAKSLTPFDLDHTEGGLLCAICLMCADRTELEDPEKVEKPQEPLVEGLKWFARKKRPN 860
Query: 322 VAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
H +PK+LMK+ DLR IG R + ++ E P E PPL E+ D
Sbjct: 861 KPHVFPKMLMKIADLRCIGFKGGDRAMSIRKEMPKESMPPLMREMLVD 1004
>gb|AF342940.1|AF342940 Danio rerio retinoic acid receptor gamma 2 mRNA, partial cds
Length = 1101
Score = 195 bits (495), Expect = 6e-48
Identities = 111/315 (35%), Positives = 163/315 (51%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 229 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 402
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + PE + EL ++V
Sbjct: 403 QKCFEVGMSKEAVRNDRNKKKKDVKDEVI---------------PPESYELSGELEELVN 537
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+ A Q K+ I ++DL + +F+++ T I ++V+F
Sbjct: 538 KVSKAHQETFPSLCQLGKYTTNSSSDHRI-------QLDLGLWDKFSELSTKCIIKIVEF 696
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 697 AKALPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 876
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L ER+++ QE L A + Y
Sbjct: 877 GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPERVDRLQEPLLEALKIY 1056
Query: 315 INYRKHHVAHFWPKL 329
R+ + H +PK+
Sbjct: 1057ARRRRPNKPHMFPKI 1101
>gb|L03400.1|ZEFRARGII Zebrafish retinoic acid receptor gamma-2 (RAR-gamma) mRNA, partial
cds
Length = 1101
Score = 195 bits (495), Expect = 6e-48
Identities = 111/315 (35%), Positives = 163/315 (51%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 229 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 402
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC VGM+ + V +D + PE + EL ++V
Sbjct: 403 QKCFEVGMSKEAVRNDRNKKKKDVKDEVI---------------PPESYELSGELEELVN 537
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDF 194
+ A Q K+ I ++DL + +F+++ T I ++V+F
Sbjct: 538 KVSKAHQETFPSLCQLGKYTTNSSSDHRI-------QLDLGLWDKFSELSTKCIIKIVEF 696
Query: 195 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL 254
AK LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 697 AKALPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 876
Query: 255 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHY 314
G ++D +F L +DDTE LL A+ L+ DR L ER+++ QE L A + Y
Sbjct: 877 GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPERVDRLQEPLLEALKIY 1056
Query: 315 INYRKHHVAHFWPKL 329
R+ + H +PK+
Sbjct: 1057ARRRRPNKPHMFPKI 1101
>ref|NM_005693.1| Homo sapiens nuclear receptor subfamily 1, group H, member 3
(NR1H3), mRNA
Length = 1528
Score = 192 bits (488), Expect = 4e-47
Identities = 112/361 (31%), Positives = 191/361 (52%), Gaps = 4/361 (1%)
Frame = +3
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
+ELC VCGDKA+G+HY ++CEGCKGFFRR++ K H Y C G C +D R +CQE
Sbjct: 318 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAH--YICHSGGHCPMDTYMRRKCQE 491
Query: 72 CRFKKCIFVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKTIGHK--PEPTDEEWE 128
CR +KC GM + VL + + RL +++ + P+ + E+
Sbjct: 492 CRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRRSSPPQILPQLSPEQLG 671
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I+ + A N + + + + P P+ P + + F+ FT++ ++
Sbjct: 672 MIEKLVAAQQQCNRRS--FSDRLRVTPW-----PMAPDPHSREARQQRFAHFTELAIVSV 830
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE++T + + R
Sbjct: 831 QEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNRED 1010
Query: 249 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
GL V + IF+ +++ L+D E ALL A+ + S+DRP + ++E+ Q +
Sbjct: 1011FAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTY 1190
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
+ A Y++ H +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1191VEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1364
Query: 368 E 368
+
Sbjct: 1365D 1367
>gb|U22662.1|HSU22662 Human nuclear orphan receptor LXR-alpha mRNA, complete cds
Length = 1528
Score = 192 bits (488), Expect = 4e-47
Identities = 112/361 (31%), Positives = 191/361 (52%), Gaps = 4/361 (1%)
Frame = +3
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
+ELC VCGDKA+G+HY ++CEGCKGFFRR++ K H Y C G C +D R +CQE
Sbjct: 318 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAH--YICHSGGHCPMDTYMRRKCQE 491
Query: 72 CRFKKCIFVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKTIGHK--PEPTDEEWE 128
CR +KC GM + VL + + RL +++ + P+ + E+
Sbjct: 492 CRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRRSSPPQILPQLSPEQLG 671
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I+ + A N + + + + P P+ P + + F+ FT++ ++
Sbjct: 672 MIEKLVAAQQQCNRRS--FSDRLRVTPW-----PMAPDPHSREARQQRFAHFTELAIVSV 830
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE++T + + R
Sbjct: 831 QEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNRED 1010
Query: 249 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
GL V + IF+ +++ L+D E ALL A+ + S+DRP + ++E+ Q +
Sbjct: 1011FAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTY 1190
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
+ A Y++ H +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1191VEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1364
Query: 368 E 368
+
Sbjct: 1365D 1367
>emb|Y11533.1|TMECDYREC T.molitor mRNA for ecdysone receptor
Length = 2469
Score = 192 bits (487), Expect = 5e-47
Identities = 125/373 (33%), Positives = 186/373 (49%), Gaps = 10/373 (2%)
Frame = +1
Query: 6 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVT 65
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR+I KN Y CKY C ID
Sbjct: 1192 PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYQCKYGNNCEIDMYM 1365
Query: 66 RNQCQECRFKKCIFVGMATDLVLDD----SKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
R +CQECR KKC+ VGM + V+ + KR I +PE
Sbjct: 1366 RRKCQECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKPNSTTNGSPDVIKIEPE 1545
Query: 122 PTDEEWELI----KIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLE-A 176
+D E L +I E + Q P + I+N P G+ E
Sbjct: 1546 LSDSEKTLTNGRNRISPEQEELILIHRLVYFQNEYEHPSEEDVKRIINQPIDGEDQCEIR 1725
Query: 177 FSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 236
F T+I + +V+FAK+LP F +L EDQI LLK C E+M R A RYD +S+++
Sbjct: 1726 FRHTTEITILTVQLIVEFAKRLPGFDKLLQEDQIALLKACSSEVMMFRMARRYDVQSDSI 1905
Query: 237 TLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVC 296
R G+G + + ++ S +D+ E ALL A+++ S+RP L+
Sbjct: 1906 LFVNNQPYPRDSYNLAGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVIF-SERPSLIE 2082
Query: 297 VERIEKCQEGFLLAFEHYI-NYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECP 355
++EK QE +L A Y+ N R + KLL +T+LR +G ++ + +K++
Sbjct: 2083 GWKVEKIQEIYLEALRAYVDNRRSPSRGTIFAKLLSVLTELRTLGNQNSEMCISLKLK-- 2256
Query: 356 TELFPPLFLEVFE 368
+ PP E+++
Sbjct: 2257 NKKLPPFLDEIWD 2295
>gb|AF085745.1|AF085745 Mus musculus nuclear orphan receptor LXR-alpha mRNA, complete cds
Length = 1665
Score = 190 bits (483), Expect = 2e-46
Identities = 112/361 (31%), Positives = 190/361 (52%), Gaps = 4/361 (1%)
Frame = +1
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
+ELC VCGDKA+G+HY ++CEGCKGFFRR++ K Y C G C +D R +CQE
Sbjct: 361 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAR--YVCHSGGHCPMDTYMRRKCQE 534
Query: 72 CRFKKCIFVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKTIGHK--PEPTDEEWE 128
CR +KC GM + VL + + RL + + + P+ + E+
Sbjct: 535 CRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLG 714
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I+ + A N + + + + P PI P+ + + F+ FT++ ++
Sbjct: 715 MIEKLVAAQQQCNRRS--FSDRLRVTP-----WPIAPDPQSREARQQRFAHFTELAIVSV 873
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE++T + + R
Sbjct: 874 QEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNRED 1053
Query: 249 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
GL V + IF+ +++ L+D E ALL A+ + S+DRP + ++E+ Q +
Sbjct: 1054FAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTY 1233
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
+ A Y++ H +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1234VEALHAYVSINHPHDPLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1407
Query: 368 E 368
+
Sbjct: 1408D 1410
>ref|NM_013839.1| Mus musculus nuclear receptor subfamily 1, group H, member 3
(Nr1h3), mRNA
Length = 1753
Score = 190 bits (483), Expect = 2e-46
Identities = 112/361 (31%), Positives = 190/361 (52%), Gaps = 4/361 (1%)
Frame = +1
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
+ELC VCGDKA+G+HY ++CEGCKGFFRR++ K Y C G C +D R +CQE
Sbjct: 466 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAR--YVCHSGGHCPMDTYMRRKCQE 639
Query: 72 CRFKKCIFVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKTIGHK--PEPTDEEWE 128
CR +KC GM + VL + + RL + + + P+ + E+
Sbjct: 640 CRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLG 819
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I+ + A N + + + + P PI P+ + + F+ FT++ ++
Sbjct: 820 MIEKLVAAQQQCNRRS--FSDRLRVTP-----WPIAPDPQSREARQQRFAHFTELAIVSV 978
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE++T + + R
Sbjct: 979 QEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNRED 1158
Query: 249 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
GL V + IF+ +++ L+D E ALL A+ + S+DRP + ++E+ Q +
Sbjct: 1159FAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTY 1338
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
+ A Y++ H +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1339VEALHAYVSINHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1512
Query: 368 E 368
+
Sbjct: 1513D 1515
>gb|BC012646.1|BC012646 Mus musculus, Similar to nuclear receptor subfamily 1, group H,
member 3, clone MGC:13756 IMAGE:4163109, mRNA, complete
cds
Length = 1765
Score = 190 bits (483), Expect = 2e-46
Identities = 112/361 (31%), Positives = 190/361 (52%), Gaps = 4/361 (1%)
Frame = +2
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
+ELC VCGDKA+G+HY ++CEGCKGFFRR++ K Y C G C +D R +CQE
Sbjct: 407 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAR--YVCHSGGHCPMDTYMRRKCQE 580
Query: 72 CRFKKCIFVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKTIGHK--PEPTDEEWE 128
CR +KC GM + VL + + RL + + + P+ + E+
Sbjct: 581 CRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLG 760
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I+ + A N + + + + P PI P+ + + F+ FT++ ++
Sbjct: 761 MIEKLVAAQQQCNRRS--FSDRLRVTP-----WPIAPDPQSREARQQRFAHFTELAIVSV 919
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE++T + + R
Sbjct: 920 QEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNRED 1099
Query: 249 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
GL V + IF+ +++ L+D E ALL A+ + S+DRP + ++E+ Q +
Sbjct: 1100FAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTY 1279
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
+ A Y++ H +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1280VEALHAYVSINHPHDPLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1453
Query: 368 E 368
+
Sbjct: 1454D 1456
>emb|AJ132601.1|MMU132601 Mus musculus mRNA for nuclear oxysterol receptor LXR-alpha
(LXR-alpha)
Length = 1686
Score = 190 bits (483), Expect = 2e-46
Identities = 112/361 (31%), Positives = 190/361 (52%), Gaps = 4/361 (1%)
Frame = +1
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
+ELC VCGDKA+G+HY ++CEGCKGFFRR++ K Y C G C +D R +CQE
Sbjct: 397 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAR--YVCHSGGHCPMDTYMRRKCQE 570
Query: 72 CRFKKCIFVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKTIGHK--PEPTDEEWE 128
CR +KC GM + VL + + RL + + + P+ + E+
Sbjct: 571 CRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLG 750
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I+ + A N + + + + P PI P+ + + F+ FT++ ++
Sbjct: 751 MIEKLVAAQQQCNRRS--FSDRLRVTP-----WPIAPDPQSREARQQRFAHFTELAIVSV 909
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE++T + + R
Sbjct: 910 QEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNRED 1089
Query: 249 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
GL V + IF+ +++ L+D E ALL A+ + S+DRP + ++E+ Q +
Sbjct: 1090FAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTY 1269
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
+ A Y++ H +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1270VEALHAYVSINHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1443
Query: 368 E 368
+
Sbjct: 1444D 1446
>ref|NM_031627.1| Rattus norvegicus nuclear receptor subfamily 1, group H, member 3
(Nr1h3), mRNA
Length = 1723
Score = 190 bits (482), Expect = 2e-46
Identities = 112/361 (31%), Positives = 189/361 (52%), Gaps = 4/361 (1%)
Frame = +1
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
+ELC VCGDKA+ +HY ++CEGCKGFFRR++ K Y C G C +D R +CQE
Sbjct: 301 NELCSVCGDKASAFHYNVLSCEGCKGFFRRSVIKGAR--YICHSGGHCPMDTYMRRKCQE 474
Query: 72 CRFKKCIFVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKTIGHK--PEPTDEEWE 128
CR +KC GM + VL + + RL + + + P+ + E+
Sbjct: 475 CRLRKCRHAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLG 654
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I+ + A N + + + + P PI P+ + + F+ FT++ ++
Sbjct: 655 MIEKLVAAQQQCNRRS--FSDRLRVTP-----WPIAPDPQSREARQQRFAHFTELAIVSV 813
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE++T + + R
Sbjct: 814 QEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNRED 993
Query: 249 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
GL V + IF+ S++ L+D E ALL A+ + S+DRP + ++E+ Q +
Sbjct: 994 FAKAGLQVEFINPIFEFSRSMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTY 1173
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
+ A Y++ H +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1174VEALHAYVSINHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1347
Query: 368 E 368
+
Sbjct: 1348D 1350
>gb|U11685.1|RNU11685 Rattus norvegicus orphan receptor RLD-1 (rld-1) mRNA, complete cds
Length = 1723
Score = 190 bits (482), Expect = 2e-46
Identities = 112/361 (31%), Positives = 189/361 (52%), Gaps = 4/361 (1%)
Frame = +1
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
+ELC VCGDKA+ +HY ++CEGCKGFFRR++ K Y C G C +D R +CQE
Sbjct: 301 NELCSVCGDKASAFHYNVLSCEGCKGFFRRSVIKGAR--YICHSGGHCPMDTYMRRKCQE 474
Query: 72 CRFKKCIFVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKTIGHK--PEPTDEEWE 128
CR +KC GM + VL + + RL + + + P+ + E+
Sbjct: 475 CRLRKCRHAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLG 654
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
+I+ + A N + + + + P PI P+ + + F+ FT++ ++
Sbjct: 655 MIEKLVAAQQQCNRRS--FSDRLRVTP-----WPIAPDPQSREARQQRFAHFTELAIVSV 813
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE++T + + R
Sbjct: 814 QEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNRED 993
Query: 249 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGF 307
GL V + IF+ S++ L+D E ALL A+ + S+DRP + ++E+ Q +
Sbjct: 994 FAKAGLQVEFINPIFEFSRSMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTY 1173
Query: 308 LLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
+ A Y++ H +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1174VEALHAYVSINHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1347
Query: 368 E 368
+
Sbjct: 1348D 1350
>dbj|AB073784.1|AB073784 Paralichthys olivaceus fRAR-2 mRNA for retinoic acid receptor
unknown type, partial cds
Length = 854
Score = 187 bits (476), Expect = 1e-45
Identities = 106/309 (34%), Positives = 164/309 (52%)
Frame = +1
Query: 21 KATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFV 80
K++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR +KC V
Sbjct: 1 KSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRLQKCFAV 174
Query: 81 GMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVAT 140
GM+ + V +D + + + E T E +I+ + +AH T
Sbjct: 175 GMSKESVRNDRNKKKKESP-------------KPELAESYELTAELESIIEKIRKAHQET 315
Query: 141 NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPM 200
Q K+ +A ++DL + +F+++ T I ++V+FAK++P
Sbjct: 316 FPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRVPG 465
Query: 201 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDA 260
F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D
Sbjct: 466 FTGLTIADQITLLKAACLDILILRICTRYTPDKDTMTFSDGLTLNRTQMHNAGFGPLTDL 645
Query: 261 IFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKH 320
+F L +DDTE LL A+ L+S DR L ++++ QE L A + Y+ R+
Sbjct: 646 VFTFANQLLPIEMDDTETGLLSAICLISGDRQDLEEPSKVDQLQEPLLEALKIYVRKRRP 825
Query: 321 HVAHFWPKL 329
H +PK+
Sbjct: 826 SKPHMFPKM 852
>dbj|AB073781.1|AB073781 Paralichthys olivaceus fRARg mRNA for retinoic acid receptor gamma,
partial cds
Length = 857
Score = 187 bits (474), Expect = 2e-45
Identities = 107/309 (34%), Positives = 164/309 (52%)
Frame = +1
Query: 21 KATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFV 80
K++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR +KC V
Sbjct: 1 KSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEV 174
Query: 81 GMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVAT 140
GM+ + V +D + + + E + E EL+ V++AH T
Sbjct: 175 GMSKEAVRNDRNKKKKDVKE------------EVVLPESYELSGELEELVNKVSKAHQET 318
Query: 141 NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPM 200
Q K+ + ++DL + +F+++ T I ++V+FAK+LP
Sbjct: 319 FPS---LGQLGKYTTNSSSDHRV-------QLDLGLWDKFSELSTKCIIKIVEFAKRLPG 468
Query: 201 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDA 260
F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D
Sbjct: 469 FTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDL 648
Query: 261 IFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKH 320
+F L +DDTE LL A+ L+ DR L ++++K QE L A + Y R+
Sbjct: 649 VFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPQKVDKLQEPLLEALKIYARRRRP 828
Query: 321 HVAHFWPKL 329
+ H +PK+
Sbjct: 829 NKPHMFPKM 855
>gb|AF047467.1|AF047467 Sparus aurata thyroid hormone receptor alpha mRNA, partial cds
Length = 386
Score = 186 bits (471), Expect = 4e-45
Identities = 90/114 (78%), Positives = 99/114 (85%)
Frame = +1
Query: 114 KTIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 173
+T+ +PEP EWELI++VTEAH TNAQGS WKQKRKFL +DIGQ P+V EG KVD
Sbjct: 43 RTLQTRPEPNTAEWELIRMVTEAHRHTNAQGSSWKQKRKFLSDDIGQGPVVPTSEGDKVD 222
Query: 174 LEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 227
LEAFS+FTKI+TPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAV
Sbjct: 223 LEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 384
>gb|AF049136.1|AF049136 Locusta migratoria ecdysone receptor mRNA, complete cds
Length = 2401
Score = 185 bits (470), Expect = 5e-45
Identities = 119/368 (32%), Positives = 182/368 (49%), Gaps = 10/368 (2%)
Frame = +1
Query: 11 KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQ 70
++ELC+VCGD+A+GYHY +TCEGCKGFFRR+I KN Y CKY C ID R +CQ
Sbjct: 1066 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYQCKYGNNCEIDMYMRRKCQ 1239
Query: 71 ECRFKKCIFVGMATDLVL---------DDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPE 121
ECR KKC+ VGM + V+ + K + K I K E
Sbjct: 1240 ECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKDKDKPNSTTNGSPEVMMLKDIDAKVE 1419
Query: 122 PTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 181
P IK V+ + +++ + + E+ + EG F T
Sbjct: 1420 PERPLSNGIKPVSPEQEELIHRLVYFQNEYESPSEEDLRRVTSQPTEGEDQSDVRFRHIT 1599
Query: 182 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 241
+I + +V+FAK+LP F +L EDQI LLK C E+M R A RYD S+++
Sbjct: 1600 EITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVNSDSILFANN 1779
Query: 242 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIE 301
T+ G+G + + + + +D+ E ALL A+++ S+RP LV ++E
Sbjct: 1780 QPYTKDSYNLAGMGETIEDMLRFCRQMYAMKVDNAEYALLTAIVIF-SERPSLVEGWKVE 1956
Query: 302 KCQEGFLLAFEHYI-NYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFP 360
K QE +L A + Y+ N R+ + KLL +T+LR +G ++ +K++ + P
Sbjct: 1957 KIQEIYLEALKAYVDNRRRPKSGTIFAKLLSVLTELRTLGNQNSEMCFSLKLK--NKKLP 2130
Query: 361 PLFLEVFE 368
P E+++
Sbjct: 2131 PFLAEIWD 2154
>dbj|AB073782.1|AB073782 Paralichthys olivaceus fRAR-1 mRNA for retinoic acid receptor
unknown type, partial cds
Length = 860
Score = 185 bits (470), Expect = 5e-45
Identities = 106/309 (34%), Positives = 163/309 (52%)
Frame = +1
Query: 21 KATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFV 80
K++GYHY CEGCKGFFRR++QKN+ Y+C + C+I+K+TRN+CQ CR ++C
Sbjct: 1 KSSGYHYGVSACEGCKGFFRRSVQKNM--VYTCHRDRNCIINKITRNRCQYCRLQRCFAA 174
Query: 81 GMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVAT 140
GM+ + V +D R ++ TI E T E +++ + AH T
Sbjct: 175 GMSRESVRNDRIR-----------RKGKKEAVKMTIMETYELTSELGLIVEKICRAHTET 321
Query: 141 NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPM 200
Q K+ I ++DL + +F+++ T I +VV+FAK++P
Sbjct: 322 FPALC---QLGKYTTNSSSDHRI-------QLDLGLWDKFSELATKCIIKVVEFAKRVPG 471
Query: 201 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDA 260
F L DQI LLK C++I+ LR RY P+ +T+T + + +TR Q+ N G G ++D
Sbjct: 472 FTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLTRTQIHNAGFGPLTDQ 651
Query: 261 IFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKH 320
+F L +DDTE LL A+ L+S DR L ++E QE L A + Y R+
Sbjct: 652 VFTFAGQLLPLEMDDTESGLLSAICLVSGDRQDLEEPSKVEVLQEPLLEALKIYSRKRRP 831
Query: 321 HVAHFWPKL 329
+ H +PK+
Sbjct: 832 SMPHMFPKM 858
>gb|AF034086.2|AF034086 Celuca pugilator ecdysteroid receptor (UpEcR) mRNA, complete cds
Length = 4562
Score = 184 bits (468), Expect = 8e-45
Identities = 116/367 (31%), Positives = 183/367 (49%), Gaps = 9/367 (2%)
Frame = +1
Query: 11 KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQ 70
++ELC+VCGD+A+GYHY +TCEGCKGFFRR+I KN Y CKY C +D R +CQ
Sbjct: 703 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYQCKYGNNCEMDMYMRRKCQ 876
Query: 71 ECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGH-KPEPTDEEWEL 129
ECR KKC+ VGM + V+ +S+ L I K P +
Sbjct: 877 ECRLKKCLNVGMRPECVVPESQCQVKREQKKARDKDKTYPSLGSPIAEDKAAPISPVSKD 1056
Query: 130 IKIVTEAHVATNAQGSH-------WKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 182
+ +V + + Q+ P + I +G F T+
Sbjct: 1057 MSAAPRLNVKPLTREQEELINTLVYYQEEFEQPTEADVKKIRFNFDGEDTSDMRFRHITE 1236
Query: 183 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 242
+ + +V+F+K+LP F L EDQI LLK C E+M LRAA RYD +++++
Sbjct: 1237 MTILTVQLIVEFSKQLPGFATLQREDQITLLKACSSEVMMLRAARRYDAKTDSIVFGNNY 1416
Query: 243 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 302
T+ GLG ++ +F SL +D+ E ALL A+ + S+RP L ++++EK
Sbjct: 1417 PYTQASYALAGLGESAEILFRFCRSLCKMKVDNAEYALLAAIAIF-SERPNLKELKKVEK 1593
Query: 303 CQEGFLLAFEHYINYRKHHVAHF-WPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
QE +L A + Y+ R+ ++ + KLL +T+LR +G ++ + ++ + PP
Sbjct: 1594 LQEIYLEALKSYVENRRLPRSNMVFAKLLNILTELRTLGNINSEMCFSLTLK--NKRLPP 1767
Query: 362 LFLEVFE 368
E+++
Sbjct: 1768 FLAEIWD 1788
>dbj|AB073783.1|AB073783 Paralichthys olivaceus fRARa mRNA for retinoic acid receptor alpha,
partial cds
Length = 860
Score = 184 bits (466), Expect = 1e-44
Identities = 109/314 (34%), Positives = 165/314 (51%), Gaps = 5/314 (1%)
Frame = +1
Query: 21 KATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFV 80
K++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR +KC+ V
Sbjct: 1 KSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRLQKCLEV 174
Query: 81 GMATDL--VLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHV 138
GM+ + V +D + + T + P E+ +I V +AH
Sbjct: 175 GMSKECESVRNDRNKKKKDEKKQ-----------ECTESYVLSPDTEQ--MIDRVRKAHK 315
Query: 139 ATNAQGSHWKQKRKFLPE--DIGQAPIVNAPEGG-KVDLEAFSQFTKIITPAITRVVDFA 195
T P +G+ N+ E +D++ + +F+++ T I + V+FA
Sbjct: 316 ET-------------FPSLCQLGKYTTSNSSERRVSLDVDLWDKFSELSTKCIIKTVEFA 456
Query: 196 KKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLG 255
K+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G G
Sbjct: 457 KQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG 636
Query: 256 VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYI 315
++D +F L +DD E LL A+ L+ DR L E+++ QE L A + Y+
Sbjct: 637 PLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEEAEKVDVLQEPLLEALKIYV 816
Query: 316 NYRKHHVAHFWPKL 329
R+ H H +PK+
Sbjct: 817 RKRRPHKPHMFPKM 858
>gb|L35266.1|BMOECDYREC Bombyx mori 20-hydroxy-ecdysone receptor mRNA, complete cds
Length = 2711
Score = 176 bits (445), Expect = 4e-42
Identities = 116/394 (29%), Positives = 185/394 (46%), Gaps = 31/394 (7%)
Frame = +2
Query: 6 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVT 65
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 776 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYICKFGHACEMDMYM 949
Query: 66 RNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP----- 120
R +CQECR KKC+ VGM + V+ + + H P
Sbjct: 950 RRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKGILLPVSTTTVEDHMPPIMQC 1129
Query: 121 -EPTDEEWELIKIV----TEAHVATNAQGS---------------HWKQKRKFLPEDIGQ 160
P E + ++V +E + N Q + W Q+ P D
Sbjct: 1130 DPPPPEAARIHEVVPRYLSEKLMEQNRQKNIPPLSANQKSLIARLVWYQEGYEQPSDEDL 1309
Query: 161 APIVNAPEGGKVDLEA---FSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCC 217
+ + + D E+ F Q T++ + +V+FAK LP F ++ DQI LLK
Sbjct: 1310 KRVTQTWQSDEEDEESDLPFRQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLKASS 1489
Query: 218 MEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTE 277
E+M LR A RYD S+++ A TR + GG+ V + + + + +D+
Sbjct: 1490 SEVMMLRVARRYDAASDSVLFANNKAYTRDNYRQGGMAYVIEDLLHFCRCMFAMGMDNVH 1669
Query: 278 VALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYI---NYRKHHVAHFWPKLLMKVT 334
ALL A+++ SDRPGL +E+ Q +L YI N A + ++L +T
Sbjct: 1670 FALLTAIVIF-SDRPGLEQPSLVEEIQRYYLNTLRIYIINQNSASSRCAVIYGRILSVLT 1846
Query: 335 DLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
+LR +G +++ + +K++ PP E+++
Sbjct: 1847 ELRTLGTQNSNMCISLKLK--NRKLPPFLEEIWD 1942
>gb|U09419.1|MMU09419 Mus musculus retinoid X receptor interacting protein (RIP15) mRNA,
complete cds
Length = 1841
Score = 175 bits (443), Expect = 7e-42
Identities = 113/384 (29%), Positives = 183/384 (47%), Gaps = 28/384 (7%)
Frame = +2
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+ G C +D R +CQ C
Sbjct: 356 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRGSGTCQMDAFMRRKCQLC 535
Query: 73 RFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDE------- 125
R +KC GM VL + + +QK +P P E
Sbjct: 536 RLRKCKEAGMREQCVLSEEQ--------------IRKKRIQKQQQQQPPPPSEPAASSSG 673
Query: 126 -----------------EWELIKIVTEAHVATNAQGSHWKQ--KRKFLPED-IGQAPIVN 165
E E I++ + + Q KR F + + P+
Sbjct: 674 RPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGA 853
Query: 166 APEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRA 225
P+ + F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L
Sbjct: 854 DPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLET 1033
Query: 226 AVRYDPESETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAV 284
A RY+ E+E +T + ++ GL V + IF+ ++ LDD E ALL A+
Sbjct: 1034ARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAI 1213
Query: 285 LLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHA 344
+ S+DRP + R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+
Sbjct: 1214NIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHS 1393
Query: 345 SRFLHMKVECPTELFPPLFLEVFE 368
+ ++++ + PPL E+++
Sbjct: 1394EQVFALRLQ--DKKLPPLLSEIWD 1459
>emb|AJ224341.1|CCAJ4341 Ceratitis capitata mRNA for ecdysone receptor (EcR gene)
Length = 3217
Score = 175 bits (443), Expect = 7e-42
Identities = 117/375 (31%), Positives = 179/375 (47%), Gaps = 32/375 (8%)
Frame = +1
Query: 11 KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQ 70
++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D R +CQ
Sbjct: 994 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYCCKFGRSCEMDMYMRRKCQ 1167
Query: 71 ECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEE-WEL 129
ECR KKC+ VGM + V+ +++ I K E E EL
Sbjct: 1168 ECRMKKCLAVGMRPECVVPENQCAMKRREKKAQKEKEKQTTGNSPIICKTESIKNEILEL 1347
Query: 130 IKIVTEAH---------VATNAQGSH----------------WKQKRKFLPEDIGQAPIV 164
+ +H + + S+ W Q P + I+
Sbjct: 1348 MNCEPPSHPTCPLLPDDIVAKCKASNIPPLTRNQLAVIYKLIWYQDGYEQPSEEDLKRIM 1527
Query: 165 NAPEGGKVDLE-AFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 223
+ P+ + + +F T+I + +V+FAK LP F ++P EDQI LLK C E+M L
Sbjct: 1528 STPDENESPNDISFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMML 1707
Query: 224 RAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 283
R A RYD S+++ + TR K G+ + + + S +D+ E ALL A
Sbjct: 1708 RMARRYDHNSDSIFFANNRSYTRDAYKMAGVADNIEDLLHFCRQMYSMKVDNVEYALLTA 1887
Query: 284 VLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAH-----FWPKLLMKVTDLRM 338
+++ SDRPGL + +E+ Q ++ YI R H F+ KLL +T+LR
Sbjct: 1888 IVIF-SDRPGLEKAQLVEEIQSYYIDTLRVYIINR--HCGDSMSLVFFAKLLSILTELRT 2058
Query: 339 IGACHASRFLHMKVE 353
+G +A +K++
Sbjct: 2059 LGNQNAEMCFSLKLK 2103
>ref|NM_009473.1| Mus musculus nuclear receptor subfamily 1, group H, member 2
(Nr1h2), mRNA
Length = 1964
Score = 175 bits (443), Expect = 7e-42
Identities = 113/384 (29%), Positives = 183/384 (47%), Gaps = 28/384 (7%)
Frame = +1
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+ G C +D R +CQ C
Sbjct: 496 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRGSGTCQMDAFMRRKCQLC 675
Query: 73 RFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDE------- 125
R +KC GM VL + + +QK +P P E
Sbjct: 676 RLRKCKEAGMREQCVLSEEQ--------------IRKKRIQKQQQQQPPPPSEPAASSSG 813
Query: 126 -----------------EWELIKIVTEAHVATNAQGSHWKQ--KRKFLPED-IGQAPIVN 165
E E I++ + + Q KR F + + P+
Sbjct: 814 RPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGA 993
Query: 166 APEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRA 225
P+ + F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L
Sbjct: 994 DPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLET 1173
Query: 226 AVRYDPESETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAV 284
A RY+ E+E +T + ++ GL V + IF+ ++ LDD E ALL A+
Sbjct: 1174ARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAI 1353
Query: 285 LLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHA 344
+ S+DRP + R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+
Sbjct: 1354NIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHS 1533
Query: 345 SRFLHMKVECPTELFPPLFLEVFE 368
+ ++++ + PPL E+++
Sbjct: 1534EQVFALRLQ--DKKLPPLLSEIWD 1599
>ref|NM_031626.1| Rattus norvegicus nuclear receptor subfamily 1, group H, member 2
(Nr1h2), mRNA
Length = 1959
Score = 174 bits (442), Expect = 9e-42
Identities = 112/384 (29%), Positives = 179/384 (46%), Gaps = 28/384 (7%)
Frame = +1
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+ G C +D R +CQ C
Sbjct: 472 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRGSGTCQMDAFMRRKCQLC 651
Query: 73 RFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKI 132
R +KC GM VL + + +QK +P P E
Sbjct: 652 RLRKCKEAGMREQCVLSEEQ--------------IRKKKIQKQQQQQPPPPTEPASGSSA 789
Query: 133 VTEAHVATNAQGSHWK--------------------------QKRKFLPED-IGQAPIVN 165
A T+ S KR F + + P+
Sbjct: 790 RPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAVQLQCNKRSFSDQPKVTPWPLGA 969
Query: 166 APEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRA 225
P+ + F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L
Sbjct: 970 DPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLET 1149
Query: 226 AVRYDPESETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAV 284
A RY+ E+E +T + ++ GL V + IF+ ++ LDD E ALL A+
Sbjct: 1150ARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAI 1329
Query: 285 LLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHA 344
+ S+DRP + R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+
Sbjct: 1330NIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHS 1509
Query: 345 SRFLHMKVECPTELFPPLFLEVFE 368
+ ++++ + PPL E+++
Sbjct: 1510EQVFALRLQ--DKKLPPLLSEIWD 1575
>gb|U14533.1|RNU14533 Rattus norvegicus orphan receptor mRNA, complete cds
Length = 1959
Score = 174 bits (442), Expect = 9e-42
Identities = 112/384 (29%), Positives = 179/384 (46%), Gaps = 28/384 (7%)
Frame = +1
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+ G C +D R +CQ C
Sbjct: 472 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRGSGTCQMDAFMRRKCQLC 651
Query: 73 RFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKI 132
R +KC GM VL + + +QK +P P E
Sbjct: 652 RLRKCKEAGMREQCVLSEEQ--------------IRKKKIQKQQQQQPPPPTEPASGSSA 789
Query: 133 VTEAHVATNAQGSHWK--------------------------QKRKFLPED-IGQAPIVN 165
A T+ S KR F + + P+
Sbjct: 790 RPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAVQLQCNKRSFSDQPKVTPWPLGA 969
Query: 166 APEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRA 225
P+ + F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L
Sbjct: 970 DPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLET 1149
Query: 226 AVRYDPESETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAV 284
A RY+ E+E +T + ++ GL V + IF+ ++ LDD E ALL A+
Sbjct: 1150ARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAI 1329
Query: 285 LLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHA 344
+ S+DRP + R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+
Sbjct: 1330NIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHS 1509
Query: 345 SRFLHMKVECPTELFPPLFLEVFE 368
+ ++++ + PPL E+++
Sbjct: 1510EQVFALRLQ--DKKLPPLLSEIWD 1575
>gb|U20389.1|RNU20389 Rattus norvegicus orphan nuclear receptor OR-1 mRNA, complete cds
Length = 1877
Score = 174 bits (442), Expect = 9e-42
Identities = 112/384 (29%), Positives = 179/384 (46%), Gaps = 28/384 (7%)
Frame = +2
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+ G C +D R +CQ C
Sbjct: 416 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRGSGTCQMDAFMRRKCQLC 595
Query: 73 RFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKI 132
R +KC GM VL + + +QK +P P E
Sbjct: 596 RLRKCKEAGMREQCVLSEEQ--------------IRKKKIQKQQQQQPPPPTEPASGSSA 733
Query: 133 VTEAHVATNAQGSHWK--------------------------QKRKFLPED-IGQAPIVN 165
A T+ S KR F + + P+
Sbjct: 734 RPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGA 913
Query: 166 APEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRA 225
P+ + F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L
Sbjct: 914 DPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLET 1093
Query: 226 AVRYDPESETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAV 284
A RY+ E+E +T + ++ GL V + IF+ ++ LDD E ALL A+
Sbjct: 1094ARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAI 1273
Query: 285 LLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHA 344
+ S+DRP + R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+
Sbjct: 1274NIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHS 1453
Query: 345 SRFLHMKVECPTELFPPLFLEVFE 368
+ ++++ + PPL E+++
Sbjct: 1454EQVFALRLQ--DKKLPPLLSEIWD 1519
>ref|NM_007121.1| Homo sapiens nuclear receptor subfamily 1, group H, member 2
(NR1H2), mRNA
Length = 2010
Score = 174 bits (441), Expect = 1e-41
Identities = 109/376 (28%), Positives = 180/376 (46%), Gaps = 20/376 (5%)
Frame = +2
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+ G C +D R +CQ+C
Sbjct: 497 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQC 676
Query: 73 RFKKCIFVGMATDLVLDDS----KRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPT----- 123
R +KC GM VL + K++ Q + P
Sbjct: 677 RLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGG 856
Query: 124 ---------DEEWELIKIVTEAHVATNAQGSHWKQKRKFLPED-IGQAPIVNAPEGGKVD 173
+ E + E + KR F + + P+ P+
Sbjct: 857 SEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDAR 1036
Query: 174 LEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 233
+ F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L A RY+ E+
Sbjct: 1037QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHET 1216
Query: 234 ETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRP 292
E +T + ++ GL V + IF+ ++ LDD E ALL A+ + S+DRP
Sbjct: 1217ECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRP 1396
Query: 293 GLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 352
+ R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+ + +++
Sbjct: 1397NVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRL 1576
Query: 353 ECPTELFPPLFLEVFE 368
+ + PPL E+++
Sbjct: 1577Q--DKKLPPLLSEIWD 1618
>gb|U07132.1|HSU07132 Human steroid hormone receptor Ner-I mRNA, complete cds
Length = 2010
Score = 174 bits (441), Expect = 1e-41
Identities = 109/376 (28%), Positives = 180/376 (46%), Gaps = 20/376 (5%)
Frame = +2
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+ G C +D R +CQ+C
Sbjct: 497 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQC 676
Query: 73 RFKKCIFVGMATDLVLDDS----KRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPT----- 123
R +KC GM VL + K++ Q + P
Sbjct: 677 RLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGG 856
Query: 124 ---------DEEWELIKIVTEAHVATNAQGSHWKQKRKFLPED-IGQAPIVNAPEGGKVD 173
+ E + E + KR F + + P+ P+
Sbjct: 857 SEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDAR 1036
Query: 174 LEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 233
+ F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L A RY+ E+
Sbjct: 1037QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHET 1216
Query: 234 ETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRP 292
E +T + ++ GL V + IF+ ++ LDD E ALL A+ + S+DRP
Sbjct: 1217ECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRP 1396
Query: 293 GLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 352
+ R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+ + +++
Sbjct: 1397NVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRL 1576
Query: 353 ECPTELFPPLFLEVFE 368
+ + PPL E+++
Sbjct: 1577Q--DKKLPPLLSEIWD 1618
>dbj|D43943.1|BMOBMECRB1 Silkworm mRNA for ecdysone receptor, complete cds
Length = 2720
Score = 174 bits (441), Expect = 1e-41
Identities = 114/391 (29%), Positives = 182/391 (46%), Gaps = 28/391 (7%)
Frame = +1
Query: 6 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVT 65
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 790 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYICKFGHACEMDMYM 963
Query: 66 RNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKP----- 120
R +CQECR KKC+ VGM + V+ + + H P
Sbjct: 964 RRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKGILLPVSTTTVEDHMPPIMQC 1143
Query: 121 -EPTDEEWELIKIV----TEAHVATNAQGS---------------HWKQKRKFLPEDIGQ 160
P E + ++V +E + N Q + W Q+ P D
Sbjct: 1144 DPPPPEAARIHEVVPRYLSEKLMEQNRQKNIPPLSANQKSLIARLVWYQEGYEQPSDEDL 1323
Query: 161 APIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 220
+ + E + F Q T++ + +V+FAK LP F ++ DQI LLK E+
Sbjct: 1324 KRVTQSDEEDEESDLPFRQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLKASSSEV 1503
Query: 221 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 280
M LR A RYD S+++ A TR + G+ V + + + + +D+ AL
Sbjct: 1504 MMLRVARRYDAASDSVLFANNKAYTRDNYRKAGMAYVIEDLLHFCRCMFAMGMDNVHFAL 1683
Query: 281 LQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYI---NYRKHHVAHFWPKLLMKVTDLR 337
L A+++ SDRPGL +E+ Q +L YI N A + ++L +T+LR
Sbjct: 1684 LTAIVIF-SDRPGLEQPSLVEEIQRYYLNTLRIYIINQNSASSRCAVIYGRILSVLTELR 1860
Query: 338 MIGACHASRFLHMKVECPTELFPPLFLEVFE 368
+G +++ + +K++ PP E+++
Sbjct: 1861 TLGTQNSNMCISLKLK--NRKLPPFLEEIWD 1947
>gb|BC007790.1|BC007790 Homo sapiens, nuclear receptor subfamily 1, group H, member 2,
clone MGC:14108 IMAGE:3636961, mRNA, complete cds
Length = 1934
Score = 174 bits (441), Expect = 1e-41
Identities = 109/376 (28%), Positives = 180/376 (46%), Gaps = 20/376 (5%)
Frame = +2
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+ G C +D R +CQ+C
Sbjct: 401 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQC 580
Query: 73 RFKKCIFVGMATDLVLDDS----KRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPT----- 123
R +KC GM VL + K++ Q + P
Sbjct: 581 RLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGG 760
Query: 124 ---------DEEWELIKIVTEAHVATNAQGSHWKQKRKFLPED-IGQAPIVNAPEGGKVD 173
+ E + E + KR F + + P+ P+
Sbjct: 761 SEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDAR 940
Query: 174 LEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 233
+ F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L A RY+ E+
Sbjct: 941 QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHET 1120
Query: 234 ETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRP 292
E +T + ++ GL V + IF+ ++ LDD E ALL A+ + S+DRP
Sbjct: 1121ECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRP 1300
Query: 293 GLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 352
+ R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+ + +++
Sbjct: 1301NVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRL 1480
Query: 353 ECPTELFPPLFLEVFE 368
+ + PPL E+++
Sbjct: 1481Q--DKKLPPLLSEIWD 1522
>gb|U14534.1|HSU14534 Human orphan receptor mRNA, partial cds
Length = 1746
Score = 174 bits (441), Expect = 1e-41
Identities = 109/376 (28%), Positives = 180/376 (46%), Gaps = 20/376 (5%)
Frame = +1
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+ G C +D R +CQ+C
Sbjct: 235 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQC 414
Query: 73 RFKKCIFVGMATDLVLDDS----KRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPT----- 123
R +KC GM VL + K++ Q + P
Sbjct: 415 RLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGG 594
Query: 124 ---------DEEWELIKIVTEAHVATNAQGSHWKQKRKFLPED-IGQAPIVNAPEGGKVD 173
+ E + E + KR F + + P+ P+
Sbjct: 595 SEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDAR 774
Query: 174 LEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 233
+ F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L A RY+ E+
Sbjct: 775 QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHET 954
Query: 234 ETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRP 292
E +T + ++ GL V + IF+ ++ LDD E ALL A+ + S+DRP
Sbjct: 955 ECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRP 1134
Query: 293 GLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 352
+ R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+ + +++
Sbjct: 1135NVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRL 1314
Query: 353 ECPTELFPPLFLEVFE 368
+ + PPL E+++
Sbjct: 1315Q--DKKLPPLLSEIWD 1356
>ref|XM_046419.3| Homo sapiens nuclear receptor subfamily 1, group H, member 2
(NR1H2), mRNA
Length = 1986
Score = 173 bits (438), Expect = 3e-41
Identities = 109/375 (29%), Positives = 183/375 (48%), Gaps = 19/375 (5%)
Frame = +2
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+ G C +D R +CQ+C
Sbjct: 476 ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQC 655
Query: 73 RFKKCIFVGMATDLVLDDSK---------RLAXXXXXXXXXXXXXXXXLQKTIGHKPEPT 123
R +KC GM VL + + + G P +
Sbjct: 656 RLRKCKEAGMREQCVLSEEQIRKKKIRKQQQESQSQSQSPVGPQGSSSSASGPGASPGGS 835
Query: 124 DE------EWELIKIVTEAHVATNAQGSHWKQ--KRKFLPED-IGQAPIVNAPEGGKVDL 174
+ E E +++ + + Q KR F + + P+ P+
Sbjct: 836 EAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQ 1015
Query: 175 EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 234
+ F+ FT++ ++ +VDFAK++P F +L EDQI LLK +EIM L A RY+ E+E
Sbjct: 1016QRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETE 1195
Query: 235 TLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 293
+T + ++ GL V + IF+ ++ LDD E ALL A+ + S+DRP
Sbjct: 1196CITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPN 1375
Query: 294 LVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVE 353
+ R+E Q+ ++ A Y ++ +P++LMK+ LR + + H+ + ++++
Sbjct: 1376VQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQ 1555
Query: 354 CPTELFPPLFLEVFE 368
+ PPL E+++
Sbjct: 1556--DKKLPPLLSEIWD 1594
>gb|AF405205.1|AF405205 Oncorhynchus mykiss thyroid hormone receptor-beta mRNA, partial cds
Length = 255
Score = 171 bits (434), Expect = 7e-41
Identities = 84/85 (98%), Positives = 85/85 (99%)
Frame = +1
Query: 172 VDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 231
VD+EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP
Sbjct: 1 VDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 180
Query: 232 ESETLTLNGEMAVTRGQLKNGGLGV 256
ESETLTLNGEMAVTRGQLKNGGLGV
Sbjct: 181 ESETLTLNGEMAVTRGQLKNGGLGV 255
>gb|AF092030.2|AF092030 Choristoneura fumiferana ecdysone receptor isoform A (EcR) mRNA,
complete cds
Length = 6852
Score = 171 bits (434), Expect = 7e-41
Identities = 120/396 (30%), Positives = 187/396 (46%), Gaps = 33/396 (8%)
Frame = +3
Query: 6 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVT 65
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 744 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYICKFGHACEMDMYM 917
Query: 66 RNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTI-GHKP---- 120
R +CQECR KKC+ VGM + V+ +++ T+ H P
Sbjct: 918 RRKCQECRLKKCLAVGMRPECVVPETQCAMKRKEKKAQKEKDKLPVSTTTVDDHMPPIMQ 1097
Query: 121 -EPTDEEWELI-----KIVTEAHVATNAQGS---------------HWKQKRKFLPEDIG 159
EP E I + +++ + TN Q + W Q P D
Sbjct: 1098 CEPPPPEAARIHEVVPRFLSDKLLETNRQKNIPQLTANQQFLIARLIWYQDGYEQPSDED 1277
Query: 160 QAPIV----NAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 215
I A + + F Q T++ + +V+FAK LP F ++ DQI LLK
Sbjct: 1278 LKRITQTWQQADDENEESDTPFRQITEMTILTVQLIVEFAKGLPGFAKISQPDQITLLKA 1457
Query: 216 CCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDD 275
C E+M LR A RYD S+++ A TR + G+ V + + + S LD+
Sbjct: 1458 CSSEVMMLRVARRYDAASDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMALDN 1637
Query: 276 TEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAH---FWPKLLMK 332
ALL AV++ SDRPGL + +E+ Q +L YI + A + K+L
Sbjct: 1638 IHYALLTAVVIF-SDRPGLEQPQLVEEIQRYYLNTLRIYILNQLSGSARSSVIYGKILSI 1814
Query: 333 VTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
+++LR +G +++ + +K++ PP E+++
Sbjct: 1815 LSELRTLGMQNSNMCISLKLK--NRKLPPFLEEIWD 1916
>gb|U29531.2|CFU29531 Choristoneura fumiferana ecdysteroid receptor EcR-B mRNA, complete
cds
Length = 3962
Score = 171 bits (434), Expect = 7e-41
Identities = 120/396 (30%), Positives = 187/396 (46%), Gaps = 33/396 (8%)
Frame = +1
Query: 6 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVT 65
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 634 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYICKFGHACEMDMYM 807
Query: 66 RNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTI-GHKP---- 120
R +CQECR KKC+ VGM + V+ +++ T+ H P
Sbjct: 808 RRKCQECRLKKCLAVGMRPECVVPETQCAMKRKEKKAQKEKDKLPVSTTTVDDHMPPIMQ 987
Query: 121 -EPTDEEWELI-----KIVTEAHVATNAQGS---------------HWKQKRKFLPEDIG 159
EP E I + +++ + TN Q + W Q P D
Sbjct: 988 CEPPPPEAARIHEVVPRFLSDKLLETNRQKNIPQLTANQQFLIARLIWYQDGYEQPSDED 1167
Query: 160 QAPIV----NAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 215
I A + + F Q T++ + +V+FAK LP F ++ DQI LLK
Sbjct: 1168 LKRITQTWQQADDENEESDTPFRQITEMTILTVQLIVEFAKGLPGFAKISQPDQITLLKA 1347
Query: 216 CCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDD 275
C E+M LR A RYD S+++ A TR + G+ V + + + S LD+
Sbjct: 1348 CSSEVMMLRVARRYDAASDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMALDN 1527
Query: 276 TEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAH---FWPKLLMK 332
ALL AV++ SDRPGL + +E+ Q +L YI + A + K+L
Sbjct: 1528 IHYALLTAVVIF-SDRPGLEQPQLVEEIQRYYLNTLRIYILNQLSGSARSSVIYGKILSI 1704
Query: 333 VTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
+++LR +G +++ + +K++ PP E+++
Sbjct: 1705 LSELRTLGMQNSNMCISLKLK--NRKLPPFLEEIWD 1806
>gb|AF325360.1|AF325360 Calliphora vicina ecdysone receptor (EcR) mRNA, complete cds
Length = 2355
Score = 171 bits (433), Expect = 1e-40
Identities = 116/374 (31%), Positives = 178/374 (47%), Gaps = 31/374 (8%)
Frame = +1
Query: 11 KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQ 70
++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D R +CQ
Sbjct: 934 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYCCKFGHACEMDMYMRRKCQ 1107
Query: 71 ECRFKKCIFVGMATDLVLDDS------KRLAXXXXXXXXXXXXXXXXLQKTI-------- 116
ECR +KC+ VGM + V+ ++ + ++K I
Sbjct: 1108 ECRLRKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKIQTSVCATEIKKEILDLMTCEP 1287
Query: 117 -GHKPEPTDEEWELIKIVTEAHVATNAQGSH----------WKQKRKFLPEDIGQAPIVN 165
H P E I+ + S+ W Q P + I++
Sbjct: 1288 PSHPTCPLLPE----DILAKCQARNIPPSSYNQLAVIYKLIWYQDGYEQPSEEDLKRIMS 1455
Query: 166 APEGGKVDLE-AFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLR 224
+P+ + + +F T+I + +V+FAK LP F ++P EDQI LLK C E+M LR
Sbjct: 1456 SPDENESQHDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLR 1635
Query: 225 AAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAV 284
A RYD S+++ + TR K G+ + + + S +D+ E ALL A+
Sbjct: 1636 MARRYDHNSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMYSMKVDNVEYALLTAI 1815
Query: 285 LLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAH-----FWPKLLMKVTDLRMI 339
++ SDRPGL E +E Q ++ YI R H F+ KLL +T+LR +
Sbjct: 1816 VIF-SDRPGLEEAELVEAIQSYYIDTLRIYILNR--HCGDPMSLVFFAKLLSILTELRTL 1986
Query: 340 GACHASRFLHMKVE 353
G +A +K++
Sbjct: 1987 GNQNAEMCFSLKLK 2028
>gb|U15547.1|MMBTTHR6 Mus musculus beta 2 thyroid hormone receptor (TRbeta2) gene, exon 6
Length = 502
Score = 171 bits (432), Expect = 1e-40
Identities = 88/98 (89%), Positives = 91/98 (92%), Gaps = 7/98 (7%)
Frame = +3
Query: 199 PMFC-------ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKN 251
P+FC +LPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEMAVTRGQLKN
Sbjct: 162 PLFCAYVPRSFQLPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKN 341
Query: 252 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 289
GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS
Sbjct: 342 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 455
>gb|AC093927.2| Homo sapiens chromosome 3 clone RP11-81I24, complete sequence
Length = 183263
Score = 169 bits (429), Expect = 3e-40
Identities = 86/87 (98%), Positives = 87/87 (99%)
Frame = +2
Query: 203 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIF 262
+LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIF
Sbjct: 171989 QLPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIF 172168
Query: 263 DLGMSLSSFNLDDTEVALLQAVLLMSS 289
DLGMSLSSFNLDDTEVALLQAVLLMSS
Sbjct: 172169 DLGMSLSSFNLDDTEVALLQAVLLMSS 172249
Score = 166 bits (420), Expect = 3e-39
Identities = 76/84 (90%), Positives = 78/84 (92%)
Frame = +2
Query: 286 LMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHAS 345
L +DRPGL CVERIEK Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHAS
Sbjct: 176615 LFPADRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHAS 176794
Query: 346 RFLHMKVECPTELFPPLFLEVFED 369
RFLHMKVECPTELFPPLFLEVFED
Sbjct: 176795 RFLHMKVECPTELFPPLFLEVFED 176866
Score = 108 bits (269), Expect = 1e-21
Identities = 47/49 (95%), Positives = 49/49 (99%)
Frame = +2
Query: 37 GFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATD 85
GFFRRTIQKNLHP+YSCKYEGKCVIDKVTRNQCQECRFKKCI+VGMATD
Sbjct: 152900 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATD 153046
Score = 101 bits (251), Expect = 1e-19
Identities = 50/69 (72%), Positives = 52/69 (74%)
Frame = +3
Query: 86 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGS 145
+VLDDSKRLA LQK+IGHKPEPTDEEWELIK VTEAHVATNAQGS
Sbjct: 156015 VVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 156194
Query: 146 HWKQKRKFL 154
HWKQKRKFL
Sbjct: 156195 HWKQKRKFL 156221
Score = 100 bits (249), Expect = 2e-19
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = +1
Query: 155 PEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCEL 204
PEDIGQAPIVNAPEGGKVDLEAFS FTKIITPAITRVVDFAKKLPMFCE+
Sbjct: 166273 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEV 166422
Score = 82.8 bits (203), Expect = 4e-14
Identities = 34/35 (97%), Positives = 35/35 (99%)
Frame = +3
Query: 2 SGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 36
+GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK
Sbjct: 147228 TGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 147332
>gb|AF210733.1|AF210733 Aedes albopictus ecdysteroid receptor (EcR) mRNA, complete cds
Length = 4130
Score = 168 bits (426), Expect = 6e-40
Identities = 117/380 (30%), Positives = 180/380 (46%), Gaps = 32/380 (8%)
Frame = +3
Query: 6 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVT 65
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 2061 PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYCCKFGHACEMDMYM 2234
Query: 66 RNQCQECRFKKCIFVGMATDLVLDDSK---------------RLAXXXXXXXXXXXXXXX 110
R +CQECR KKC+ VGM + V+ +++ ++
Sbjct: 2235 RRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSE 2414
Query: 111 XL----------QKTIGHKPEPTDEEWEL--IKIVTEAHVATNAQGSHWKQKRKFLP--E 156
L + I PE +E L I ++T +A W Q P E
Sbjct: 2415 ILPILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAV-IYKLIWYQDGYEQPSEE 2591
Query: 157 DIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 216
D+ + I + E F T+I + +V+FAK LP F ++P EDQI LLK C
Sbjct: 2592 DLKRIMIGSPNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKAC 2771
Query: 217 CMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 276
E+M LR A RYD ++++ + TR + G+ + + + S +D+
Sbjct: 2772 SSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFCRQMFSLTVDNV 2951
Query: 277 EVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYR---KHHVAHFWPKLLMKV 333
E ALL A+++ SDRPGL E +E Q ++ YI R + + KLL +
Sbjct: 2952 EYALLTAIVIF-SDRPGLEQAELVEHIQSYYIDTLRIYILNRHAGDPKCSVIFAKLLSIL 3128
Query: 334 TDLRMIGACHASRFLHMKVE 353
T+LR +G ++ +K++
Sbjct: 3129 TELRTLGNQNSEMCFSLKLK 3188
>gb|U15548.1|MMBTTHR7 Mus musculus beta 2 thyroid hormone receptor (TRbeta2) gene, exon 7
and complete cds
Length = 379
Score = 168 bits (425), Expect = 8e-40
Identities = 77/89 (86%), Positives = 80/89 (89%)
Frame = +3
Query: 281 LQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIG 340
+Q + SDRPGL CVERIEK Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIG
Sbjct: 3 IQIPFFLPSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIG 182
Query: 341 ACHASRFLHMKVECPTELFPPLFLEVFED 369
ACHASRFLHMKVECPTELFPPLFLEVFED
Sbjct: 183 ACHASRFLHMKVECPTELFPPLFLEVFED 269
>gb|M95194.1|RANTHYHOR Rana catesbeiana thyroid hormone receptor beta gene, 3' end
Length = 1261
Score = 166 bits (421), Expect = 2e-39
Identities = 77/80 (96%), Positives = 78/80 (97%)
Frame = +1
Query: 290 DRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLH 349
DRPGL VERIEKCQEGFLLAFEHYINYRKH+VAHFWPKLLMKVTDLRMIGACHASRFLH
Sbjct: 706 DRPGLSSVERIEKCQEGFLLAFEHYINYRKHNVAHFWPKLLMKVTDLRMIGACHASRFLH 885
Query: 350 MKVECPTELFPPLFLEVFED 369
MKVECPTELFPPLFLEVFED
Sbjct: 886 MKVECPTELFPPLFLEVFED 945
>gb|U02021.1|AAU02021 Aedes aegypti ecdysteroid receptor mRNA, complete cds
Length = 4158
Score = 166 bits (421), Expect = 2e-39
Identities = 116/380 (30%), Positives = 179/380 (46%), Gaps = 32/380 (8%)
Frame = +3
Query: 6 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVT 65
P+ ++ELC+VCGD+ +GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 2058 PTPRQQEELCLVCGDRESGYHYNALTCEGCKGFFRRSVTKN--AVYCCKFGHACEMDMYM 2231
Query: 66 RNQCQECRFKKCIFVGMATDLVLDDSK---------------RLAXXXXXXXXXXXXXXX 110
R +CQECR KKC+ VGM + V+ +++ ++
Sbjct: 2232 RRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSE 2411
Query: 111 XL----------QKTIGHKPEPTDEEWEL--IKIVTEAHVATNAQGSHWKQKRKFLP--E 156
L + I PE +E L I ++T +A W Q P E
Sbjct: 2412 ILPILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAV-IYKLIWYQDGYEQPSEE 2588
Query: 157 DIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 216
D+ + I + E F T+I + +V+FAK LP F ++P EDQI LLK C
Sbjct: 2589 DLKRIMIGSPNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKAC 2768
Query: 217 CMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 276
E+M LR A RYD ++++ + TR + G+ + + + S +D+
Sbjct: 2769 SSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFCRQMFSLTVDNV 2948
Query: 277 EVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYR---KHHVAHFWPKLLMKV 333
E ALL A+++ SDRPGL E +E Q ++ YI R + + KLL +
Sbjct: 2949 EYALLTAIVIF-SDRPGLEQAELVEHIQSYYIDTLRIYILNRHAGDPKCSVIFAKLLSIL 3125
Query: 334 TDLRMIGACHASRFLHMKVE 353
T+LR +G ++ +K++
Sbjct: 3126 TELRTLGNQNSEMCFSLKLK 3185
>emb|Y09009.1|HVECR H.virescens mRNA for ecdysteroid receptor
Length = 2745
Score = 166 bits (420), Expect = 3e-39
Identities = 115/397 (28%), Positives = 184/397 (45%), Gaps = 34/397 (8%)
Frame = +3
Query: 6 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVT 65
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 684 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYICKFGHACEMDIYM 857
Query: 66 RNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTI-GHKP---- 120
R +CQECR KKC+ VGM + V+ +++ T+ H P
Sbjct: 858 RRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQREKDKLPVSTTTVDDHMPPIMQ 1037
Query: 121 --EPTDEEWELIKIVTEAHV-------------------ATNAQGS-----HWKQKRKFL 154
P E +++ V V T Q S W Q+
Sbjct: 1038 CDPPPPEAARILECVQHEVVPRFLNEKLMEQNRLKNVPPLTANQKSLIARLVWYQEGYEQ 1217
Query: 155 PEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 214
P + + + E + F Q T++ + +V+FAK LP F ++ DQI LLK
Sbjct: 1218 PSEEDLKRVTQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLK 1397
Query: 215 GCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLD 274
C E+M LR A RYD ++++ A TR + G+ V + + + S +D
Sbjct: 1398 ACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMD 1577
Query: 275 DTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYI---NYRKHHVAHFWPKLLM 331
+ ALL A+++ SDRPGL +E+ Q +L YI N A + ++L
Sbjct: 1578 NVHYALLTAIVIF-SDRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRGAVIFGEILG 1754
Query: 332 KVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
+T++R +G +++ + +K++ PP E+++
Sbjct: 1755 ILTEIRTLGMQNSNMCISLKLK--NRKLPPFLEEIWD 1859
>gb|U19812.1|MSU19812 Manduca sexta ecdysone receptor homologue (MsEcR) gene, complete cds
Length = 2840
Score = 166 bits (419), Expect = 4e-39
Identities = 116/397 (29%), Positives = 186/397 (46%), Gaps = 34/397 (8%)
Frame = +1
Query: 6 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVT 65
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 772 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYICKFGHACEMDMYM 945
Query: 66 RNQCQECRFKKCIFVGMATDLVLDDS--------KRLAXXXXXXXXXXXXXXXXLQKTIG 117
R +CQECR KKC+ VGM + V+ +S K + +
Sbjct: 946 RRKCQECRLKKCLAVGMRPECVVPESTCKNKRREKEAQREKDKLPVSTTTVDDHMPAIMQ 1125
Query: 118 HKPEPTDE----------------EWELIKIVT--EAHVATNAQGSHWKQKRKFLPED-- 157
P P + E +K VT A+ + W Q+ P +
Sbjct: 1126 CDPPPPEAARIHEVVPRFLTEKLMEQNRLKNVTPLSANQKSLIARLVWYQEGYEQPSEED 1305
Query: 158 ---IGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 214
+ Q + E + D+ F Q T++ + +V+FAK LP F ++ DQI LLK
Sbjct: 1306 LKRVTQTWQLEEEEEEETDM-PFRQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLK 1482
Query: 215 GCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLD 274
E+M LR A RYD ++++ A TR + G+ V + + + S ++D
Sbjct: 1483 ASSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMSYVIEDLLHFCRCMYSMSMD 1662
Query: 275 DTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYI---NYRKHHVAHFWPKLLM 331
+ ALL A+++ SDRPGL +E+ Q +L YI + A + K+L
Sbjct: 1663 NVHYALLTAIVIF-SDRPGLEQPLLVEEIQRYYLKTLRVYILNQHSASPRCAVLFGKILG 1839
Query: 332 KVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 368
+T+LR +G +++ + +K++ PP E+++
Sbjct: 1840 VLTELRTLGTQNSNMCISLKLK--NRKLPPFLEEIWD 1944
>ref|NM_005123.1| Homo sapiens nuclear receptor subfamily 1, group H, member 4 (NR1H4),
mRNA
Length = 2218
Score = 165 bits (417), Expect = 7e-39
Identities = 116/371 (31%), Positives = 173/371 (46%), Gaps = 14/371 (3%)
Frame = +3
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 723 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 896
Query: 72 CRFKKCIFVGMATDLVLDD----SKRL---------AXXXXXXXXXXXXXXXXLQKTIGH 118
CR +KC +GM + +L + SKRL K+
Sbjct: 897 CRLRKCKEMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKSCRE 1076
Query: 119 KPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 178
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 1077 KTELTPDQQTLLHFIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENFL 1208
Query: 179 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 238
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 1209 ILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP---- 1376
Query: 239 NGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCV 297
+G + +++N G+ +F S+ + E ALL A++++S DR +
Sbjct: 1377 SGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDR 1556
Query: 298 ERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTE 357
E +EK QE L + + + LL ++T+LR HA + +V
Sbjct: 1557 EAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVN--DH 1730
Query: 358 LFPPLFLEVFE 368
F PL E+++
Sbjct: 1731 KFTPLLCEIWD 1763
>gb|U68233.1|HSU68233 Human farnesol receptor HRR-1 (HRR-1) mRNA, complete cds
Length = 2218
Score = 165 bits (417), Expect = 7e-39
Identities = 116/371 (31%), Positives = 173/371 (46%), Gaps = 14/371 (3%)
Frame = +3
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 723 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 896
Query: 72 CRFKKCIFVGMATDLVLDD----SKRL---------AXXXXXXXXXXXXXXXXLQKTIGH 118
CR +KC +GM + +L + SKRL K+
Sbjct: 897 CRLRKCKEMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKSCRE 1076
Query: 119 KPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 178
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 1077 KTELTPDQQTLLHFIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENFL 1208
Query: 179 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 238
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 1209 ILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP---- 1376
Query: 239 NGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCV 297
+G + +++N G+ +F S+ + E ALL A++++S DR +
Sbjct: 1377 SGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDR 1556
Query: 298 ERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTE 357
E +EK QE L + + + LL ++T+LR HA + +V
Sbjct: 1557 EAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVN--DH 1730
Query: 358 LFPPLFLEVFE 368
F PL E+++
Sbjct: 1731 KFTPLLCEIWD 1763
>emb|AJ002940.1|RNAJ2940 Rattus norvegicus mRNA for retinoic acid receptor alpha1, partial
Length = 908
Score = 162 bits (409), Expect = 6e-38
Identities = 93/254 (36%), Positives = 137/254 (53%), Gaps = 6/254 (2%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 211 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 384
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 385 QKCFEVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEVGE 507
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 508 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 657
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 658 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 837
Query: 249 LKNGGLGVVSDAIF 262
+ N G G ++D +F
Sbjct: 838 MHNAGFGPLTDLVF 879
>emb|AJ002941.1|RNAJ2941 Rattus norvegicus mRNA for retinoic acid receptor alpha2, partial
Length = 924
Score = 162 bits (409), Expect = 6e-38
Identities = 93/254 (36%), Positives = 137/254 (53%), Gaps = 6/254 (2%)
Frame = +2
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 227 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 400
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP------TDEEWE 128
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 401 QKCFEVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEVGE 523
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
LI+ V +AH T Q K+ + + + +D++ + +F+++ T I
Sbjct: 524 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 673
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 674 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 853
Query: 249 LKNGGLGVVSDAIF 262
+ N G G ++D +F
Sbjct: 854 MHNAGFGPLTDLVF 895
>emb|AJ009937.1|HSAJ9937 Homo sapiens mRNA for nuclear hormone receptor PRR2
Length = 4337
Score = 162 bits (409), Expect = 6e-38
Identities = 112/366 (30%), Positives = 174/366 (46%), Gaps = 11/366 (3%)
Frame = +1
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY-EGKCVIDKVTRNQCQE 71
++C VCGDKATGYH+ +TCEGCKGFFRR +++N C + +G C I + TR QCQ
Sbjct: 1954 QICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNAR--LRCPFRKGACEITRKTRRQCQA 2127
Query: 72 CRFKKCIFVGMATDLVLDD---SKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWE 128
CR +KC+ GM ++++ D +R A +Q T+E+
Sbjct: 2128 CRLRKCLESGMKNEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGL-------TEEQRM 2286
Query: 129 LIKIVTEAHVAT-NAQGSHWKQKRKFLPEDIGQAPIVN----APEGGKVDLEAFSQFTKI 183
+I+ + +A + T + SH+K R L + N A GGK +
Sbjct: 2287 MIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADM 2466
Query: 184 ITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMA 243
T ++ FAK + F +LP EDQI LLKG E+ LR ++ E+ T G ++
Sbjct: 2467 STYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC-GRLS 2643
Query: 244 VTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKC 303
G ++ + + L L + E L+QA+ L S DRPG++ +++
Sbjct: 2644 YCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQL 2823
Query: 304 QEGFLLAFEHYINYRKHHVAH--FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
QE F + + YI + AH + K++ +T+LR I A H R L ++ P P
Sbjct: 2824 QEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP--FATP 2997
Query: 362 LFLEVF 367
L E+F
Sbjct: 2998 LMQELF 3015
>ref|NM_033013.1| Homo sapiens nuclear receptor subfamily 1, group I, member 2 (NR1I2),
transcript variant 3, mRNA
Length = 4335
Score = 161 bits (408), Expect = 8e-38
Identities = 112/366 (30%), Positives = 174/366 (46%), Gaps = 11/366 (3%)
Frame = +1
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY-EGKCVIDKVTRNQCQE 71
++C VCGDKATGYH+ +TCEGCKGFFRR +++N C + +G C I + TR QCQ
Sbjct: 1954 QICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNAR--LRCPFRKGACEITRKTRRQCQA 2127
Query: 72 CRFKKCIFVGMATDLVLDD---SKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWE 128
CR +KC+ GM ++++ D +R A +Q T+E+
Sbjct: 2128 CRLRKCLESGMKKEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGL-------TEEQRM 2286
Query: 129 LIKIVTEAHVAT-NAQGSHWKQKRKFLPEDIGQAPIVN----APEGGKVDLEAFSQFTKI 183
+I+ + +A + T + SH+K R L + N A GGK +
Sbjct: 2287 MIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADM 2466
Query: 184 ITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMA 243
T ++ FAK + F +LP EDQI LLKG E+ LR ++ E+ T G ++
Sbjct: 2467 STYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC-GRLS 2643
Query: 244 VTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKC 303
G ++ + + L L + E L+QA+ L S DRPG++ +++
Sbjct: 2644 YCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQL 2823
Query: 304 QEGFLLAFEHYINYRKHHVAH--FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 361
QE F + + YI + AH + K++ +T+LR I A H R L ++ P P
Sbjct: 2824 QEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP--FATP 2997
Query: 362 LFLEVF 367
L E+F
Sbjct: 2998 LMQELF 3015
>gb|AF092946.1|AF092946 Metapenaeus ensis nuclear hormone receptor E75 (E75) mRNA, complete
cds
Length = 3538
Score = 161 bits (408), Expect = 8e-38
Identities = 108/351 (30%), Positives = 172/351 (48%), Gaps = 12/351 (3%)
Frame = +2
Query: 14 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECR 73
LC VCGDKA+G+HY +CEGCKGFFRR+IQ+ + C +C I ++ RN+CQ CR
Sbjct: 467 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYR-PCTKNQQCSILRINRNRCQYCR 643
Query: 74 FKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIV 133
KKCI VGM+ D V ++ + + E ++ + +
Sbjct: 644 LKKCIAVGMSRDAVRFGRVPKREKAKILAAMQSVNAKSQERAVLAELE---DDTRVTAAI 814
Query: 134 TEAHVAT----NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKV-----DLEAFSQFTKII 184
AH+ T + + Q+ + P P + P + E F++ +
Sbjct: 815 IRAHMDTCDFTRDKVAPMLQQARTHPSYTQCPPYLACPLNPRPVPLHGQQELVQDFSEAL 994
Query: 185 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESET-LTLNGEMA 243
PAI VV+FAK+LP F +LP EDQ+ LLK E++ +R A +D + L LNG++
Sbjct: 995 LPAIRGVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLLVRLAGMFDARTNAMLCLNGQLV 1174
Query: 244 VTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKC 303
+ + D++FD ++S L+D E+AL AV++++ DRPGL E +E+
Sbjct: 1175RREALHTSVNARFLMDSMFDFAERVNSLALNDAELALFCAVVVLAPDRPGLRNAELVERV 1354
Query: 304 QEGFLLAFEHYINYRKHHV--AHFWPKLLMKVTDLRMIGACHASRFLHMKV 352
+ + ++ KHH + LL K+ DLR + H+ + L K+
Sbjct: 1355HRRLVNCLQAVVS--KHHPENPNLQRDLLSKIPDLRTLNTLHSEKLLKYKM 1501
>gb|AF047893.1|SSTHRB2 Salmo salar thyroid hormone receptor-beta (TR-beta) gene, exon 5
Length = 259
Score = 160 bits (406), Expect = 1e-37
Identities = 80/86 (93%), Positives = 85/86 (98%)
Frame = +1
Query: 204 LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFD 263
LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFD
Sbjct: 1 LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFD 180
Query: 264 LGMSLSSFNLDDTEVALLQAVLLMSS 289
LG+SLSSF+LDD+EVALLQ V+L+SS
Sbjct: 181 LGLSLSSFHLDDSEVALLQTVILLSS 258
>gb|BC015261.1|BC015261 Mus musculus, nuclear receptor subfamily 1, group H, member 4,
clone MGC:18424 IMAGE:4241705, mRNA, complete cds
Length = 1717
Score = 160 bits (405), Expect = 2e-37
Identities = 118/373 (31%), Positives = 173/373 (45%), Gaps = 16/373 (4%)
Frame = +2
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 416 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 589
Query: 72 CRFKKCIFVGMATDLVLDD----SKRL----------AXXXXXXXXXXXXXXXXLQKTIG 117
CR +KC +GM + +L + SKRL K
Sbjct: 590 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDDSEGRDLRQVTSTTKFCR 769
Query: 118 HKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF 177
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 770 EKTELTADQQTLLDYIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENF 901
Query: 178 SQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLT 237
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 902 LILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA-- 1075
Query: 238 LNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVC 296
G + +++ G+ +F S+ + E ALL A++++S DR +
Sbjct: 1076--GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKD 1249
Query: 297 VERIEKCQEGFLLAFEHYIN-YRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECP 355
E +EK QE L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1250REAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRVN-- 1420
Query: 356 TELFPPLFLEVFE 368
F PL E+++
Sbjct: 1421DHKFTPLLCEIWD 1459
>gb|AF384555.1|AF384555 Homo sapiens farnesol receptor (NR1H4) mRNA, complete cds,
alternatively spliced
Length = 1431
Score = 160 bits (405), Expect = 2e-37
Identities = 115/375 (30%), Positives = 171/375 (44%), Gaps = 18/375 (4%)
Frame = +1
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 370 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNA--VYKCKNGGNCVMDMYMRRKCQE 543
Query: 72 CRFKKCIFVGMATDLVLDD--------SKRLAXXXXXXXXXXXXXXX---------XLQK 114
CR +KC +GM + + SKRL K
Sbjct: 544 CRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTK 723
Query: 115 TIGHKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDL 174
+ K E T ++ L+ + +++ N Q + K L E+
Sbjct: 724 SCREKTELTPDQQTLLHFIMDSY---NKQRMPQEITNKILKEEFSAE------------- 855
Query: 175 EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 234
E F T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 856 ENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP 1035
Query: 235 TLTLNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 293
+G + +++N G+ +F S+ + E ALL A++++S DR
Sbjct: 1036----SGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQY 1203
Query: 294 LVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVE 353
+ E +EK QE L + + + LL ++T+LR HA + +V
Sbjct: 1204IKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVN 1383
Query: 354 CPTELFPPLFLEVFE 368
F PL E+++
Sbjct: 1384--DHKFTPLLCEIWD 1422
>ref|NM_009108.1| Mus musculus nuclear receptor subfamily 1, group H, member 4
(Nr1h4), mRNA
Length = 1798
Score = 160 bits (405), Expect = 2e-37
Identities = 118/373 (31%), Positives = 173/373 (45%), Gaps = 16/373 (4%)
Frame = +3
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 414 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 587
Query: 72 CRFKKCIFVGMATDLVLDD----SKRL----------AXXXXXXXXXXXXXXXXLQKTIG 117
CR +KC +GM + +L + SKRL K
Sbjct: 588 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDDSEGRDLRQVTSTTKFCR 767
Query: 118 HKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF 177
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 768 EKTELTADQQTLLDYIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENF 899
Query: 178 SQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLT 237
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 900 LILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA-- 1073
Query: 238 LNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVC 296
G + +++ G+ +F S+ + E ALL A++++S DR +
Sbjct: 1074--GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKD 1247
Query: 297 VERIEKCQEGFLLAFEHYIN-YRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECP 355
E +EK QE L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1248REAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRVN-- 1418
Query: 356 TELFPPLFLEVFE 368
F PL E+++
Sbjct: 1419DHKFTPLLCEIWD 1457
>gb|U09416.1|MMU09416 Mus musculus retinoid X receptor interacting protein (RIP14-1No.6)
mRNA, complete cds
Length = 1798
Score = 160 bits (405), Expect = 2e-37
Identities = 118/373 (31%), Positives = 173/373 (45%), Gaps = 16/373 (4%)
Frame = +3
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 414 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 587
Query: 72 CRFKKCIFVGMATDLVLDD----SKRL----------AXXXXXXXXXXXXXXXXLQKTIG 117
CR +KC +GM + +L + SKRL K
Sbjct: 588 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDDSEGRDLRQVTSTTKFCR 767
Query: 118 HKPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF 177
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 768 EKTELTADQQTLLDYIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENF 899
Query: 178 SQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLT 237
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 900 LILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA-- 1073
Query: 238 LNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVC 296
G + +++ G+ +F S+ + E ALL A++++S DR +
Sbjct: 1074--GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKD 1247
Query: 297 VERIEKCQEGFLLAFEHYIN-YRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECP 355
E +EK QE L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1248REAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRVN-- 1418
Query: 356 TELFPPLFLEVFE 368
F PL E+++
Sbjct: 1419DHKFTPLLCEIWD 1457
>ref|XM_042458.2| Homo sapiens nuclear receptor subfamily 1, group I, member 3
(NR1I3), mRNA
Length = 1342
Score = 159 bits (402), Expect = 4e-37
Identities = 114/350 (32%), Positives = 165/350 (46%), Gaps = 9/350 (2%)
Frame = +2
Query: 11 KDEL--CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQ 68
+DEL CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K++ PT C + G C + K R
Sbjct: 182 EDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPT--CPFAGSCEVSKTQRRH 355
Query: 69 CQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWE 128
C CR +KC+ GM D++L L K E+ E
Sbjct: 356 CPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSK----------EQEE 505
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPED---IGQAPIVN-APEGGKVDLEAFSQFTKII 184
LI+ + AH T G+ ++Q +F P I P+ AP L + F I
Sbjct: 506 LIRTLLGAH--TRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPV-----LPLVTHFADIN 664
Query: 185 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV 244
T + +V+ F K LP+F LP EDQI LLKG +EI + + +++ L G +
Sbjct: 665 TFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNF-LCGPLRY 841
Query: 245 TRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKC 303
T G V + +F +L L + E LL A+ L S DRPG+ + I++
Sbjct: 842 TIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQL 1021
Query: 304 QEGFLLAFEHYI--NYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMK 351
QE L + YI R+ + KLL + +LR I + + H++
Sbjct: 1022QEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ 1171
>ref|NM_005122.1| Homo sapiens nuclear receptor subfamily 1, group I, member 3
(NR1I3), mRNA
Length = 1450
Score = 159 bits (402), Expect = 4e-37
Identities = 114/350 (32%), Positives = 165/350 (46%), Gaps = 9/350 (2%)
Frame = +3
Query: 11 KDEL--CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQ 68
+DEL CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K++ PT C + G C + K R
Sbjct: 285 EDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPT--CPFAGSCEVSKTQRRH 458
Query: 69 CQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWE 128
C CR +KC+ GM D++L L K E+ E
Sbjct: 459 CPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSK----------EQEE 608
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPED---IGQAPIVN-APEGGKVDLEAFSQFTKII 184
LI+ + AH T G+ ++Q +F P I P+ AP L + F I
Sbjct: 609 LIRTLLGAH--TRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPV-----LPLVTHFADIN 767
Query: 185 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV 244
T + +V+ F K LP+F LP EDQI LLKG +EI + + +++ L G +
Sbjct: 768 TFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNF-LCGPLRY 944
Query: 245 TRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKC 303
T G V + +F +L L + E LL A+ L S DRPG+ + I++
Sbjct: 945 TIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQL 1124
Query: 304 QEGFLLAFEHYI--NYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMK 351
QE L + YI R+ + KLL + +LR I + + H++
Sbjct: 1125QEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ 1274
>emb|Z30425.1|HSONHORE H.sapiens mRNA for orphan nuclear hormone receptor
Length = 1450
Score = 159 bits (402), Expect = 4e-37
Identities = 114/350 (32%), Positives = 165/350 (46%), Gaps = 9/350 (2%)
Frame = +3
Query: 11 KDEL--CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQ 68
+DEL CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K++ PT C + G C + K R
Sbjct: 285 EDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPT--CPFAGSCEVSKTQRRH 458
Query: 69 CQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWE 128
C CR +KC+ GM D++L L K E+ E
Sbjct: 459 CPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSK----------EQEE 608
Query: 129 LIKIVTEAHVATNAQGSHWKQKRKFLPED---IGQAPIVN-APEGGKVDLEAFSQFTKII 184
LI+ + AH T G+ ++Q +F P I P+ AP L + F I
Sbjct: 609 LIRTLLGAH--TRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPV-----LPLVTHFADIN 767
Query: 185 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV 244
T + +V+ F K LP+F LP EDQI LLKG +EI + + +++ L G +
Sbjct: 768 TFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNF-LCGPLRY 944
Query: 245 TRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKC 303
T G V + +F +L L + E LL A+ L S DRPG+ + I++
Sbjct: 945 TIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQL 1124
Query: 304 QEGFLLAFEHYI--NYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMK 351
QE L + YI R+ + KLL + +LR I + + H++
Sbjct: 1125QEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ 1274
>emb|AL590145.2|AL590145 Zebrafish DNA sequence from clone RP71-18K17, complete sequence [Danio
rerio]
Length = 135699
Score = 157 bits (398), Expect = 1e-36
Identities = 80/87 (91%), Positives = 84/87 (95%)
Frame = +1
Query: 203 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIF 262
+LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEMAV+R QLKNGGLGVVSDAIF
Sbjct: 100048 QLPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVSREQLKNGGLGVVSDAIF 100227
Query: 263 DLGMSLSSFNLDDTEVALLQAVLLMSS 289
DLG SLS FNLDD+EVALLQAVLLMSS
Sbjct: 100228 DLGKSLSQFNLDDSEVALLQAVLLMSS 100308
Score = 157 bits (397), Expect = 1e-36
Identities = 70/81 (86%), Positives = 78/81 (95%)
Frame = +3
Query: 289 SDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFL 348
+DR GL CVE+IEKCQE +LLAFEHYIN+RKH+++HFWPKLLMKVT+LRMIGACHASRFL
Sbjct: 102312 TDRSGLTCVEKIEKCQEMYLLAFEHYINHRKHNISHFWPKLLMKVTNLRMIGACHASRFL 102491
Query: 349 HMKVECPTELFPPLFLEVFED 369
HMKVECPTELFPPLFLEVFED
Sbjct: 102492 HMKVECPTELFPPLFLEVFED 102554
Score = 96.3 bits (238), Expect = 4e-18
Identities = 44/67 (65%), Positives = 51/67 (75%), Gaps = 1/67 (1%)
Frame = +1
Query: 20 DKATGYHYRCITCEGC-KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCI 78
DK+ H C C +GFFRRTIQKNLHP+YSCKY+ C+IDK+TRNQCQ CRF+KCI
Sbjct: 89683 DKSVFNH*AAFFCLHCTQGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFRKCI 89862
Query: 79 FVGMATD 85
VGMA D
Sbjct: 89863 SVGMAMD 89883
Score = 80.9 bits (198), Expect = 2e-13
Identities = 42/80 (52%), Positives = 52/80 (64%)
Frame = +1
Query: 79 FVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHV 138
FV +A +VLDDSKR+A + KT+ ++PEPT EWELI++VTEAH
Sbjct: 92641 FVSVA--VVLDDSKRVAKRRLIEENREKRKKEEIVKTLHNRPEPTVSEWELIRMVTEAHR 92814
Query: 139 ATNAQGSHWKQKRKFLPEDI 158
TNAQG HWKQKRKFL D+
Sbjct: 92815 HTNAQGPHWKQKRKFLVSDL 92874
Score = 77.8 bits (190), Expect = 1e-12
Identities = 31/34 (91%), Positives = 33/34 (96%)
Frame = +3
Query: 3 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 36
GY+PSYL+KDE CVVCGDKATGYHYRCITCEGCK
Sbjct: 89547 GYVPSYLEKDEPCVVCGDKATGYHYRCITCEGCK 89648
Score = 76.6 bits (187), Expect = 3e-12
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = +2
Query: 153 FLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCEL 204
F PEDIGQ+P + + KVDLEAFS+FTKIITPAITRVVDFAKKLPMF E+
Sbjct: 97034 FQPEDIGQSPAPTS-DNDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEV 97186
Score = 40.4 bits (93), Expect = 0.26
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 234 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMS-SDRP 292
ETL L+ EM V+ QLKN LGVV +AIFDLG S + L+ + + A +L S D+P
Sbjct: 101287 ETLNLSREMGVS*EQLKNERLGVVFNAIFDLGKSPNQ-KLEVVQNLMELATMLFSVQDKP 101463
>emb|X75163.1|XLRNAONST X.laevis mRNA for orphan nuclear receptor of steroid/thyroid
superfamily
Length = 1638
Score = 157 bits (397), Expect = 1e-36
Identities = 105/365 (28%), Positives = 164/365 (44%), Gaps = 10/365 (2%)
Frame = +2
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
++C CGD+ATGYH+ +TCEGCKGFFRR +++NL SC ++ CVI+K R CQ C
Sbjct: 347 KICRACGDRATGYHFNAMTCEGCKGFFRRAVKRNLR--LSCPFQNSCVINKSNRRHCQAC 520
Query: 73 RFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKI 132
R KKC+ +GM +L++ D+ +K K PT L
Sbjct: 521 RLKKCLDIGMRKELIMSDA-----------AVEQRRALIKRKHKLTKLPPTPPGASLTP- 664
Query: 133 VTEAHVATNAQGSHWKQ-------KRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIIT 185
+ H T G+H K + F P P + ++T
Sbjct: 665 -EQQHFLTQLVGAHTKTFDFNFTFSKNFRPIRRSSDPTQEPQATSSEAFLMLPHISDLVT 841
Query: 186 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVT 245
I ++ FAK LP F L EDQI LLKG E+ +R ++ ++ T T
Sbjct: 842 YMIKGIISFAKMLPYFKSLDIEDQIALLKGSVAEVSVIRFNTVFNSDTNTWECGPFTYDT 1021
Query: 246 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQE 305
G + + + + + NL E A++ A+ + +SDRPG+ E+I+K QE
Sbjct: 1022EDMFLAGFRQLFLEPLVRIHRMMRKLNLQSEEYAMMAALSIFASDRPGVCDWEKIQKLQE 1201
Query: 306 GFLLAFEHYINYRKHHVAH---FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 362
L + +I+ ++ +PK++ +T+LR + H+ + L + P PL
Sbjct: 1202HIALTLKDFIDSQRPPSPQNRLLYPKIMECLTELRTVNDIHSKQLLEIWDIQPDA--TPL 1375
Query: 363 FLEVF 367
EVF
Sbjct: 1376MREVF 1390
>ref|NM_021745.1| Rattus norvegicus farnesoid X activated receptor (LOC60351), mRNA
Length = 2070
Score = 156 bits (395), Expect = 2e-36
Identities = 115/372 (30%), Positives = 173/372 (45%), Gaps = 15/372 (4%)
Frame = +1
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQ+
Sbjct: 532 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQD 705
Query: 72 CRFKKCIFVGMATDLVLDD----SKRL---------AXXXXXXXXXXXXXXXXLQKTIGH 118
CR +KC +GM + +L + SKRL K
Sbjct: 706 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKLCRE 885
Query: 119 KPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 178
K E T ++ L+ + +++ + Q + K L E+ E F
Sbjct: 886 KTELTVDQQTLLDYIMDSY---SKQRMPQEITNKILKEEFSAE-------------ENFL 1017
Query: 179 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 238
T++ T + +V+F K+LP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 1018ILTEMATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA--- 1188
Query: 239 NGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCV 297
G + +++ G+ +F S+ + E ALL A++++S DR +
Sbjct: 1189-GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDR 1365
Query: 298 ERIEKCQEGFLLAFEHYIN-YRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT 356
E +EK QE L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1366EAVEKLQEPLLDVLQKLCKIYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRVN--D 1536
Query: 357 ELFPPLFLEVFE 368
F PL E+++
Sbjct: 1537HKFTPLLCEIWD 1572
>gb|U18374.1|RNU18374 Rattus norvegicus farnesoid X activated receptor mRNA, complete cds
Length = 2070
Score = 156 bits (395), Expect = 2e-36
Identities = 115/372 (30%), Positives = 173/372 (45%), Gaps = 15/372 (4%)
Frame = +1
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQ+
Sbjct: 532 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQD 705
Query: 72 CRFKKCIFVGMATDLVLDD----SKRL---------AXXXXXXXXXXXXXXXXLQKTIGH 118
CR +KC +GM + +L + SKRL K
Sbjct: 706 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKLCRE 885
Query: 119 KPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 178
K E T ++ L+ + +++ + Q + K L E+ E F
Sbjct: 886 KTELTVDQQTLLDYIMDSY---SKQRMPQEITNKILKEEFSAE-------------ENFL 1017
Query: 179 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 238
T++ T + +V+F K+LP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 1018ILTEMATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA--- 1188
Query: 239 NGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCV 297
G + +++ G+ +F S+ + E ALL A++++S DR +
Sbjct: 1189-GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDR 1365
Query: 298 ERIEKCQEGFLLAFEHYIN-YRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT 356
E +EK QE L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1366EAVEKLQEPLLDVLQKLCKIYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRVN--D 1536
Query: 357 ELFPPLFLEVFE 368
F PL E+++
Sbjct: 1537HKFTPLLCEIWD 1572
>emb|AL590963.10|AL590963 Mouse DNA sequence from clone RP23-395E10 on chromosome 11, complete
sequence [Mus musculus]
Length = 196722
Score = 156 bits (395), Expect = 2e-36
Identities = 69/84 (82%), Positives = 79/84 (93%)
Frame = -2
Query: 286 LMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHAS 345
L+ +DR GL+CV++IEK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHAS
Sbjct: 94310 LLPADRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHAS 94131
Query: 346 RFLHMKVECPTELFPPLFLEVFED 369
RFLHMKVECPTELFPPLFLEVFED
Sbjct: 94130 RFLHMKVECPTELFPPLFLEVFED 94059
Score = 155 bits (393), Expect = 4e-36
Identities = 79/91 (86%), Positives = 85/91 (92%)
Frame = -1
Query: 199 PMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVS 258
P +LPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEMAV R QLKNGGLGVVS
Sbjct: 95061 PAVPQLPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVS 94882
Query: 259 DAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 289
DAIF+LG SLS+FNLDDTEVALLQAVLLMS+
Sbjct: 94881 DAIFELGKSLSAFNLDDTEVALLQAVLLMST 94789
Score = 95.5 bits (236), Expect = 7e-18
Identities = 42/49 (85%), Positives = 44/49 (89%)
Frame = -3
Query: 37 GFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATD 85
GFFRRTIQKNLHPTYSCKY+ CVIDK+TRNQCQ CRFKKCI VGMA D
Sbjct: 97699 GFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMD 97553
Score = 87.4 bits (215), Expect = 2e-15
Identities = 41/50 (82%), Positives = 47/50 (94%)
Frame = -2
Query: 155 PEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCEL 204
P+DIGQ+PIV+ P+G KVDLEAFS+FTKIITPAITRVVDFAKKLPMF E+
Sbjct: 95654 PDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEV 95505
Score = 81.3 bits (199), Expect = 1e-13
Identities = 34/41 (82%), Positives = 36/41 (86%)
Frame = -3
Query: 1 MSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRR 41
+ GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCK + R
Sbjct: 101659 LPGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKVWMSR 101537
Score = 75.9 bits (185), Expect = 5e-12
Identities = 35/69 (50%), Positives = 46/69 (65%)
Frame = -1
Query: 86 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGS 145
+VLDDSKR+A + +++ +PEPT EEW+LI + TEAH +TNAQGS
Sbjct: 96855 VVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTNAQGS 96676
Query: 146 HWKQKRKFL 154
HWKQ+RKFL
Sbjct: 96675 HWKQRRKFL 96649
Score = 57.4 bits (137), Expect(2) = 2e-12
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +3
Query: 36 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATD 85
+GFFRR+IQ+N+ K E C I ++ RN+CQ+CRFKKC+ VGM+ D
Sbjct: 87228 QGFFRRSIQQNIQYKRCLKNEN-CSIVRINRNRCQQCRFKKCLSVGMSRD 87374
Score = 42.4 bits (98), Expect = 0.067
Identities = 26/79 (32%), Positives = 37/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 144 GSHWKQKRKFLPEDIGQAPIVNAPEG--GKVDLEAFSQFTKIITPAITRVVDFAKKLPMF 201
G+H P P+ P G G+ E + F+ TPA+ VV+FAK +P F
Sbjct: 88639 GAHPANMSLLTPFSS*ACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGF 88818
Query: 202 CELPCEDQIILLKGCCMEI 220
+L DQ+ LLK E+
Sbjct: 88819 RDLSQHDQVTLLKAGTFEV 88875
Score = 39.7 bits (91), Expect = 0.44
Identities = 39/171 (22%), Positives = 76/171 (43%), Gaps = 15/171 (8%)
Frame = +3
Query: 211 ILLKGC--CMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSL 268
I LK C ++++ +R A ++ + +T+ + +L G+G + +A+FD L
Sbjct: 89283 ISLKKCPPSLQVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKL 89462
Query: 269 SSFNLDDTEVALLQAVLLMSSDRPGL-VCVERIEKCQEGFLLAFEHYINYRKHHVAHFWP 327
+S L + E+ L AV+L+S+ P + +E Q F + F + Y + H+
Sbjct: 89463 NSLALTEEELGLFTAVVLVSAGEPSSPLTLEEAHAVQ--FNIPFMENLLYARPSTGHWAT 89636
Query: 328 KLLMKVTDL--RMI-------GACHASRFLHMKVE---CPTELFPPLFLEV 366
++ + L R++ CH + + CP EL + L+V
Sbjct: 89637 DMIQTQSSLGNRLMPD*L*NSEKCHTRSMNQVSTDDYFCPGELGKEVTLDV 89789
Score = 39.7 bits (91), Expect(2) = 2e-12
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 14 LCVVCGDKATGYHYRCITCEGCK 36
LC VCGD A+G+HY CEGCK
Sbjct: 87070 LCKVCGDVASGFHYGVHACEGCK 87138
>dbj|AK002513.1|AK002513 Mus musculus adult male kidney cDNA, RIKEN full-length enriched
library, clone:0610010O18:nuclear receptor subfamily 1,
group H, member 4, full insert sequence
Length = 1728
Score = 156 bits (394), Expect = 3e-36
Identities = 115/373 (30%), Positives = 173/373 (45%), Gaps = 16/373 (4%)
Frame = +2
Query: 12 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQE 71
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 431 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 604
Query: 72 CRFKKCIFVGMATDLVLD--------DSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPT 123
CR +KC +GM + + SKRL + + H T
Sbjct: 605 CRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTANEDDSEGRDLRHVTSTT 784
Query: 124 DEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQ---- 179
E ++ + + + ++R +P++I K+ E FS
Sbjct: 785 KFCREKTELTADQQTLLDYIMDSYNKQR--MPQEI----------TNKILKEEFSAEENL 928
Query: 180 --FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLT 237
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 929 LILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA-- 1102
Query: 238 LNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVC 296
G + +++ G+ +F S+ + E ALL A++++S DR +
Sbjct: 1103--GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKD 1276
Query: 297 VERIEKCQEGFLLAFEHYIN-YRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECP 355
E +EK QE L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1277REAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRVN-- 1447
Query: 356 TELFPPLFLEVFE 368
F PL E+++
Sbjct: 1448DHKFTPLLCEIWD 1486
>emb|X04854.1|GGCERBA2 Chicken c-erb A gene exons 2-8
Length = 6307
Score = 156 bits (394), Expect = 3e-36
Identities = 75/109 (68%), Positives = 77/109 (69%), Gaps = 27/109 (24%)
Frame = +3
Query: 4 YIPSYLDKDELCVVCGDKATGYHYRCITCEGCK--------------------------- 36
YIPSYLDKDE CVVCGDKATGYHYRCITCEGCK
Sbjct: 4047 YIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKVRVGGLRGGGVRRDQGVSTVTPPPPPQ 4226
Query: 37 GFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATD 85
GFFRRTIQKNLHPTYSCKY+G CVIDK+TRNQCQ CRFKKCI VGMA D
Sbjct: 4227 GFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMD 4373
Score = 85.9 bits (211), Expect = 5e-15
Identities = 40/50 (80%), Positives = 46/50 (92%)
Frame = +3
Query: 155 PEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCEL 204
PEDIGQ+P+ + P+G KVDLEAFS+FTKIITPAITRVVDFAKKLPMF E+
Sbjct: 5988 PEDIGQSPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEV 6137
Score = 80.1 bits (196), Expect = 3e-13
Identities = 38/69 (55%), Positives = 47/69 (68%)
Frame = +2
Query: 86 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVTEAHVATNAQGS 145
+VLDDSKR+A + K++ H+P P+ EEWELI +VTEAH +TNAQGS
Sbjct: 4847 VVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSPSAEEWELIHVVTEAHRSTNAQGS 5026
Query: 146 HWKQKRKFL 154
HWKQKRKFL
Sbjct: 5027 HWKQKRKFL 5053
>emb|X55069.1|HSCERBA8 Human c-erbA-1 gene, exon 8 for thyroid hormone receptor alpha
Length = 951
Score = 156 bits (394), Expect = 3e-36
Identities = 79/91 (86%), Positives = 85/91 (92%)
Frame = +1
Query: 199 PMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVS 258
P +LPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEMAV R QLKNGGLGVVS
Sbjct: 643 PAAPQLPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKRAQLKNGGLGVVS 822
Query: 259 DAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 289
DAIF+LG SLS+FNLDDTEVALLQAVLLMS+
Sbjct: 823 DAIFELGKSLSAFNLDDTEVALLQAVLLMST 915
>gb|AF132752.1|OMTHRA2 Oncorhynchus mykiss thyroid hormone receptor alpha gene, exon 5
Length = 258
Score = 155 bits (391), Expect = 7e-36
Identities = 79/86 (91%), Positives = 82/86 (94%)
Frame = +1
Query: 204 LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFD 263
LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEMAV R QLKNGGLGVVSDAIFD
Sbjct: 1 LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFD 180
Query: 264 LGMSLSSFNLDDTEVALLQAVLLMSS 289
LG SL+ FNLDD+EVALLQAVLLMSS
Sbjct: 181 LGKSLAQFNLDDSEVALLQAVLLMSS 258
>emb|X55068.1|HSCERBA9 Human c-erbA-1 gene, exon 9 for thyroid hormone receptor alpha
Length = 3400
Score = 154 bits (390), Expect = 9e-36
Identities = 68/81 (83%), Positives = 77/81 (94%)
Frame = +1
Query: 289 SDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFL 348
+DR GL+CV++IEK QE +LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFL
Sbjct: 22 TDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFL 201
Query: 349 HMKVECPTELFPPLFLEVFED 369
HMKVECPTELFPPLFLEVFED
Sbjct: 202 HMKVECPTELFPPLFLEVFED 264
>gb|AF305201.1|AF305201 Xenopus laevis orphan nuclear receptor BXR-beta mRNA, complete cds
Length = 1790
Score = 154 bits (389), Expect = 1e-35
Identities = 103/358 (28%), Positives = 159/358 (43%), Gaps = 3/358 (0%)
Frame = +1
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
++C CGD+ATGYH+ +TCEGCKGFFRR +++NL SC ++ CVI+K R CQ C
Sbjct: 376 KICRACGDRATGYHFNAMTCEGCKGFFRRAMKRNLR--LSCPFQNSCVINKNNRRHCQAC 549
Query: 73 RFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKI 132
R KKC+ +GM +L++ D L T E+ I
Sbjct: 550 RLKKCLDIGMRKELIMSDE----AVEQRRALIKRKQNLSLSPPTPPGASLTPEQQHFITE 717
Query: 133 VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVV 192
+ EAH T ++ + F P P + + + T + V+
Sbjct: 718 LVEAH--TKTFDFNFTFFKNFRPIRRSPDPTQDPQATSSEAFLMLPHISDLFTYMLKGVI 891
Query: 193 DFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNG 252
FAK LP F L EDQI LLKG +E+ +R ++P++ T G
Sbjct: 892 SFAKMLPYFRSLAIEDQIALLKGSVLEVCVIRFNRMFNPKTNTWECGAFTYNADDMTMAG 1071
Query: 253 GLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFE 312
+ + + ++ NL+ AL+ + L SSDRPG+ E+I+ QE L +
Sbjct: 1072FSQQFLEPLLRIHCMMTKLNLESEAYALMATMALFSSDRPGVSDCEKIQNLQEHIALMLK 1251
Query: 313 HYINYRKHHVAH---FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 367
+I + +PK++ +T+LR I H+ + + + P PL EVF
Sbjct: 1252AFIESHRPPSPQNRLLYPKIMECLTELRTINDIHSKQLMEIWDIQPD--VTPLMREVF 1419
>gb|AF146776.2|SSTHRB3 Salmo salar thyroid hormone receptor-beta (TR-beta) gene, exon 6
and partial cds
Length = 239
Score = 154 bits (388), Expect = 2e-35
Identities = 71/79 (89%), Positives = 73/79 (91%)
Frame = +3
Query: 291 RPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHM 350
RPGL V+RIE+CQE FLLAFEHYINYRKH VA FWPKLLMKVTDLRMIGACHASRFLHM
Sbjct: 3 RPGLTSVDRIERCQEEFLLAFEHYINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHM 182
Query: 351 KVECPTELFPPLFLEVFED 369
KVECP ELFPPLFLEVFED
Sbjct: 183 KVECPNELFPPLFLEVFED 239
>gb|AF276753.1|AF276753 Gallus gallus xenobiotic receptor (CXR) mRNA, complete cds
Length = 1340
Score = 152 bits (384), Expect = 5e-35
Identities = 108/364 (29%), Positives = 178/364 (48%), Gaps = 25/364 (6%)
Frame = +3
Query: 13 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQEC 72
++C VCGD+ATGYH+ ++CEGCKGFFRR+I K +H ++C + C I K R QCQ C
Sbjct: 132 KVCAVCGDRATGYHFHVMSCEGCKGFFRRSILKGVH--FTCPFTRSCPITKAKRRQCQAC 305
Query: 73 RFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEP---TDEEWEL 129
R +KC+ VGM D+++ + LQ+ + + +P T E+ EL
Sbjct: 306 RLQKCLDVGMRKDMIMSEE-----------ALGRRRALRLQRRLA-QAQPGGLTAEQQEL 449
Query: 130 IKIVTEAHVAT----NAQGSHWKQK-RKFLPEDIGQAP----IVNAPEGGKVDL------ 174
I I+ AH T +Q H++ R +P Q+P + +A ++D
Sbjct: 450 ISILIAAHKRTFDSSFSQFQHYQPAVRLCIPGPCSQSPPGPGVPSASLSPQLDCLDEDVL 629
Query: 175 -EAFS---QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYD 230
+ FS F + T I +V+ FAK++P F LP +DQI LLKG + I ++ ++
Sbjct: 630 PDVFSILPHFADLSTFMIQQVIKFAKEIPAFRGLPIDDQISLLKGATLGICQIQFNTVFN 809
Query: 231 PESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSD 290
E+ + G + + + +SL L + E LL A+LL S D
Sbjct: 810 EETNAWECGQHCFTIKDGALAGFQQIYLEPLLKFHISLKKLRLHEAEYVLLVAMLLFSPD 989
Query: 291 RPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAH---FWPKLLMKVTDLRMIGACHASRF 347
+ + I++ QE L + YI++R H + + KLL+ +T+L+ + + +
Sbjct: 990 HASVTQRDFIDQLQEKVALTLKSYIDHR-HPMPEGRFLYAKLLLLLTELQTLKMENTRQI 1166
Query: 348 LHMK 351
LH++
Sbjct: 1167LHIQ 1178
>emb|X51548.1|DME75A Drosophila mRNA for ecdysone-inducible gene E75A
Length = 5970
Score = 152 bits (383), Expect = 6e-35
Identities = 102/347 (29%), Positives = 168/347 (48%), Gaps = 7/347 (2%)
Frame = +1
Query: 14 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECR 73
LC VCGDKA+G+HY +CEGCKGFFRR+IQ+ + C +C I ++ RN+CQ CR
Sbjct: 1420 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYR-PCTKNQQCSILRINRNRCQYCR 1596
Query: 74 FKKCIFVGMATDLV-LDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKI 132
KKCI VGM+ D V + Q+ + + D++ L+
Sbjct: 1597 LKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSTQNRGQQRALATE---LDDQPRLLAA 1767
Query: 133 VTEAHVAT----NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAI 188
V AH+ T + S +Q+ + P ++ P +L++ +F++ I
Sbjct: 1768 VLRAHLETCEFTKEKVSAMRQRARDCPS-YSMPTLLACPLNPAPELQSEQEFSQRFAHVI 1944
Query: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPE-SETLTLNGEMAVTRG 247
V+DFA +P F L +D+ LLK + + +R +D + + LNG++ + R
Sbjct: 1945 RGVIDFAGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQV-MRRD 2121
Query: 248 QLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEG 306
++NG + D+ F+ ++S NL D E+ L A++L++ DRPGL +E IEK
Sbjct: 2122 AIQNGANARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSR 2301
Query: 307 FLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVE 353
++ + + F KLL + DLR + H + + + E
Sbjct: 2302 LKGCLQYIVAQNRPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFRTE 2442
>gb|AY049026.1|AY049025S2 Rana pipiens thyroid hormone receptor beta mRNA, partial cds
Length = 249
Score = 151 bits (382), Expect = 8e-35
Identities = 69/70 (98%), Positives = 70/70 (99%)
Frame = +1
Query: 300 IEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELF 359
IEKCQEGFLLAFEHYINYRKH+VAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELF
Sbjct: 1 IEKCQEGFLLAFEHYINYRKHNVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELF 180
Query: 360 PPLFLEVFED 369
PPLFLEVFED
Sbjct: 181 PPLFLEVFED 210
>gb|AF132753.1|OMTHRA3 Oncorhynchus mykiss thyroid hormone receptor alpha gene, exon 6 and
partial cds
Length = 252
Score = 151 bits (382), Expect = 8e-35
Identities = 68/80 (85%), Positives = 74/80 (92%)
Frame = +1
Query: 290 DRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLH 349
DR GL V++IEKCQE +LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLH
Sbjct: 1 DRSGLTSVDKIEKCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLH 180
Query: 350 MKVECPTELFPPLFLEVFED 369
MKVECP ELFPPLFLEVFED
Sbjct: 181 MKVECPNELFPPLFLEVFED 240
>gb|AF290610.1|AF290610 Salmo salar retinoic acid receptor alpha (RAR-alpha) mRNA, partial
cds
Length = 838
Score = 150 bits (379), Expect = 2e-34
Identities = 96/296 (32%), Positives = 149/296 (49%), Gaps = 1/296 (0%)
Frame = +1
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC+ VGM+ + V +D + +K KPE T E + T
Sbjct: 4 QKCLEVGMSKESVRNDRNK-------------------KKKDEKKPECT----ETYTLST 114
Query: 135 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGG-KVDLEAFSQFTKIITPAITRVVD 193
E N K+ L + +G+ N+ E +D+ + +F+++ T I + V+
Sbjct: 115 ETEQMINRVSKAHKETFPSLCQ-LGKYTTSNSSERRVALDVNLWDKFSELSTKCIIKTVE 291
Query: 194 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG 253
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + R Q+ N G
Sbjct: 292 FAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTPNRTQMHNAG 471
Query: 254 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEH 313
G ++D +F L +DD E LL A+ L+ DR L ++++ QE L A +
Sbjct: 472 FGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLLEALKI 651
Query: 314 YINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 369
Y+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 652 YVRKRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 816
>dbj|AB037673.1|AB037673 Paralichthys olivaceus VDRb mRNA for vitamin D receptor b, complete
cds
Length = 2659
Score = 150 bits (378), Expect = 2e-34
Identities = 109/403 (27%), Positives = 175/403 (43%), Gaps = 50/403 (12%)
Frame = +3
Query: 14 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECR 73
+C VCGDKATG+H+ +TCEGCKGFFRR++++ T++C + G C I K R CQ CR
Sbjct: 672 ICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRK--ATFTCPFNGSCTITKDNRRHCQACR 845
Query: 74 FKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIV 133
K+C+ +GM + +L D + ++ +P TDE+ ++I ++
Sbjct: 846 LKRCVDIGMMREFILTDEEVQRKKDLIQRRKDEEAQREAERE-ARRPRLTDEQSQVIAML 1022
Query: 134 TEAH-------------------------VATNAQGSH-----WKQKRKFLPEDI----- 158
EAH A+ A H PE +
Sbjct: 1023 VEAHHKTYDDSYSDFCRFRPPVREGPVTRSASRAASLHSLSDASSDSFSHSPESVDTKVN 1202
Query: 159 -----------GQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCE 207
G +P + EG + +++ +I +V+ FAK +P F EL E
Sbjct: 1203 FNNLLMMYQEQGSSPDSSEEEGSSFSM--LPHLADLVSYSIQKVIGFAKMIPGFRELTAE 1376
Query: 208 DQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE--MAVTRGQLKNGGLGVVSDAIFDLG 265
DQI LLK +E++ LR+ ++ E + + K G + + +
Sbjct: 1377 DQIALLKSSAIEVIMLRSNQSFNLEDMSWSCGAPDFKYQISDVTKAGHTLELLEPLVKFQ 1556
Query: 266 MSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAHF 325
+ L NL + E +L A+ L+S DRPG+ RIE Q+ + YI
Sbjct: 1557 VGLKKLNLQEEEHVMLMAICLLSPDRPGVQDHARIEALQDRLSETLQAYIQLHHPGGRLL 1736
Query: 326 WPKLLMKVTDLRMIGACHASRF--LHMKVECPTELFPPLFLEV 366
+ K++ K+ DLR + H+ ++ L + E +L PL LEV
Sbjct: 1737 YAKMIQKLADLRSLNEEHSKQYRSLSFRPEHSMQL-TPLVLEV 1862
>ref|NM_009803.1| Mus musculus nuclear receptor subfamily 1, group I, member 3
(Nr1i3), mRNA
Length = 1350
Score = 149 bits (375), Expect = 5e-34
Identities = 102/335 (30%), Positives = 155/335 (45%), Gaps = 5/335 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K + P C + G+C + K R C CR
Sbjct: 208 CVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGPI--CPFAGRCEVSKAQRRHCPACRL 381
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC+ VGM D++L S LQ ++ EL++I+
Sbjct: 382 QKCLNVGMRKDMIL--SAEALALRRARQAQRRAEKASLQL--------NQQQKELVQILL 531
Query: 135 EAHVATNAQGSHWKQKRKFLPED---IGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRV 191
AH T G + Q +F P + P P G + L + F I T + ++
Sbjct: 532 GAH--TRHVGPLFDQFVQFKPPAYLFMHHRPF--QPRGPVLPL--LTHFADINTFMVQQI 693
Query: 192 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKN 251
+ F K LP+F L EDQI LLKG +EI+ + + ++E +
Sbjct: 694 IKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKMEDAVHA 873
Query: 252 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAF 311
G ++I +L +L + E L+ A L S DRPG+ E I++ QE L
Sbjct: 874 GFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMALIL 1053
Query: 312 EHYINYRKHHV--AHFWPKLLMKVTDLRMIGACHA 344
++I ++ + + KL+ + DLR I ++
Sbjct: 1054NNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYS 1158
>gb|AF009327.1|AF009327 Mus musculus orphan nuclear hormone receptor isoform mCAR1 mRNA,
complete cds
Length = 1350
Score = 149 bits (375), Expect = 5e-34
Identities = 102/335 (30%), Positives = 155/335 (45%), Gaps = 5/335 (1%)
Frame = +1
Query: 15 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRF 74
CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K + P C + G+C + K R C CR
Sbjct: 208 CVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGPI--CPFAGRCEVSKAQRRHCPACRL 381
Query: 75 KKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIVT 134
+KC+ VGM D++L S LQ ++ EL++I+
Sbjct: 382 QKCLNVGMRKDMIL--SAEALALRRARQAQRRAEKASLQL--------NQQQKELVQILL 531
Query: 135 EAHVATNAQGSHWKQKRKFLPED---IGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRV 191
AH T G + Q +F P + P P G + L + F I T + ++
Sbjct: 532 GAH--TRHVGPLFDQFVQFKPPAYLFMHHRPF--QPRGPVLPL--LTHFADINTFMVQQI 693
Query: 192 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKN 251
+ F K LP+F L EDQI LLKG +EI+ + + ++E +
Sbjct: 694 IKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKMEDAVHA 873
Query: 252 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAF 311
G ++I +L +L + E L+ A L S DRPG+ E I++ QE L
Sbjct: 874 GFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMALIL 1053
Query: 312 EHYINYRKHHV--AHFWPKLLMKVTDLRMIGACHA 344
++I ++ + + KL+ + DLR I ++
Sbjct: 1054NNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYS 1158
>gb|AF164512.1|AF164512 Danio rerio vitamin D receptor (vdr) mRNA, complete cds
Length = 1503
Score = 148 bits (373), Expect = 9e-34
Identities = 106/404 (26%), Positives = 172/404 (42%), Gaps = 50/404 (12%)
Frame = +1
Query: 14 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECR 73
+C VCGDKATG+H+ +TCEGCKGFFRR++++ +++C + G C I K R CQ CR
Sbjct: 187 ICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRK--ASFTCPFNGNCTITKDNRRHCQACR 360
Query: 74 FKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPTDEEWELIKIV 133
K+CI +GM + +L D + KP +DE+ ++I +
Sbjct: 361 LKRCIDIGMMKEFILTDEEVQRKKDLIMKRKEEEAARE-----ARKPRLSDEQMQIINSL 525
Query: 134 TEAHVATNAQGSHWKQKRKFLPEDIGQAPIV----------------------------- 164
EAH T + +F P + + P+
Sbjct: 526 VEAHHKT--YDDSYSDFVRFRP-PVREGPVTRSASRAASLHSLSDASSDSFNHSPESVDT 696
Query: 165 --------------NAPEGGKVD----LEAFSQFTKIITPAITRVVDFAKKLPMFCELPC 206
+P+ + D L +++ +I +V+ FAK +P F +L
Sbjct: 697 KLNFSNLLMMYQDSGSPDSSEEDQQSRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTA 876
Query: 207 EDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE--MAVTRGQLKNGGLGVVSDAIFDL 264
EDQI LLK +EI+ LR+ + E + + G K G + + +
Sbjct: 877 EDQIALLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKF 1056
Query: 265 GMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYRKHHVAH 324
+ L L + E LL A+ L+S DRPG+ RIE Q+ + YI +
Sbjct: 1057QVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRL 1236
Query: 325 FWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL-FPPLFLEVF 367
+ K++ K+ DLR + H+ ++ + + + PL LEVF
Sbjct: 1237LYAKMIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVF 1368
>dbj|AB037674.1|AB037674 Paralichthys olivaceus VDRa mRNA for vitamin D receptor a, complete
cds
Length = 2429
Score = 147 bits (371), Expect = 1e-33
Identities = 110/410 (26%), Positives = 180/410 (43%), Gaps = 48/410 (11%)
Frame = +2
Query: 6 PSYLDKD--ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDK 63
P D++ +C VCGDKATG+H+ +TCEGCKGFFRR++++ +++C + G C I K
Sbjct: 305 PDEFDRNAPRICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRK--ASFTCPFNGSCTITK 478
Query: 64 VTRNQCQECRFKKCIFVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKTIGHKPEPT 123
R CQ CR K+CI +GM + +L D + +P
Sbjct: 479 DNRRHCQACRLKRCIDIGMMKEFILTDEEVQREKEMILKRKEEEAAREAM-----RPRLN 643
Query: 124 DEEWELIKIVTEAHVAT-NAQGSHWKQKRKFLPE-----------------DIGQAPIVN 165
+E+ +I + EAH T +A S + + R + E D +
Sbjct: 644 EEQARMISSLVEAHHKTYDASYSDFSRFRPPVREGPVTRSASRAASLHSLSDASSDSFNH 823
Query: 166 APEG----------------GKVDLEAFSQFTK---------IITPAITRVVDFAKKLPM 200
+PE G ++ + TK +++ +I +V+ FAK +P
Sbjct: 824 SPESVDTKMNFSNLLMMYQDGASSPDSSEENTKLSMLPHLADLVSYSIQKVIGFAKMIPG 1003
Query: 201 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE--MAVTRGQLKNGGLGVVS 258
F +L EDQI LLK +EI+ LR+ + E + + G K G +
Sbjct: 1004FRDLTAEDQIALLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELL 1183
Query: 259 DAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEKCQEGFLLAFEHYINYR 318
+ + + L NL + E LL + L+S DRPG+ R+E+ Q+ A + YI
Sbjct: 1184EPLVKFQVGLKKLNLHEEEHVLLMGICLLSPDRPGVQDHARVEQLQDRLPEALQAYIRIN 1363
Query: 319 KHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL-FPPLFLEVF 367
+ K++ K+ DLR + H+ ++ + + + PL LEVF
Sbjct: 1364HPGGRLLYAKMIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVF 1513
>gb|AF242868.1|AF242868 Synthetic construct ECFP-retinoic acid receptor ligand binding domain
fusion protein mRNA, complete cds
Length = 1