TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(394 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,171,752 sequences; 566,364,212 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB026496.1|AB026496 Gallus gallus mRNA for paired-box c... 783 0.0
emb|Y10119.1|XLHDPA4 Xenopus laevis mRNA for paired box pro... 746 0.0
ref|NM_000278.1| Homo sapiens paired box gene 2 (PAX2), tra... 745 0.0
gb|M89470.1|HUMPAX2A Human paired-box protein (PAX2) mRNA, ... 745 0.0
ref|NM_003987.1| Homo sapiens paired box gene 2 (PAX2), tra... 732 0.0
ref|NM_003988.1| Homo sapiens paired box gene 2 (PAX2), tra... 730 0.0
emb|Y10121.1|XLHDPA10 Xenopus laevis mRNA for paired box pr... 729 0.0
gb|L25597.1|HUMPBXPROA Homo sapiens paired box protein mRNA... 650 0.0
ref|NM_003990.1| Homo sapiens paired box gene 2 (PAX2), tra... 713 0.0
emb|X55781.1|MMPAX2 M.musculus pax2 gene 712 0.0
ref|NM_003989.1| Homo sapiens paired box gene 2 (PAX2), tra... 700 0.0
gb|AF067541.1|AF067541 Danio rerio paired box protein pax2.... 697 0.0
gb|AF067531.1|AF067531 Danio rerio paired box protein pax2.... 696 0.0
emb|X63961.1|BRPAXZFB B.rerio pax[zf-b] mRNA 696 0.0
emb|Y07617.1|MMPAX21NE M.musculus pax2-1Neu gene 688 0.0
gb|AF067534.1|AF067534 Danio rerio paired box protein pax2.... 685 0.0
gb|AF067530.1|AF067530 Danio rerio paired box protein Pax2.... 684 0.0
emb|Y10123.1|XLPBS32 Xenopus laevis mRNA for paired box pro... 674 0.0
gb|AF072547.1|AF072547 Danio rerio transcription factor (Pa... 672 0.0
emb|Y10120.1|XLHDPA7 Xenopus laevis mRNA for paired box pro... 667 0.0
gb|AF067538.1|AF067538 Danio rerio paired box protein pax2.... 651 0.0
gb|AF067539.1|AF067539 Danio rerio paired box protein pax2.... 650 0.0
emb|AJ000666.1|XLAJ666 Xenopus laevis mRNA for paired box p... 648 0.0
emb|Y10122.1|XLPBS4 Xenopus laevis mRNA for paired box prot... 647 0.0
gb|AF067537.1|AF067537 Danio rerio paired box protein pax2.... 639 0.0
gb|AF067540.1|AF067540 Danio rerio paired box protein pax2.... 638 0.0
gb|AF067532.1|AF067532 Danio rerio paired box protein pax2.... 624 e-177
gb|AF067536.1|AF067536 Danio rerio paired box protein pax2.... 622 e-176
gb|AF067533.1|AF067533 Danio rerio paired box protein pax2.... 619 e-175
emb|Z97020.1|OLZ97020 Oryzias latipes mRNA for PAX2 protein 605 e-171
gb|AF179300.1|AF179300 Xenopus laevis Pax-2 protein (Pax-2)... 601 e-170
emb|AJ010503.1|XLA010503 Xenopus laevis mRNA for paired box... 559 e-157
gb|M96944.1|HUMBSAP Human B-cell specific transcription fac... 547 e-154
ref|NM_016734.1| Homo sapiens paired box gene 5 (B-cell lin... 547 e-154
dbj|AB004249.1|AB004249 Gallus gallus Pax-5 mRNA, complete cds 546 e-154
ref|NM_008782.1| Mus musculus paired box gene 5 (Pax5), mRNA 546 e-153
gb|M97013.1|MUSBSAP Mouse B-cell specific transcription fac... 546 e-153
ref|NM_013951.1| Homo sapiens paired box gene 8 (PAX8), tra... 493 e-137
gb|AF072548.1|AF072548 Danio rerio transcription factor (Pa... 439 e-121
ref|NM_003466.1| Homo sapiens paired box gene 8 (PAX8), tra... 439 e-121
gb|L19606.1|HUMPAX8A Human paired box homeotic protein (PAX... 439 e-121
gb|BC001060.1|BC001060 Homo sapiens, paired box gene 8, clo... 439 e-121
emb|X69699.1|HSPAX8A H.sapiens Pax8 mRNA 436 e-120
ref|XM_096020.1| Homo sapiens paired box gene 2 (PAX2), mRNA 434 e-120
ref|XM_071372.1| Homo sapiens paired box gene 2 (PAX2), mRNA 434 e-120
gb|AF411466.1|AF411466 Petromyzon marinus transcription fac... 426 e-117
ref|NM_011040.1| Mus musculus paired box gene 8 (Pax8), mRNA 401 e-110
emb|X57487.1|MMPAX8 M.musculus mRNA Pax8 401 e-110
gb|BC020526.1|BC020526 Mus musculus, paired box gene 8, clo... 401 e-110
emb|X83591.1|CCPAX8A C.canis Pax8a mRNA 395 e-108
emb|AJ000667.1|XLAJ667 Xenopus laevis mRNA for paired box p... 391 e-107
ref|NM_031141.1| Rattus norvegicus Pax-8 protein (Pax8), mRNA 387 e-106
emb|X94246.1|RNPAX8 R.norvegicus mRNA for Pax-8 protein 387 e-106
emb|AJ000668.1|XLAJ668 Xenopus laevis mRNA for paired box p... 371 e-101
ref|NM_013952.1| Homo sapiens paired box gene 8 (PAX8), tra... 369 e-100
gb|S77904.1|S77904 Pax (PAX8c)=paired box {alternatively sp... 369 e-100
gb|AF179301.1|AF179301 Xenopus laevis Pax-8 DNA-binding tra... 369 e-100
gb|AF067535.1|AF067535 Danio rerio paired box protein pax2.... 365 4e-99
gb|AF053762.1|AF053762 Branchiostoma floridae paired box pr... 361 6e-98
emb|X83592.1|CCPAX8G C.canis Pax8g mRNA 356 2e-96
ref|NM_013953.1| Homo sapiens paired box gene 8 (PAX8), tra... 342 3e-92
gb|S77905.1|S77905 Pax (PAX8d)=paired box {alternatively sp... 342 3e-92
gb|AF072549.1|AF072549 Danio rerio transcription factor (Pa... 342 5e-92
ref|NM_013992.1| Homo sapiens paired box gene 8 (PAX8), tra... 340 1e-91
gb|S77906.2|S77906 Pax (PAX8e)=paired box {alternatively sp... 340 1e-91
emb|AJ000669.1|XLAJ669 Xenopus laevis mRNA for paired box p... 324 1e-86
gb|AF053763.1|AF053763 Branchiostoma floridae paired box pr... 310 2e-82
gb|AF016884.1|AF016884 Paracentrotus lividus paired box pro... 285 7e-75
gb|AF241310.1|AF241310 Acropora millepora transcription fac... 257 1e-66
dbj|AB006675.1|AB006675 Halocynthia roretzi HrPax-258 mRNA,... 242 4e-62
emb|AJ251932.1|PMA251932 Phallusia mammillata mRNA for tran... 239 4e-61
gb|AF016888.1|AF016888 Drosophila melanogaster paired box p... 238 9e-61
ref|NM_013001.1| Rattus norvegicus Paired box homeotic gene... 236 3e-60
gb|U69644.1|RNU69644 Rattus norvegicus Pax-6 mRNA, comlete cds 236 3e-60
gb|AF061252.1|AF061252 Danio rerio Pax-family transcription... 235 3e-60
ref|NM_000280.1| Homo sapiens paired box gene 6 (aniridia, ... 233 2e-59
gb|M93650.1|HUMPAX6AN Human paired box gene (PAX6) homologu... 233 2e-59
gb|BC011953.1|BC011953 Homo sapiens, Similar to paired box ... 233 2e-59
gb|AY047583.1| Homo sapiens paired box protein PAX6 (PAX6) ... 233 2e-59
gb|M77844.1|HUMOCLHMB H.sapiens oculorhombin (aniridia) mRN... 233 2e-59
emb|X61389.1|BRPAXZFA B.rerio mRNA for Pax[zf-a] 233 2e-59
ref|NM_079894.1| Drosophila melanogaster shaven (sv), mRNA 233 2e-59
gb|AF010256.1|AF010256 Drosophila melanogaster sparkling pr... 233 2e-59
emb|X70475.1|CCPAX C. coturnix mRNA for paired box and home... 233 2e-59
emb|Y07548.1|AFPAX6E24 Astyanax fasciatus mRNA for PAX-6 pr... 232 5e-59
gb|AF154557.1|AF154557 Xenopus laevis paired domain transcr... 232 5e-59
gb|AF154555.1|AF154555 Xenopus laevis paired domain transcr... 232 5e-59
gb|AF154556.1|AF154556 Xenopus laevis paired domain transcr... 232 5e-59
emb|Y07546.1|AFPAX6C23 Astyanax fasciatus mRNA for PAX-6 pr... 232 5e-59
gb|AF154552.1|AF154552 Xenopus laevis paired domain transcr... 231 9e-59
gb|AF169415.1|AF169415 Ambystoma mexicanum paired-box trans... 231 9e-59
gb|AF169414.1|AF169414 Ambystoma mexicanum paired-box trans... 231 9e-59
emb|AJ249563.1|PCA249563 Podocoryne carnea mRNA for paired ... 231 9e-59
gb|U77532.1|XLU77532 Xenopus laevis Pax6 mRNA, complete cds 230 2e-58
gb|AF154553.1|AF154553 Xenopus laevis paired domain transcr... 230 2e-58
gb|U76386.1|XLU76386 Xenopus laevis paired-type homeodomain... 230 2e-58
gb|U64513.1|XLU64513 Xenopus laevis Xpax6 mRNA, complete cds 229 3e-58
dbj|D88737.1|D88737 African clawed frog mRNA for Xenopus Pa... 229 3e-58
dbj|D88738.1|D88738 African clawed frog mRNA for Xenopus Pa... 229 3e-58
dbj|AB061220.1|AB061220 Lampetra japonica mRNA for paired b... 229 3e-58
gb|AF165886.1|AF165886 Branchiostoma floridae paired-box tr... 227 1e-57
emb|AJ223440.1|BFL223440 Branchiostoma floridae Pax6 gene (... 226 2e-57
emb|AJ223443.1|BFL223443 Branchiostoma floridae Pax6 gene (... 226 4e-57
gb|U14621.1|PLU14621 Paracentrotus lividus Pax-6 (suPax-6) ... 226 4e-57
ref|NM_013627.1| Mus musculus paired box gene 6 (Pax6), mRNA 225 6e-57
emb|X63963.1|MMPAX6PBP M.musculus pax-6 mRNA for paired box... 225 6e-57
emb|Y19193.1|MMUY19193 Mus musculus partial Pax-6 gene for ... 225 6e-57
gb|U59830.1|LOU59830 Loligo opalescens Pax-6 mRNA, complete... 225 6e-57
gb|BC011272.1|BC011272 Mus musculus, clone MGC:18454 IMAGE:... 225 6e-57
emb|Y19198.1|MMUY19198 Mus musculus partial Pax-6 gene for ... 225 6e-57
emb|Y19196.1|MMUY19196 Mus musculus partial Pax-6 gene for ... 225 6e-57
gb|U96197.1|CQU96197 Chrysaora quinquecirrha Pax-B (Pax-B) ... 224 8e-57
emb|Y19199.1|MMUY19199 Mus musculus partial Pax-6 gene for ... 224 8e-57
ref|NM_001604.2| Homo sapiens paired box gene 6 (aniridia, ... 224 1e-56
emb|X63183.1|BRPAX6 B.rerio pax-6 mRNA 224 1e-56
ref|NM_077357.1| 'Paired box' domain, homeobox protein (pai... 223 2e-56
gb|U31537.1|CEU31537 Caenorhabditis elegans variable abnorm... 223 2e-56
dbj|D87837.1|D87837 Gallus gallus mRNA for PAX6 protein, co... 223 2e-56
gb|U96194.1|HLU96194 Hydra littoralis Pax-B mRNA, complete cds 223 2e-56
emb|Y07547.1|AFPAX6C72 Astyanax fasciatus mRNA for PAX-6 pr... 223 3e-56
emb|AJ307468.1|MMU307468 Mus musculus mRNA for paired box p... 223 3e-56
dbj|D88741.1|D88741 Cynops pyrrhogaster mRNA for PAX6 LL, P... 223 3e-56
gb|U67887.1|XLU67887 Xenopus laevis XLPAX6 (Pax6) mRNA, com... 222 4e-56
gb|AF169412.1|AF169412 Ambystoma mexicanum paired-box trans... 221 7e-56
gb|AF169413.1|AF169413 Ambystoma mexicanum paired-box trans... 221 7e-56
emb|Y19197.1|MMUY19197 Mus musculus partial Pax-6 gene for ... 221 7e-56
gb|AF260127.1|AF260127 Cladonema californicum transcription... 221 9e-56
gb|BC008826.1|BC008826 Homo sapiens, paired box gene 3 (Waa... 221 9e-56
gb|AF260128.1|AF260128 Cladonema californicum transcription... 221 9e-56
emb|AJ251933.1|PMA251933 Phallusia mammillata mRNA for tran... 220 2e-55
gb|AF154554.1|AF154554 Xenopus laevis paired domain transcr... 220 2e-55
emb|AJ223442.1|BFL223442 Branchiostoma floridae Pax6 gene (... 220 2e-55
emb|X95594.1|LSPAX6GEN L.sanguineus pax6 gene 219 3e-55
ref|NM_079899.1| Drosophila melanogaster twin of eyeless (t... 219 4e-55
gb|AF134350.1|AF134350 Drosophila melanogaster transcriptio... 219 4e-55
gb|AY051487.1| Drosophila melanogaster GH14454 full length ... 219 4e-55
emb|Y09975.1|PMPAX6 P.mammillata mRNA for Pax-6 218 6e-55
dbj|AB007462.1|AB007462 Ephydatia fluviatilis mRNA for Pax-... 218 6e-55
dbj|AK012493.1|AK012493 Mus musculus 11 days embryo whole b... 218 6e-55
gb|AF254422.2|AF254422 Mus musculus paired box transcriptio... 218 6e-55
gb|AF411465.1|AF411465 Petromyzon marinus transcription fac... 218 8e-55
emb|AJ223444.1|BFL223444 Branchiostoma floridae Pax6 gene (... 218 8e-55
gb|U02368.1|HSU02368 Human PAX3/forkhead transcription fact... 216 2e-54
ref|NM_008781.1| Mus musculus paired box gene 3 (Pax3), mRNA 216 2e-54
emb|X59358.1|MMPAX3R Mouse Pax-3 gene for a DNA binding pro... 216 2e-54
gb|AF000673.1|AF000673 Coturnix coturnix paired-box transcr... 216 2e-54
gb|AF178854.1|AF178854 Synthetic construct Pax3-forkhead fu... 216 2e-54
dbj|AK014337.1|AK014337 Mus musculus 14, 17 days embryo hea... 216 2e-54
gb|AF014366.1|AF014366 Danio rerio transcription factor PAX... 216 3e-54
ref|NM_013945.1| Homo sapiens paired box gene 7 (PAX7), tra... 216 3e-54
dbj|D87838.1|D87838 Gallus gallus mRNA for PAX7 protein, co... 215 5e-54
gb|AE003466.1|AE003466 Drosophila melanogaster genomic scaf... 214 1e-53
gb|AC007582.7| Drosophila melanogaster, chromosome 2R, regi... 214 1e-53
emb|AJ000938.1|OLJ000938 Oryzias latipes, Pax6 gene 214 1e-53
ref|NM_078832.1| Drosophila melanogaster paired (prd), mRNA 212 4e-53
gb|AY059447.1| Drosophila melanogaster GH22686 full length ... 212 4e-53
gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome ... 212 4e-53
gb|AE003634.1|AE003634 Drosophila melanogaster genomic scaf... 212 4e-53
gb|M14548.1|DROPRD D.melanogaster paired gene (prd) encodin... 212 4e-53
ref|NM_002584.1| Homo sapiens paired box gene 7 (PAX7), tra... 211 9e-53
emb|X96743.1|HSPAX7M H.sapiens mRNA for paired box containi... 211 9e-53
emb|Z35141.1|HSPAX7GE H.sapiens Pax-7 gene for transcriptio... 211 9e-53
ref|NM_079889.1| Drosophila melanogaster eyeless (ey), mRNA 209 3e-52
emb|X79493.1|DMEYEL29 D.melanogaster ey mRNA (exons 2-9) 209 3e-52
gb|AF014370.1|AF014370 Danio rerio transcription factor PAX... 209 3e-52
ref|NM_079139.1| Drosophila melanogaster gooseberry (gsb), ... 209 3e-52
gb|AF053459.2|AMPAXC1 Acropora millepora PaxC transcription... 209 3e-52
gb|AF016885.1|AF016885 Paracentrotus lividus paired box pro... 208 6e-52
gb|U20792.1|MMU20792 Mus musculus Pax7 mRNA, partial cds 207 1e-51
gb|AF016886.1|AF016886 Strongylocentrotus purpuratus paired... 207 1e-51
ref|NM_068112.1| paired box transcription factor 207 2e-51
gb|AF053458.2|AF053458 Acropora millepora transcription fac... 206 2e-51
gb|AF014369.1|AF014369 Danio rerio transcription factor PAX... 206 2e-51
gb|AF014368.1|AF014368 Danio rerio transcription factor PAX... 206 2e-51
gb|U96196.1|CQU96196 Chrysaora quinquecirrha Pax-A2 (Pax-A2... 206 3e-51
gb|U96195.1|CQU96195 Chrysaora quinquecirrha Pax-A1 (Pax-A1... 206 3e-51
emb|AJ292077.1|MMU292077 Mus musculus partial mRNA for pair... 168 3e-51
gb|AF014367.1|AF014367 Danio rerio transcription factor PAX... 206 4e-51
gb|AY071593.1| Drosophila melanogaster RE64348 full length ... 205 7e-51
gb|U96193.1|HLU96193 Hydra littoralis Pax-A mRNA, complete cds 203 3e-50
ref|NM_079552.1| Drosophila melanogaster Paired box mesoder... 202 4e-50
gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome ... 202 4e-50
gb|AE003678.2|AE003678 Drosophila melanogaster genomic scaf... 202 4e-50
emb|Y19195.1|MMUY19195 Mus musculus partial Pax-6 gene for ... 202 4e-50
dbj|AB017632.1|AB017632 Dugesia japonica mRNA for DjPax-6, ... 202 6e-50
gb|AF002702.1|AF002702 Caenorhabditis elegans PAX protein (... 201 7e-50
ref|NM_069435.1| Human paired box protein like 201 7e-50
gb|U73855.1|BTU73855 Bos taurus Pax6 mRNA, partial cds 200 2e-49
dbj|D84254.1|D84254 Halocynthia roretzi mRNA for Pax-37, co... 200 2e-49
emb|X16992.1|DMPOXMESO D.melanogaster DNA for paired domain... 199 4e-49
gb|U40932.1|DRU40932 Danio rerio transcription factor Pax9b... 199 5e-49
ref|NM_006194.1| Homo sapiens paired box gene 9 (PAX9), mRNA 199 5e-49
gb|AF443223.1|AF443223 Mus musculus PAX6 mRNA, partial cds,... 199 5e-49
gb|BC005794.1|BC005794 Mus musculus, paired box gene 9, clo... 199 5e-49
gb|BC001159.1|BC001159 Homo sapiens, paired box gene 9, clo... 199 5e-49
gb|U40931.1|DRU40931 Danio rerio transcription factor Pax9a... 199 5e-49
ref|NM_011041.1| Mus musculus paired box gene 9 (Pax9), mRNA 199 5e-49
emb|X84000.1|MMRNAPAX9 M.musculus mRNA for Pax9 199 5e-49
ref|NM_008780.1| Mus musculus paired box gene 1 (Pax1), mRNA 198 6e-49
gb|M69222.1|MUSPAX1A Mouse Pax-1 protein (Pax-1) mRNA, comp... 198 6e-49
gb|U20167.1|BFU20167 Branchiostoma floridae paired box tran... 197 1e-48
ref|NM_006192.1| Homo sapiens paired box gene 1 (PAX1), mRNA 197 2e-48
dbj|AB039660.1|AB039660 Lampetra japonica Pax-9 mRNA for pa... 196 2e-48
emb|AL035562.14|HS1065O2 Human DNA sequence from clone RP5-... 196 3e-48
gb|AC087416.16|AC087416 Mus musculus clone rp23-224l16 stra... 196 3e-48
emb|AJ133503.1|MMU133503 Mus musculus pax1 gene, exons 1 an... 196 3e-48
gb|AF285175.1|AF285175 Mus musculus PAX1 gene, complete cds 196 3e-48
emb|X15044.1|HSHUP48 Homo sapiens HuP48 gene paired domain 196 3e-48
gb|BC006930.1|BC006930 Mus musculus, paired box gene 9, clo... 196 4e-48
emb|AJ238381.1|HSA238381 Homo sapiens pax9 gene, exons 1-2 ... 195 5e-48
gb|L09745.1|HUMPAX9 Homo sapiens paired-box containing (PAX... 195 5e-48
emb|X92652.1|CHPAX9 G.domesticus mRNA for ChPax9 protein 195 5e-48
gb|M20978.1|MUSHBPAXA Mouse Pax 1 homeo box DNA region, par... 195 5e-48
emb|X82443.1|GGPAX9 Gallus gallus Pax-9 gene 195 5e-48
emb|AL079303.3|CNS00M8O Human chromosome 14 DNA sequence BA... 195 5e-48
dbj|AB020763.1|AB020763 Ptychodera flava mRNA for Pax19, co... 195 5e-48
dbj|AB020762.1|AB020762 Ciona intestinalis mRNA for Pax19, ... 195 7e-48
emb|AJ223441.1|BFL223441 Branchiostoma floridae Pax6 gene (... 195 7e-48
gb|U22046.1|GGU22046 Gallus gallus Pax-1 (GPX-1) gene, part... 195 7e-48
gb|AF039402.1|AF039402 Gallus gallus paired box protein (Pa... 194 1e-47
emb|AJ238974.1|BLA238974 Branchiostoma lanceolatum partial ... 194 1e-47
ref|NM_013942.1| Homo sapiens paired box gene 3 (Waardenbur... 194 1e-47
gb|S69370.1|S69370 PAX3B=transcription factor {alternativel... 194 1e-47
ref|NM_000438.2| Homo sapiens paired box gene 3 (Waardenbur... 194 1e-47
gb|S69369.1|S69369 PAX3A=transcription factor [human, adult... 194 1e-47
dbj|AB021141.1|AB021141 Halocynthia roretzi Pax19 related m... 193 2e-47
gb|AF266754.1|AF266754S1 Takifugu rubripes Pax9 (pax9) gene... 193 2e-47
dbj|AB021139.1|AB021139 Halocynthia roretzi Pax19 related m... 193 2e-47
emb|AJ010498.1|GTI010498 Girardia tigrina mRNA for DtPax-6 ... 193 2e-47
dbj|AB021142.1|AB021142 Halocynthia roretzi Pax19 related m... 193 2e-47
dbj|AB021140.1|AB021140 Halocynthia roretzi Pax19 related m... 193 2e-47
dbj|AB021143.1|AB021143 Halocynthia roretzi Pax19 related m... 193 2e-47
dbj|AB021138.1|AB021138 Halocynthia roretzi Pax19 related m... 193 2e-47
emb|AJ311310.1|DJA311310 Dugesia japonica partial mRNA for ... 192 4e-47
dbj|AB007461.1|AB007461 Hydra magnipapillata mRNA for Pax-2... 191 1e-46
emb|X92850.1|HSRNAPAX9 H.sapiens mRNA for Pax9 protein 190 2e-46
gb|M86927.1|DROPOXNUP Fruitfly pox neuro protein (pox neuro... 184 9e-45
emb|X58917.1|DMPOXNEUO D.melanogaster DNA fragment for pair... 184 9e-45
ref|NM_057338.1| Drosophila melanogaster Paired box neural ... 182 4e-44
gb|AF080573.1|AF080573 Homo sapiens B-cell specific transcr... 182 5e-44
gb|AF241311.1|AF241311 Acropora millepora transcription fac... 178 7e-43
gb|M14944.1|DROPRD91 D.melanogaster paired mRNA clone BSH9,... 177 2e-42
ref|NM_072719.1| DNA-binding transcription factor 174 2e-41
gb|AF104231.1|AF104231 Mus musculus paired-homeodomain tran... 172 6e-41
ref|NM_031799.1| Rattus norvegicus paired box gene 4 (Pax4)... 171 8e-41
gb|AF053100.1|AF053100 Rattus norvegicus Pax4a mRNA, comple... 171 8e-41
gb|AF053102.1|AF053102 Rattus norvegicus Pax4c mRNA, comple... 171 8e-41
dbj|AB007460.1|AB007460 Hydra magnipapillata mRNA for pox n... 171 8e-41
dbj|AB010557.1|AB010557 Mus musculus mRNA for Pax4, complet... 171 1e-40
dbj|AB008912.1|AB008912 Mus musculus mRNA for Pax-4, comple... 171 1e-40
gb|M14943.1|DROPRD42 D.melanogaster paired mRNA clone BSH4,... 171 1e-40
gb|AF198155.1|AF198155 Rattus norvegicus Pax4a mRNA, comple... 171 1e-40
gb|AF031150.1|AF031150 Mus musculus paired-box transcriptio... 171 1e-40
dbj|AB010558.1|AB010558 Mus musculus mRNA for Pax4, complet... 171 1e-40
gb|AF145233.1|AF145233 Mus musculus transcription factor PA... 171 1e-40
gb|AF198156.1|AF198156 Rattus norvegicus Pax4c mRNA, comple... 171 1e-40
ref|NM_006193.1| Homo sapiens paired box gene 4 (PAX4), mRNA 170 2e-40
gb|AF043978.1|AF043978 Homo sapiens paired-box transcriptio... 170 2e-40
gb|AF053101.1|AF053101 Rattus norvegicus Pax4b mRNA, comple... 169 3e-40
gb|AF053103.1|AF053103 Rattus norvegicus Pax4d mRNA, comple... 169 3e-40
dbj|AB008913.1|AB008913 Homo sapiens mRNA for Pax-4, comple... 166 3e-39
gb|M77842.1|MUSSEYA Mus musculus oculorhombin (Sey) mRNA, c... 161 8e-38
gb|AY040535.1| Schistocerca americana pairberry 1 transcrip... 160 2e-37
gb|AF118835.1|AF118835 Ilyanassa obsoleta Pax2/5/8 protein ... 160 2e-37
gb|AY040536.1| Schistocerca americana pairberry 2 transcrip... 159 4e-37
gb|U53336.1| Caenorhabditis elegans cosmid K07C11, complete... 119 4e-37
ref|XM_004974.3| Homo sapiens paired box gene 4 (PAX4), mRNA 154 1e-35
ref|NM_063788.1| 'Paired box' domain, homeobox protein (pai... 150 2e-34
emb|AJ323210.1|HSA323210 Homo sapiens genomic sequence surr... 150 2e-34
gb|AF029168.1|AF029168 Ateles paniscus chamek paired box ho... 149 6e-34
gb|AF231946.1|AF231946 Haliotis asinina transcription facto... 149 6e-34
gb|AF072556.1|AF072556 Fugu rubripes transcription factor (... 135 2e-33
emb|X82442.1|GGPAX1 G.gallus Pax-1 gene 144 2e-32
emb|X73037.1|MMPAX9 M.musculus Pax-9 gene 143 2e-32
gb|AF433640.1| Takifugu rubripes Pax2.1 protein gene, exons... 140 3e-31
gb|AF433638.1| Mus musculus Pax2 protein gene, exons 1 and ... 139 3e-31
gb|L09747.1|HUMPAX203 Homo sapiens paired-box protein (PAX2... 139 3e-31
gb|U45247.1|HSPAXTWO03 Human paired-box protein PAX2 (PAX2)... 139 3e-31
emb|AL161781.12|AL161781 Human DNA sequence from clone RP11... 139 4e-31
gb|AF118836.1|AF118836 Ilyanassa obsoleta Pax6 protein mRNA... 135 8e-30
gb|AC016683.7|AC016683 Homo sapiens BAC clone RP11-65I12 fr... 134 2e-29
emb|X99594.1|MMPAX84 M.musculus Pax-8 gene, exon 4 134 2e-29
gb|AF072550.1|FRPAX1 Fugu rubripes transcription factor (Pa... 132 5e-29
emb|Y09584.1|MMPAX4GEN M.musculus Pax-4 mRNA, partial 132 7e-29
gb|AF016882.1|AF016882 Paracentrotus lividus transcription ... 132 7e-29
emb|AJ010504.1|XLA010504 Xenopus laevis mRNA for paired box... 131 1e-28
ref|NM_079317.1| Drosophila melanogaster twin of eyg (toe),... 130 2e-28
emb|Z83307.1|HSA1280 Human DNA sequence from cosmid A1280, ... 129 5e-28
gb|AC084043.4|AC084043 Mus musculus 1 BAC RP23-265D16 (Rosw... 127 1e-27
gb|AF179634.1|AF179634 Equus caballus paired box homeotic g... 127 2e-27
gb|AC010980.8| Homo sapiens BAC clone RP11-384O8 from 2, co... 127 2e-27
emb|X15043.1|HSHUP2A Human HuP2 gene paired domain exon (an... 127 2e-27
emb|AL021531.1|FR151J19 Fugu rubripes cosmid 151J19 coverin... 126 3e-27
gb|AF016887.1|AF016887 Paracentrotus lividus paired box pro... 126 3e-27
emb|X15042.1|HSHUP1A H.sapiens PAX7 gene, exon 2 126 4e-27
emb|AL021528.1|HS394P21 Homo sapiens DNA sequence from clon... 126 4e-27
ref|NM_079318.1| Drosophila melanogaster eyegone (eyg), mRNA 125 5e-27
gb|AF091739.1|AF091739 Drosophila melanogaster Eyegone (eyg... 125 5e-27
gb|AY069177.1| Drosophila melanogaster GH22493 full length ... 125 9e-27
gb|U59628.1|HSU59628 Human PAX-9 mRNA, partial cds 124 1e-26
gb|AF231947.1|AF231947 Haliotis asinina pax-6 mRNA, partial... 123 3e-26
gb|AY028904.1| Girardia tigrina Pax6A mRNA, partial cds 121 1e-25
gb|U45246.1|HSPAXTWO02 Human paired-box protein PAX2 (PAX2)... 120 2e-25
gb|AE003846.2|AE003846 Drosophila melanogaster genomic scaf... 119 6e-25
gb|AC010577.4| Drosophila melanogaster, chromosome 4, regio... 119 6e-25
gb|L09746.1|HUMPAX202 Homo sapiens paired-box protein (PAX2... 118 8e-25
gb|AF189154.1|AF189154 Herdmania curvata paired box protein... 116 4e-24
gb|U45251.1|HSPAXTWO07 Human paired-box protein PAX2 (PAX2)... 115 9e-24
emb|AL138762.20|AL138762 Human DNA sequence from clone RP11... 115 9e-24
gb|AE003809.2|AE003809 Drosophila melanogaster genomic scaf... 114 2e-23
gb|AC007579.4|AC007579 Drosophila melanogaster, chromosome ... 114 2e-23
gb|AC099024.1| Drosophila melanogaster, chromosome 2R, regi... 114 2e-23
ref|NG_000124.1| Drosophila melanogaster Paired box neural ... 114 2e-23
gb|AC007122.1|AC007122 Drosophila melanogaster, chromosome ... 114 2e-23
emb|X99593.1|MMPAX83 M.musculus Pax-8 gene, exon 3 113 3e-23
gb|S61511.1|S61511 PAX3=HuP2 {exon 2} [human, Genomic Mutan... 94 4e-21
gb|AC000359.1|HSAC000359 Human cosmid g1572c264, complete s... 103 4e-20
gb|AC073934.1|AC073934 Human Chromosome 7 clone SCb-354C16,... 103 4e-20
gb|AF142321.1|AF142321 Mus musculus transcription factor PA... 102 8e-20
gb|AC099309.1| Drosophila melanogaster, chromosome 4, regio... 101 1e-19
gb|AE003843.2|AE003843 Drosophila melanogaster genomic scaf... 101 1e-19
gb|AC010576.16| Drosophila melanogaster, chromosome 4, regi... 101 1e-19
gb|AC010838.11| Drosophila melanogaster, chromosome 4, regi... 101 1e-19
emb|Z70718.1|CEC04G2 Caenorhabditis elegans cosmid C04G2, c... 100 3e-19
dbj|AB017150.1|AB017150 Oryzias latipes Pax-3 mRNA, partial... 97 3e-18
gb|AE003541.2|AE003541 Drosophila melanogaster genomic scaf... 79 1e-17
gb|AC091223.2| Drosophila melanogaster 3L BAC RP98-48G6 (Ro... 79 1e-17
gb|AC093438.1| Drosophila melanogaster 3L BAC RP98-26C20 (R... 79 1e-17
gb|AF016883.1|AF016883 Paracentrotus lividus transcription ... 94 3e-17
emb|Z49937.1|CEF14F3 Caenorhabditis elegans cosmid F14F3, c... 86 3e-17
gb|U33755.1|NVU33755 Notophthalmus viridescens paired-box p... 89 9e-16
emb|Z48582.1|CEF27E5 Caenorhabditis elegans cosmid F27E5, c... 88 2e-15
ref|NM_075995.1| paired box protein 87 3e-15
gb|S74393.1|S74393 Pax-6 [rats, small eye rSey, mRNA Partia... 85 1e-14
gb|U45252.1|HSPAXTWO08 Human paired-box protein PAX2 (PAX2)... 85 1e-14
gb|U73622.1|XLU73622 Xenopus laevis HD1 paired box protein ... 84 2e-14
ref|NM_063715.1| 'Paired box' domain, Homeobox domain 84 3e-14
gb|U50072.1| Caenorhabditis elegans cosmid K06B9, complete ... 74 4e-14
gb|AF457142.1|AF457142 Mus musculus Pax6 protein isoform mR... 83 5e-14
gb|U45253.1|HSPAXTWO09 Human paired-box protein PAX2 (PAX2)... 82 6e-14
gb|AY038984.1| Bos taurus PAX2 (PAX2) gene, partial cds 80 2e-13
emb|AJ131630.1|DME131630 Drosophila melanogaster eyeless ge... 79 5e-13
gb|AF027769.1|AF027769 Xenopus laevis paired-box protein Pa... 74 2e-11
gb|U73621.1|BTU73621 Bos taurus paired box protein (pax-6) ... 72 7e-11
gb|AF072553.1|FRPAX4 Fugu rubripes transcription factor (Pa... 70 3e-10
gb|U45254.1|HSPAXTWO10 Human paired-box protein PAX2 (PAX2)... 70 4e-10
emb|AL450267.10|AL450267 Human DNA sequence from clone RP11... 70 4e-10
emb|X15250.1|HSHUP1B Human HuP1 gene paired domain exon 66 6e-09
gb|AF304868.1|AF304868 Mus musculus PAX4 (Pax4) gene, exons... 65 1e-08
ref|NM_011037.1| Mus musculus paired box gene 2 (Pax2), mRNA 65 1e-08
emb|X15252.1|HSHUP2B Human HuP2 gene paired domain 64 3e-08
emb|AJ329483.1|HSA329483 Homo sapiens genomic sequence surr... 64 3e-08
dbj|AK023855.1|AK023855 Homo sapiens cDNA FLJ13793 fis, clo... 64 3e-08
gb|U45248.1|HSPAXTWO04 Human paired-box protein PAX2 (PAX2)... 62 7e-08
gb|U45249.1|HSPAXTWO05 Human paired-box protein PAX2 (PAX2)... 62 9e-08
emb|X99597.1|MMPAX810 M.musculus Pax-8 gene, exon 10 59 1e-06
gb|AF098329.1|AF098329 Drosophila virilis eyeless protein g... 58 1e-06
gb|AF072554.1|FRPAX5 Fugu rubripes transcription factor (Pa... 58 2e-06
emb|X99595.1|MMPAX567 M.musculus Pax-8 gene, exons 5,6 & 7 57 4e-06
emb|Z95623.1|CEY53C12C Caenorhabditis elegans cosmid Y53C12... 55 1e-05
ref|NM_069605.1| paired box protein like 54 2e-05
ref|NM_063132.1| Paired box protein 53 5e-05
emb|X99598.1|MMPAX811 M.musculus Pax-8 gene, exons 11 & 12 50 5e-04
emb|AL160011.35|AL160011 Human DNA sequence from clone RP11... 49 6e-04
ref|NM_069139.1| 'Paired box' domain 49 8e-04
emb|Z54235.1|CEC09G9 Caenorhabditis elegans cosmid C09G9, c... 49 8e-04
gb|AF001908.1|AF001908 Danio rerio retinal homeobox protein... 45 0.011
gb|U29145.1|CEU29145 Caenorhabditis elegans (mab-18) mRNA, ... 45 0.011
gb|AF072552.1|FRPAX3 Fugu rubripes transcription factor (Pa... 44 0.033
gb|AC012591.8| Homo sapiens BAC clone RP11-296A19 from 2, c... 44 0.033
gb|U12262.1|HSPAXIII3 Human paired box homeotic protein (PA... 44 0.033
emb|Z29972.1|HSGPAX35 H.sapiens Pax-3 gene (exon 5) 44 0.033
emb|AJ299416.1|CIN299416 Ciona intestinalis mRNA for Prx1 t... 43 0.043
gb|U23518.1| Caenorhabditis elegans cosmid F21D12, complete... 43 0.043
emb|X99596.1|MMPAX89 M.musculus Pax-8 gene, exons 8 & 9 43 0.043
gb|S70305.1|S70305 Homo sapiens isolate AN015 truncated ani... 42 0.074
gb|S70304.1|S70304 PAX6=paired box and homeobox gene {trans... 42 0.074
gb|L07483.1|HUMPBH3B Homo sapiens paired-box protein (PAX3)... 42 0.074
dbj|AB002408.1|AB002408 Oryzias sp. mRNA for mdkPax-6, part... 42 0.097
dbj|AP003009.2|AP003009 Mesorhizobium loti DNA, complete ge... 42 0.097
dbj|AB006104.1|AB006104 Danio rerio mRNA for Arx homeoprote... 42 0.13
gb|AY057067.1| Ctenophorus ornatus paired box transcription... 42 0.13
gb|U02308.1|HSU02308 Human PAX-3-FKHR gene fusion mRNA, par... 41 0.16
ref|NM_077358.1| Caenorhabditis elegans 41 0.16
gb|U77178.1|TAU77178 Triturus alpestris paired box homeodom... 41 0.16
gb|U02309.1|HSU02309 Human PAX-3 mRNA, partial cds 41 0.16
gb|U29184.1|CEU29184 Caenorhabditis elegans (mab-18) mRNA, ... 41 0.22
gb|AF264703.1|AF264703 Astyanax mexicanus retinal homeobox ... 40 0.28
gb|AF054504.1|AF054504 Mus musculus membrane glycoprotein (... 40 0.28
gb|AY058293.1| Drosophila melanogaster GH05443 full length ... 40 0.28
emb|X78218.1|DMREPO D.melanogaster mRNA for reversed polarity 40 0.28
gb|S78747.1|S78747 rk2=glial-specific homeodomain protein [... 40 0.28
emb|AJ298300.1|OLA298300 Oryzias latipes mRNA for Rx3 protein 40 0.28
ref|NM_057678.1| Drosophila melanogaster reversed polarity ... 40 0.28
emb|Z97200.1|HS79C4 Homo sapiens DNA sequence from PAC 79C4... 40 0.37
gb|M14942.1|DROPRD92 D.melanogaster paired mRNA clone BSH9,... 40 0.37
gb|M14941.1|DROPRD41 D.melanogaster PRD mRNA clone BSH4, ho... 40 0.37
gb|AF457141.1|AF457141 Mus musculus Pax6 paired-less isofor... 40 0.37
ref|NM_007442.1| Mus musculus aristaless 4 (Alx4), mRNA 40 0.37
gb|AF001465.1|MMAF001465 Mus musculus paired-type homeodoma... 40 0.37
gb|AY064175.1| Mus musculus Pax6 paired-less isoform mRNA, ... 40 0.37
ref|NM_021855.1| Rattus norvegicus cone-rod homeobox protei... 40 0.48
emb|AL590369.18|AL590369 Human DNA sequence from clone RP11... 40 0.48
gb|AF135838.1|AF135838 Rattus norvegicus homeodomain protei... 40 0.48
dbj|AB021129.1|AB021129 Rattus norvegicus Crx mRNA for cone... 40 0.48
emb|AJ329522.1|HSA329522 Homo sapiens genomic sequence surr... 40 0.48
ref|XM_060970.1| Homo sapiens similar to HOMEOBOX PROTEIN D... 40 0.48
ref|XM_080599.1| homeobrain, mRNA 39 0.63
ref|NM_080164.1| Drosophila melanogaster homeobrain (hbn), ... 39 0.63
emb|AJ276705.1|DME276705 Drosophila melanogaster mRNA for h... 39 0.63
gb|BC014645.1|BC014645 Homo sapiens, Similar to paired rela... 39 0.63
ref|NM_016307.2| Homo sapiens paired related homeobox prote... 39 0.63
gb|AF061970.1|AF061970 Homo sapiens paired related homeobox... 39 0.63
ref|NM_007492.1| Mus musculus aristaless related homeobox g... 39 0.82
dbj|AB006103.1|AB006103 Mus musculus mRNA for Arx homeoprot... 39 0.82
emb|Y15515.1|HVY15515 Hydra vulgaris prdl-a gene 39 0.82
gb|AF001907.2|AF001907 Danio rerio retinal homeobox protein... 39 0.82
ref|NM_021926.1| Homo sapiens aristaless-like homeobox 4 (A... 39 1.1
gb|AF294629.1|AF294629 Homo sapiens aristaless-like 4 (ALX4... 39 1.1
gb|AF319462.1|AF319462S1 Mus musculus Rx/rax homeoprotein g... 39 1.1
gb|U73177.1|MMU73177 Mus musculus paired-type homeobox (rax... 39 1.1
gb|AF072555.1|FRPAX6 Fugu rubripes transcription factor (Pa... 39 1.1
dbj|AB015750.1|AB015750 Gallus gallus mRNA for homeobox pro... 39 1.1
ref|XM_005618.3| Homo sapiens paired related homeobox prote... 39 1.1
gb|AC007807.8|AC007807 Drosophila melanogaster, chromosome ... 39 1.1
gb|AE003716.2|AE003716 Drosophila melanogaster genomic scaf... 39 1.1
dbj|AB017633.1|AB017633 Dugesia japonica mRNA for Djrax, pa... 39 1.1
ref|NM_013833.1| Mus musculus retina and anterior neural fo... 39 1.1
gb|AF001906.1|AF001906 Mus musculus retinal homeobox protei... 39 1.1
gb|AC007824.5|AC007824 Drosophila melanogaster, chromosome ... 39 1.1
gb|BC018115.1|BC018115 Homo sapiens, TAF6 RNA polymerase II... 38 1.4
emb|Z81459.1|CEC03H12 Caenorhabditis elegans cosmid C03H12,... 38 1.4
emb|AJ223300.1|DMAJ3300 Drosophila melanogaster mRNA for ho... 38 1.4
gb|U31659.1|HSU31659 Human TBP-associated factor TAFII80 mR... 38 1.4
ref|NM_012921.1| Rattus norvegicus Cartilage homeo protein ... 38 1.4
gb|L14018.1|RATCART1X Rat cartilage homeoprotein 1 (Cart-1)... 38 1.4
ref|NM_005641.1| Homo sapiens TATA box binding protein (TBP... 38 1.4
gb|L25444.1|HUMTAFII70 Homo sapiens (TAFII70-alpha) mRNA, c... 38 1.4
gb|BC010923.1|BC010923 Homo sapiens, Similar to cartilage p... 38 1.4
gb|U15276.1|XLU15276 Xenopus laevis cartilage homeoprotein ... 38 1.4
ref|XM_098680.1| Homo sapiens similar to TAF6 RNA polymeras... 38 1.4
ref|XM_072468.1| Homo sapiens hypothetical gene supported b... 38 1.4
ref|XM_079956.1| Rx, mRNA 38 1.4
gb|AC073842.5| Homo sapiens BAC clone RP11-506M12 from 7, c... 38 1.4
ref|XM_053044.1| Homo sapiens TAF6 RNA polymerase II, TATA ... 38 1.4
gb|AF273696.1|AF273696 Bombyx mori clone BmTc1 Tc-like tran... 38 1.8
gb|AF001049.1|XLAF001049 Xenopus laevis retinal homeobox 2A... 38 1.8
gb|AF001048.1|XLAF001048 Xenopus laevis retinal homeobox 1A... 38 1.8
ref|NM_009315.1| Mus musculus TAF6 RNA polymerase II, TATA ... 38 1.8
emb|AJ279075.1|HSA279075 Homo sapiens partial ALX4 gene for... 38 1.8
emb|X74954.1|HSMUC5BB H.sapiens MUC5B mRNA (clone JER28) fo... 38 1.8
dbj|D49439.1|MUSTFIID80 Mouse mRNA for TFIID subunit p80, c... 38 1.8
gb|AF275746.1|AF275746 Bombyx mori clone BmTc2 Tc-like tran... 38 1.8
emb|AJ404888.1|HSA404888 Homo sapiens mRNA for homeodomain ... 38 1.8
dbj|AB058691.1|AB058691 Homo sapiens mRNA for KIAA1788 prot... 38 1.8
ref|XM_030752.1| Homo sapiens aristaless-like homeobox 4 (A... 38 1.8
dbj|AP001058.1|AP001058 Homo sapiens genomic DNA, chromosom... 38 1.8
gb|AF017273.1|AF017273 Xenopus laevis retinal homeobox 1 (X... 38 1.8
dbj|AP001753.1|AP001753 Homo sapiens genomic DNA, chromosom... 38 1.8
gb|AF308823.1|AF308822S2 Homo sapiens aristaless-like homeo... 38 1.8
gb|AC005737.1|AC005737 Homo sapiens chromosome 16, BAC clon... 37 2.4
gb|AC009394.4|AC009394 Drosophila melanogaster, chromosome ... 37 2.4
ref|NG_000413.1| Drosophila melanogaster reversed polarity ... 37 2.4
gb|AE003721.1|AE003721 Drosophila melanogaster genomic scaf... 37 2.4
emb|Z73426.1|CEF40F11 Caenorhabditis elegans cosmid F40F11,... 37 2.4
gb|S69508.1|S69508 Pax-6=transcription factor [chickens, em... 37 2.4
dbj|D49446.1|RATTFIIDSP Rat mRNA for TFIID subunit p80, com... 37 2.4
ref|NM_069784.1| Caenorhabditis elegans 37 2.4
gb|AF004590.1|AF004590 Helobdella triserialis Lox22-otx gen... 37 2.4
emb|X96745.1|HSPAX75 H.sapiens PAX7 gene, exon 5 37 2.4
gb|AC010525.5| Homo sapiens chromosome 19 clone LLNL-R_297C... 37 2.4
ref|NM_053624.1| Rattus norvegicus paired-like homeodomain ... 37 2.4
dbj|AB047298.1|AB047298 Rattus norvegicus mRNA for Ptx1 hom... 37 2.4
gb|AC009462.6| Drosophila melanogaster, chromosome 3R, regi... 37 2.4
emb|Z70754.1|CEF58E6 Caenorhabditis elegans cosmid F58E6, c... 37 3.1
emb|V01555.1|EBV Epstein-Barr virus (EBV) genome, strain B95-8 37 3.1
gb|M15973.1|HS4IR1X Epstein-Barr virus P3HR-1 (BamHI W frag... 37 3.1
gb|M99457.1|PUSMTCYTB Parantechinus apicalis cytochrome b g... 37 3.1
gb|S66429.1|S66429 Pax-3 [mice, C3H/HeJ, mRNA Partial, 127 nt] 37 3.1
gb|AF089733.1|AF089733 Drosophila melanogaster paired domai... 37 3.1
gb|U45255.1|HSPAXTWO11 Human paired-box protein PAX2 (PAX2)... 37 3.1
gb|AF092538.1|AF092538 Gallus gallus paired type homeodomai... 37 3.1
gb|J02072.1|HS4IRL epstein barr virus large internal repeat... 37 3.1
gb|J02069.1|HS4IR1 epstein-barr virus long internal reitera... 37 3.1
ref|NM_006982.1| Homo sapiens cartilage paired-class homeop... 37 3.1
gb|U31986.1|HSU31986 Human cartilage-specific homeodomain p... 37 3.1
emb|AJ010094.1|TBR010094 Trypanosoma brucei rhodesiense esa... 37 3.1
ref|NM_007770.1| Mus musculus cone-rod homeobox containing ... 37 3.1
gb|U77615.1|MMU77615 Mus musculus homeodomain protein (crx)... 37 3.1
gb|BC016502.1|BC016502 Mus musculus, cone-rod homeobox cont... 37 3.1
gb|AC084496.1|CBRG11A11 Caenorhabditis briggsae cosmid G11A... 37 3.1
gb|M80517.1|HS4B958RAJ Epstein-Barr virus, artifactual join... 37 3.1
gb|AF320224.1|AF320224S1 Rattus norvegicus retinal homeobox... 37 4.1
ref|NM_022716.1| Homo sapiens paired mesoderm homeo box 1 (... 37 4.1
ref|NM_053678.1| Rattus norvegicus retina and anterior neur... 37 4.1
gb|AF135839.1|AF135839 Rattus norvegicus homeodomain protei... 37 4.1
ref|XM_093237.1| Homo sapiens similar to Arx homeodomain pr... 37 4.1
emb|AJ250405.1|OLA250405 Oryzias latipes mRNA for Rx2 trans... 37 4.1
dbj|AK019503.1|AK019503 Mus musculus 0 day neonate skin cDN... 37 4.1
gb|U29174.1|RNU29174 Rattus norvegicus paired-like homeodom... 37 4.1
>dbj|AB026496.1|AB026496 Gallus gallus mRNA for paired-box containing protein Pax-2,
complete cds
Length = 1983
Score = 783 bits (2021), Expect = 0.0
Identities = 381/394 (96%), Positives = 381/394 (96%)
Frame = +2
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 173 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 352
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 353 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 532
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTI ND
Sbjct: 533 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIVPSTASPPVSSASND 712
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA
Sbjct: 713 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 892
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ
Sbjct: 893 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 1072
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA
Sbjct: 1073TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 1252
Query: 361 WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH
Sbjct: 1253WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 1354
>emb|Y10119.1|XLHDPA4 Xenopus laevis mRNA for paired box protein, clone HD.PA4
Length = 1921
Score = 746 bits (1925), Expect = 0.0
Identities = 361/394 (91%), Positives = 369/394 (93%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 19 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 198
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 199 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 378
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGT V PGHT+ ND
Sbjct: 379 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTLVPSTASPPVSSASND 558
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDED S+GS PNGDSQSSV+SLRKHLR D FTQQQLEA
Sbjct: 559 PVGSYSINGILGIPRSNGEKRKRDEDGSDGSGPNGDSQSSVESLRKHLRADNFTQQQLEA 738
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQT+EHIKSEQ +EYSLPALTPGLDEVKSSLS S N DLG+NVSGPQ
Sbjct: 739 LDRVFERPSYPDVFQTAEHIKSEQASEYSLPALTPGLDEVKSSLSASGNADLGSNVSGPQ 918
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
+YPVVTGRDM+STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA
Sbjct: 919 SYPVVTGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 1098
Query: 361 WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
WRFSNPALLSSPYYYSATSRGSAPPTAA AYDRH
Sbjct: 1099WRFSNPALLSSPYYYSATSRGSAPPTAATAYDRH 1200
>ref|NM_000278.1| Homo sapiens paired box gene 2 (PAX2), transcript variant b, mRNA
Length = 3421
Score = 745 bits (1923), Expect = 0.0
Identities = 364/394 (92%), Positives = 367/394 (92%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GTGV APGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQS VDSLRKHLR DTFTQQQLEA
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 1263
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGLDEVKSSLS S NP+LG+NVSG Q
Sbjct: 1264LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 1443
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT YNEA
Sbjct: 1444TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA 1623
Query: 361 WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
WRFSNPALLSSPYYYSA R SAP AAAYDRH
Sbjct: 1624WRFSNPALLSSPYYYSAAPR-SAPAARAAAYDRH 1722
>gb|M89470.1|HUMPAX2A Human paired-box protein (PAX2) mRNA, complete cds
Length = 3421
Score = 745 bits (1923), Expect = 0.0
Identities = 364/394 (92%), Positives = 367/394 (92%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GTGV APGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQS VDSLRKHLR DTFTQQQLEA
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 1263
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGLDEVKSSLS S NP+LG+NVSG Q
Sbjct: 1264LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 1443
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT YNEA
Sbjct: 1444TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA 1623
Query: 361 WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
WRFSNPALLSSPYYYSA R SAP AAAYDRH
Sbjct: 1624WRFSNPALLSSPYYYSAAPR-SAPAARAAAYDRH 1722
>ref|NM_003987.1| Homo sapiens paired box gene 2 (PAX2), transcript variant a, mRNA
Length = 3490
Score = 732 bits (1889), Expect = 0.0
Identities = 364/417 (87%), Positives = 367/417 (87%), Gaps = 23/417 (5%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GTGV APGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 181 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 217
PVGSYSINGILGIPRSNGEKRKRDE DVSEGSVPNGDS
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 1263
Query: 218 QSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGL 277
QS VDSLRKHLR DTFTQQQLEALDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGL
Sbjct: 1264QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1443
Query: 278 DEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 337
DEVKSSLS S NP+LG+NVSG QTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG
Sbjct: 1444DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1623
Query: 338 MVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
MVPGSEFSGNPYSHPQYT YNEAWRFSNPALLSSPYYYSA R SAP AAAYDRH
Sbjct: 1624MVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPR-SAPAARAAAYDRH 1791
>ref|NM_003988.1| Homo sapiens paired box gene 2 (PAX2), transcript variant c, mRNA
Length = 3505
Score = 730 bits (1884), Expect = 0.0
Identities = 364/422 (86%), Positives = 367/422 (86%), Gaps = 28/422 (6%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GTGV APGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQS VDSLRKHLR DTFTQQQLEA
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 1263
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGLDEVKSSLS S NP+LG+NVSG Q
Sbjct: 1264LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 1443
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT YNEA
Sbjct: 1444TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA 1623
Query: 361 WRFSNPALLS----------------------------SPYYYSATSRGSAPPTAAAAYD 392
WRFSNPALLS SPYYYSA R SAP AAAYD
Sbjct: 1624WRFSNPALLSEAAVGPSSSLMSKPGRKLAEVPPCVQPTSPYYYSAAPR-SAPAARAAAYD 1800
Query: 393 RH 394
RH
Sbjct: 1801RH 1806
>emb|Y10121.1|XLHDPA10 Xenopus laevis mRNA for paired box protein, clone HD.PA10
Length = 2121
Score = 729 bits (1881), Expect = 0.0
Identities = 361/427 (84%), Positives = 369/427 (85%), Gaps = 33/427 (7%)
Frame = +3
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 120 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 299
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 300 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 479
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGT V PGHT+ ND
Sbjct: 480 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTLVPSTASPPVSSASND 659
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDED S+GS PNGDSQSSV+SLRKHLR D FTQQQLEA
Sbjct: 660 PVGSYSINGILGIPRSNGEKRKRDEDGSDGSGPNGDSQSSVESLRKHLRADNFTQQQLEA 839
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQT+EHIKSEQ +EYSLPALTPGLDEVKSSLS S N DLG+NVSGPQ
Sbjct: 840 LDRVFERPSYPDVFQTAEHIKSEQASEYSLPALTPGLDEVKSSLSASGNADLGSNVSGPQ 1019
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP-------------------- 340
+YPVVTGRDM+STTLPGYPPHVPPTGQGSYPTSTLAGMVP
Sbjct: 1020SYPVVTGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGTNVSVHHSVQPVECCSCLS 1199
Query: 341 -------------GSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTA 387
GSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTA
Sbjct: 1200SSKPCLFHCRTGSGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTA 1379
Query: 388 AAAYDRH 394
A AYDRH
Sbjct: 1380ATAYDRH 1400
>gb|L25597.1|HUMPBXPROA Homo sapiens paired box protein mRNA, complete cds
Length = 3504
Score = 650 bits (1676), Expect(2) = 0.0
Identities = 317/340 (93%), Positives = 320/340 (93%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GTGV APGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQS VDSLRKHLR DTFTQQQLEA
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 1263
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGLDEVKSSLS S NP+LG+NVSG Q
Sbjct: 1264LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 1443
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP 340
TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP
Sbjct: 1444TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP 1563
Score = 97.4 bits (241), Expect(2) = 0.0
Identities = 46/53 (86%), Positives = 46/53 (86%)
Frame = +3
Query: 342 SEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
SEFSGNPYSHPQYT YNEAWRFSNPALLSSPYYYSA R SAP AAAYDRH
Sbjct: 1650 SEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPR-SAPAARAAAYDRH 1805
>ref|NM_003990.1| Homo sapiens paired box gene 2 (PAX2), transcript variant e, mRNA
Length = 3402
Score = 713 bits (1841), Expect = 0.0
Identities = 346/372 (93%), Positives = 349/372 (93%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GTGV APGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQS VDSLRKHLR DTFTQQQLEA
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 1263
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGLDEVKSSLS S NP+LG+NVSG Q
Sbjct: 1264LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 1443
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT YNEA
Sbjct: 1444TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA 1623
Query: 361 WRFSNPALLSSP 372
WRFSNPALL P
Sbjct: 1624WRFSNPALLMPP 1659
>emb|X55781.1|MMPAX2 M.musculus pax2 gene
Length = 2618
Score = 712 bits (1838), Expect = 0.0
Identities = 357/417 (85%), Positives = 363/417 (86%), Gaps = 23/417 (5%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 325 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 501
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 502 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 681
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GTGV APGHTI ND
Sbjct: 682 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 861
Query: 181 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 217
PVGSYSINGILGIPRSNGEKRKR+E DVSEGSVPNGDS
Sbjct: 862 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 1041
Query: 218 QSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGL 277
QS VDSLRKHLR DTFTQQQLEALDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGL
Sbjct: 1042QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1221
Query: 278 DEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 337
DEVKSSLS SANP+LG+NVSG QTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 1222DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 1401
Query: 338 MVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
MVPGSEFSGNPYSHPQYT YNEAWRFSNPALLSSPYYYSA R SAP AAAYDRH
Sbjct: 1402MVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPR-SAPAARAAAYDRH 1569
>ref|NM_003989.1| Homo sapiens paired box gene 2 (PAX2), transcript variant d, mRNA
Length = 3471
Score = 700 bits (1807), Expect = 0.0
Identities = 346/395 (87%), Positives = 349/395 (87%), Gaps = 23/395 (5%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GTGV APGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 181 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 217
PVGSYSINGILGIPRSNGEKRKRDE DVSEGSVPNGDS
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 1263
Query: 218 QSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGL 277
QS VDSLRKHLR DTFTQQQLEALDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGL
Sbjct: 1264QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1443
Query: 278 DEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 337
DEVKSSLS S NP+LG+NVSG QTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG
Sbjct: 1444DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1623
Query: 338 MVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSP 372
MVPGSEFSGNPYSHPQYT YNEAWRFSNPALL P
Sbjct: 1624MVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLMPP 1728
>gb|AF067541.1|AF067541 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1188
Score = 697 bits (1799), Expect = 0.0
Identities = 342/397 (86%), Positives = 358/397 (90%), Gaps = 3/397 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHP---GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 57
MD+HCKADPFSAMH GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 58 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDR 117
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDR
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 118 LLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXX 177
LLAEG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 178 XNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQ 237
NDPVGSYSINGILGIPRSNGEKRKRD+D S+GS PN DSQ SV+SLRKHLR D FTQQQ
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRDDDGSDGSGPNSDSQGSVESLRKHLRADAFTQQQ 720
Query: 238 LEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVS 297
LEALDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK SLSTS + DLG++VS
Sbjct: 721 LEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKPSLSTSVSSDLGSSVS 900
Query: 298 GPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTY 357
Q+YPVVTGR+MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYTTY
Sbjct: 901 --QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTY 1074
Query: 358 NEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
NEAWRFSNPALLSSPYYYSA SRGS PPTAA AYDRH
Sbjct: 1075NEAWRFSNPALLSSPYYYSAASRGSGPPTAATAYDRH 1185
>gb|AF067531.1|AF067531 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1176
Score = 696 bits (1796), Expect = 0.0
Identities = 341/394 (86%), Positives = 357/394 (90%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDIHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI ND
Sbjct: 358 EGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASND 537
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRD+D S+GS PN DSQ SV+SLRKHLR D FTQQQLEA
Sbjct: 538 PVGSYSINGILGIPRSNGEKRKRDDDGSDGSGPNSDSQGSVESLRKHLRADAFTQQQLEA 717
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK SLSTS + DLG++VS Q
Sbjct: 718 LDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKPSLSTSVSSDLGSSVS--Q 891
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
+YPVVTGR+MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYTTYNEA
Sbjct: 892 SYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEA 1071
Query: 361 WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
WRFSNPALLSSPYYYSA SRGS PPTAA AYDRH
Sbjct: 1072WRFSNPALLSSPYYYSAASRGSGPPTAATAYDRH 1173
>emb|X63961.1|BRPAXZFB B.rerio pax[zf-b] mRNA
Length = 2409
Score = 696 bits (1796), Expect = 0.0
Identities = 341/394 (86%), Positives = 357/394 (90%)
Frame = +3
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 627 MDIHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 803
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 804 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 983
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI ND
Sbjct: 984 EGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASND 1163
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRD+D S+GS PN DSQ SV+SLRKHLR D FTQQQLEA
Sbjct: 1164 PVGSYSINGILGIPRSNGEKRKRDDDGSDGSGPNSDSQGSVESLRKHLRADAFTQQQLEA 1343
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK SLSTS + DLG++VS Q
Sbjct: 1344 LDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKPSLSTSVSSDLGSSVS--Q 1517
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
+YPVVTGR+MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYTTYNEA
Sbjct: 1518 SYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEA 1697
Query: 361 WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
WRFSNPALLSSPYYYSA SRGS PPTAA AYDRH
Sbjct: 1698 WRFSNPALLSSPYYYSAASRGSGPPTAATAYDRH 1799
>emb|Y07617.1|MMPAX21NE M.musculus pax2-1Neu gene
Length = 1327
Score = 688 bits (1775), Expect = 0.0
Identities = 344/402 (85%), Positives = 348/402 (85%), Gaps = 23/402 (5%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G GGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 112 GTGV*TSSGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 291
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI
Sbjct: 292 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 471
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPR 195
NRIIRTKVQQPFHPTPDG+GTGV APGHTI NDPVGSYSINGILGIPR
Sbjct: 472 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPR 651
Query: 196 SNGEKRKRDE-----------------------DVSEGSVPNGDSQSSVDSLRKHLRGDT 232
SNGEKRKR+E DVSEGSVPNGDSQS VDSLRKHLR DT
Sbjct: 652 SNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT 831
Query: 233 FTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDL 292
FTQQQLEALDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGLDEVKSSLS SANP+L
Sbjct: 832 FTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPEL 1011
Query: 293 GTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHP 352
G+NVSG QTYPVVTGRDM STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHP
Sbjct: 1012GSNVSGTQTYPVVTGRDMTSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHP 1191
Query: 353 QYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
QYT YNEAWRFSNPALLSSPYYYSA RGSAP AAAAYDRH
Sbjct: 1192QYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH 1317
Score = 55.5 bits (132), Expect = 8e-06
Identities = 33/51 (64%), Positives = 34/51 (65%)
Frame = +3
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRP 51
MDMHCKADPFSAMH HGGVNQLGG V RP P R E AH+G P
Sbjct: 69 MDMHCKADPFSAMH-RHGGVNQLGG-GVCERPAP----TRRGEAAHRGAGP 203
>gb|AF067534.1|AF067534 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1233
Score = 685 bits (1768), Expect = 0.0
Identities = 341/412 (82%), Positives = 358/412 (86%), Gaps = 18/412 (4%)
Frame = +1
Query: 1 MDMHCKADPFSAMHP---GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 57
MD+HCKADPFSAMH GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 58 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDR 117
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDR
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 118 LLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXX 177
LLAEG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 178 XNDPVGSYSINGILGIPRSNGEKRKRDEDV---------------SEGSVPNGDSQSSVD 222
NDPVGSYSINGILGIPRSNGEKRKRD+ + S+GS PN DSQ SV+
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIGYHGSDGSGPNSDSQGSVE 720
Query: 223 SLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKS 282
SLRKHLR D FTQQQLEALDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK
Sbjct: 721 SLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKP 900
Query: 283 SLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS 342
SLSTS + DLG++VS Q+YPVVTGR+MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS
Sbjct: 901 SLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS 1074
Query: 343 EFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
+FSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSA SRGS PPTAA AYDRH
Sbjct: 1075DFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSAASRGSGPPTAATAYDRH 1230
>gb|AF067530.1|AF067530 Danio rerio paired box protein Pax2.1 splice variant mRNA, complete
cds
Length = 1221
Score = 684 bits (1765), Expect = 0.0
Identities = 340/409 (83%), Positives = 357/409 (87%), Gaps = 15/409 (3%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDIHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI ND
Sbjct: 358 EGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASND 537
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDV---------------SEGSVPNGDSQSSVDSLR 225
PVGSYSINGILGIPRSNGEKRKRD+ + S+GS PN DSQ SV+SLR
Sbjct: 538 PVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIGYHGSDGSGPNSDSQGSVESLR 717
Query: 226 KHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLS 285
KHLR D FTQQQLEALDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK SLS
Sbjct: 718 KHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKPSLS 897
Query: 286 TSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFS 345
TS + DLG++VS Q+YPVVTGR+MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS+FS
Sbjct: 898 TSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFS 1071
Query: 346 GNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
GNPYSHPQYTTYNEAWRFSNPALLSSPYYYSA SRGS PPTAA AYDRH
Sbjct: 1072GNPYSHPQYTTYNEAWRFSNPALLSSPYYYSAASRGSGPPTAATAYDRH 1218
>emb|Y10123.1|XLPBS32 Xenopus laevis mRNA for paired box protein, clone pBS.32
Length = 1096
Score = 674 bits (1740), Expect = 0.0
Identities = 334/394 (84%), Positives = 342/394 (86%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 180
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 181 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 360
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGT V PGHT+
Sbjct: 361 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTL--------------- 495
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
D S+GS PNGDSQSSV+SLRKHLR D FTQQQLEA
Sbjct: 496 -------------------------DGSDGSGPNGDSQSSVESLRKHLRADNFTQQQLEA 600
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQT+EHIKSEQ +EYSLPALTPGLDEVKSSLS S N DLG+NVSGPQ
Sbjct: 601 LDRVFERPSYPDVFQTAEHIKSEQASEYSLPALTPGLDEVKSSLSASGNADLGSNVSGPQ 780
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
+YPVVTGRDM+STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA
Sbjct: 781 SYPVVTGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 960
Query: 361 WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
WRFSNPALLSSPYYYSATSRGSAPPTAA AYDRH
Sbjct: 961 WRFSNPALLSSPYYYSATSRGSAPPTAATAYDRH 1062
>gb|AF072547.1|AF072547 Danio rerio transcription factor (Pax2.2) mRNA, complete cds
Length = 2652
Score = 672 bits (1734), Expect = 0.0
Identities = 337/394 (85%), Positives = 352/394 (88%)
Frame = +3
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 447 MDIHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 623
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIRDRLLA
Sbjct: 624 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLA 803
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHP+PD GT ++ PGHTI ND
Sbjct: 804 EGICDNDTVPSVSSINRIIRTKVQQPFHPSPD--GTSLSTPGHTIIPSTASPPVSSSSND 977
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRD D SEGS + DSQ SV+SLRKHLR D FTQQQLEA
Sbjct: 978 PVGSYSINGILGIPRSNGEKRKRDADGSEGSAQSSDSQGSVESLRKHLRADAFTQQQLEA 1157
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERP++PDVF TSEHIK EQ +EYSLPAL GLDEVK SLS+SA DLG +VS Q
Sbjct: 1158LDRVFERPAFPDVFPTSEHIKPEQASEYSLPALNTGLDEVKPSLSSSAASDLGASVS--Q 1331
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
+YPV GRDMA+TTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA
Sbjct: 1332SYPV--GRDMANTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 1505
Query: 361 WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
WRFSNPA+LSSPYYYSA SRGSAPPTAA AYDRH
Sbjct: 1506WRFSNPAILSSPYYYSA-SRGSAPPTAATAYDRH 1604
>emb|Y10120.1|XLHDPA7 Xenopus laevis mRNA for paired box protein, clone HD.PA7
Length = 2366
Score = 667 bits (1721), Expect = 0.0
Identities = 344/464 (74%), Positives = 357/464 (76%), Gaps = 70/464 (15%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 76 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 255
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIRDRLLA
Sbjct: 256 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLA 435
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD GT V+ PGHT+ ND
Sbjct: 436 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD--GTPVSTPGHTLVPSTASPPVSSASND 609
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDED S+GS PNGDSQSSV+SLRKHLR D FTQQQLEA
Sbjct: 610 PVGSYSINGILGIPRSNGEKRKRDEDGSDGSGPNGDSQSSVESLRKHLRADNFTQQQLEA 789
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQ++EHIKSEQ +EYSLPALTPGLDEVKSSLS S N DLG+NVSGPQ
Sbjct: 790 LDRVFERPSYPDVFQSAEHIKSEQASEYSLPALTPGLDEVKSSLSASGNADLGSNVSGPQ 969
Query: 301 TYPVVTGR-----------------------------------------DMASTTLPGYP 319
+YPVVT D ++ T +
Sbjct: 970 SYPVVTESFASHLYLKQEPHEASLTPFTPSSLASSGLADIQPFQMALTVDASTPTYSSFT 1149
Query: 320 PHVPPTG-----------------------------QGSYPTSTLAGMVPGSEFSGNPYS 350
H PP G QGSYPTSTLAGMVPGSEFSGNPYS
Sbjct: 1150HHGPPYGQFGSQPLIAGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYS 1329
Query: 351 HPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
HPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAA AYDRH
Sbjct: 1330HPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAATAYDRH 1461
>gb|AF067538.1|AF067538 Danio rerio paired box protein pax2.1 splice variant mRNA, partial
cds
Length = 1169
Score = 651 bits (1679), Expect = 0.0
Identities = 320/372 (86%), Positives = 336/372 (90%), Gaps = 3/372 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHP---GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 57
MD+HCKADPFSAMH GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 58 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDR 117
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDR
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 118 LLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXX 177
LLAEG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 178 XNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQ 237
NDPVGSYSINGILGIPRSNGEKRKRD+D S+GS PN DSQ SV+SLRKHLR D FTQQQ
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRDDDGSDGSGPNSDSQGSVESLRKHLRADAFTQQQ 720
Query: 238 LEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVS 297
LEALDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK SLSTS + DLG++VS
Sbjct: 721 LEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKPSLSTSVSSDLGSSVS 900
Query: 298 GPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTY 357
Q+YPVVTGR+MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYTTY
Sbjct: 901 --QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTY 1074
Query: 358 NEAWRFSNPALL 369
NEAWRFSNPALL
Sbjct: 1075NEAWRFSNPALL 1110
Score = 39.3 bits (90), Expect = 0.63
Identities = 24/55 (43%), Positives = 27/55 (48%), Gaps = 14/55 (25%)
Frame = +3
Query: 354 YTTYNEAW-RFSNPALLS-------------SPYYYSATSRGSAPPTAAAAYDRH 394
YT +N W R +LLS P +A SRGS PPTAA AYDRH
Sbjct: 1002 YTCWNGPWKRLFRKSLLSPAVHNLQ*SLAVQQPRVINAASRGSGPPTAATAYDRH 1166
>gb|AF067539.1|AF067539 Danio rerio paired box protein pax2.1 splice variant mRNA, partial
cds
Length = 1157
Score = 650 bits (1676), Expect = 0.0
Identities = 319/369 (86%), Positives = 335/369 (90%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDIHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI ND
Sbjct: 358 EGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASND 537
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRD+D S+GS PN DSQ SV+SLRKHLR D FTQQQLEA
Sbjct: 538 PVGSYSINGILGIPRSNGEKRKRDDDGSDGSGPNSDSQGSVESLRKHLRADAFTQQQLEA 717
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK SLSTS + DLG++VS Q
Sbjct: 718 LDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKPSLSTSVSSDLGSSVS--Q 891
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
+YPVVTGR+MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYTTYNEA
Sbjct: 892 SYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEA 1071
Query: 361 WRFSNPALL 369
WRFSNPALL
Sbjct: 1072WRFSNPALL 1098
Score = 39.3 bits (90), Expect = 0.63
Identities = 24/55 (43%), Positives = 27/55 (48%), Gaps = 14/55 (25%)
Frame = +3
Query: 354 YTTYNEAW-RFSNPALLS-------------SPYYYSATSRGSAPPTAAAAYDRH 394
YT +N W R +LLS P +A SRGS PPTAA AYDRH
Sbjct: 990 YTCWNGPWKRLFRKSLLSPAVHNLQ*SLAVQQPRVINAASRGSGPPTAATAYDRH 1154
>emb|AJ000666.1|XLAJ666 Xenopus laevis mRNA for paired box protein, clone pBS.29
Length = 1189
Score = 648 bits (1671), Expect = 0.0
Identities = 331/427 (77%), Positives = 341/427 (79%), Gaps = 33/427 (7%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 180
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIRDRLLA
Sbjct: 181 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLA 360
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD GT V+ PGHT+
Sbjct: 361 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD--GTPVSTPGHTL--------------- 489
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
D S+GS PNGDSQSSV+SLRKHLR D FTQQQLEA
Sbjct: 490 -------------------------DGSDGSGPNGDSQSSVESLRKHLRADNFTQQQLEA 594
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQT+EHIKSEQ +EYSLPALTPGLDEVKSSLS S N DLG+NVSGPQ
Sbjct: 595 LDRVFERPSYPDVFQTAEHIKSEQASEYSLPALTPGLDEVKSSLSASGNADLGSNVSGPQ 774
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP-------------------- 340
+YPVVTGRDM+STTLPGYPPHVPPTGQGSYPTSTLAGMVP
Sbjct: 775 SYPVVTGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGTNVSVHHSVQPVECCSCLS 954
Query: 341 -------------GSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTA 387
GSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTA
Sbjct: 955 SSKPCLFHCRTGSGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTA 1134
Query: 388 AAAYDRH 394
A AYDRH
Sbjct: 1135ATAYDRH 1155
>emb|Y10122.1|XLPBS4 Xenopus laevis mRNA for paired box protein, clone pBS.4
Length = 1525
Score = 647 bits (1670), Expect = 0.0
Identities = 344/497 (69%), Positives = 355/497 (71%), Gaps = 103/497 (20%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 180
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKV TPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 181 SHGCVSKILGRYYETGSIKPGVIGGSKPKVTTPKVVDKIAEYKRQNPTMFAWEIRDRLLA 360
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKV+QPFHPTPDGSGT V PGHT+ ND
Sbjct: 361 EGICDNDTVPSVSSINRIIRTKVRQPFHPTPDGSGTPVGTPGHTLVPSTASPPVSSASND 540
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDED S+GS PNGDSQSSV+SLRKHLR D FTQQQLEA
Sbjct: 541 PVGSYSINGILGIPRSNGEKRKRDEDGSDGSGPNGDSQSSVESLRKHLRADNFTQQQLEA 720
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVFQT+EHIKSEQ +EYSLPALTPGLDEVKSSLS S N DLG+NVSGPQ
Sbjct: 721 LDRVFERPSYPDVFQTAEHIKSEQASEYSLPALTPGLDEVKSSLSASGNADLGSNVSGPQ 900
Query: 301 TYPVVTGR-----------------------------------------DMASTTLPGYP 319
+YPVVT D ++ T +
Sbjct: 901 SYPVVTESFASHLYVKQEPHEASLTPFTPSSLASSGLADIQPFQMALTVDASTPTYSSFT 1080
Query: 320 PHVPPTGQ-GSYP----------------------------TSTLAGMVPG--------- 341
H P GQ GS P TSTLAGMVPG
Sbjct: 1081HHGPHYGQFGSQPLIAGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGTNVSVHHSV 1260
Query: 342 ------------------------SEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSA 377
SEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSA
Sbjct: 1261QPVECCSCLSSSKPCLFHCRTGSGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSA 1440
Query: 378 TSRGSAPPTAAAAYDRH 394
TSRGSAPPTAA AYDRH
Sbjct: 1441TSRGSAPPTAATAYDRH 1491
>gb|AF067537.1|AF067537 Danio rerio paired box protein pax2.1 splice variant mRNA, partial
cds
Length = 1214
Score = 639 bits (1648), Expect = 0.0
Identities = 319/387 (82%), Positives = 336/387 (86%), Gaps = 18/387 (4%)
Frame = +1
Query: 1 MDMHCKADPFSAMHP---GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 57
MD+HCKADPFSAMH GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 58 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDR 117
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDR
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 118 LLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXX 177
LLAEG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 178 XNDPVGSYSINGILGIPRSNGEKRKRDEDV---------------SEGSVPNGDSQSSVD 222
NDPVGSYSINGILGIPRSNGEKRKRD+ + S+GS PN DSQ SV+
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIGYHGSDGSGPNSDSQGSVE 720
Query: 223 SLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKS 282
SLRKHLR D FTQQQLEALDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK
Sbjct: 721 SLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKP 900
Query: 283 SLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS 342
SLSTS + DLG++VS Q+YPVVTGR+MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS
Sbjct: 901 SLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS 1074
Query: 343 EFSGNPYSHPQYTTYNEAWRFSNPALL 369
+FSGNPYSHPQYTTYNEAWRFSNPALL
Sbjct: 1075DFSGNPYSHPQYTTYNEAWRFSNPALL 1155
Score = 39.3 bits (90), Expect = 0.63
Identities = 24/55 (43%), Positives = 27/55 (48%), Gaps = 14/55 (25%)
Frame = +3
Query: 354 YTTYNEAW-RFSNPALLS-------------SPYYYSATSRGSAPPTAAAAYDRH 394
YT +N W R +LLS P +A SRGS PPTAA AYDRH
Sbjct: 1047 YTCWNGPWKRLFRKSLLSPAVHNLQ*SLAVQQPRVINAASRGSGPPTAATAYDRH 1211
>gb|AF067540.1|AF067540 Danio rerio paired box protein pax2.1 splice variant mRNA, partial
cds
Length = 1202
Score = 638 bits (1645), Expect = 0.0
Identities = 318/384 (82%), Positives = 335/384 (86%), Gaps = 15/384 (3%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDIHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI ND
Sbjct: 358 EGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASND 537
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDV---------------SEGSVPNGDSQSSVDSLR 225
PVGSYSINGILGIPRSNGEKRKRD+ + S+GS PN DSQ SV+SLR
Sbjct: 538 PVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIGYHGSDGSGPNSDSQGSVESLR 717
Query: 226 KHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLS 285
KHLR D FTQQQLEALDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK SLS
Sbjct: 718 KHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKPSLS 897
Query: 286 TSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFS 345
TS + DLG++VS Q+YPVVTGR+MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS+FS
Sbjct: 898 TSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFS 1071
Query: 346 GNPYSHPQYTTYNEAWRFSNPALL 369
GNPYSHPQYTTYNEAWRFSNPALL
Sbjct: 1072GNPYSHPQYTTYNEAWRFSNPALL 1143
Score = 39.3 bits (90), Expect = 0.63
Identities = 24/55 (43%), Positives = 27/55 (48%), Gaps = 14/55 (25%)
Frame = +3
Query: 354 YTTYNEAW-RFSNPALLS-------------SPYYYSATSRGSAPPTAAAAYDRH 394
YT +N W R +LLS P +A SRGS PPTAA AYDRH
Sbjct: 1035 YTCWNGPWKRLFRKSLLSPAVHNLQ*SLAVQQPRVINAASRGSGPPTAATAYDRH 1199
>gb|AF067532.1|AF067532 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1280
Score = 624 bits (1608), Expect = e-177
Identities = 318/409 (77%), Positives = 335/409 (81%), Gaps = 40/409 (9%)
Frame = +1
Query: 1 MDMHCKADPFSAMHP---GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 57
MD+HCKADPFSAMH GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 58 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDR 117
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDR
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 118 LLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXX 177
LLAEG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 178 XNDPVGSYSINGILGIPRSNGEKRKRDEDV---------------SEGSVPNGDSQSSVD 222
NDPVGSYSINGILGIPRSNGEKRKRD+ + S+GS PN DSQ SV+
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIGYHGSDGSGPNSDSQGSVE 720
Query: 223 SLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKS 282
SLRKHLR D FTQQQLEALDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK
Sbjct: 721 SLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKP 900
Query: 283 SLSTSANPDLGTNVSGPQTYPVVTG----------------------RDMASTTLPGYPP 320
SLSTS + DLG++VS Q+YPVVT R+MASTTLPGYPP
Sbjct: 901 SLSTSVSSDLGSSVS--QSYPVVTDKSAGSTVPAGH*DVHILDCFMCREMASTTLPGYPP 1074
Query: 321 HVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALL 369
HVPPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYTTYNEAWRFSNPALL
Sbjct: 1075HVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEAWRFSNPALL 1221
Score = 39.3 bits (90), Expect = 0.63
Identities = 24/55 (43%), Positives = 27/55 (48%), Gaps = 14/55 (25%)
Frame = +3
Query: 354 YTTYNEAW-RFSNPALLS-------------SPYYYSATSRGSAPPTAAAAYDRH 394
YT +N W R +LLS P +A SRGS PPTAA AYDRH
Sbjct: 1113 YTCWNGPWKRLFRKSLLSPAVHNLQ*SLAVQQPRVINAASRGSGPPTAATAYDRH 1277
>gb|AF067536.1|AF067536 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1268
Score = 622 bits (1605), Expect = e-176
Identities = 317/406 (78%), Positives = 334/406 (82%), Gaps = 37/406 (9%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDIHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI ND
Sbjct: 358 EGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASND 537
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDV---------------SEGSVPNGDSQSSVDSLR 225
PVGSYSINGILGIPRSNGEKRKRD+ + S+GS PN DSQ SV+SLR
Sbjct: 538 PVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIGYHGSDGSGPNSDSQGSVESLR 717
Query: 226 KHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLS 285
KHLR D FTQQQLEALDRVFERPSYPDVF TSEHIK EQ NEYSLPAL PGLDEVK SLS
Sbjct: 718 KHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKPSLS 897
Query: 286 TSANPDLGTNVSGPQTYPVVTG----------------------RDMASTTLPGYPPHVP 323
TS + DLG++VS Q+YPVVT R+MASTTLPGYPPHVP
Sbjct: 898 TSVSSDLGSSVS--QSYPVVTDKSAGSTVPAGH*DVHILDCFMCREMASTTLPGYPPHVP 1071
Query: 324 PTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALL 369
PTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYTTYNEAWRFSNPALL
Sbjct: 1072PTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEAWRFSNPALL 1209
Score = 39.3 bits (90), Expect = 0.63
Identities = 24/55 (43%), Positives = 27/55 (48%), Gaps = 14/55 (25%)
Frame = +3
Query: 354 YTTYNEAW-RFSNPALLS-------------SPYYYSATSRGSAPPTAAAAYDRH 394
YT +N W R +LLS P +A SRGS PPTAA AYDRH
Sbjct: 1101 YTCWNGPWKRLFRKSLLSPAVHNLQ*SLAVQQPRVINAASRGSGPPTAATAYDRH 1265
>gb|AF067533.1|AF067533 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1056
Score = 619 bits (1597), Expect = e-175
Identities = 310/394 (78%), Positives = 321/394 (80%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDIHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI ND
Sbjct: 358 EGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASND 537
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRD+D S+GS PN DSQ SV+SLRKHLR D FTQQQLEA
Sbjct: 538 PVGSYSINGILGIPRSNGEKRKRDDDGSDGSGPNSDSQGSVESLRKHLRADAFTQQQLEA 717
Query: 241 LDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQ 300
LDRVFERPSYPDVF TSEHIK EQG E
Sbjct: 718 LDRVFERPSYPDVFPTSEHIKPEQGRE--------------------------------- 798
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEA 360
MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYTTYNEA
Sbjct: 799 ---------MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEA 951
Query: 361 WRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
WRFSNPALLSSPYYYSA SRGS PPTAA AYDRH
Sbjct: 952 WRFSNPALLSSPYYYSAASRGSGPPTAATAYDRH 1053
>emb|Z97020.1|OLZ97020 Oryzias latipes mRNA for PAX2 protein
Length = 1082
Score = 605 bits (1560), Expect = e-171
Identities = 305/367 (83%), Positives = 320/367 (87%), Gaps = 8/367 (2%)
Frame = +1
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
ADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS
Sbjct: 1 ADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 177
Query: 67 KILGR--------YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
KILGR YYETGSIKPGVIGGSKPKVATPKVV+KIA+YKRQNPTMFAWEIRDRL
Sbjct: 178 KILGRWVKIPRPRYYETGSIKPGVIGGSKPKVATPKVVEKIADYKRQNPTMFAWEIRDRL 357
Query: 119 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXX 178
LAEGICDNDTVPSVSSINRIIRTKVQQPFHP+PDG T ++ PGHTI
Sbjct: 358 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPSPDG--TSLSTPGHTIVPSTASPPVTSAS 531
Query: 179 NDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQL 238
NDP GSYSINGILGIPRSNGEKRKRD+D S+GS PN DSQ SV+SLRKHLR D FTQQQL
Sbjct: 532 NDPAGSYSINGILGIPRSNGEKRKRDDDGSDGSGPNSDSQGSVESLRKHLRADAFTQQQL 711
Query: 239 EALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSG 298
EALDRVFERPSYPDVF T+EHIK EQ NEYSLPAL LDEVK SLS++ANPDLG +VS
Sbjct: 712 EALDRVFERPSYPDVFPTAEHIKPEQANEYSLPALNSSLDEVKPSLSSTANPDLGPSVS- 888
Query: 299 PQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYN 358
Q+YPV GRDMA+TTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYN
Sbjct: 889 -QSYPV--GRDMANTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYN 1059
Query: 359 EAWRFSN 365
EAW F+N
Sbjct: 1060EAWSFTN 1080
>gb|AF179300.1|AF179300 Xenopus laevis Pax-2 protein (Pax-2) mRNA, complete cds
Length = 2287
Score = 601 bits (1549), Expect = e-170
Identities = 330/497 (66%), Positives = 348/497 (69%), Gaps = 103/497 (20%)
Frame = +3
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 312 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 488
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIRDRLLA
Sbjct: 489 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLA 668
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG T V+ PGHT+ ND
Sbjct: 669 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG--TPVSTPGHTLVPSTASPPVSSASND 842
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDED S+GS PNGDSQSSV+SLRKHLR D FTQQQLEA
Sbjct: 843 PVGSYSINGILGIPRSNGEKRKRDEDGSDGSGPNGDSQSSVESLRKHLRADNFTQQQLEA 1022
Query: 241 LDRVFERPSYPDVF---------QTSEH-----------IKS------------------ 262
LDRVFERPSYPDVF Q SE+ +KS
Sbjct: 1023LDRVFERPSYPDVFQSAEHIKSEQASEYSLPALTPGLDEVKSSLSASGNADLGSNVSGPQ 1202
Query: 263 ----------------EQGNEYSLPALTP------GLDE---------VKSSLSTSANPD 291
++ +E SL TP GL ++ L T+ +P
Sbjct: 1203SYPVVTESFASHLYLKQEPHEASLTPFTPSSLASSGLTSSLSRWPSRLMRQHLRTAPSPT 1382
Query: 292 LGT-NVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPG--------- 341
+ G Q P++ GRDM+STTLPGYPPHVPPTGQGSYPTSTLAGMVPG
Sbjct: 1383MAPYGQFGSQ--PLIAGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGTNVSVHHSV 1556
Query: 342 ------------------------SEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSA 377
SEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSA
Sbjct: 1557QPVECCSCLSSSKPCLFHCRTGSGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSA 1736
Query: 378 TSRGSAPPTAAAAYDRH 394
TSRGSAPPTAA AYDRH
Sbjct: 1737TSRGSAPPTAATAYDRH 1787
>emb|AJ010503.1|XLA010503 Xenopus laevis mRNA for paired box protein, clone pBS.5Pax16
Length = 1167
Score = 559 bits (1441), Expect = e-157
Identities = 280/397 (70%), Positives = 315/397 (78%), Gaps = 3/397 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
M++HCK DPF+AMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MEIHCKHDPFAAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
E +CDNDTVPSVSSINRIIRTKVQQP + + H+I D
Sbjct: 358 ERVCDNDTVPSVSSINRIIRTKVQQP-------TNQQIPPSNHSIASTGSVTQVSSVSTD 516
Query: 181 PVG-SYSINGILGIPRSNGE--KRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQ 237
G SYSI+GILGI SN E KRKRDE + E +PNG S D LRK +RGD FTQQQ
Sbjct: 517 SAGSSYSISGILGITSSNAETNKRKRDEGIQESPIPNGHSLPGRDFLRKQMRGDLFTQQQ 696
Query: 238 LEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVS 297
L+ LDRVFER Y D+F ++E IK EQ ++ +LT GLDE+KSSL++ ++ D+G V
Sbjct: 697 LDVLDRVFERQHYTDIFTSTEPIKPEQTEYSAMASLTGGLDEMKSSLTSPSSADIGGTVP 876
Query: 298 GPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTY 357
GPQ+YP+VTGRD+ASTTLPGYPPHVPP GQGSY TL GMVPGS+FSG+PYSHPQY++Y
Sbjct: 877 GPQSYPLVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSDFSGSPYSHPQYSSY 1056
Query: 358 NEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
N++WRF NP LL SPYYYSA +RG APP AAAYDRH
Sbjct: 1057NDSWRFPNPGLLGSPYYYSA-ARGGAPPATAAAYDRH 1164
>gb|M96944.1|HUMBSAP Human B-cell specific transcription factor (BSAP) mRNA, complete
cds
Length = 3277
Score = 547 bits (1410), Expect = e-154
Identities = 274/383 (71%), Positives = 305/383 (79%), Gaps = 4/383 (1%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 121 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 300
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAE +CDNDTVPSVSSI
Sbjct: 301 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 480
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVG-SYSINGILGI- 193
NRIIRTKVQQP V A H+I D G SYSI+GILGI
Sbjct: 481 NRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGIT 639
Query: 194 -PRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPD 252
P ++ KRKRDE + E VPNG S D LRK +RGD FTQQQLE LDRVFER Y D
Sbjct: 640 SPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSD 819
Query: 253 VFQTSEHIKSEQGNEYS-LPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMA 311
+F T+E IK EQ EYS + +L GLD++K++L++ D+G++V GPQ+YP+VTGRD+A
Sbjct: 820 IFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLA 999
Query: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSS 371
STTLPGYPPHVPP GQGSY TL GMVPGSEFSG+PYSHPQY++YN++WRF NP LL S
Sbjct: 1000STTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGLLGS 1179
Query: 372 PYYYSATSRGSAPPTAAAAYDRH 394
PYYYSA +RG+APP AA AYDRH
Sbjct: 1180PYYYSAAARGAAPPAAATAYDRH 1248
>ref|NM_016734.1| Homo sapiens paired box gene 5 (B-cell lineage specific activator
protein) (PAX5), mRNA
Length = 3650
Score = 547 bits (1410), Expect = e-154
Identities = 274/383 (71%), Positives = 305/383 (79%), Gaps = 4/383 (1%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 494 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 673
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAE +CDNDTVPSVSSI
Sbjct: 674 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 853
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVG-SYSINGILGI- 193
NRIIRTKVQQP V A H+I D G SYSI+GILGI
Sbjct: 854 NRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGIT 1012
Query: 194 -PRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPD 252
P ++ KRKRDE + E VPNG S D LRK +RGD FTQQQLE LDRVFER Y D
Sbjct: 1013SPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSD 1192
Query: 253 VFQTSEHIKSEQGNEYS-LPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMA 311
+F T+E IK EQ EYS + +L GLD++K++L++ D+G++V GPQ+YP+VTGRD+A
Sbjct: 1193IFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLA 1372
Query: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSS 371
STTLPGYPPHVPP GQGSY TL GMVPGSEFSG+PYSHPQY++YN++WRF NP LL S
Sbjct: 1373STTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGLLGS 1552
Query: 372 PYYYSATSRGSAPPTAAAAYDRH 394
PYYYSA +RG+APP AA AYDRH
Sbjct: 1553PYYYSAAARGAAPPAAATAYDRH 1621
>dbj|AB004249.1|AB004249 Gallus gallus Pax-5 mRNA, complete cds
Length = 1302
Score = 546 bits (1408), Expect = e-154
Identities = 273/383 (71%), Positives = 303/383 (78%), Gaps = 4/383 (1%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 155 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 334
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAE +CDNDTVPSVSSI
Sbjct: 335 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 514
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVG-SYSINGILGI- 193
NRIIRTKVQQP V H+I D G SYSI+GILGI
Sbjct: 515 NRIIRTKVQQP-------PNQQVPVSSHSIASTGSVTQVSSVSTDSAGSSYSISGILGIA 673
Query: 194 -PRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPD 252
P + KRKRDE + E VPNG S D LRK +RGD FTQQQLE LDRVFER Y D
Sbjct: 674 SPGTESNKRKRDEGIQEPPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSD 853
Query: 253 VFQTSEHIKSEQGNEYS-LPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMA 311
+F T+E IK EQ EYS + +L GLD++K+++++ + DLG +V GPQ+YP+VTGR++A
Sbjct: 854 IFTTTEPIKPEQATEYSAMASLAGGLDDMKANITSPTSADLGASVPGPQSYPIVTGRELA 1033
Query: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSS 371
STTLPGYPPHVPP GQGSY L GMVPGSEFSG+PYSHPQY+TYN++WRF NP LL S
Sbjct: 1034STTLPGYPPHVPPAGQGSYSAPALTGMVPGSEFSGSPYSHPQYSTYNDSWRFPNPGLLGS 1213
Query: 372 PYYYSATSRGSAPPTAAAAYDRH 394
PYYYSA +RG+APP AAAAYDRH
Sbjct: 1214PYYYSAAARGAAPPAAAAAYDRH 1282
>ref|NM_008782.1| Mus musculus paired box gene 5 (Pax5), mRNA
Length = 1208
Score = 546 bits (1406), Expect = e-153
Identities = 275/398 (69%), Positives = 308/398 (77%), Gaps = 4/398 (1%)
Frame = +3
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+ + GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 33 MDLEKNYPTPRTIRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 212
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 213 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 392
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
E +CDNDTVPSVSSINRIIRTKVQQP V A H+I D
Sbjct: 393 ERVCDNDTVPSVSSINRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTD 551
Query: 181 PVG-SYSINGILGI--PRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQ 237
G SYSI+GILGI P ++ KRKRDE + E VPNG S D LRK +RGD FTQQQ
Sbjct: 552 SAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQ 731
Query: 238 LEALDRVFERPSYPDVFQTSEHIKSEQGNEYS-LPALTPGLDEVKSSLSTSANPDLGTNV 296
LE LDRVFER Y D+F T+E IK EQ EYS + +L GLD++K++L++ D+G++V
Sbjct: 732 LEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLTSPTPADIGSSV 911
Query: 297 SGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTT 356
GPQ+YP+VTGRD+ASTTLPGYPPHVPP GQGSY TL GMVPGSEFSG+PYSHPQY++
Sbjct: 912 PGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSS 1091
Query: 357 YNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
YN++WRF NP LL SPYYYS +RG+APP AA AYDRH
Sbjct: 1092YNDSWRFPNPGLLGSPYYYSPAARGAAPPAAATAYDRH 1205
>gb|M97013.1|MUSBSAP Mouse B-cell specific transcription factor (Pax-5) mRNA, complete
cds
Length = 1208
Score = 546 bits (1406), Expect = e-153
Identities = 275/398 (69%), Positives = 308/398 (77%), Gaps = 4/398 (1%)
Frame = +3
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+ + GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 33 MDLEKNYPTPRTIRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 212
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 213 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 392
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
E +CDNDTVPSVSSINRIIRTKVQQP V A H+I D
Sbjct: 393 ERVCDNDTVPSVSSINRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTD 551
Query: 181 PVG-SYSINGILGI--PRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQ 237
G SYSI+GILGI P ++ KRKRDE + E VPNG S D LRK +RGD FTQQQ
Sbjct: 552 SAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQ 731
Query: 238 LEALDRVFERPSYPDVFQTSEHIKSEQGNEYS-LPALTPGLDEVKSSLSTSANPDLGTNV 296
LE LDRVFER Y D+F T+E IK EQ EYS + +L GLD++K++L++ D+G++V
Sbjct: 732 LEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLTSPTPADIGSSV 911
Query: 297 SGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTT 356
GPQ+YP+VTGRD+ASTTLPGYPPHVPP GQGSY TL GMVPGSEFSG+PYSHPQY++
Sbjct: 912 PGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSS 1091
Query: 357 YNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
YN++WRF NP LL SPYYYS +RG+APP AA AYDRH
Sbjct: 1092YNDSWRFPNPGLLGSPYYYSPAARGAAPPAAATAYDRH 1205
>ref|NM_013951.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8B,
mRNA
Length = 1183
Score = 493 bits (1269), Expect = e-137
Identities = 250/388 (64%), Positives = 293/388 (75%), Gaps = 2/388 (0%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 8 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 187
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 188 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 367
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 368 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 547
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 548 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 727
Query: 245 FERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
FER YP+ + + H K EQG Y LP L LD+ K++L T +N LG N+S QTYPV
Sbjct: 728 FERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPV 901
Query: 305 VTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFS 364
V GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAWRF
Sbjct: 902 VAGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP 1081
Query: 365 NPALLSSPYYYSATSRGSAPPTAAAAYD 392
N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1082NSSLLSSPYYYSSTSRPSAPPTTATAFD 1165
>gb|AF072548.1|AF072548 Danio rerio transcription factor (Pax5) mRNA, partial cds
Length = 1110
Score = 439 bits (1129), Expect = e-121
Identities = 236/401 (58%), Positives = 275/401 (67%), Gaps = 34/401 (8%)
Frame = +1
Query: 28 VNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSK 87
VNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI+PGVIGGSK
Sbjct: 1 VNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSK 180
Query: 88 PKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPF 147
PKVATPKVVDKIA+YKRQNPTMFAWEIRDRLLAE +CDND+VPSVSSINRIIRTKVQQP
Sbjct: 181 PKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAERVCDNDSVPSVSSINRIIRTKVQQP- 357
Query: 148 HPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVG-SYSINGILGIPR-SNGEKRKRDE 205
P SG A H + +D G SYSI+GILGI ++ KRKRD+
Sbjct: 358 ---PGQSG---AVSAHNLASTVAVTQVSAVTSDAAGSSYSISGILGISSPADASKRKRDD 519
Query: 206 DVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQG 265
+ + + NG + S D LRK +RG+ FT QQLE D
Sbjct: 520 PLQDSPLANGHNHSGRDFLRKQMRGELFTPQQLETSD----------------------- 630
Query: 266 NEYS-LPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPP 324
YS + +L GL+E+K+SL+ +LG+ V+GPQ+YP+V+GRD+ASTTLPGYPPHVPP
Sbjct: 631 --YSAMASLAGGLEEMKNSLANQTGAELGSTVAGPQSYPLVSGRDLASTTLPGYPPHVPP 804
Query: 325 TGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALL--------------- 369
TGQGSY T +L GMVPG +FSG+PYSHPQY+TYNE+WRF+NP+LL
Sbjct: 805 TGQGSYSTPSLTGMVPGGDFSGSPYSHPQYSTYNESWRFANPSLLVFQQEYGSLLGSERA 984
Query: 370 --------------SSPYYYSATSR--GSAPPTAAAAYDRH 394
SPYYYSA +R G+A A+AYDRH
Sbjct: 985 ASSGLFPGQTPQPTGSPYYYSAATRGAGTAATATASAYDRH 1107
>ref|NM_003466.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8A,
mRNA
Length = 1372
Score = 439 bits (1128), Expect = e-121
Identities = 246/451 (54%), Positives = 290/451 (63%), Gaps = 65/451 (14%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 8 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 187
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 188 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 367
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 368 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 547
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 548 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 727
Query: 245 FERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
FER YP+ + + H K EQG Y LP L LD+ K++L T +N LG N+S QTYPV
Sbjct: 728 FERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPV 901
Query: 305 V------------TGRDMASTTLP----------------GYPPH--------------- 321
V T +S++ P G PP
Sbjct: 902 VADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTG 1081
Query: 322 ----------------VPP----TGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAW 361
PP +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAW
Sbjct: 1082QALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAW 1261
Query: 362 RFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
RF N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1262RFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 1354
>gb|L19606.1|HUMPAX8A Human paired box homeotic protein (PAX8) mRNA, complete cds
Length = 1372
Score = 439 bits (1128), Expect = e-121
Identities = 246/451 (54%), Positives = 290/451 (63%), Gaps = 65/451 (14%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 8 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 187
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 188 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 367
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 368 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 547
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 548 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 727
Query: 245 FERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
FER YP+ + + H K EQG Y LP L LD+ K++L T +N LG N+S QTYPV
Sbjct: 728 FERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPV 901
Query: 305 V------------TGRDMASTTLP----------------GYPPH--------------- 321
V T +S++ P G PP
Sbjct: 902 VADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTG 1081
Query: 322 ----------------VPP----TGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAW 361
PP +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAW
Sbjct: 1082QALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAW 1261
Query: 362 RFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
RF N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1262RFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 1354
>gb|BC001060.1|BC001060 Homo sapiens, paired box gene 8, clone MGC:2141 IMAGE:2963877,
mRNA, complete cds
Length = 2707
Score = 439 bits (1128), Expect = e-121
Identities = 246/451 (54%), Positives = 290/451 (63%), Gaps = 65/451 (14%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 164 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 343
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 344 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 523
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 524 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 703
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 704 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 883
Query: 245 FERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
FER YP+ + + H K EQG Y LP L LD+ K++L T +N LG N+S QTYPV
Sbjct: 884 FERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPV 1057
Query: 305 V------------TGRDMASTTLP----------------GYPPH--------------- 321
V T +S++ P G PP
Sbjct: 1058VADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTG 1237
Query: 322 ----------------VPP----TGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAW 361
PP +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAW
Sbjct: 1238QALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAW 1417
Query: 362 RFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
RF N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1418RFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 1510
>emb|X69699.1|HSPAX8A H.sapiens Pax8 mRNA
Length = 2711
Score = 436 bits (1121), Expect = e-120
Identities = 245/451 (54%), Positives = 289/451 (63%), Gaps = 65/451 (14%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 158 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 337
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 338 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 517
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 518 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 697
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 698 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 877
Query: 245 FERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
FER YP+ + + H K EQG Y LP L LD+ K++L T +N LG N+S QTYPV
Sbjct: 878 FERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPV 1051
Query: 305 V------------TGRDMASTTLP----------------GYPPH--------------- 321
V T +S++ P G PP
Sbjct: 1052VADPHSPLAIKQETPEVSSSSSTPCSLSSSALLDLQQVGSGVPPFNAFPHAASVYGQFTG 1231
Query: 322 ----------------VPP----TGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAW 361
PP +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAW
Sbjct: 1232QALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAW 1411
Query: 362 RFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
F N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1412GFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 1504
>ref|XM_096020.1| Homo sapiens paired box gene 2 (PAX2), mRNA
Length = 2458
Score = 434 bits (1115), Expect = e-120
Identities = 210/236 (88%), Positives = 213/236 (89%)
Frame = +2
Query: 137 RIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 196
RIIRTKVQQPFHPTPDG+GTGV APGHTI NDPVGSYSINGILGIPRS
Sbjct: 2 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRS 181
Query: 197 NGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQT 256
NGEKRKRDEDVSEGSVPNGDSQS VDSLRKHLR DTFTQQQLEALDRVFERPSYPDVFQ
Sbjct: 182 NGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQA 361
Query: 257 SEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLP 316
SEHIKSEQGNEYSLPALTPGLDEVKSSLS S NP+LG+NVSG QTYPVVTGRDMASTTLP
Sbjct: 362 SEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLP 541
Query: 317 GYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSP 372
GYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT YNEAWRFSNPALL P
Sbjct: 542 GYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLMPP 709
>ref|XM_071372.1| Homo sapiens paired box gene 2 (PAX2), mRNA
Length = 2458
Score = 434 bits (1115), Expect = e-120
Identities = 210/236 (88%), Positives = 213/236 (89%)
Frame = +2
Query: 137 RIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 196
RIIRTKVQQPFHPTPDG+GTGV APGHTI NDPVGSYSINGILGIPRS
Sbjct: 2 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRS 181
Query: 197 NGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQT 256
NGEKRKRDEDVSEGSVPNGDSQS VDSLRKHLR DTFTQQQLEALDRVFERPSYPDVFQ
Sbjct: 182 NGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQA 361
Query: 257 SEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLP 316
SEHIKSEQGNEYSLPALTPGLDEVKSSLS S NP+LG+NVSG QTYPVVTGRDMASTTLP
Sbjct: 362 SEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLP 541
Query: 317 GYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSP 372
GYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT YNEAWRFSNPALL P
Sbjct: 542 GYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLMPP 709
>gb|AF411466.1|AF411466 Petromyzon marinus transcription factor Pax2 mRNA, partial cds
Length = 1551
Score = 426 bits (1096), Expect = e-117
Identities = 227/333 (68%), Positives = 253/333 (75%), Gaps = 5/333 (1%)
Frame = +1
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAE +CD
Sbjct: 1 KILGRYYETGSIRPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAERVCDT 180
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPV-GS 184
DTVPSVSSINRIIRTKVQQPFH P+ D G V++ H I ND V S
Sbjct: 181 DTVPSVSSINRIIRTKVQQPFHLPSQDSPGQQVSSSSHGISSSSAVTPVSSAPNDSVASS 360
Query: 185 YSINGILGIPRSNGE-KRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDR 243
YSINGILGIPRSNG+ KRKRD+DV V GDS S D++RK LR D F QQQLEAL+R
Sbjct: 361 YSINGILGIPRSNGDGKRKRDDDV-VSPVQAGDSPVSGDAVRKQLRSDAFAQQQLEALER 537
Query: 244 VFERPSYPDVFQTSEHIKSEQGNEY-SLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTY 302
FER Y +VF +EH K EQG EY L AL G+D+VKS + P++ Q+Y
Sbjct: 538 AFERQHYAEVF--AEHGKPEQGTEYPPLSALGAGMDDVKSGMVGPGTPEMTA-----QSY 696
Query: 303 PVVTGRDMA-STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAW 361
P+VTGR++ STTLPGYPPHVPPTGQGSY +S+LAGMVPGSEF GNPYSHPQYT YN+AW
Sbjct: 697 PLVTGRELGNSTTLPGYPPHVPPTGQGSYSSSSLAGMVPGSEFPGNPYSHPQYTAYNDAW 876
Query: 362 RFSNPALLSSPYYYSATSRGSAPPTAAAAYDRH 394
RF+NP LLSSPYYYSAT+RG PT A YDRH
Sbjct: 877 RFTNPGLLSSPYYYSATARG---PTTATGYDRH 966
>ref|NM_011040.1| Mus musculus paired box gene 8 (Pax8), mRNA
Length = 2514
Score = 401 bits (1031), Expect = e-110
Identities = 243/458 (53%), Positives = 284/458 (61%), Gaps = 72/458 (15%)
Frame = +3
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 153 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 332
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 333 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 512
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 513 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 692
Query: 185 YSINGILGIPR-SNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDR 243
YSING+LGI + N KRK D+ + + DSQSS RKHLR DTF+Q LEAL+
Sbjct: 693 YSINGLLGIAQPGNDNKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDTFSQHHLEALEC 872
Query: 244 VFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYP 303
FER YP+ + + H K EQG Y LP L LD+ K++L TS+N LG N+S QTYP
Sbjct: 873 PFERQHYPEAYASPSHTKGEQG-LYPLPLLNSALDDGKATL-TSSNTPLGRNLSTHQTYP 1046
Query: 304 VV------------TGRDMASTTLP----------------GYP--PHVPP--------- 324
VV T +S++ P G P VPP
Sbjct: 1047VVADPHSPFAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVPPFNAFPHAAS 1226
Query: 325 -----TGQG-----SYPTSTLAGMVPGSEFSG---------------NPYSHPQYT---- 355
TGQ TL G P SG + YS Y+
Sbjct: 1227VYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYSHTPY 1406
Query: 356 -TYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
+Y+EAWRF N +LLSSPYYYS+TSR SAPPT+A A+D
Sbjct: 1407SSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTSATAFD 1520
>emb|X57487.1|MMPAX8 M.musculus mRNA Pax8
Length = 2514
Score = 401 bits (1031), Expect = e-110
Identities = 243/458 (53%), Positives = 284/458 (61%), Gaps = 72/458 (15%)
Frame = +3
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 153 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 332
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 333 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 512
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 513 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 692
Query: 185 YSINGILGIPR-SNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDR 243
YSING+LGI + N KRK D+ + + DSQSS RKHLR DTF+Q LEAL+
Sbjct: 693 YSINGLLGIAQPGNDNKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDTFSQHHLEALEC 872
Query: 244 VFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYP 303
FER YP+ + + H K EQG Y LP L LD+ K++L TS+N LG N+S QTYP
Sbjct: 873 PFERQHYPEAYASPSHTKGEQG-LYPLPLLNSALDDGKATL-TSSNTPLGRNLSTHQTYP 1046
Query: 304 VV------------TGRDMASTTLP----------------GYP--PHVPP--------- 324
VV T +S++ P G P VPP
Sbjct: 1047VVADPHSPFAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVPPFNAFPHAAS 1226
Query: 325 -----TGQG-----SYPTSTLAGMVPGSEFSG---------------NPYSHPQYT---- 355
TGQ TL G P SG + YS Y+
Sbjct: 1227VYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYSHTPY 1406
Query: 356 -TYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
+Y+EAWRF N +LLSSPYYYS+TSR SAPPT+A A+D
Sbjct: 1407SSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTSATAFD 1520
>gb|BC020526.1|BC020526 Mus musculus, paired box gene 8, clone MGC:18390 IMAGE:4239835,
mRNA, complete cds
Length = 2565
Score = 401 bits (1031), Expect = e-110
Identities = 243/458 (53%), Positives = 284/458 (61%), Gaps = 72/458 (15%)
Frame = +1
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 163 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 342
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 343 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 522
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 523 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 702
Query: 185 YSINGILGIPR-SNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDR 243
YSING+LGI + N KRK D+ + + DSQSS RKHLR DTF+Q LEAL+
Sbjct: 703 YSINGLLGIAQPGNDNKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDTFSQHHLEALEC 882
Query: 244 VFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYP 303
FER YP+ + + H K EQG Y LP L LD+ K++L TS+N LG N+S QTYP
Sbjct: 883 PFERQHYPEAYASPSHTKGEQG-LYPLPLLNSALDDGKATL-TSSNTPLGRNLSTHQTYP 1056
Query: 304 VV------------TGRDMASTTLP----------------GYP--PHVPP--------- 324
VV T +S++ P G P VPP
Sbjct: 1057VVADPHSPFAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVPPFNAFPHAAS 1236
Query: 325 -----TGQG-----SYPTSTLAGMVPGSEFSG---------------NPYSHPQYT---- 355
TGQ TL G P SG + YS Y+
Sbjct: 1237VYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYSHTPY 1416
Query: 356 -TYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
+Y+EAWRF N +LLSSPYYYS+TSR SAPPT+A A+D
Sbjct: 1417SSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTSATAFD 1530
>emb|X83591.1|CCPAX8A C.canis Pax8a mRNA
Length = 1380
Score = 395 bits (1014), Expect = e-108
Identities = 238/458 (51%), Positives = 281/458 (60%), Gaps = 74/458 (16%)
Frame = +1
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 4 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 183
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 184 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 363
Query: 129 VPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS-YS 186
VPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS YS
Sbjct: 364 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 543
Query: 187 INGILGIPRSNGE-KRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVF 245
ING+LGI + + KRK D+ + + DSQSS RKHLR D F+Q LE L+ F
Sbjct: 544 INGLLGIAQPGSDSKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 723
Query: 246 ERPSYPDVFQTSEHIKSEQGNEYSLPAL-TPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
ER YP+ + + H K EQG Y LP L + LD+ K++L T +N LG N+S QTYPV
Sbjct: 724 ERQHYPEAYASPSHTKGEQG-LYPLPLLNSAALDDGKATL-TPSNTPLGRNLSTHQTYPV 897
Query: 305 V------------TGRDMASTTLP-----------------GYP--PHVPP--------- 324
V T +S++ P G P VPP
Sbjct: 898 VADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGGAGVPAGASVPPFNAFPHAAS 1077
Query: 325 -----TGQG-----------------SYPTS---TLAGMVPGSEFSGNPYS-----HPQY 354
TGQ PTS + A +G+ YS H Y
Sbjct: 1078VYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPY 1257
Query: 355 TTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
++Y EAWRF N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1258SSYGEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 1371
>emb|AJ000667.1|XLAJ667 Xenopus laevis mRNA for paired box protein, clone pBS.5*
Length = 1021
Score = 391 bits (1004), Expect = e-107
Identities = 191/215 (88%), Positives = 195/215 (89%), Gaps = 2/215 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 180
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 181 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 360
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGT V PGHT+ ND
Sbjct: 361 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTLVPSTASPPVSSASND 540
Query: 181 PVGSYSINGILGIPRSNGEKRKRDE--DVSEGSVP 213
PVGSYSINGILGIPRSNGEKRKRDE D+S ++P
Sbjct: 541 PVGSYSINGILGIPRSNGEKRKRDEGRDMSSTTLP 645
Score = 172 bits (435), Expect = 6e-41
Identities = 92/146 (63%), Positives = 94/146 (64%), Gaps = 36/146 (24%)
Frame = +1
Query: 285 STSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPG--- 341
S S N LG S + GRDM+STTLPGYPPHVPPTGQGSYPTSTLAGMVPG
Sbjct: 550 SYSINGILGIPRSNGEKRKRDEGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGTNV 729
Query: 342 ---------------------------------SEFSGNPYSHPQYTTYNEAWRFSNPAL 368
SEFSGNPYSHPQYTTYNEAWRFSNPAL
Sbjct: 730 SVHHSVQPVECCSCLSSSKPCLFHCRTGSGFLGSEFSGNPYSHPQYTTYNEAWRFSNPAL 909
Query: 369 LSSPYYYSATSRGSAPPTAAAAYDRH 394
LSSPYYYSATSRGSAPPTAA AYDRH
Sbjct: 910 LSSPYYYSATSRGSAPPTAATAYDRH 987
>ref|NM_031141.1| Rattus norvegicus Pax-8 protein (Pax8), mRNA
Length = 1693
Score = 387 bits (995), Expect = e-106
Identities = 236/459 (51%), Positives = 282/459 (61%), Gaps = 73/459 (15%)
Frame = +1
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 43 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 222
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 223 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 402
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 403 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 582
Query: 185 YSINGILGIPRSNGE-KRKRDEDVSEGSVP-NGDSQSSVDSLRKHLRGDTFTQQQLEALD 242
YSI+G+LGI ++ + R R +D +G + DSQSS RKHLR DTF Q LE L+
Sbjct: 583 YSIHGLLGIAQAGSDTHRGRCDDSDQGQCRLSIDSQSSSSGPRKHLRTDTFGQHHLEPLE 762
Query: 243 RVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTY 302
FER YP+ + + H K EQG Y LP L LD+ K++L T +N LG N+S QTY
Sbjct: 763 CPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTY 936
Query: 303 PVV------------TGRDMASTTLP----------------GYP--PHVPPTGQGSYPT 332
PVV T +S++ P G P VPP S+
Sbjct: 937 PVVADPHSPYAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVPPFNAFSHAA 1116
Query: 333 S-------------------TLAGMVPGSEFSG---------------NPYSHPQYT--- 355
S +L G P SG + YS Y+
Sbjct: 1117SVYGQFTGQALLSGREMVGPSLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYSHTP 1296
Query: 356 --TYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
+Y+EAWRF N +LLSSPYYYS+T+R SAPPT+A A+D
Sbjct: 1297YASYSEAWRFPNSSLLSSPYYYSSTTRPSAPPTSATAFD 1413
>emb|X94246.1|RNPAX8 R.norvegicus mRNA for Pax-8 protein
Length = 1693
Score = 387 bits (995), Expect = e-106
Identities = 236/459 (51%), Positives = 282/459 (61%), Gaps = 73/459 (15%)
Frame = +1
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 43 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 222
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 223 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 402
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 403 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 582
Query: 185 YSINGILGIPRSNGE-KRKRDEDVSEGSVP-NGDSQSSVDSLRKHLRGDTFTQQQLEALD 242
YSI+G+LGI ++ + R R +D +G + DSQSS RKHLR DTF Q LE L+
Sbjct: 583 YSIHGLLGIAQAGSDTHRGRCDDSDQGQCRLSIDSQSSSSGPRKHLRTDTFGQHHLEPLE 762
Query: 243 RVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTY 302
FER YP+ + + H K EQG Y LP L LD+ K++L T +N LG N+S QTY
Sbjct: 763 CPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTY 936
Query: 303 PVV------------TGRDMASTTLP----------------GYP--PHVPPTGQGSYPT 332
PVV T +S++ P G P VPP S+
Sbjct: 937 PVVADPHSPYAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVPPFNAFSHAA 1116
Query: 333 S-------------------TLAGMVPGSEFSG---------------NPYSHPQYT--- 355
S +L G P SG + YS Y+
Sbjct: 1117SVYGQFTGQALLSGREMVGPSLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYSHTP 1296
Query: 356 --TYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
+Y+EAWRF N +LLSSPYYYS+T+R SAPPT+A A+D
Sbjct: 1297YASYSEAWRFPNSSLLSSPYYYSSTTRPSAPPTSATAFD 1413
>emb|AJ000668.1|XLAJ668 Xenopus laevis mRNA for paired box protein, clone pBS.28*
Length = 904
Score = 371 bits (952), Expect = e-101
Identities = 186/215 (86%), Positives = 192/215 (88%), Gaps = 2/215 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD GT V+ PGHT+ ND
Sbjct: 358 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD--GTPVSTPGHTLVPSTASPPVSSASND 531
Query: 181 PVGSYSINGILGIPRSNGEKRKRDE--DVSEGSVP 213
PVGSYSINGILGIPRSNGEKRKRDE D+S ++P
Sbjct: 532 PVGSYSINGILGIPRSNGEKRKRDEGRDMSSTTLP 636
Score = 191 bits (484), Expect = 1e-46
Identities = 111/208 (53%), Positives = 126/208 (60%), Gaps = 23/208 (11%)
Frame = +1
Query: 210 GSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVF-----ERPSYPDVFQTSEHIKSEQ 264
GS P + VD + + R + T E DR+ + + P V + I+++
Sbjct: 250 GSKPKVATPKVVDKIADYKRQNP-TMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKV 426
Query: 265 GNEY-----SLPALTPGLDEVKSSLST-------------SANPDLGTNVSGPQTYPVVT 306
+ P TPG V S+ S S N LG S +
Sbjct: 427 QQPFHPTPDGTPVSTPGHTLVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDE 606
Query: 307 GRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNP 366
GRDM+STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNP
Sbjct: 607 GRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNP 786
Query: 367 ALLSSPYYYSATSRGSAPPTAAAAYDRH 394
ALLSSPYYYSATSRGSAPPTAA AYDRH
Sbjct: 787 ALLSSPYYYSATSRGSAPPTAATAYDRH 870
>ref|NM_013952.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8C,
mRNA
Length = 1451
Score = 369 bits (947), Expect = e-100
Identities = 214/394 (54%), Positives = 256/394 (64%), Gaps = 10/394 (2%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 158 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 337
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 338 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 517
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 518 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 697
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 698 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 877
Query: 245 FERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
FER YP+ + + H K EQG Y LP L LD+ K++L T +N LG N+S QTYPV
Sbjct: 878 FERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPV 1051
Query: 305 VTGRD--MASTTLPGYPPHVP-PTGQGSYPTSTLAGMVPGSEFSGN--PYSHPQYTTYNE 359
V + S + PG P +P P +S G + G P +HP T
Sbjct: 1052VAAPPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHP---TSPP 1222
Query: 360 AWRFSNPALLSSPYYYSATSRG---SAPPTAAAA 390
A R + P L S ++ + + PPT A
Sbjct: 1223ADRAAMPPLPSQAWWQEVNTLAMPMATPPTPPTA 1324
Score = 131 bits (330), Expect = 9e-29
Identities = 57/89 (64%), Positives = 72/89 (80%)
Frame = +1
Query: 304 VVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRF 363
+++GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAW F
Sbjct: 1159 LLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWGF 1338
Query: 364 SNPALLSSPYYYSATSRGSAPPTAAAAYD 392
N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1339 PNSSLLSSPYYYSSTSRPSAPPTTATAFD 1425
>gb|S77904.1|S77904 Pax (PAX8c)=paired box {alternatively spliced} [human, thyroid,
kidney and Wilms' tumors, mRNA, 1451 nt]
Length = 1451
Score = 369 bits (947), Expect = e-100
Identities = 214/394 (54%), Positives = 256/394 (64%), Gaps = 10/394 (2%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 158 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 337
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 338 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 517
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 518 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 697
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 698 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 877
Query: 245 FERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
FER YP+ + + H K EQG Y LP L LD+ K++L T +N LG N+S QTYPV
Sbjct: 878 FERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPV 1051
Query: 305 VTGRD--MASTTLPGYPPHVP-PTGQGSYPTSTLAGMVPGSEFSGN--PYSHPQYTTYNE 359
V + S + PG P +P P +S G + G P +HP T
Sbjct: 1052VAAPPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHP---TSPP 1222
Query: 360 AWRFSNPALLSSPYYYSATSRG---SAPPTAAAA 390
A R + P L S ++ + + PPT A
Sbjct: 1223ADRAAMPPLPSQAWWQEVNTLAMPMATPPTPPTA 1324
Score = 131 bits (330), Expect = 9e-29
Identities = 57/89 (64%), Positives = 72/89 (80%)
Frame = +1
Query: 304 VVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRF 363
+++GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAW F
Sbjct: 1159 LLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWGF 1338
Query: 364 SNPALLSSPYYYSATSRGSAPPTAAAAYD 392
N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1339 PNSSLLSSPYYYSSTSRPSAPPTTATAFD 1425
>gb|AF179301.1|AF179301 Xenopus laevis Pax-8 DNA-binding transcription factor (Pax-8) mRNA,
complete cds
Length = 1398
Score = 369 bits (947), Expect = e-100
Identities = 217/448 (48%), Positives = 268/448 (59%), Gaps = 64/448 (14%)
Frame = +1
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P S + GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 55 PASNFNIGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 234
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLL +G+CDNDT
Sbjct: 235 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLTDGVCDNDT 414
Query: 129 VPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS-YSI 187
VPSVSSINRIIRTKVQQ F+ P S +PG T+ +D +GS YSI
Sbjct: 415 VPSVSSINRIIRTKVQQLFN-LPMESCVKSLSPGQTLIPSSTVTPPESPHSDSLGSTYSI 591
Query: 188 NGILGIPRSNGE-KRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFE 246
+G+LGI + + + KRK D+ E + DSQ SV RK LR + + L+AL+ F+
Sbjct: 592 SGLLGITQPSADGKRKLDDSDQESCRLSIDSQGSVGISRKQLRTEAYGHHPLDALECHFQ 771
Query: 247 RPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVV- 305
R +P+ + +S H K+EQ Y+LP L LD+ KSSL TS N +G N+S Q Y +
Sbjct: 772 RQHFPESYSSSTHSKTEQA-LYTLPLLNISLDDGKSSL-TSTNTTIGRNLSTHQGYSALS 945
Query: 306 -------------------TGRDMASTTL------------PGYPPHVPPTGQGSYPT-- 332
T + S T P + P+ G + +
Sbjct: 946 EFTAFSIKQEASDSSSASSTPSSLCSPTFLDLQPINSGCSAPSFSAFSHPSVYGQFTSHV 1125
Query: 333 --------STLAGMVP--------------------GSEFSGNPYSHPQYTTYNEAWRFS 364
+TL G P G ++S N YSH Y Y ++WRF
Sbjct: 1126ASGRDVVGATLPGYPPHIPSGQGNYASSAIAGMVAAGGDYSANAYSHGAYAAYGDSWRFP 1305
Query: 365 NPALLSSPYYYSATSRGSAPPTAAAAYD 392
+ +LL SPYYYS+ +R + PPT A AYD
Sbjct: 1306SSSLLGSPYYYSSGTRTAPPPTTAGAYD 1389
>gb|AF067535.1|AF067535 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 879
Score = 365 bits (937), Expect = 4e-99
Identities = 178/205 (86%), Positives = 186/205 (89%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDIHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXND 180
EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG+GT ++ GHTI ND
Sbjct: 358 EGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASND 537
Query: 181 PVGSYSINGILGIPRSNGEKRKRDE 205
PVGSYSINGILGIPRSNGEKRKRD+
Sbjct: 538 PVGSYSINGILGIPRSNGEKRKRDD 612
Score = 186 bits (471), Expect = 4e-45
Identities = 108/194 (55%), Positives = 123/194 (62%), Gaps = 2/194 (1%)
Frame = +1
Query: 203 RDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKS 262
RD ++EG N D+ SV S+ + +R T QQ P +P T + S
Sbjct: 340 RDRLLAEGVCDN-DTVPSVSSINRIIR--TKVQQ-----------PFHPSSDGTGTPL-S 474
Query: 263 EQGNEYSLPALTPGLDEVKSSL--STSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPP 320
G+ +P + + S S N LG S + GR+MASTTLPGYPP
Sbjct: 475 TAGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDDGREMASTTLPGYPP 654
Query: 321 HVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSR 380
HVPPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSA SR
Sbjct: 655 HVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSAASR 834
Query: 381 GSAPPTAAAAYDRH 394
GS PPTAA AYDRH
Sbjct: 835 GSGPPTAATAYDRH 876
>gb|AF053762.1|AF053762 Branchiostoma floridae paired box protein Pax-2 alpha isoform mRNA,
complete cds
Length = 1658
Score = 361 bits (927), Expect = 6e-98
Identities = 230/437 (52%), Positives = 263/437 (59%), Gaps = 62/437 (14%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGV+VNGRPLPDVVR RIVELAHQGVRPCDISRQLRVSHGCVSKIL RYYET
Sbjct: 123 GHGGVNQLGGVYVNGRPLPDVVRHRIVELAHQGVRPCDISRQLRVSHGCVSKILRRYYET 302
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI
Sbjct: 303 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 482
Query: 136 NRIIRTKV-----QQPFHP--TPDGSGT----GVAAPGHTIXXXXXXXXXXXXXNDPVGS 184
NRI+R K Q P P +P G+GT G A G + S
Sbjct: 483 NRIVRNKAAEKAKQSPHSPQQSPQGAGTPNSVGPMASGPVATSASNNAPGSDSAQNG-SS 659
Query: 185 YSINGILGIPRSNGEKRKRDED------VSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQL 238
YSINGILGI SN EK KR+ D + G + NGD + + TFT QL
Sbjct: 660 YSINGILGIHHSNPEKVKREGDRETGPAMENGMIVNGDPEQ---------KRSTFTPDQL 812
Query: 239 EALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLS--------TSANP 290
EAL++ F R YP T + N+ L + +VK S+S T P
Sbjct: 813 EALEQAFNRGHYP----TDPFNRDNMSNKVDLSQTR--VQDVKPSISCSTTSVAMTDTAP 974
Query: 291 DLGTN-----VSGPQTYPVVTGRDM--ASTTLPGYPPHVPP---TGQGSYPTSTLA-GMV 339
+ T V G V GRDM ++TLPGYPPH PP +GQ YP++T+A G V
Sbjct: 975 HVPTGHYPVAVPGLPQSAVTPGRDMRDMNSTLPGYPPHAPPSNLSGQTGYPSNTMATGQV 1154
Query: 340 P----------------------GSEFSGNPYSHPQYTT-YNEAW---RFSNPALLSSPY 373
P S+FSG PY+H QY++ YN+AW R+ P +LSS
Sbjct: 1155PPIVLPSASNSYSSASTMSGSDYSSQFSGVPYTHAQYSSHYNDAWNQMRYPTPGILSSYP 1334
Query: 374 YYSATSRGSAPPTAAAA 390
YYS +SRG P TAAAA
Sbjct: 1335YYS-SSRG--PATAAAA 1376
>emb|X83592.1|CCPAX8G C.canis Pax8g mRNA
Length = 1242
Score = 356 bits (914), Expect = 2e-96
Identities = 194/319 (60%), Positives = 228/319 (70%), Gaps = 7/319 (2%)
Frame = +1
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 4 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 183
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 184 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 363
Query: 129 VPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS-YS 186
VPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS YS
Sbjct: 364 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 543
Query: 187 INGILGIPRSNGE-KRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVF 245
ING+LGI + + KRK D+ + + DSQSS RKHLR D F+Q LE L+ F
Sbjct: 544 INGLLGIAQPGSDSKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 723
Query: 246 ERPSYPDVFQTSEHIKSEQGNEYSLPAL-TPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
ER YP+ + + H K EQG Y LP L + LD+ K++L T +N LG N+S QTYPV
Sbjct: 724 ERQHYPEAYASPSHTKGEQG-LYPLPLLNSAALDDGKATL-TPSNTPLGRNLSTHQTYPV 897
Query: 305 VTGRDM---ASTTLPGYPP 320
V + + PG P
Sbjct: 898 VAAPPFWICSKSAAPGSQP 954
Score = 78.6 bits (192), Expect = 9e-13
Identities = 40/89 (44%), Positives = 50/89 (55%)
Frame = +3
Query: 304 VVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRF 363
+++GR+M TLPGYPPH+P +GQGSY +S +AGMV G
Sbjct: 1026 LLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAG---------------------- 1139
Query: 364 SNPALLSSPYYYSATSRGSAPPTAAAAYD 392
SPYYYS+TSR SAPPT A A+D
Sbjct: 1140 -------SPYYYSSTSRPSAPPTTATAFD 1205
>ref|NM_013953.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8D,
mRNA
Length = 1220
Score = 342 bits (878), Expect = 3e-92
Identities = 185/329 (56%), Positives = 221/329 (66%), Gaps = 3/329 (0%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 158 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 337
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 338 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 517
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 518 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 697
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 698 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 877
Query: 245 FERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
FER YP+ + + H K EQG + P P +A P L +
Sbjct: 878 FERQHYPEAYASPSHTKGEQGERWWGPR-CPDTHPTSPPADRAAMPPLPSQ--------- 1027
Query: 305 VTGRDMASTTLPGYPPHVPPTGQ-GSYPT 332
+++ + +P P PPT + G+ PT
Sbjct: 1028AWWQEVNTLAMPMATPPTPPTARPGASPT 1114
Score = 132 bits (333), Expect = 4e-29
Identities = 59/94 (62%), Positives = 72/94 (75%)
Frame = +1
Query: 299 PQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYN 358
PQ + GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H Y++Y+
Sbjct: 913 PQPHQRRAGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYS 1092
Query: 359 EAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
EAW F N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1093 EAWGFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 1194
>gb|S77905.1|S77905 Pax (PAX8d)=paired box {alternatively spliced} [human, thyroid,
kidney and Wilms' tumors, mRNA, 1220 nt]
Length = 1220
Score = 342 bits (878), Expect = 3e-92
Identities = 185/329 (56%), Positives = 221/329 (66%), Gaps = 3/329 (0%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 158 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 337
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 338 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 517
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 518 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 697
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 698 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 877
Query: 245 FERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPV 304
FER YP+ + + H K EQG + P P +A P L +
Sbjct: 878 FERQHYPEAYASPSHTKGEQGERWWGPR-CPDTHPTSPPADRAAMPPLPSQ--------- 1027
Query: 305 VTGRDMASTTLPGYPPHVPPTGQ-GSYPT 332
+++ + +P P PPT + G+ PT
Sbjct: 1028AWWQEVNTLAMPMATPPTPPTARPGASPT 1114
Score = 132 bits (333), Expect = 4e-29
Identities = 59/94 (62%), Positives = 72/94 (75%)
Frame = +1
Query: 299 PQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYN 358
PQ + GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H Y++Y+
Sbjct: 913 PQPHQRRAGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYS 1092
Query: 359 EAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
EAW F N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 1093 EAWGFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 1194
>gb|AF072549.1|AF072549 Danio rerio transcription factor (Pax8) mRNA, partial cds
Length = 1290
Score = 342 bits (876), Expect = 5e-92
Identities = 212/440 (48%), Positives = 252/440 (57%), Gaps = 75/440 (17%)
Frame = +1
Query: 28 VNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSK 87
VNGRPLP+V+RQRIV++AHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSK
Sbjct: 1 VNGRPLPEVIRQRIVDMAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSK 180
Query: 88 PKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPF 147
PKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAEG+CD DTVPSVSSINRIIRTKVQQPF
Sbjct: 181 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDGDTVPSVSSINRIIRTKVQQPF 360
Query: 148 HPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIPRSNGE-KRKRDE 205
+ D G +PGHT+ +D +GS YSING+LGI ++ + KR D+
Sbjct: 361 NLPLDTKG---LSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGITQTTADGKRGHDD 531
Query: 206 DVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQG 265
E + DSQ S RK LR + F ALD FER D F S K+EQ
Sbjct: 532 SDQESCRHSVDSQGSGGGARKQLRTEHFPS---AALDCGFERHYSSDSFSQS---KAEQ- 690
Query: 266 NEYSLPALTPGLDEVKSSLSTSAN--------------------------PDLG------ 293
Y L + PGLDE K + S S N P++
Sbjct: 691 QLYPLALMNPGLDEGKGASSISRNLAAHQGYAVVTEALQPLPLCLKQEVSPEVNSLSPSP 870
Query: 294 -----------TNVSGPQTYPVVT--GRDMASTTLPGYPPHVPPTGQGSYP--------- 331
+ +S P + PV + G S + H P GQ S P
Sbjct: 871 HIISGSAFLDLSAISSPSSAPVASSCGSAHLSHGFSSFSHHAPVHGQFSSPSLMAGREVA 1050
Query: 332 -------------------TSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSSP 372
+ST+AGMV E++G YSHP Y++Y+EAWRF+N ++L SP
Sbjct: 1051SSMLPGYPPHIPTAQTGFSSSTIAGMVSAPEYTGQSYSHPAYSSYSEAWRFTNSSILGSP 1230
Query: 373 YYYSATSRGSAPPTAAAAYD 392
YYYS +R PP A A+D
Sbjct: 1231YYYSFANR---PPPPAGAFD 1281
>ref|NM_013992.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8E,
mRNA
Length = 1118
Score = 340 bits (872), Expect = 1e-91
Identities = 175/272 (64%), Positives = 203/272 (74%), Gaps = 3/272 (1%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 158 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 337
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 338 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 517
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 518 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 697
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 698 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 877
Query: 245 FERPSYPDVFQTSEHIKSEQG-NEYSLPALTP 275
FER YP+ + + H K EQ N ++P TP
Sbjct: 878 FERQHYPEAYASPSHTKGEQEVNTLAMPMATP 973
Score = 80.5 bits (197), Expect = 2e-13
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +1
Query: 341 GSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
GSE+SGN Y H Y++Y+EAW F N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 937 GSEYSGNAYGHTPYSSYSEAWGFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 1092
>gb|S77906.2|S77906 Pax (PAX8e)=paired box {alternatively spliced} [human, thyroid,
kidney and Wilms' tumors, mRNA Partial, 1031 nt]
Length = 1118
Score = 340 bits (872), Expect = 1e-91
Identities = 175/272 (64%), Positives = 203/272 (74%), Gaps = 3/272 (1%)
Frame = +2
Query: 7 ADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
A P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVS
Sbjct: 158 AMPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVS 337
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KILGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDN
Sbjct: 338 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 517
Query: 127 DTVPSVSSINRIIRTKVQQPFH-PTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS- 184
DTVPSVSSINRIIRTKVQQPF+ P T +PGHT+ +D +GS
Sbjct: 518 DTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGST 697
Query: 185 YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRV 244
YSING+LGI + +KRK D+ + + DSQSS RKHLR D F+Q LE L+
Sbjct: 698 YSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECP 877
Query: 245 FERPSYPDVFQTSEHIKSEQG-NEYSLPALTP 275
FER YP+ + + H K EQ N ++P TP
Sbjct: 878 FERQHYPEAYASPSHTKGEQEVNTLAMPMATP 973
Score = 80.5 bits (197), Expect = 2e-13
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +1
Query: 341 GSEFSGNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAAAYD 392
GSE+SGN Y H Y++Y+EAW F N +LLSSPYYYS+TSR SAPPT A A+D
Sbjct: 937 GSEYSGNAYGHTPYSSYSEAWGFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 1092
>emb|AJ000669.1|XLAJ669 Xenopus laevis mRNA for paired box protein, clone pBS.30*
Length = 790
Score = 324 bits (830), Expect = 1e-86
Identities = 157/165 (95%), Positives = 159/165 (96%)
Frame = +1
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 177
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSK+LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 178 SHGCVSKVLGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 357
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTI 165
GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGT V PGHT+
Sbjct: 358 VGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTL 492
Score = 189 bits (479), Expect = 5e-46
Identities = 86/88 (97%), Positives = 87/88 (98%)
Frame = +1
Query: 307 GRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNP 366
GRDM+STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNP
Sbjct: 493 GRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNP 672
Query: 367 ALLSSPYYYSATSRGSAPPTAAAAYDRH 394
ALLSSPYYYSATSRGSAPPTAA AYDRH
Sbjct: 673 ALLSSPYYYSATSRGSAPPTAATAYDRH 756
>gb|AF053763.1|AF053763 Branchiostoma floridae paired box protein Pax-2 beta isoform mRNA,
complete cds
Length = 2742
Score = 310 bits (793), Expect = 2e-82
Identities = 193/359 (53%), Positives = 215/359 (59%), Gaps = 18/359 (5%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGV+VNGRPLPDVVR RIVELAHQGVRPCDISRQLRVSHGCVSKIL RYYET
Sbjct: 123 GHGGVNQLGGVYVNGRPLPDVVRHRIVELAHQGVRPCDISRQLRVSHGCVSKILRRYYET 302
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI
Sbjct: 303 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 482
Query: 136 NRIIRTKV-----QQPFHP--TPDGSGT----GVAAPGHTIXXXXXXXXXXXXXNDPVGS 184
NRI+R K Q P P +P G+GT G A G + S
Sbjct: 483 NRIVRNKAAEKAKQSPHSPQQSPQGAGTPNSVGPMASGPVATSASNNAPGSDSAQNG-SS 659
Query: 185 YSINGILGIPRSNGEKRKRDED------VSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQL 238
YSINGILGI SN EK KR+ D + G + NGD + + TFT QL
Sbjct: 660 YSINGILGIHHSNPEKVKREGDRETGPAMENGMIVNGDPEQ---------KRSTFTPDQL 812
Query: 239 EALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSG 298
EAL++ F R YP T + N+ L + +VK S+S S T+V+
Sbjct: 813 EALEQAFNRGHYP----TDPFNRDNMSNKVDLSQTR--VQDVKPSISCST-----TSVAM 959
Query: 299 PQTYP-VVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTT 356
T P V TG YP VP T S + + PGS S P P TT
Sbjct: 960 TDTAPHVPTGH---------YPVAVPATTPPSASAPSNSASPPGSAKSSEPSPSPTATT 1109
>gb|AF016884.1|AF016884 Paracentrotus lividus paired box protein (suPax258) mRNAs, complete
cds
Length = 2506
Score = 285 bits (728), Expect = 7e-75
Identities = 183/390 (46%), Positives = 228/390 (57%), Gaps = 26/390 (6%)
Frame = +2
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MD H +A HGGVNQLGGVFVNGRPLPDVVRQRIV+LAH GVRPCDISRQLRV
Sbjct: 692 MDFHRRATLTHGACKSHGGVNQLGGVFVNGRPLPDVVRQRIVDLAHSGVRPCDISRQLRV 871
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSI+PGVIGGSKPKVATPKVV KIA+YKRQNPTMFAWEIRDRLLA
Sbjct: 872 SHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVSKIADYKRQNPTMFAWEIRDRLLA 1051
Query: 121 EGICDNDTVPSVSSINRIIRTKV--------QQPFHPTPDGSGTGVAAPGHTIXXXXXXX 172
EG+C+ D VPSVSSINRI+R K+ Q PT + + PG
Sbjct: 1052 EGVCEKDNVPSVSSINRIVRNKLGDKKLDEHQTGCLPTSGSPPSSLIHPG---------- 1201
Query: 173 XXXXXXNDPV---GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSV-DSLRKHL 228
DP SYSINGILGIP+ EKR + E +G D QS + + RK +
Sbjct: 1202 -------DPERTGSSYSINGILGIPKQ--EKRIKGELYPDGGPGQPDGQSVLAEEARKMM 1354
Query: 229 RGDT--FTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPG------LDEV 280
+ ++ F+ Q+EA+++ YPDV++ + I + + +P + L+
Sbjct: 1355 KTNSGAFSPHQIEAMEKACNPSLYPDVYR--KDIAQDGRGQVGMPISSASEYHHAHLEAQ 1528
Query: 281 KSSLSTSANPDLG--TNVSGPQTYPVVTGRDMASTTLPG-YPPHVPPTGQGSYPTSTLAG 337
+ TS G +++ Y +S ++ G PP V P G GSY S G
Sbjct: 1529 RHHAVTSGYHQSGQSRDMAPLHGYSASPQGGYSSGSVAGIVPPLVLPPGGGSYSHSGREG 1708
Query: 338 MVPGSEFSGNPYSHPQYTT---YNEAWRFS 364
S+FS + H Q++ YNE R++
Sbjct: 1709 EY-SSQFSQYNHPHAQFSVPGHYNEWQRYT 1795
>gb|AF241310.1|AF241310 Acropora millepora transcription factor PaxB (PaxB) mRNA, complete
cds
Length = 3677
Score = 257 bits (656), Expect = 1e-66
Identities = 142/256 (55%), Positives = 166/256 (64%), Gaps = 17/256 (6%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGG+FVNGRPLPDVVR RIV+LA GVRPCDISRQLRVSHGCVSKIL R+YET
Sbjct: 175 GHGGVNQLGGLFVNGRPLPDVVRSRIVDLAQSGVRPCDISRQLRVSHGCVSKILCRFYET 354
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVAT VV+KIAEYKR NPTMFAWEIRDRLL+EG+C D VPSVSSI
Sbjct: 355 GSIKPGVIGGSKPKVATGPVVNKIAEYKRNNPTMFAWEIRDRLLSEGVCSTDNVPSVSSI 534
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPR 195
NRI+R ++ G V GH + P SYSINGILG+
Sbjct: 535 NRIVRNRINSSESKIAPGKADEVINDGH----DGNLKVEPSSIHMPRSSYSINGILGMAA 702
Query: 196 S-----NGEKRKRDEDVSEGSVPNGDSQ--------SSVDSLRKH----LRGDTFTQQQL 238
KRK + +E + + + + S LR H + TF+ +Q+
Sbjct: 703 QPVISVPPSKRKHSVESAESTGSHSEEEGHDGQVGAGSPTDLRGHKIVRRQRTTFSGEQI 882
Query: 239 EALDRVFERPSYPDVF 254
E L++ FE+ YPDVF
Sbjct: 883 EQLEKTFEKTHYPDVF 930
>dbj|AB006675.1|AB006675 Halocynthia roretzi HrPax-258 mRNA, complete cds
Length = 2036
Score = 242 bits (618), Expect = 4e-62
Identities = 124/186 (66%), Positives = 139/186 (74%), Gaps = 1/186 (0%)
Frame = +2
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P + GHGG+NQLGGV+VNGRPLPD VRQ IV+LAHQGVRPCDI+RQLRVSHGCVSKI
Sbjct: 233 PLTPSRSGHGGINQLGGVYVNGRPLPDPVRQTIVDLAHQGVRPCDIARQLRVSHGCVSKI 412
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
L RYYETGSIKPGVIGGSKPKVATP+VV+KI EYKRQNPTMFAWEIRDRLL E ICD +
Sbjct: 413 LARYYETGSIKPGVIGGSKPKVATPRVVEKICEYKRQNPTMFAWEIRDRLLVECICDTEN 592
Query: 129 VPSVSSINRIIRTK-VQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSI 187
VPSVSSINRI+R K ++ H + S G+ + + SYSI
Sbjct: 593 VPSVSSINRIVRDKAAEKSKHHAMEVSSVGIPSSACILDGGESQRGT---------SYSI 745
Query: 188 NGILGI 193
NGILGI
Sbjct: 746 NGILGI 763
>emb|AJ251932.1|PMA251932 Phallusia mammillata mRNA for transcription factor (pax258A gene)
Length = 2997
Score = 239 bits (609), Expect = 4e-61
Identities = 121/186 (65%), Positives = 138/186 (74%), Gaps = 4/186 (2%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGG+NQLGGV+VNGRPLPD +RQ+IV+ AH GVRPCDI+RQLRVSHGCVSKIL RYYET
Sbjct: 191 GHGGINQLGGVYVNGRPLPDQIRQQIVDQAHHGVRPCDIARQLRVSHGCVSKILARYYET 370
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSI+PGVIGGSKPKVATPKVV+KI EYKRQNPTMFAWEIRDRLL E ICD D VPSVSSI
Sbjct: 371 GSIRPGVIGGSKPKVATPKVVEKICEYKRQNPTMFAWEIRDRLLGEQICDQDNVPSVSSI 550
Query: 136 NRIIRTK----VQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 191
NRI+R K + H +G G + G +D SY+ING+L
Sbjct: 551 NRIVRNKAAENAKNHHHLAHVAAGMGQTSLG---MSSSCVPSSMMVEHDVRNSYTINGLL 721
Query: 192 GIPRSN 197
G+ +N
Sbjct: 722 GLQATN 739
>gb|AF016888.1|AF016888 Drosophila melanogaster paired box protein (dPax258) mRNA, partial
cds
Length = 2652
Score = 238 bits (606), Expect = 9e-61
Identities = 174/453 (38%), Positives = 206/453 (45%), Gaps = 92/453 (20%)
Frame = +3
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
HGGVNQLGGVFVNGRPLPDVVRQRIVELAH GVRPCDISRQLRVSHGCVSKIL RYYETG
Sbjct: 3 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETG 182
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
S K GVIGGSKPKVATP VVD IA YKR+NPTMFAWEIRDRLLAE IC D VPSVSSIN
Sbjct: 183 SFKAGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSIN 362
Query: 137 RIIRTK------------------------------------VQQPFHPTPDGSGTGV-- 158
RI+R K + +P PT + S V
Sbjct: 363 RIVRNKAAEKAKHVHHHQQHHVSQSLGGGHIATESVDSSTGTIGEPQPPTSNSSANSVNT 542
Query: 159 ---------------------AAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 197
+ GH YSINGILGI +
Sbjct: 543 NVSASASVHASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRTTGYSINGILGIQHGH 722
Query: 198 GE-------------------KRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQL 238
KRKR E E N S + K R T++ QL
Sbjct: 723 HSHNNNNNSSVNNNNNTESSCKRKRIEAHDENHDTNIHSDNDDG---KRQRMSTYSGDQL 893
Query: 239 EALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLD-------EVKSSLSTSANPD 291
Y +++ IK + L LT E + ST+
Sbjct: 894 -----------YTNIWSGKWCIKDDHKLLAELGNLTASTGNCPATYYEASNGFSTTPISG 1040
Query: 292 LGTNVSGPQT---YPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNP 348
G SG T Y +T +++ + P G P+ + +VPGS+++ N
Sbjct: 1041SGATASGNDTSMLYDSITTISQTQSSI-----YTPAIG----PSIGCSSVVPGSDYAYN- 1190
Query: 349 YSHPQYTTYNEAWRF----SNPALLSSPYYYSA 377
P YT Y A+ + L++S YYY +
Sbjct: 1191---PAYTQYGGAYGSYGYGTGSGLINSSYYYES 1280
>ref|NM_013001.1| Rattus norvegicus Paired box homeotic gene 6 (Pax6), mRNA
Length = 2550
Score = 236 bits (602), Expect = 3e-60
Identities = 125/250 (50%), Positives = 158/250 (63%), Gaps = 6/250 (2%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 375 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 554
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 555 RYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIP 734
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 735 SVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSV 884
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P +G +++ + + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 885 PGQPTQDGCQQQEGQGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1064
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1065FERTHYPDVF 1094
>gb|U69644.1|RNU69644 Rattus norvegicus Pax-6 mRNA, comlete cds
Length = 2550
Score = 236 bits (602), Expect = 3e-60
Identities = 125/250 (50%), Positives = 158/250 (63%), Gaps = 6/250 (2%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 375 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 554
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 555 RYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIP 734
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 735 SVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSV 884
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P +G +++ + + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 885 PGQPTQDGCQQQEGQGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1064
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1065FERTHYPDVF 1094
>gb|AF061252.1|AF061252 Danio rerio Pax-family transcription factor 6.2 (pax6.2) mRNA,
complete cds
Length = 1733
Score = 235 bits (600), Expect(2) = 3e-60
Identities = 129/261 (49%), Positives = 161/261 (61%), Gaps = 17/261 (6%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 312 SMMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 491
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 492 RYYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIP 671
Query: 131 SVSSINRIIRTKVQQPFHPTPDG-----------SGTGVAAPGHTIXXXXXXXXXXXXXN 179
SVSSINR++R + DG SGT PG
Sbjct: 672 SVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQSGTWGTRPGW---------------- 803
Query: 180 DPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTF 233
Y + G P +G +++ + + S+ + S +R L+ +F
Sbjct: 804 -----YPGTSVPGQPNQDGCQQQDNGGENTNSISSNGEDSDETQMRLQLKRKLQRNRTSF 968
Query: 234 TQQQLEALDRVFERPSYPDVF 254
TQ+Q+EAL++ FER YPDVF
Sbjct: 969 TQEQIEALEKEFERTHYPDVF 1031
Score = 22.3 bits (46), Expect(2) = 3e-60
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 293 GTNVSGPQTYPVVTGRDMASTTLPGYPPHVPP 324
GT P T PV AST P H PP
Sbjct: 1132 GTRDDKPATPPVTFPSAAASTPASIRPSHNPP 1227
>ref|NM_000280.1| Homo sapiens paired box gene 6 (aniridia, keratitis) (PAX6), mRNA
Length = 1698
Score = 233 bits (595), Expect = 2e-59
Identities = 124/250 (49%), Positives = 157/250 (62%), Gaps = 6/250 (2%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
++M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 412 ASMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 591
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 592 RYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIP 771
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 772 SVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSV 921
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P +G +++ + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 922 PGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1101
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1102FERTHYPDVF 1131
>gb|M93650.1|HUMPAX6AN Human paired box gene (PAX6) homologue, complete cds
Length = 1698
Score = 233 bits (595), Expect = 2e-59
Identities = 124/250 (49%), Positives = 157/250 (62%), Gaps = 6/250 (2%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
++M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 412 ASMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 591
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 592 RYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIP 771
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 772 SVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSV 921
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P +G +++ + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 922 PGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1101
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1102FERTHYPDVF 1131
>gb|BC011953.1|BC011953 Homo sapiens, Similar to paired box gene 6 (aniridia, keratitis),
clone MGC:17209 IMAGE:3880468, mRNA, complete cds
Length = 1631
Score = 233 bits (595), Expect = 2e-59
Identities = 124/250 (49%), Positives = 157/250 (62%), Gaps = 6/250 (2%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
++M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 336 ASMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 515
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 516 RYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIP 695
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 696 SVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSV 845
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P +G +++ + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 846 PGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1025
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1026FERTHYPDVF 1055
>gb|AY047583.1| Homo sapiens paired box protein PAX6 (PAX6) mRNA, complete cds
Length = 1399
Score = 233 bits (595), Expect = 2e-59
Identities = 124/250 (49%), Positives = 157/250 (62%), Gaps = 6/250 (2%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
++M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 125 ASMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 304
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 305 RYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIP 484
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 485 SVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSV 634
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P +G +++ + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 635 PGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 814
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 815 FERTHYPDVF 844
>gb|M77844.1|HUMOCLHMB H.sapiens oculorhombin (aniridia) mRNA, complete cds
Length = 1643
Score = 233 bits (595), Expect = 2e-59
Identities = 124/250 (49%), Positives = 157/250 (62%), Gaps = 6/250 (2%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
++M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 357 ASMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 536
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 537 RYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIP 716
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 717 SVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSV 866
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P +G +++ + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 867 PGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1046
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1047FERTHYPDVF 1076
>emb|X61389.1|BRPAXZFA B.rerio mRNA for Pax[zf-a]
Length = 2738
Score = 233 bits (595), Expect = 2e-59
Identities = 127/250 (50%), Positives = 157/250 (62%), Gaps = 6/250 (2%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 517 SMMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 696
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 697 RYYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIP 876
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 877 SVSSINRVLRNLASEKQQMGADG----------MYEKLRMLNGQTGTWGTRPGWYPGTSV 1026
Query: 191 LGIPRSNGEKR-----KRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQQQLEALDRV 244
G P +G ++ + +S + ++Q + RK R T FTQ+Q+EAL++
Sbjct: 1027PGQPNQDGCQQSDGGGENTNSISSNGEDSDETQMRLQLKRKLQRNRTSFTQEQIEALEKE 1206
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1207FERTHYPDVF 1236
>ref|NM_079894.1| Drosophila melanogaster shaven (sv), mRNA
Length = 4673
Score = 233 bits (594), Expect = 2e-59
Identities = 113/130 (86%), Positives = 116/130 (88%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAH GVRPCDISRQLRVSHGCVSKIL RYYET
Sbjct: 795 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYET 974
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GS K GVIGGSKPKVATP VVD IA YKR+NPTMFAWEIRDRLLAE IC D VPSVSSI
Sbjct: 975 GSFKAGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSI 1154
Query: 136 NRIIRTKVQQ 145
NRI+R K +
Sbjct: 1155NRIVRNKAAE 1184
>gb|AF010256.1|AF010256 Drosophila melanogaster sparkling protein (spa) mRNA, complete cds
Length = 4672
Score = 233 bits (594), Expect = 2e-59
Identities = 113/130 (86%), Positives = 116/130 (88%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAH GVRPCDISRQLRVSHGCVSKIL RYYET
Sbjct: 795 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYET 974
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GS K GVIGGSKPKVATP VVD IA YKR+NPTMFAWEIRDRLLAE IC D VPSVSSI
Sbjct: 975 GSFKAGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSI 1154
Query: 136 NRIIRTKVQQ 145
NRI+R K +
Sbjct: 1155NRIVRNKAAE 1184
>emb|X70475.1|CCPAX C. coturnix mRNA for paired box and homeobox gene
Length = 2509
Score = 233 bits (594), Expect = 2e-59
Identities = 125/252 (49%), Positives = 155/252 (60%), Gaps = 6/252 (2%)
Frame = +2
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKI
Sbjct: 365 PRPTMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKI 544
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
LGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND
Sbjct: 545 LGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDN 724
Query: 129 VPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSIN 188
+PSVSSINR++R + DG G Y
Sbjct: 725 IPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGTWGTRPGWYPGT 874
Query: 189 GILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALD 242
+ G P +G ++ + S+ + S +R L+ +FTQ+Q+EAL+
Sbjct: 875 SVPGQPAQDGCPQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE 1054
Query: 243 RVFERPSYPDVF 254
+ FER YPDVF
Sbjct: 1055KEFERTHYPDVF 1090
>emb|Y07548.1|AFPAX6E24 Astyanax fasciatus mRNA for PAX-6 protein, clone epigean 2-4
Length = 2053
Score = 232 bits (591), Expect = 5e-59
Identities = 127/250 (50%), Positives = 157/250 (62%), Gaps = 6/250 (2%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 545 SMMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 724
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIRDRLL+EGIC ND +P
Sbjct: 725 RYYETGSIRPRAIGGSKPRVATPEVVGKIAQFKRECPSIFAWEIRDRLLSEGICTNDNIP 904
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 905 SVSSINRVLRNLASEKQQMGADG----------MYEKLRMLNGQTGTWGTRPGWYPGTSV 1054
Query: 191 LGIPRSNGEKR-----KRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQQQLEALDRV 244
G P +G ++ + +S + ++Q + RK R T FTQ+Q+EAL++
Sbjct: 1055PGQPNQDGCQQSDGGAENTNSISSNGEDSEEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1234
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1235FERTHYPDVF 1264
>gb|AF154557.1|AF154557 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-2 allele, complete cds
Length = 2028
Score = 232 bits (591), Expect = 5e-59
Identities = 129/259 (49%), Positives = 160/259 (60%), Gaps = 17/259 (6%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 388 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 567
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIRDRLL++G+C ND +PSV
Sbjct: 568 YETGSIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRLLSDGVCTNDNIPSV 747
Query: 133 SSINRIIRTKVQQPFHPTPDG-----------SGTGVAAPGHTIXXXXXXXXXXXXXNDP 181
SSINR++R + DG +GT A PG
Sbjct: 748 SSINRVLRNLASEKQQMGSDGMYDKLRMLNGQTGTWGARPGW------------------ 873
Query: 182 VGSYSINGILGIPRSNGEK-----RKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQ 235
Y + G P G + + +S + ++Q + RK R T FTQ
Sbjct: 874 ---YPGTSVPGQPAQEGCQPQEGGAENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQ 1044
Query: 236 QQLEALDRVFERPSYPDVF 254
+Q+EAL++ FER YPDVF
Sbjct: 1045EQIEALEKEFERTHYPDVF 1101
>gb|AF154555.1|AF154555 Xenopus laevis paired domain transcription factor variant A (Pax-6)
mRNA, Pax-6-2 allele, complete cds
Length = 2211
Score = 232 bits (591), Expect = 5e-59
Identities = 129/259 (49%), Positives = 160/259 (60%), Gaps = 17/259 (6%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 430 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 609
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIRDRLL++G+C ND +PSV
Sbjct: 610 YETGSIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRLLSDGVCTNDNIPSV 789
Query: 133 SSINRIIRTKVQQPFHPTPDG-----------SGTGVAAPGHTIXXXXXXXXXXXXXNDP 181
SSINR++R + DG +GT A PG
Sbjct: 790 SSINRVLRNLASEKQQMGSDGMYDKLRMLNGQTGTWGARPGW------------------ 915
Query: 182 VGSYSINGILGIPRSNGEK-----RKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQ 235
Y + G P G + + +S + ++Q + RK R T FTQ
Sbjct: 916 ---YPGTSVPGQPAQEGCQPQEGGAENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQ 1086
Query: 236 QQLEALDRVFERPSYPDVF 254
+Q+EAL++ FER YPDVF
Sbjct: 1087EQIEALEKEFERTHYPDVF 1143
>gb|AF154556.1|AF154556 Xenopus laevis paired domain transcription factor variant A (Pax-6)
mRNA, Pax-6-1 allele, complete cds
Length = 2213
Score = 232 bits (591), Expect = 5e-59
Identities = 129/259 (49%), Positives = 160/259 (60%), Gaps = 17/259 (6%)
Frame = +3
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 432 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 611
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIRDRLL++G+C ND +PSV
Sbjct: 612 YETGSIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRLLSDGVCTNDNIPSV 791
Query: 133 SSINRIIRTKVQQPFHPTPDG-----------SGTGVAAPGHTIXXXXXXXXXXXXXNDP 181
SSINR++R + DG +GT A PG
Sbjct: 792 SSINRVLRNLASEKQQMGSDGMYDKLRMLNGQTGTWGARPGW------------------ 917
Query: 182 VGSYSINGILGIPRSNGEK-----RKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQ 235
Y + G P G + + +S + ++Q + RK R T FTQ
Sbjct: 918 ---YPGTSVPGQPAQEGCQPQEGGAENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQ 1088
Query: 236 QQLEALDRVFERPSYPDVF 254
+Q+EAL++ FER YPDVF
Sbjct: 1089EQIEALEKEFERTHYPDVF 1145
>emb|Y07546.1|AFPAX6C23 Astyanax fasciatus mRNA for PAX-6 protein, clone cave 2-3
Length = 2065
Score = 232 bits (591), Expect = 5e-59
Identities = 127/250 (50%), Positives = 157/250 (62%), Gaps = 6/250 (2%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 557 SMMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 736
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIRDRLL+EGIC ND +P
Sbjct: 737 RYYETGSIRPRAIGGSKPRVATPEVVGKIAQFKRECPSIFAWEIRDRLLSEGICTNDNIP 916
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R + DG G Y +
Sbjct: 917 SVSSINRVLRNLASEKQQMGADG----------MYEKLRMLNGQTGTWGTRPGWYPGTSV 1066
Query: 191 LGIPRSNGEKR-----KRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQQQLEALDRV 244
G P +G ++ + +S + ++Q + RK R T FTQ+Q+EAL++
Sbjct: 1067PGQPNQDGCQQSDGGAENTNSISSNGEDSEEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1246
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1247FERTHYPDVF 1276
>gb|AF154552.1|AF154552 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-3 allele, complete cds
Length = 1882
Score = 231 bits (589), Expect = 9e-59
Identities = 129/259 (49%), Positives = 160/259 (60%), Gaps = 17/259 (6%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 250 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 429
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIRDRLL++G+C ND +PSV
Sbjct: 430 YETGSIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRLLSDGVCTNDNIPSV 609
Query: 133 SSINRIIRTKVQQPFHPTPDG-----------SGTGVAAPGHTIXXXXXXXXXXXXXNDP 181
SSINR++R + DG +GT A PG
Sbjct: 610 SSINRVLRNLASEKQQMGSDGMYDKLRMLNGQTGTWGARPGW------------------ 735
Query: 182 VGSYSINGILGIPRSNGEK-----RKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQ 235
Y + G P G + + +S + ++Q + RK R T FTQ
Sbjct: 736 ---YPGTTVPGQPAQEGCQPQEGGAENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQ 906
Query: 236 QQLEALDRVFERPSYPDVF 254
+Q+EAL++ FER YPDVF
Sbjct: 907 EQIEALEKEFERTHYPDVF 963
>gb|AF169415.1|AF169415 Ambystoma mexicanum paired-box transcription factor -- isoform
(Pax6) mRNA, partial cds
Length = 1812
Score = 231 bits (589), Expect = 9e-59
Identities = 123/244 (50%), Positives = 154/244 (62%), Gaps = 6/244 (2%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 7 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 186
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSVSSIN
Sbjct: 187 SIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 366
Query: 137 RIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 196
R++R + DG G Y + G P
Sbjct: 367 RVLRNLASEKQQMGADG----------MYDKLRMLNGQTGTWGTRPGWYPGTSVPGQPTP 516
Query: 197 NGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRVFERPSY 250
+G +++ + S+ + S +R L+ +FTQ+Q+EAL++ FER Y
Sbjct: 517 DGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHY 696
Query: 251 PDVF 254
PDVF
Sbjct: 697 PDVF 708
>gb|AF169414.1|AF169414 Ambystoma mexicanum paired-box transcription factor -+ isoform
(Pax6) mRNA, partial cds
Length = 1963
Score = 231 bits (589), Expect = 9e-59
Identities = 123/244 (50%), Positives = 154/244 (62%), Gaps = 6/244 (2%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 7 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 186
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSVSSIN
Sbjct: 187 SIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 366
Query: 137 RIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 196
R++R + DG G Y + G P
Sbjct: 367 RVLRNLASEKQQMGADG----------MYDKLRMLNGQTGTWGTRPGWYPGTSVPGQPTP 516
Query: 197 NGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRVFERPSY 250
+G +++ + S+ + S +R L+ +FTQ+Q+EAL++ FER Y
Sbjct: 517 DGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHY 696
Query: 251 PDVF 254
PDVF
Sbjct: 697 PDVF 708
>emb|AJ249563.1|PCA249563 Podocoryne carnea mRNA for paired box protein, transcription factor
(pax-B gene)
Length = 2725
Score = 231 bits (589), Expect = 9e-59
Identities = 125/202 (61%), Positives = 144/202 (70%), Gaps = 18/202 (8%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLP+ VR++IVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 406 GHGGVNQLGGVFVNGRPLPEPVRRKIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 585
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSI+PGVIGGSKPKVATP VV KIAEYK NPTMFAWEIR+RLL + ICD ++VPSVSSI
Sbjct: 586 GSIRPGVIGGSKPKVATPSVVTKIAEYKIHNPTMFAWEIRERLLNDQICDVESVPSVSSI 765
Query: 136 NRIIRTK------VQQPFHP-TPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDP------- 181
NRI+R + +++P P +P S PG P
Sbjct: 766 NRIVRNRLGSGSTLKEPSSPGSPGESNMIKIEPGQHAGLFGYHGMPIQLGPSPGTFAHLP 945
Query: 182 --VGSYSINGILGI--PRSNGE 199
+ YS+NGILGI P+ +G+
Sbjct: 946 RSMAGYSVNGILGIAVPQGHGQ 1011
>gb|U77532.1|XLU77532 Xenopus laevis Pax6 mRNA, complete cds
Length = 2487
Score = 230 bits (586), Expect = 2e-58
Identities = 124/250 (49%), Positives = 153/250 (60%), Gaps = 6/250 (2%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 567 SDMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 746
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 747 RYYETGSIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIP 926
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R +G G Y +
Sbjct: 927 SVSSINRVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSV 1076
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P G + + + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 1077PGQPAQEGCQPQEGVGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1256
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1257FERTHYPDVF 1286
>gb|AF154553.1|AF154553 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-1 allele, complete cds
Length = 1980
Score = 230 bits (586), Expect = 2e-58
Identities = 124/250 (49%), Positives = 153/250 (60%), Gaps = 6/250 (2%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 361 SDMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 540
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 541 RYYETGSIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIP 720
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R +G G Y +
Sbjct: 721 SVSSINRVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSV 870
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P G + + + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 871 PGQPAQEGCQPQEGVGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1050
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1051FERTHYPDVF 1080
>gb|U76386.1|XLU76386 Xenopus laevis paired-type homeodomain (Pax-6) mRNA, complete cds
Length = 2009
Score = 230 bits (586), Expect = 2e-58
Identities = 124/250 (49%), Positives = 153/250 (60%), Gaps = 6/250 (2%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILG
Sbjct: 538 SDMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG 717
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYYETGSI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIRDRLL+EG+C ND +P
Sbjct: 718 RYYETGSIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIP 897
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSINR++R +G G Y +
Sbjct: 898 SVSSINRVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSV 1047
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRV 244
G P G + + + S+ + S +R L+ +FTQ+Q+EAL++
Sbjct: 1048PGQPAQEGCQPQEGVGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKE 1227
Query: 245 FERPSYPDVF 254
FER YPDVF
Sbjct: 1228FERTHYPDVF 1257
>gb|U64513.1|XLU64513 Xenopus laevis Xpax6 mRNA, complete cds
Length = 1270
Score = 229 bits (584), Expect = 3e-58
Identities = 123/248 (49%), Positives = 152/248 (60%), Gaps = 6/248 (2%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 180
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 181 YETGSIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 360
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
SSINR++R +G G Y + G
Sbjct: 361 SSINRVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSVPG 510
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRVFE 246
P G + + + S+ + S +R L+ +FTQ+Q+EAL++ FE
Sbjct: 511 QPAQEGCQPQEGVGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFE 690
Query: 247 RPSYPDVF 254
R YPDVF
Sbjct: 691 RTHYPDVF 714
>dbj|D88737.1|D88737 African clawed frog mRNA for Xenopus Pax-6 long, partial cds
Length = 1263
Score = 229 bits (584), Expect = 3e-58
Identities = 123/248 (49%), Positives = 152/248 (60%), Gaps = 6/248 (2%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 180
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 181 YETGSIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 360
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
SSINR++R +G G Y + G
Sbjct: 361 SSINRVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSVPG 510
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRVFE 246
P G + + + S+ + S +R L+ +FTQ+Q+EAL++ FE
Sbjct: 511 QPAQEGCQPQEGVGENTNSISSNGEDSDEAQMRLQLKRKLQKNRTSFTQEQIEALEKEFE 690
Query: 247 RPSYPDVF 254
R YPDVF
Sbjct: 691 RTHYPDVF 714
>dbj|D88738.1|D88738 African clawed frog mRNA for Xenopus Pax-6 short, partial cds
Length = 1112
Score = 229 bits (584), Expect = 3e-58
Identities = 123/248 (49%), Positives = 152/248 (60%), Gaps = 6/248 (2%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 180
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 181 YETGSIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 360
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
SSINR++R +G G Y + G
Sbjct: 361 SSINRVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSVPG 510
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRVFE 246
P G + + + S+ + S +R L+ +FTQ+Q+EAL++ FE
Sbjct: 511 QPAQEGCQPQEGVGENTNSISSNGEDSDEAQMRLQLKRKLQKNRTSFTQEQIEALEKEFE 690
Query: 247 RPSYPDVF 254
R YPDVF
Sbjct: 691 RTHYPDVF 714
>dbj|AB061220.1|AB061220 Lampetra japonica mRNA for paired box transcription factor Pax6,
complete cds
Length = 2742
Score = 229 bits (584), Expect = 3e-58
Identities = 137/263 (52%), Positives = 161/263 (61%), Gaps = 18/263 (6%)
Frame = +2
Query: 10 FSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69
F GH GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKIL
Sbjct: 455 FEEFRQGHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKIL 634
Query: 70 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTV 129
GRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG C +D +
Sbjct: 635 GRYYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGACTSDNI 814
Query: 130 PSVSSINRIIRTKV--QQPF---------------HPTPDGSGTGVAAPGHTIXXXXXXX 172
PSVSSINR++R +QP G+G G A PG
Sbjct: 815 PSVSSINRVLRNLASEKQPMGAEGVYDKLRMLNGQQQQQPGAGWG-ARPGW------YPG 973
Query: 173 XXXXXXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT 232
P G S +G L SN D SE D+Q + RK R T
Sbjct: 974 AALPGQQGPEGCASHDGSLDTSLSNSAS-----DDSE------DAQMRLQLKRKLQRNRT 1120
Query: 233 -FTQQQLEALDRVFERPSYPDVF 254
FTQ+Q+EAL++ FER YPDVF
Sbjct: 1121SFTQEQIEALEKEFERTHYPDVF 1189
>gb|AF165886.1|AF165886 Branchiostoma floridae paired-box transcription factor (Pax3/7)
mRNA, complete cds
Length = 1913
Score = 227 bits (579), Expect = 1e-57
Identities = 147/358 (41%), Positives = 186/358 (51%), Gaps = 15/358 (4%)
Frame = +1
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
PG G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY E
Sbjct: 160 PGQGRVNQLGGVFINGRPLPNHIRHKIVEMAAAGIRPCVISRQLRVSHGCVSKILCRYQE 339
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSIKPG IGGSKP+VATP+V KI +YKR NP MF+WEIRDRLL +G+CD TVPSVSS
Sbjct: 340 TGSIKPGAIGGSKPRVATPEVEKKIEDYKRDNPGMFSWEIRDRLLKDGMCDRSTVPSVSS 519
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+RI+R K GH I + +SI+GILG
Sbjct: 520 ISRILRGK-------------------GHKISDLEIEGEDDFSIDGDRKPHSIDGILG-- 636
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
E G + DS+ + RK R TFT +QLE L++ FER YPD+
Sbjct: 637 ----------EKNGPGDSSDCDSEPDLPLKRKQRRSRTTFTPEQLEELEKAFERTHYPDI 786
Query: 254 FQ----------TSEHIKSEQGNEYSLPALTPGLDEVKSSLSTS-ANPDLGTNVSGPQTY 302
+ T ++ N + G ++ S + P GT P
Sbjct: 787 YTREELAQRTKLTEARVQVWFSNRRARWRKQQGAQQIPSFMPLGYPAPAAGTPTYMPVPE 966
Query: 303 PVVTGRDMASTTLPGYPPHVPPTG---QGSYPTSTLAGMVPGSEFSGNPYSHPQYTTY 357
P S TL P +PPT G+ T+++ G + PY +P +Y
Sbjct: 967 PAYPANAQDSATL-HRPQPLPPTSIHQNGAADTASMYGT------ASKPYQYPFSDSY 1119
>emb|AJ223440.1|BFL223440 Branchiostoma floridae Pax6 gene (AmphiPax6) clone 12.1
Length = 4596
Score = 226 bits (577), Expect = 2e-57
Identities = 154/414 (37%), Positives = 211/414 (50%), Gaps = 27/414 (6%)
Frame = +2
Query: 2 DMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 61
D H + P A PGH GVNQLGGVFV GRPLPD R++IVELAHQG RPCDISR L+VS
Sbjct: 506 DEHAQYSPVQA-DPGHSGVNQLGGVFVGGRPLPDSTRRKIVELAHQGARPCDISRLLQVS 682
Query: 62 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAE 121
+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIRDRLL+E
Sbjct: 683 NGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSE 862
Query: 122 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDP 181
GIC N+ +PSVSSINR++R + +A + P
Sbjct: 863 GICTNENIPSVSSINRVLRNLASGEKNTLQSLQ----SADPQMLEKLRLLNGNAWPHPGP 1030
Query: 182 VGSYSINGILGIPRSNGE---KRKRD-------------EDVSEGSVPNGDSQSSVDSLR 225
P++NG K++ D +D +GS + D + L+
Sbjct: 1031WPYPPSTAGAPPPQTNGNVTTKKEGDGKLASQILTLHGYQDQGDGSNDDSDEAQARLRLK 1210
Query: 226 KHLRGD--TFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEV--K 281
+ L+ + +FTQ+Q+EAL++ FER YPDVF E + +
Sbjct: 1211RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 1390
Query: 282 SSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYP--TSTLAGMV 339
+ ++ S P P+ + A+ P PP P + S+ T + + +
Sbjct: 1391EEKLRNQRRSQDSDSSSPSRIPISSSFSTATMYQPIAPPSAPVMSRSSHAGLTDSYSSLP 1570
Query: 340 PGSEFS--GNPYSHPQYTTYNEAWRFS---NPALLSSPYYYSATSRGSAPPTAA 388
P FS GN P + +S + +P Y + + GS PT A
Sbjct: 1571PVPSFSVPGNMAPMPSMQQSRDQTSYSCMIPHSTAMTPRGYDSLALGSYNPTHA 1732
>emb|AJ223443.1|BFL223443 Branchiostoma floridae Pax6 gene (AmphiPax6), clone 4.2
Length = 3010
Score = 226 bits (575), Expect = 4e-57
Identities = 130/271 (47%), Positives = 167/271 (60%), Gaps = 18/271 (6%)
Frame = +2
Query: 2 DMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 61
D H + P A PGH GVNQLGGVFV GRPLPD RQ+IVELAHQG RPCDISR L+VS
Sbjct: 617 DEHAQYSPVQA-DPGHSGVNQLGGVFVGGRPLPDSTRQKIVELAHQGARPCDISRLLQVS 793
Query: 62 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAE 121
+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIRDRLL+E
Sbjct: 794 NGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSE 973
Query: 122 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDP 181
GIC N+ +PSVSSINR++R + +A + P
Sbjct: 974 GICTNENIPSVSSINRVLRNLASGEKNTLQSLQ----SADPQMLEKLRLLNGNAWPHPGP 1141
Query: 182 VGSYSINGILGIPRSNGE---KRKRD-------------EDVSEGSVPNGDSQSSVDSLR 225
P++NG K++ D +D +GS + D + L+
Sbjct: 1142WPYPPSTAGAPPPQTNGNVTTKKEGDGKLASQILTLHGYQDQGDGSNDDSDEAQARLRLK 1321
Query: 226 KHLRGD--TFTQQQLEALDRVFERPSYPDVF 254
+ L+ + +FTQ+Q+EAL++ FER YPDVF
Sbjct: 1322RKLQRNRSSFTQEQIEALEKEFERTHYPDVF 1414
>gb|U14621.1|PLU14621 Paracentrotus lividus Pax-6 (suPax-6) mRNA, complete cds
Length = 5015
Score = 226 bits (575), Expect = 4e-57
Identities = 153/395 (38%), Positives = 197/395 (49%), Gaps = 26/395 (6%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GH GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYET
Sbjct: 715 GHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYET 894
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSI+P IGGSKP+VATP VV +IA YKR+ P++FAWEIRDRLLAE IC+ + +PSVSSI
Sbjct: 895 GSIRPRAIGGSKPRVATPHVVTRIAHYKRECPSIFAWEIRDRLLAEKICNQENIPSVSSI 1074
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXX--XXXXXXXXXXNDPVGSYSINGILGI 193
NR++R + D G P+G +++
Sbjct: 1075 NRVLRNLASEKTMGHGDMFDKLRMLNGQWARSGPWYAPNVNAAMPGQPLGHHTMEPF--- 1245
Query: 194 PRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQQQLEALDRVFERPSYPD 252
+ GE + ED + D+Q+ + RK R T FT QQ+E L++ FER YPD
Sbjct: 1246 -KKEGEHESKAED-------DEDAQARLRLKRKLQRNRTSFTAQQIEELEKEFERTHYPD 1401
Query: 253 VF-----------------------QTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSAN 289
VF + + + N+ A G+ SS ++
Sbjct: 1402 VFARERLAQKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQQAEVGGVHTQSSSHLPLSS 1581
Query: 290 PDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPY 349
NVS Q P + M T P +PP S + GM P S
Sbjct: 1582 GYSSNNVSVYQPIPQPSAATMVPRTAPDSYSAIPPMPSFSMASGPNIGMQPRDTSSYTRM 1761
Query: 350 SHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAP 384
H Y+ +S P P +++ +S G AP
Sbjct: 1762 LHQPTHGYDSL--YSTP-----PNHHTMSSHGHAP 1845
>ref|NM_013627.1| Mus musculus paired box gene 6 (Pax6), mRNA
Length = 2481
Score = 225 bits (573), Expect = 6e-57
Identities = 125/264 (47%), Positives = 157/264 (59%), Gaps = 20/264 (7%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 157 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 336
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 337 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 516
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 517 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 666
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 667 SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 846
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 847 TSFTQEQIEALEKEFERTHYPDVF 918
>emb|X63963.1|MMPAX6PBP M.musculus pax-6 mRNA for paired box protein
Length = 2481
Score = 225 bits (573), Expect = 6e-57
Identities = 125/264 (47%), Positives = 157/264 (59%), Gaps = 20/264 (7%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 157 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 336
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 337 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 516
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 517 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 666
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 667 SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 846
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 847 TSFTQEQIEALEKEFERTHYPDVF 918
>emb|Y19193.1|MMUY19193 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-2-NEU
Length = 1556
Score = 225 bits (573), Expect = 6e-57
Identities = 125/264 (47%), Positives = 157/264 (59%), Gaps = 20/264 (7%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 104 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 283
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 284 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 463
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 464 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 613
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 614 SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 793
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 794 TSFTQEQIEALEKEFERTHYPDVF 865
>gb|U59830.1|LOU59830 Loligo opalescens Pax-6 mRNA, complete cds
Length = 1980
Score = 225 bits (573), Expect = 6e-57
Identities = 133/273 (48%), Positives = 161/273 (58%), Gaps = 29/273 (10%)
Frame = +3
Query: 11 SAMHP-GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69
S HP GH GVNQLGGVFVNGRPLPD RQRIVELAH G RPCDISR L+VS+GCVSKIL
Sbjct: 51 SDQHPNGHSGVNQLGGVFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKIL 230
Query: 70 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTV 129
GRYYETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIRDRLL+EG+C D +
Sbjct: 231 GRYYETGSIRPRAIGGSKPRVATPEVVQKIAQFKRECPSIFAWEIRDRLLSEGVCTQDNI 410
Query: 130 PSVSSINRIIRTKVQQ---------------------------PFHPTPDGSGTGVAAPG 162
PSVSSINR++R + P++ P+ S G++AP
Sbjct: 411 PSVSSINRVLRNLAGENQKVLGQGTTMYDKLGLLNGQAWPRPNPWY-APNASMAGLSAPS 587
Query: 163 HTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVD 222
+ + + S NG G NGE D Q +
Sbjct: 588 SYTQPNAPPTVAGKKEMENMSTNSDNG-QGDGSQNGET---------------DEQMRIR 719
Query: 223 SLRKHLRGDT-FTQQQLEALDRVFERPSYPDVF 254
RK R T FT Q+EAL++ FER YPDVF
Sbjct: 720 LKRKLQRNRTSFTAAQIEALEKEFERTHYPDVF 818
>gb|BC011272.1|BC011272 Mus musculus, clone MGC:18454 IMAGE:4008490, mRNA, complete cds
Length = 2580
Score = 225 bits (573), Expect = 6e-57
Identities = 125/264 (47%), Positives = 157/264 (59%), Gaps = 20/264 (7%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 524 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 703
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 704 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 883
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 884 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 1033
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 1034SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 1213
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 1214TSFTQEQIEALEKEFERTHYPDVF 1285
>emb|Y19198.1|MMUY19198 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-6NEU
Length = 1469
Score = 225 bits (573), Expect = 6e-57
Identities = 125/264 (47%), Positives = 157/264 (59%), Gaps = 20/264 (7%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 104 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 283
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 284 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 463
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 464 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 613
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 614 SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 793
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 794 TSFTQEQIEALEKEFERTHYPDVF 865
>emb|Y19196.1|MMUY19196 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-4NEU
Length = 1469
Score = 225 bits (573), Expect = 6e-57
Identities = 125/264 (47%), Positives = 157/264 (59%), Gaps = 20/264 (7%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 104 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 283
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 284 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 463
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 464 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 613
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 614 SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 793
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 794 TSFTQEQIEALEKEFERTHYPDVF 865
>gb|U96197.1|CQU96197 Chrysaora quinquecirrha Pax-B (Pax-B) gene, partial cds
Length = 381
Score = 224 bits (572), Expect = 8e-57
Identities = 107/127 (84%), Positives = 116/127 (91%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGG+FVNGRPLP+ VR+RIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 1 GHGGVNQLGGMFVNGRPLPEPVRRRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 180
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATP VV KIA+YK NPTMFAWEIRDRLL + +C + VPSVSSI
Sbjct: 181 GSIKPGVIGGSKPKVATPMVVGKIADYKIANPTMFAWEIRDRLLLDSVCTQENVPSVSSI 360
Query: 136 NRIIRTK 142
NRI+R +
Sbjct: 361 NRIVRNR 381
>emb|Y19199.1|MMUY19199 Mus musculus partial Pax-6 gene for paired box protein, PAX6-7NEU
Length = 1469
Score = 224 bits (572), Expect = 8e-57
Identities = 125/264 (47%), Positives = 156/264 (58%), Gaps = 20/264 (7%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 104 SCMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 283
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 284 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 463
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 464 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 613
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 614 SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 793
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 794 TSFTQEQIEALEKEFERTHYPDVF 865
>ref|NM_001604.2| Homo sapiens paired box gene 6 (aniridia, keratitis) (PAX6), mRNA
Length = 1740
Score = 224 bits (570), Expect = 1e-56
Identities = 124/264 (46%), Positives = 157/264 (58%), Gaps = 20/264 (7%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
++M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 412 ASMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 591
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 592 NQNVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 771
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 772 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 921
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 922 SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 1101
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 1102TSFTQEQIEALEKEFERTHYPDVF 1173
>emb|X63183.1|BRPAX6 B.rerio pax-6 mRNA
Length = 2809
Score = 224 bits (570), Expect = 1e-56
Identities = 127/264 (48%), Positives = 157/264 (59%), Gaps = 20/264 (7%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 540 SMMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 719
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 720 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRD 899
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 900 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYEKLRMLNGQTG 1049
Query: 177 XXNDPVGSYSINGILGIPRSNGEKR-----KRDEDVSEGSVPNGDSQSSVDSLRKHLRGD 231
G Y + G P +G ++ + +S + ++Q + RK R
Sbjct: 1050TWGTRPGWYPGTSVPGQPNQDGCQQSDGGGENTNSISSNGEDSDETQMRLQLKRKLQRNR 1229
Query: 232 T-FTQQQLEALDRVFERPSYPDVF 254
T FTQ+Q+EAL++ FER YPDVF
Sbjct: 1230TSFTQEQIEALEKEFERTHYPDVF 1301
>ref|NM_077357.1| 'Paired box' domain, homeobox protein (paired subfamily)
Length = 1368
Score = 223 bits (569), Expect = 2e-56
Identities = 154/404 (38%), Positives = 209/404 (51%), Gaps = 46/404 (11%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GH GVNQLGGVFVNGRPLPD RQRIV+LAH+G RPCDISR L+VS+GCVSKIL RYYE+
Sbjct: 13 GHTGVNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYES 192
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
G+I+P IGGSKP+VAT VV+KI +YKR P++FAWEIRD+LLA+ IC+N+T+PSVSSI
Sbjct: 193 GTIRPRAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPSVSSI 372
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSI--NGILGI 193
NR++R + T + + G + I NG +G+
Sbjct: 373 NRVLRNLAAKKEQVTMQTE----------LYDRIRIVDNFPYNSSWYGQWPIPMNGAVGL 522
Query: 194 ----------PRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQQQLEALD 242
P++ GE K DED + P D+ + + RK R T FTQ Q+E+L+
Sbjct: 523 NPFVPAPLIEPKTEGEFEK-DEDQKPPTEPEDDAAARMRLKRKLQRNRTSFTQVQIESLE 699
Query: 243 RVFERPSYPDVF---------------------------QTSEHIKSEQGN---EYSLPA 272
+ FER YPDVF + E +++++ + + SL
Sbjct: 700 KEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSGTMDSSLSN 879
Query: 273 LTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPT 332
TP + S NP +G+ S P +P ++ +T VP T Q Y
Sbjct: 880 GTPTPTPGSVTGSNMTNP-IGSPASTPNRFPSNNSANLPTTNF------VPQTSQ-MYAG 1035
Query: 333 STLAGMVPGSEFSGNPYS---HPQYTTYNEAWRFSNPALLSSPY 373
+ M P S N +S +PQ T + F + PY
Sbjct: 1036LSQPAMDPYSFGIANGFSMAPYPQVTDFQPHHMFQGRSPYDFPY 1167
>gb|U31537.1|CEU31537 Caenorhabditis elegans variable abnormal-3 (vab-3) mRNA, complete
cds (and male abnormal-18 (mab-18), 3' exons, partial
cds)
Length = 2549
Score = 223 bits (569), Expect = 2e-56
Identities = 154/404 (38%), Positives = 209/404 (51%), Gaps = 46/404 (11%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GH GVNQLGGVFVNGRPLPD RQRIV+LAH+G RPCDISR L+VS+GCVSKIL RYYE+
Sbjct: 269 GHTGVNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYES 448
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
G+I+P IGGSKP+VAT VV+KI +YKR P++FAWEIRD+LLA+ IC+N+T+PSVSSI
Sbjct: 449 GTIRPRAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPSVSSI 628
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSI--NGILGI 193
NR++R + T + + G + I NG +G+
Sbjct: 629 NRVLRNLAAKKEQVTMQTE----------LYDRIRIVDNFPYNSSWYGQWPIPMNGAVGL 778
Query: 194 ----------PRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQQQLEALD 242
P++ GE K DED + P D+ + + RK R T FTQ Q+E+L+
Sbjct: 779 NPFVPAPLIEPKTEGEFEK-DEDQKPPTEPEDDAAARMRLKRKLQRNRTSFTQVQIESLE 955
Query: 243 RVFERPSYPDVF---------------------------QTSEHIKSEQGN---EYSLPA 272
+ FER YPDVF + E +++++ + + SL
Sbjct: 956 KEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSGTMDSSLSN 1135
Query: 273 LTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPT 332
TP + S NP +G+ S P +P ++ +T VP T Q Y
Sbjct: 1136GTPTPTPGSVTGSNMTNP-IGSPASTPNRFPSNNSANLPTTNF------VPQTSQ-MYAG 1291
Query: 333 STLAGMVPGSEFSGNPYS---HPQYTTYNEAWRFSNPALLSSPY 373
+ M P S N +S +PQ T + F + PY
Sbjct: 1292LSQPAMDPYSFGIANGFSMAPYPQVTDFQPHHMFQGRSPYDFPY 1423
>dbj|D87837.1|D87837 Gallus gallus mRNA for PAX6 protein, complete cds
Length = 1964
Score = 223 bits (569), Expect = 2e-56
Identities = 125/266 (46%), Positives = 155/266 (57%), Gaps = 20/266 (7%)
Frame = +3
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------- 59
P M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 318 PRPTMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQV 497
Query: 60 -----VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEI 114
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEI
Sbjct: 498 LDNQNVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEI 677
Query: 115 RDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXX 174
RDRLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 678 RDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQ 827
Query: 175 XXXXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR----- 229
G Y + G P +G ++ + S+ + S +R L+
Sbjct: 828 TGTWGTRPGWYPGTSVPGQPAQDGCPQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQR 1007
Query: 230 -GDTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 1008NRTSFTQEQIEALEKEFERTHYPDVF 1085
>gb|U96194.1|HLU96194 Hydra littoralis Pax-B mRNA, complete cds
Length = 1904
Score = 223 bits (569), Expect = 2e-56
Identities = 137/297 (46%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Frame = +3
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
HGG+NQLGG FVNGRPL + VR++IVELAHQGVRPCDISRQLRVSHGCVSKIL R+YETG
Sbjct: 300 HGGINQLGGTFVNGRPLIEPVRRKIVELAHQGVRPCDISRQLRVSHGCVSKILSRFYETG 479
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
S++PGVIGGSKPKVATP VV KI EYK+ NPTMFAWEIRD+LL+E ICD+D+VPSVSSIN
Sbjct: 480 SVRPGVIGGSKPKVATPSVVAKIQEYKQHNPTMFAWEIRDKLLSEQICDSDSVPSVSSIN 659
Query: 137 RIIRTKVQQPFHPT------------PDGS----GTGVAAPGHTIXXXXXXXXXXXXXND 180
RI+R ++ H + PD + G+ I
Sbjct: 660 RIVRNRLGSSSHASMADLNSPLLKIDPDMTHYFVHPGLPIQIGAISTNFPGSIHAHLPRT 839
Query: 181 PVGSYSINGILG--IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHL----RGDTFT 234
GSYSI+GILG +P S G S+ S+PN V + H+ +G+
Sbjct: 840 TSGSYSISGILGMAVPSSQGNLGTLIM-CSDYSIPN------VQQMHSHVLNDEKGNVHI 998
Query: 235 QQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPD 291
Q+ E + + +H NEY L + D +S S+ +N +
Sbjct: 999 MQEGE-------------IAPSIDHPTQVNANEYVLESSDSFHDSSAASSSSLSNEE 1130
>emb|Y07547.1|AFPAX6C72 Astyanax fasciatus mRNA for PAX-6 protein, clone cave 7-2
Length = 2211
Score = 223 bits (567), Expect = 3e-56
Identities = 126/265 (47%), Positives = 158/265 (59%), Gaps = 20/265 (7%)
Frame = +1
Query: 10 FSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR---------- 59
+ + GH GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 658 YDICNEGHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTQADAKVQVL 837
Query: 60 ----VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR 115
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR
Sbjct: 838 DNENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVGKIAQFKRECPSIFAWEIR 1017
Query: 116 DRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXX 175
DRLL+EGIC ND +PSVSSINR++R + DG
Sbjct: 1018DRLLSEGICTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYEKLRMLNGQT 1167
Query: 176 XXXNDPVGSYSINGILGIPRSNGEKR-----KRDEDVSEGSVPNGDSQSSVDSLRKHLRG 230
G Y + G P +G ++ + +S + ++Q + RK R
Sbjct: 1168GTWGTRPGWYPGTSVPGQPNQDGCQQSDGGAENTNSISSNGEDSEEAQMRLQLKRKLQRN 1347
Query: 231 DT-FTQQQLEALDRVFERPSYPDVF 254
T FTQ+Q+EAL++ FER YPDVF
Sbjct: 1348RTSFTQEQIEALEKEFERTHYPDVF 1422
>emb|AJ307468.1|MMU307468 Mus musculus mRNA for paired box protein (Pax-6 gene)
Length = 1469
Score = 223 bits (567), Expect = 3e-56
Identities = 125/264 (47%), Positives = 156/264 (58%), Gaps = 20/264 (7%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 104 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 283
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA YKR+ P++FAWEIRD
Sbjct: 284 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIA*YKRECPSIFAWEIRD 463
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 464 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 613
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 614 SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 793
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 794 TSFTQEQIEALEKEFERTHYPDVF 865
>dbj|D88741.1|D88741 Cynops pyrrhogaster mRNA for PAX6 LL, PAX6 SL, PAX6 LS, PAX6 SS
Length = 2417
Score = 223 bits (567), Expect = 3e-56
Identities = 124/262 (47%), Positives = 155/262 (58%), Gaps = 20/262 (7%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------- 59
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 181 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDSQ 360
Query: 60 -VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRL
Sbjct: 361 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 540
Query: 119 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXX 178
L+EG+C ND +PSVSSINR++R + DG
Sbjct: 541 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGTW 690
Query: 179 NDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDT 232
G Y + G P +G +++ + S+ + S +R L+ +
Sbjct: 691 GTRPGWYPGTSVPGQPTPDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTS 870
Query: 233 FTQQQLEALDRVFERPSYPDVF 254
FTQ+Q+EAL++ FER YPDVF
Sbjct: 871 FTQEQIEALEKEFERTHYPDVF 936
>gb|U67887.1|XLU67887 Xenopus laevis XLPAX6 (Pax6) mRNA, complete cds
Length = 1643
Score = 222 bits (566), Expect = 4e-56
Identities = 129/273 (47%), Positives = 160/273 (58%), Gaps = 31/273 (11%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------- 59
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 196 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQSHADAKVPVLDSQ 375
Query: 60 -VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIRDRL
Sbjct: 376 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRL 555
Query: 119 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------SGTGVAAPGHTIXX 167
L++G+C ND +PSVSSINR++R + DG +GT A PG
Sbjct: 556 LSDGVCTNDNIPSVSSINRVLRNLASEKQQMGSDGMYDKLRMLNGQTGTWGARPGW---- 723
Query: 168 XXXXXXXXXXXNDPVGSYSINGILGIPRSNGEK-----RKRDEDVSEGSVPNGDSQSSVD 222
Y + G P G + + +S + ++Q +
Sbjct: 724 -----------------YPGTSVPGQPAQEGCQPQEGGAENTNSISSNGEDSDEAQMRLQ 852
Query: 223 SLRKHLRGDT-FTQQQLEALDRVFERPSYPDVF 254
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 853 LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 951
>gb|AF169412.1|AF169412 Ambystoma mexicanum paired-box transcription factor ++ isoform
(Pax6) mRNA, partial cds
Length = 2005
Score = 221 bits (564), Expect = 7e-56
Identities = 123/258 (47%), Positives = 154/258 (59%), Gaps = 20/258 (7%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 62
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 7 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTQADAKVQVLDNQNVSN 186
Query: 63 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEG 122
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG
Sbjct: 187 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEG 366
Query: 123 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPV 182
+C ND +PSVSSINR++R + DG
Sbjct: 367 VCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGTWGTRP 516
Query: 183 GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQ 236
G Y + G P +G +++ + S+ + S +R L+ +FTQ+
Sbjct: 517 GWYPGTSVPGQPTPDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQE 696
Query: 237 QLEALDRVFERPSYPDVF 254
Q+EAL++ FER YPDVF
Sbjct: 697 QIEALEKEFERTHYPDVF 750
>gb|AF169413.1|AF169413 Ambystoma mexicanum paired-box transcription factor +- isoform
(Pax6) mRNA, partial cds
Length = 1854
Score = 221 bits (564), Expect = 7e-56
Identities = 123/258 (47%), Positives = 154/258 (59%), Gaps = 20/258 (7%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 62
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 7 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTQADAKVQVLDNQNVSN 186
Query: 63 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEG 122
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG
Sbjct: 187 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEG 366
Query: 123 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPV 182
+C ND +PSVSSINR++R + DG
Sbjct: 367 VCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGTWGTRP 516
Query: 183 GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------GDTFTQQ 236
G Y + G P +G +++ + S+ + S +R L+ +FTQ+
Sbjct: 517 GWYPGTSVPGQPTPDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQE 696
Query: 237 QLEALDRVFERPSYPDVF 254
Q+EAL++ FER YPDVF
Sbjct: 697 QIEALEKEFERTHYPDVF 750
>emb|Y19197.1|MMUY19197 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-5NEU
Length = 1469
Score = 221 bits (564), Expect = 7e-56
Identities = 124/264 (46%), Positives = 156/264 (58%), Gaps = 20/264 (7%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 104 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 283
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 284 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 463
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
LL+EG+C ND +PSVSSINR++R + DG
Sbjct: 464 *LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTG 613
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P +G +++ + S+ + S +R L+
Sbjct: 614 SWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 793
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 794 TSFTQEQIEALEKEFERTHYPDVF 865
>gb|AF260127.1|AF260127 Cladonema californicum transcription factor Pax-B1 (Pax-B1) mRNA,
partial cds
Length = 2248
Score = 221 bits (563), Expect = 9e-56
Identities = 118/213 (55%), Positives = 142/213 (66%), Gaps = 25/213 (11%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S HGGVNQLGG+FVNGRPLP+ +R++IV+L+ QGVRPCDISR+LRVSHGCVSKILG
Sbjct: 183 SVFKENHGGVNQLGGIFVNGRPLPEHIRRKIVDLSSQGVRPCDISRELRVSHGCVSKILG 362
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
R+YETGSI+PGVIGGSKPKVATP V+ KIAEYK QNPTMFAWEIR+ LL + ICD ++VP
Sbjct: 363 RFYETGSIRPGVIGGSKPKVATPSVIQKIAEYKTQNPTMFAWEIRECLLNDNICDAESVP 542
Query: 131 SVSSINRIIRTKVQQPFH-----PTPD-------------------GSGTGVAAPGHTIX 166
SVSSINRI+R ++ + P P G+ G+ +
Sbjct: 543 SVSSINRIVRNRIGSKGNGGKNVPQPSMVENASVMKLESNEQTNIFGTAGGIPIQLSQLP 722
Query: 167 XXXXXXXXXXXXNDPVGSYSINGILG-IPRSNG 198
GSYSI+GILG IP+SNG
Sbjct: 723 GGFQTALQTQIPRSGNGSYSISGILGIIPQSNG 821
>gb|BC008826.1|BC008826 Homo sapiens, paired box gene 3 (Waardenburg syndrome 1), clone
MGC:12856 IMAGE:4099446, mRNA, complete cds
Length = 2827
Score = 221 bits (563), Expect = 9e-56
Identities = 123/244 (50%), Positives = 153/244 (62%), Gaps = 1/244 (0%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 287 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 466
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSI+PG IGGSKPKV TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSSI
Sbjct: 467 GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 646
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPR 195
+RI+R+K G G A ++ +SI+GIL R
Sbjct: 647 SRILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS-ER 769
Query: 196 SNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDVF 254
++ + D+ DS+ + RK R TFT +QLE L+R FER YPD++
Sbjct: 770 ASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIY 925
Query: 255 QTSE 258
E
Sbjct: 926 TREE 937
>gb|AF260128.1|AF260128 Cladonema californicum transcription factor Pax-B mRNA, partial cds
Length = 2235
Score = 221 bits (563), Expect = 9e-56
Identities = 118/213 (55%), Positives = 142/213 (66%), Gaps = 25/213 (11%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S HGGVNQLGG+FVNGRPLP+ +R++IV+L+ QGVRPCDISR+LRVSHGCVSKILG
Sbjct: 183 SVFKENHGGVNQLGGIFVNGRPLPEHIRRKIVDLSSQGVRPCDISRELRVSHGCVSKILG 362
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
R+YETGSI+PGVIGGSKPKVATP V+ KIAEYK QNPTMFAWEIR+ LL + ICD ++VP
Sbjct: 363 RFYETGSIRPGVIGGSKPKVATPSVIQKIAEYKTQNPTMFAWEIRECLLNDNICDAESVP 542
Query: 131 SVSSINRIIRTKVQQPFH-----PTPD-------------------GSGTGVAAPGHTIX 166
SVSSINRI+R ++ + P P G+ G+ +
Sbjct: 543 SVSSINRIVRNRIGSKGNGGKNVPQPSMVENASVMKLESNEQTNIFGTAGGIPIQLSQLP 722
Query: 167 XXXXXXXXXXXXNDPVGSYSINGILG-IPRSNG 198
GSYSI+GILG IP+SNG
Sbjct: 723 GGFQTALQTQIPRSGNGSYSISGILGIIPQSNG 821
>emb|AJ251933.1|PMA251933 Phallusia mammillata mRNA for transcription factor (pax258B gene)
Length = 3321
Score = 220 bits (561), Expect = 2e-55
Identities = 106/131 (80%), Positives = 118/131 (89%), Gaps = 1/131 (0%)
Frame = +1
Query: 16 GHG-GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
GHG GVNQLGG++VNGRPLP+ +RQRIV L+HQGVRPCDISRQLRVSHGCVSKIL RYYE
Sbjct: 1237 GHGSGVNQLGGMYVNGRPLPEPIRQRIVNLSHQGVRPCDISRQLRVSHGCVSKILARYYE 1416
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI+PGVIGGSKPKVAT VV KI EYKR NPTMFAWEIRDRLL++GIC +TVPSVSS
Sbjct: 1417 TGSIRPGVIGGSKPKVATQDVVVKITEYKRDNPTMFAWEIRDRLLSDGICTGETVPSVSS 1596
Query: 135 INRIIRTKVQQ 145
INRI+R+K +
Sbjct: 1597 INRIVRSKTSE 1629
>gb|AF154554.1|AF154554 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-4 allele, partial cds
Length = 1207
Score = 220 bits (561), Expect = 2e-55
Identities = 124/264 (46%), Positives = 153/264 (56%), Gaps = 20/264 (7%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 33 SDMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQSQAEAKVPGLD 212
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIRD
Sbjct: 213 SQNVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRD 392
Query: 117 RLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXX 176
RLL+EG+C ND +PSVSSINR++R +G
Sbjct: 393 RLLSEGVCTNDNIPSVSSINRVLRNLASDKQQMGSEG----------MYDKLRMLNGQTA 542
Query: 177 XXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR------G 230
G Y + G P G + + + S+ + S +R L+
Sbjct: 543 TWGSRPGWYPGTSVPGQPAQEGCQPQEGVGENTNSISSNGEDSDEAQMRLQLKRKLQRNR 722
Query: 231 DTFTQQQLEALDRVFERPSYPDVF 254
+FTQ+Q+EAL++ FER YPDVF
Sbjct: 723 TSFTQEQIEALEKEFERTHYPDVF 794
>emb|AJ223442.1|BFL223442 Branchiostoma floridae Pax6 gene (AmphiPax6), clone 4.1
Length = 4041
Score = 220 bits (560), Expect = 2e-55
Identities = 125/256 (48%), Positives = 161/256 (62%), Gaps = 18/256 (7%)
Frame = +2
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
H GVNQLGGVFVNGRPLPD RQ+IVELAHQG RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 584 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHQGARPCDISRLLQVSNGCVSKILGRYYETG 763
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIRDRLL+EGIC N+ +PSVSSIN
Sbjct: 764 SIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSEGICTNENIPSVSSIN 943
Query: 137 RIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 196
R++R + +A + P P++
Sbjct: 944 RVLRNLASGEKNTLQSLQ----SADPQMLEKLRLLNGNAWPHPGPWPYPPSTAGAPPPQT 1111
Query: 197 NGE---KRKRD-------------EDVSEGSVPNGDSQSSVDSLRKHLRGD--TFTQQQL 238
NG K++ D +D +GS + D + L++ L+ + +FTQ+Q+
Sbjct: 1112NGNVTTKKEGDGKLASQILTLHGYQDQGDGSNDDSDEAQARLRLKRKLQRNRTSFTQEQI 1291
Query: 239 EALDRVFERPSYPDVF 254
EAL++ FER YPDVF
Sbjct: 1292EALEKEFERTHYPDVF 1339
>emb|X95594.1|LSPAX6GEN L.sanguineus pax6 gene
Length = 1483
Score = 219 bits (558), Expect = 3e-55
Identities = 132/274 (48%), Positives = 160/274 (58%), Gaps = 22/274 (8%)
Frame = +2
Query: 3 MHCKADPFSAMHP--GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
+H P + P GH GVNQLGGVFVNGRPLPD RQRIVELAH G RPCDISR L+V
Sbjct: 362 LHFSLLPLMSTFPSAGHSGVNQLGGVFVNGRPLPDSTRQRIVELAHSGARPCDISRILQV 541
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
S+GCV+KILGRYYETGSI+P IGGSKP+VATP+VV KIA YKR+ P++FAWEIRDRLL+
Sbjct: 542 SNGCVTKILGRYYETGSIRPRAIGGSKPRVATPEVVGKIAHYKRECPSIFAWEIRDRLLS 721
Query: 121 EGICDNDTVPSVSSINRIIRT-------KVQQPFHPTPDGSGTGVAAPG-----HTIXXX 168
+ +C+ D +PSVSSINR++R ++ Q G G A G H
Sbjct: 722 DAVCNQDNIPSVSSINRVLRNLASENQKQLGQSSMYDKLGLLNGQACRGLIRGTHRTLTA 901
Query: 169 XXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKRD----EDVSEGSVPNG---DSQSSV 221
P P + K++ D D G PNG + Q +
Sbjct: 902 MTGLTAHHPQYPPQPQ--------PPPISPTKKESDGHSSADSHSGDTPNGNESEEQMRI 1057
Query: 222 DSLRKHLRGDT-FTQQQLEALDRVFERPSYPDVF 254
RK R T FT Q+EAL++ FER YPDVF
Sbjct: 1058RLKRKLQRNRTSFTNAQIEALEKEFERTHYPDVF 1159
>ref|NM_079899.1| Drosophila melanogaster twin of eyeless (toy), mRNA
Length = 1734
Score = 219 bits (557), Expect = 4e-55
Identities = 122/271 (45%), Positives = 155/271 (57%), Gaps = 26/271 (9%)
Frame = +1
Query: 10 FSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69
F GH G+NQLGGV+VNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKIL
Sbjct: 76 FGCSTAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKIL 255
Query: 70 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTV 129
GRYYETGSIKP IGGSKP+VAT VV KIA+YKR+ P++FAWEIRDRLL+E +C++D +
Sbjct: 256 GRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNI 435
Query: 130 PSVSSINRIIRTKVQQPFHPT------------------------PDGSGTG-VAAPGHT 164
PSVSSINR++R Q P + T + P
Sbjct: 436 PSVSSINRVLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAA 615
Query: 165 IXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSL 224
D V + + + +N D + S + DSQ +
Sbjct: 616 SVVTSPANLSGQADRDDVQKRELQFSVEVSHTNSHDSTSDGNSEHNSSGDEDSQMRLRLK 795
Query: 225 RKHLRGDT-FTQQQLEALDRVFERPSYPDVF 254
RK R T F+ +Q+++L++ FER YPDVF
Sbjct: 796 RKLQRNRTSFSNEQIDSLEKEFERTHYPDVF 888
>gb|AF134350.1|AF134350 Drosophila melanogaster transcription factor Toy (toy) mRNA,
complete cds
Length = 1734
Score = 219 bits (557), Expect = 4e-55
Identities = 122/271 (45%), Positives = 155/271 (57%), Gaps = 26/271 (9%)
Frame = +1
Query: 10 FSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69
F GH G+NQLGGV+VNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKIL
Sbjct: 76 FGCSTAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKIL 255
Query: 70 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTV 129
GRYYETGSIKP IGGSKP+VAT VV KIA+YKR+ P++FAWEIRDRLL+E +C++D +
Sbjct: 256 GRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNI 435
Query: 130 PSVSSINRIIRTKVQQPFHPT------------------------PDGSGTG-VAAPGHT 164
PSVSSINR++R Q P + T + P
Sbjct: 436 PSVSSINRVLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAA 615
Query: 165 IXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSL 224
D V + + + +N D + S + DSQ +
Sbjct: 616 SVVTSPANLSGQADRDDVQKRELQFSVEVSHTNSHDSTSDGNSEHNSSGDEDSQMRLRLK 795
Query: 225 RKHLRGDT-FTQQQLEALDRVFERPSYPDVF 254
RK R T F+ +Q+++L++ FER YPDVF
Sbjct: 796 RKLQRNRTSFSNEQIDSLEKEFERTHYPDVF 888
>gb|AY051487.1| Drosophila melanogaster GH14454 full length cDNA
Length = 2277
Score = 219 bits (557), Expect = 4e-55
Identities = 122/271 (45%), Positives = 155/271 (57%), Gaps = 26/271 (9%)
Frame = +2
Query: 10 FSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69
F GH G+NQLGGV+VNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKIL
Sbjct: 566 FGCSTAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKIL 745
Query: 70 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTV 129
GRYYETGSIKP IGGSKP+VAT VV KIA+YKR+ P++FAWEIRDRLL+E +C++D +
Sbjct: 746 GRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNI 925
Query: 130 PSVSSINRIIRTKVQQPFHPT------------------------PDGSGTG-VAAPGHT 164
PSVSSINR++R Q P + T + P
Sbjct: 926 PSVSSINRVLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAA 1105
Query: 165 IXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSL 224
D V + + + +N D + S + DSQ +
Sbjct: 1106SVVTSPANLSGQADRDDVQKRELQFSVEVSHTNSHDSTSDGNSEHNSSGDEDSQMRLRLK 1285
Query: 225 RKHLRGDT-FTQQQLEALDRVFERPSYPDVF 254
RK R T F+ +Q+++L++ FER YPDVF
Sbjct: 1286RKLQRNRTSFSNEQIDSLEKEFERTHYPDVF 1378
>emb|Y09975.1|PMPAX6 P.mammillata mRNA for Pax-6
Length = 1741
Score = 218 bits (556), Expect = 6e-55
Identities = 120/246 (48%), Positives = 157/246 (63%), Gaps = 5/246 (2%)
Frame = +1
Query: 14 HPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
H GH GVNQLGG+FVNGRPLPD +RQ+IVE AH G RPCDISR L+VS+GCVSKIL RYY
Sbjct: 196 HKGHSGVNQLGGMFVNGRPLPDSIRQKIVEFAHNGARPCDISRILQVSNGCVSKILARYY 375
Query: 74 ETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVS 133
ETG+I+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIRDRLL E +C+ + +PSVS
Sbjct: 376 ETGTIRPRAIGGSKPRVATPQVVNKIAMYKRECPSIFAWEIRDRLLNEAVCNAENIPSVS 555
Query: 134 SINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGI 193
SINR++R +G V + G++ N +S + +
Sbjct: 556 SINRVLRNL---------NGENGRVFSEGNS-----------PNKNHLPDDWSSSNWYDL 675
Query: 194 PRSNGEKRKRDEDVS----EGSVPNGDSQSSVDSLRKHLRGDT-FTQQQLEALDRVFERP 248
+ N E+VS + D+ + + RK R T F+Q+Q+EAL++ FER
Sbjct: 676 NKQNHRHESSSEEVSVCNKDDQQMTKDTNARLQLKRKLQRNRTSFSQEQVEALEKEFERT 855
Query: 249 SYPDVF 254
YPDVF
Sbjct: 856 HYPDVF 873
>dbj|AB007462.1|AB007462 Ephydatia fluviatilis mRNA for Pax-2/5/8, complete cds
Length = 2422
Score = 218 bits (556), Expect = 6e-55
Identities = 103/130 (79%), Positives = 118/130 (90%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G GGVNQLGG+FVNGRPLP+ +R++IVEL+ GVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 107 GQGGVNQLGGLFVNGRPLPESIRRKIVELSQNGVRPCDISRQLRVSHGCVSKILGRYYET 286
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVAT KVV KI +YK++NP++FAWEIRDRLL +G+CD VPSVSSI
Sbjct: 287 GSIKPGVIGGSKPKVATSKVVLKIEDYKQENPSIFAWEIRDRLLQDGVCDKVNVPSVSSI 466
Query: 136 NRIIRTKVQQ 145
NRI+RT+ QQ
Sbjct: 467 NRIVRTRAQQ 496
>dbj|AK012493.1|AK012493 Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2700066P22:paired box gene 3,
full insert sequence
Length = 1637
Score = 218 bits (556), Expect = 6e-55
Identities = 125/251 (49%), Positives = 152/251 (59%), Gaps = 8/251 (3%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 189 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 368
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 369 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 548
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+RI+R+K G G A ++ +SI+GIL
Sbjct: 549 ISRILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS-- 668
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDS-----LRKHLRGD--TFTQQQLEALDRVFER 247
S P D S +DS L++ RG TFT +QLE L+R FER
Sbjct: 669 -------------ERASAPQSDEGSDIDSEPDLPLKRKQRGSRTTFTAEQLEELERAFER 809
Query: 248 PSYPDVFQTSE 258
YPD++ E
Sbjct: 810 THYPDIYTREE 842
>gb|AF254422.2|AF254422 Mus musculus paired box transcription factor PAX7 (Pax7) mRNA,
partial cds
Length = 4244
Score = 218 bits (556), Expect = 6e-55
Identities = 143/340 (42%), Positives = 182/340 (53%), Gaps = 2/340 (0%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 70 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 249
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDRLL +G CD TVPSVSS
Sbjct: 250 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSS 429
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+R++R K + D G G + +SI+GILG
Sbjct: 430 ISRVLRIKFGK---KEDDEEGDKKEEDG-----------------EKKAKHSIDGILG-- 543
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
G + DV +S+ + RK R TFT +QLE L++ FER YPD+
Sbjct: 544 -DKGNRLDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDI 696
Query: 254 FQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMAST 313
+ E + + E + + AN N P +P T
Sbjct: 697 YTREELAQRTKLTEARVQVWFSN-RRARWRKQAGANQLAAFNHLLPGGFP--------PT 849
Query: 314 TLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 353
+P PP+ P +YPT+T+ S+ G+ PQ
Sbjct: 850 GMPTLPPYQLP--DSTYPTTTI------SQDGGSTVHRPQ 945
>gb|AF411465.1|AF411465 Petromyzon marinus transcription factor Pax7 mRNA, complete cds
Length = 2190
Score = 218 bits (555), Expect = 8e-55
Identities = 141/329 (42%), Positives = 181/329 (54%), Gaps = 2/329 (0%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVELAH GVRPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 284 GQGRVNQLGGVFINGRPLPNHIRHKIVELAHHGVRPCVISRQLRVSHGCVSKILCRYQET 463
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKP+ VA+ V KI EYKR+NP MF+WEIRDRLL +G+CD +VPSVSS
Sbjct: 464 GSIRPGAIGGSKPRQVASTDVERKIEEYKRENPGMFSWEIRDRLLKDGVCDRASVPSVSS 643
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+RI+R K + +G+ D +SI+GILG
Sbjct: 644 ISRILRAKFGKRDEEEEEGA----------------EKKDFGDDGDKKAKHSIDGILG-- 769
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
K V + S + DS+ + RK R TFT +QLE L++ FER YPD+
Sbjct: 770 ------DKAGSTVEDSS--DVDSEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDI 925
Query: 254 FQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMAST 313
+ E + + E + S+ G N + + G AS
Sbjct: 926 YTREELAQRTKLTEARVQVWF-------SNRRARWRKQAGANQLAAFNHLIPGGFPPAS- 1081
Query: 314 TLPGYPPHVPPTGQGSYPTSTLAGMVPGS 342
+PG PP+ P +G YP S + + G+
Sbjct: 1082-MPGLPPYQLP--EGPYPGSGIPQVDTGT 1159
>emb|AJ223444.1|BFL223444 Branchiostoma floridae Pax6 gene (AmphiPax6), clone 12.2
Length = 2884
Score = 218 bits (555), Expect = 8e-55
Identities = 124/256 (48%), Positives = 161/256 (62%), Gaps = 18/256 (7%)
Frame = +2
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
H GVNQLGGVFV+GRPLPD RQ+IVELAHQG RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 650 HSGVNQLGGVFVDGRPLPDSTRQKIVELAHQGARPCDISRLLQVSNGCVSKILGRYYETG 829
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIRDRLL+EGIC N+ +PSVSSIN
Sbjct: 830 SIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSEGICTNENIPSVSSIN 1009
Query: 137 RIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 196
R++R + +A + P P++
Sbjct: 1010RVLRNLASGEKNTLQSLQ----SADPQMLEKLRLLNGNAWPHPGPWPYPPSTAGAPPPQT 1177
Query: 197 NGE---KRKRD-------------EDVSEGSVPNGDSQSSVDSLRKHLRGD--TFTQQQL 238
NG K++ D +D +GS + D + L++ L+ + +FTQ+Q+
Sbjct: 1178NGNVTTKKEGDGKLASQILTLHGYQDQGDGSNDDSDEAQARLRLKRKLQRNRTSFTQEQI 1357
Query: 239 EALDRVFERPSYPDVF 254
EAL++ FER YPDVF
Sbjct: 1358EALEKEFERTHYPDVF 1405
>gb|U02368.1|HSU02368 Human PAX3/forkhead transcription factor gene fusion mRNA, complete
cds
Length = 3200
Score = 216 bits (551), Expect = 2e-54
Identities = 123/245 (50%), Positives = 153/245 (62%), Gaps = 2/245 (0%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 148 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 327
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 328 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 507
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+RI+R+K G G A ++ +SI+GIL
Sbjct: 508 ISRILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS-E 630
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R TFT +QLE L+R FER YPD+
Sbjct: 631 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 786
Query: 254 FQTSE 258
+ E
Sbjct: 787 YTREE 801
>ref|NM_008781.1| Mus musculus paired box gene 3 (Pax3), mRNA
Length = 2347
Score = 216 bits (551), Expect = 2e-54
Identities = 123/245 (50%), Positives = 153/245 (62%), Gaps = 2/245 (0%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 397 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 576
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 577 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 756
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+RI+R+K G G A ++ +SI+GIL
Sbjct: 757 ISRILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS-E 879
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R TFT +QLE L+R FER YPD+
Sbjct: 880 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 1035
Query: 254 FQTSE 258
+ E
Sbjct: 1036YTREE 1050
>emb|X59358.1|MMPAX3R Mouse Pax-3 gene for a DNA binding protein, involved in early
neurogenesis
Length = 2347
Score = 216 bits (551), Expect = 2e-54
Identities = 123/245 (50%), Positives = 153/245 (62%), Gaps = 2/245 (0%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 397 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 576
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 577 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 756
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+RI+R+K G G A ++ +SI+GIL
Sbjct: 757 ISRILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS-E 879
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R TFT +QLE L+R FER YPD+
Sbjct: 880 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 1035
Query: 254 FQTSE 258
+ E
Sbjct: 1036YTREE 1050
>gb|AF000673.1|AF000673 Coturnix coturnix paired-box transcription factor protein (Pax-3)
mRNA, partial cds
Length = 3080
Score = 216 bits (551), Expect = 2e-54
Identities = 124/245 (50%), Positives = 152/245 (61%), Gaps = 2/245 (0%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 87 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 266
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+N MF+WEIR+RLL +G+CD +TVPSVSS
Sbjct: 267 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENAGMFSWEIRERLLKDGVCDRNTVPSVSS 446
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+RI+R+K G G A D +SI+GIL
Sbjct: 447 ISRILRSKF---------GKGEEEEA---------ELERKEAEEGDKKAKHSIDGILS-E 569
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R TFT +QLE L+R FER YPD+
Sbjct: 570 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 725
Query: 254 FQTSE 258
+ E
Sbjct: 726 YTREE 740
>gb|AF178854.1|AF178854 Synthetic construct Pax3-forkhead fusion protein (Pax3/FKHR) mRNA,
complete cds
Length = 2725
Score = 216 bits (551), Expect = 2e-54
Identities = 123/245 (50%), Positives = 153/245 (62%), Gaps = 2/245 (0%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 308 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 487
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 488 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 667
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+RI+R+K G G A ++ +SI+GIL
Sbjct: 668 ISRILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS-E 790
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R TFT +QLE L+R FER YPD+
Sbjct: 791 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 946
Query: 254 FQTSE 258
+ E
Sbjct: 947 YTREE 961
>dbj|AK014337.1|AK014337 Mus musculus 14, 17 days embryo head cDNA, RIKEN full-length
enriched library, clone:3230402M02:paired box gene 3,
full insert sequence
Length = 1891
Score = 216 bits (551), Expect = 2e-54
Identities = 123/245 (50%), Positives = 153/245 (62%), Gaps = 2/245 (0%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 189 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 368
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 369 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 548
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+RI+R+K G G A ++ +SI+GIL
Sbjct: 549 ISRILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS-E 671
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R TFT +QLE L+R FER YPD+
Sbjct: 672 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 827
Query: 254 FQTSE 258
+ E
Sbjct: 828 YTREE 842
>gb|AF014366.1|AF014366 Danio rerio transcription factor PAX3 (pax3) mRNA, complete cds
Length = 2734
Score = 216 bits (550), Expect = 3e-54
Identities = 124/245 (50%), Positives = 150/245 (60%), Gaps = 2/245 (0%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 376 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 555
Query: 76 GSIKPGVIGGSKPKVA-TPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK + TP V KI EYKR+NP MF+WEIRD+LL +GICD + VPSVSS
Sbjct: 556 GSIRPGAIGGSKPKQSTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDGICDRNNVPSVSS 735
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+R++R K G N+ +SI+GILG
Sbjct: 736 ISRMLRCK---------------FGGNGDEDEDDDEVEKREIEENERRAKHSIDGILG-- 864
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
R EGS + DS+ + RK R TFT +QLE L+R FER YPD+
Sbjct: 865 -------DRSSHSDEGS--DVDSEPGLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 1017
Query: 254 FQTSE 258
+ E
Sbjct: 1018YTREE 1032
>ref|NM_013945.1| Homo sapiens paired box gene 7 (PAX7), transcript variant 2, mRNA
Length = 2255
Score = 216 bits (550), Expect = 3e-54
Identities = 140/340 (41%), Positives = 179/340 (52%), Gaps = 2/340 (0%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 699 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 878
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDRLL +G CD TVPSVSS
Sbjct: 879 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSS 1058
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+R++R K + + +SI+GILG
Sbjct: 1059ISRVLRIKFGK--------------------KEEEDEADKKEDDGEKKAKHSIDGILG-- 1172
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
G + DV +S+ + RK R TFT +QLE L++ FER YPD+
Sbjct: 1173-DKGNRLDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDI 1325
Query: 254 FQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMAST 313
+ E + + E + + AN N P +P T
Sbjct: 1326YTREELAQRTKLTEARVQVWFSN-RRARWRKQAGANQLAAFNHLLPGGFP--------PT 1478
Query: 314 TLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 353
+P PP+ P +YPT+T+ S+ G+ PQ
Sbjct: 1479GMPTLPPYQLP--DSTYPTTTI------SQDGGSTVHRPQ 1574
>dbj|D87838.1|D87838 Gallus gallus mRNA for PAX7 protein, complete cds
Length = 2132
Score = 215 bits (548), Expect = 5e-54
Identities = 140/340 (41%), Positives = 179/340 (52%), Gaps = 2/340 (0%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 285 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 464
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDRLL +G CD TVPSVSS
Sbjct: 465 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSS 644
Query: 135 INRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 194
I+R++R K + + +SI+GILG
Sbjct: 645 ISRVLRIKFGK--------------------KEEEEDCDKKEEDGEKKAKHSIDGILG-- 758
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDV 253
G + DV +S+ + RK R TFT +QLE L++ FER YPD+
Sbjct: 759 -DKGNRLDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDI 911
Query: 254 FQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMAST 313
+ E + + E + + AN N P +P T
Sbjct: 912 YTREELAQRTKLTEARVQVWFSN-RRARWRKQAGANQLAAFNHLLPGGFP--------PT 1064
Query: 314 TLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 353
+P PP+ P +YPT+T+ S+ G+ PQ
Sbjct: 1065GMPTLPPYQLP--DSTYPTTTI------SQDGGSTVHRPQ 1160
>gb|AE003466.1|AE003466 Drosophila melanogaster genomic scaffold 142000013386038 section 15 of
15, complete sequence
Length = 283099
Score = 214 bits (545), Expect = 1e-53
Identities = 152/427 (35%), Positives = 210/427 (48%), Gaps = 43/427 (10%)
Frame = +2
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P S + PG G VNQLGGVF+NGRPLP+ +R++IVE+A GVRPC ISRQLRVSHGCVSKI
Sbjct: 43661 PVSLILPGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKI 43840
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
L R+ ETGSI+PGVIGGSKP+VATP + +I E K+ P +F+WEIR +L+ G+CD
Sbjct: 43841 LNRFQETGSIRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQN 44020
Query: 129 VPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSIN 188
PSVSSI+R++R GSGT S+SI+
Sbjct: 44021 APSVSSISRLLRGS---------SGSGT---------------------------SHSID 44092
Query: 189 GILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFER 247
GILG G ED SE D++ SV RK R TF+ Q++AL+R+F R
Sbjct: 44093 GILG----GGAGSVGSEDESE-----DDAEPSVQLKRKQRRSRTTFSNDQIDALERIFAR 44245
Query: 248 PSYPDVFQTSEHIKS--------------------EQGNEYSLPALTPGLDEVKSSLSTS 287
YPDV+ E +S +Q N +P+ P ++ +TS
Sbjct: 44246 TQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTS 44425
Query: 288 A--NPDLGTNVSGPQTYP--------------VVTGRDMASTTLPGYPPHVPPTGQGSYP 331
A P++G ++ Q++P V + +ST+ H P Q P
Sbjct: 44426 AAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQP 44605
Query: 332 TSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSS------PYYYSATSRGSAPP 385
+ GSEF + Y + +S P ++ + SA + GS P
Sbjct: 44606 GT-------GSEFMTSTYGVGSSNATYPSAAYSMPQTPATSAEQLRSQFASAAASGSHHP 44764
Query: 386 TAAAAYD 392
+ +Y+
Sbjct: 44765 STWDSYN 44785
Score = 156 bits (395), Expect = 3e-36
Identities = 72/109 (66%), Positives = 92/109 (84%)
Frame = -2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S + G G VNQLGGVF+NGRPLP+ +R +IVE+A GVRPC ISRQLRVSHGCVSKIL
Sbjct: 32088 SNLPTGQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILN 31909
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLL 119
RY ETGSI+PGVIGGSKPKV +P++ +I E +++NP++F+WEIR++L+
Sbjct: 31908 RYQETGSIRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLI 31762
Score = 47.8 bits (112), Expect = 0.002
Identities = 49/160 (30%), Positives = 66/160 (40%), Gaps = 6/160 (3%)
Frame = -1
Query: 203 RDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDVFQTSEHIK 261
RD D+S+ +S+ + RK R TFT +QLEAL+R F R YPDV+ E +
Sbjct: 22372 RDSDISDT-----ESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQ 22208
Query: 262 SEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPH 321
+ E + S +N L SG V G A+ L GY P
Sbjct: 22207 TTALTEARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVGVGLSGATAPL-GYGPL 22031
Query: 322 VPPTGQGSYP----TSTLAGMVPGSEFSGN-PYSHPQYTT 356
+ G P T+T AGM G + + P SH T
Sbjct: 22030 GVGSMAGYSPAPGTTATGAGMNDGVHHAAHAPSSHHSAAT 21911
>gb|AC007582.7| Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone
BACR17E16, complete sequence
Length = 180162
Score = 214 bits (545), Expect = 1e-53
Identities = 152/427 (35%), Positives = 210/427 (48%), Gaps = 43/427 (10%)
Frame = -3
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P S + PG G VNQLGGVF+NGRPLP+ +R++IVE+A GVRPC ISRQLRVSHGCVSKI
Sbjct: 129439 PVSLILPGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKI 129260
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
L R+ ETGSI+PGVIGGSKP+VATP + +I E K+ P +F+WEIR +L+ G+CD
Sbjct: 129259 LNRFQETGSIRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQN 129080
Query: 129 VPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSIN 188
PSVSSI+R++R GSGT S+SI+
Sbjct: 129079 APSVSSISRLLRGS---------SGSGT---------------------------SHSID 129008
Query: 189 GILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFER 247
GILG G ED SE D++ SV RK R TF+ Q++AL+R+F R
Sbjct: 129007 GILG----GGAGSVGSEDESE-----DDAEPSVQLKRKQRRSRTTFSNDQIDALERIFAR 128855
Query: 248 PSYPDVFQTSEHIKS--------------------EQGNEYSLPALTPGLDEVKSSLSTS 287
YPDV+ E +S +Q N +P+ P ++ +TS
Sbjct: 128854 TQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTS 128675
Query: 288 A--NPDLGTNVSGPQTYP--------------VVTGRDMASTTLPGYPPHVPPTGQGSYP 331
A P++G ++ Q++P V + +ST+ H P Q P
Sbjct: 128674 AAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQP 128495
Query: 332 TSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSS------PYYYSATSRGSAPP 385
+ GSEF + Y + +S P ++ + SA + GS P
Sbjct: 128494 GT-------GSEFMTSTYGVGSSNATYPSAAYSMPQTPATSAEQLRSQFASAAASGSHHP 128336
Query: 386 TAAAAYD 392
+ +Y+
Sbjct: 128335 STWDSYN 128315
Score = 156 bits (395), Expect = 3e-36
Identities = 72/109 (66%), Positives = 92/109 (84%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S + G G VNQLGGVF+NGRPLP+ +R +IVE+A GVRPC ISRQLRVSHGCVSKIL
Sbjct: 141012 SNLPTGQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILN 141191
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLL 119
RY ETGSI+PGVIGGSKPKV +P++ +I E +++NP++F+WEIR++L+
Sbjct: 141192 RYQETGSIRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLI 141338
Score = 47.8 bits (112), Expect = 0.002
Identities = 49/160 (30%), Positives = 66/160 (40%), Gaps = 6/160 (3%)
Frame = +1
Query: 203 RDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDVFQTSEHIK 261
RD D+S+ +S+ + RK R TFT +QLEAL+R F R YPDV+ E +
Sbjct: 150727 RDSDISDT-----ESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQ 150891
Query: 262 SEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPH 321
+ E + S +N L SG V G A+ L GY P
Sbjct: 150892 TTALTEARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVGVGLSGATAPL-GYGPL 151068
Query: 322 VPPTGQGSYP----TSTLAGMVPGSEFSGN-PYSHPQYTT 356
+ G P T+T AGM G + + P SH T
Sbjct: 151069 GVGSMAGYSPAPGTTATGAGMNDGVHHAAHAPSSHHSAAT 151188
>emb|AJ000938.1|OLJ000938 Oryzias latipes, Pax6 gene
Length = 2178
Score = 214 bits (544), Expect = 1e-53
Identities = 126/291 (43%), Positives = 156/291 (53%), Gaps = 47/291 (16%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 387 SMMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHDEVQVLDSE 566
Query: 60 ------------------------------VSHGCVSKILGRYYETGSIKPGVIGGSKPK 89
VS+GCVSKILGRYYETGSI+P IGGSKP+
Sbjct: 567 KV*YLFEPS*LFQ*KS*IMYVNCVFLFPIQVSNGCVSKILGRYYETGSIRPRAIGGSKPR 746
Query: 90 VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHP 149
VATP+VV KIA+YKR+ P++FAWEIRDRLL+EGIC ND +PSVSSINR++R +
Sbjct: 747 VATPEVVAKIAQYKRECPSIFAWEIRDRLLSEGICTNDNIPSVSSINRVLRNLASEKQQM 926
Query: 150 TPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKRDEDVSE 209
DG G Y + G P +G +++ +
Sbjct: 927 GADG----------MYDKLRMLNGQTGTWGTRPGWYPGTSVPGQPNQDGCQQQDGAGENT 1076
Query: 210 GSVPNGDSQSSVDSLRKHLR------GDTFTQQQLEALDRVFERPSYPDVF 254
S+ + S +R L+ +FTQ+Q+EAL++ FER YPDVF
Sbjct: 1077NSISSNGEDSEETQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 1229
>ref|NM_078832.1| Drosophila melanogaster paired (prd), mRNA
Length = 2348
Score = 212 bits (540), Expect = 4e-53
Identities = 145/378 (38%), Positives = 195/378 (51%), Gaps = 5/378 (1%)
Frame = +2
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M+ G G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY
Sbjct: 239 MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRY 418
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR++L+ EG+CD T PSV
Sbjct: 419 QETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSV 598
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
S+I+R++R + P + A G +D G + NG
Sbjct: 599 SAISRLVRGR-DAPLDNDMSSASGSPAGDG--------TKASSSCGSDVSGGHHNNG--- 742
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR-GDTFTQQQLEALDRVFERPSYP 251
+ DED+S+ +S+ + RK R TF+ QL+ L+R FER YP
Sbjct: 743 --------KPSDEDISD-----CESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYP 883
Query: 252 DVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSG--PQTYPVVTGRD 309
D++ E + LT +V S + T+VSG P
Sbjct: 884 DIYTREELAQRTN--------LTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHV 1039
Query: 310 MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALL 369
AS++LP S P+ M+PGS Y QY Y S A
Sbjct: 1040AASSSLPSV--------VSSVPSMAPLAMMPGSLDPATVYQQ-QYDFYGSHANISVSA-- 1186
Query: 370 SSPYYYSATSRG--SAPP 385
++P S S G + PP
Sbjct: 1187AAPMASSNLSPGITTTPP 1240
>gb|AY059447.1| Drosophila melanogaster GH22686 full length cDNA
Length = 2348
Score = 212 bits (540), Expect = 4e-53
Identities = 145/378 (38%), Positives = 195/378 (51%), Gaps = 5/378 (1%)
Frame = +2
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M+ G G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY
Sbjct: 239 MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRY 418
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR++L+ EG+CD T PSV
Sbjct: 419 QETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSV 598
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
S+I+R++R + P + A G +D G + NG
Sbjct: 599 SAISRLVRGR-DAPLDNDMSSASGSPAGDG--------TKASSSCGSDVSGGHHNNG--- 742
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR-GDTFTQQQLEALDRVFERPSYP 251
+ DED+S+ +S+ + RK R TF+ QL+ L+R FER YP
Sbjct: 743 --------KPSDEDISD-----CESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYP 883
Query: 252 DVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSG--PQTYPVVTGRD 309
D++ E + LT +V S + T+VSG P
Sbjct: 884 DIYTREELAQRTN--------LTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHV 1039
Query: 310 MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALL 369
AS++LP S P+ M+PGS Y QY Y S A
Sbjct: 1040AASSSLPSV--------VSSVPSMAPLAMMPGSLDPATVYQQ-QYDFYGSHANISVSA-- 1186
Query: 370 SSPYYYSATSRG--SAPP 385
++P S S G + PP
Sbjct: 1187AAPMASSNLSPGITTTPP 1240
>gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome 2L, region 33B-33C, BAC clone
BACR02B06, complete sequence
Length = 174314
Score = 212 bits (540), Expect = 4e-53
Identities = 145/378 (38%), Positives = 195/378 (51%), Gaps = 5/378 (1%)
Frame = -2
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M+ G G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY
Sbjct: 75988 MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRY 75809
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR++L+ EG+CD T PSV
Sbjct: 75808 QETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSV 75629
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
S+I+R++R + P + A G +D G + NG
Sbjct: 75628 SAISRLVRGR-DAPLDNDMSSASGSPAGDG--------TKASSSCGSDVSGGHHNNG--- 75485
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR-GDTFTQQQLEALDRVFERPSYP 251
+ DED+S+ +S+ + RK R TF+ QL+ L+R FER YP
Sbjct: 75484 --------KPSDEDISD-----CESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYP 75344
Query: 252 DVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSG--PQTYPVVTGRD 309
D++ E + LT +V S + T+VSG P
Sbjct: 75343 DIYTREELAQRTN--------LTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHV 75188
Query: 310 MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALL 369
AS++LP S P+ M+PGS Y QY Y S A
Sbjct: 75187 AASSSLPSV--------VSSVPSMAPLAMMPGSLDPATVYQQ-QYDFYGSHANISVSA-- 75041
Query: 370 SSPYYYSATSRG--SAPP 385
++P S S G + PP
Sbjct: 75040 AAPMASSNLSPGITTTPP 74987
>gb|AE003634.1|AE003634 Drosophila melanogaster genomic scaffold 142000013386055 section 27 of
63, complete sequence
Length = 264752
Score = 212 bits (540), Expect = 4e-53
Identities = 145/378 (38%), Positives = 195/378 (51%), Gaps = 5/378 (1%)
Frame = -1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M+ G G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY
Sbjct: 260156 MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRY 259977
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR++L+ EG+CD T PSV
Sbjct: 259976 QETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSV 259797
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
S+I+R++R + P + A G +D G + NG
Sbjct: 259796 SAISRLVRGR-DAPLDNDMSSASGSPAGDG--------TKASSSCGSDVSGGHHNNG--- 259653
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR-GDTFTQQQLEALDRVFERPSYP 251
+ DED+S+ +S+ + RK R TF+ QL+ L+R FER YP
Sbjct: 259652 --------KPSDEDISD-----CESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYP 259512
Query: 252 DVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSG--PQTYPVVTGRD 309
D++ E + LT +V S + T+VSG P
Sbjct: 259511 DIYTREELAQRTN--------LTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHV 259356
Query: 310 MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALL 369
AS++LP S P+ M+PGS Y QY Y S A
Sbjct: 259355 AASSSLPSV--------VSSVPSMAPLAMMPGSLDPATVYQQ-QYDFYGSHANISVSA-- 259209
Query: 370 SSPYYYSATSRG--SAPP 385
++P S S G + PP
Sbjct: 259208 AAPMASSNLSPGITTTPP 259155
>gb|M14548.1|DROPRD D.melanogaster paired gene (prd) encoding a segmentation protein,
complete cds
Length = 3042
Score = 212 bits (540), Expect = 4e-53
Identities = 145/378 (38%), Positives = 195/378 (51%), Gaps = 5/378 (1%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M+ G G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY
Sbjct: 922 MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRY 1101
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR++L+ EG+CD T PSV
Sbjct: 1102 QETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSV 1281
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
S+I+R++R + P + A G +D G + NG
Sbjct: 1282 SAISRLVRGR-DAPLDNDMSSASGSPAGDG--------TKASSSCGSDVSGGHHNNG--- 1425
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLR-GDTFTQQQLEALDRVFERPSYP 251
+ DED+S+ +S+ + RK R TF+ QL+ L+R FER YP
Sbjct: 1426 --------KPSDEDISD-----CESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYP 1566
Query: 252 DVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSG--PQTYPVVTGRD 309
D++ E + LT +V S + T+VSG P
Sbjct: 1567 DIYTREELAQRTN--------LTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHV 1722
Query: 310 MASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALL 369
AS++LP S P+ M+PGS Y QY Y S A
Sbjct: 1723 AASSSLPSV--------VSSVPSMAPLAMMPGSLDPATVYQQ-QYDFYGSHANISVSA-- 1869
Query: 370 SSPYYYSATSRG--SAPP 385
++P S S G + PP
Sbjct: 1870 AAPMASSNLSPGITTTPP 1923
>ref|NM_002584.1| Homo sapiens paired box gene 7 (PAX7), transcript variant 1, mRNA
Length = 2272
Score = 211 bits (537), Expect = 9e-53
Identities = 140/342 (40%), Positives = 179/342 (51%), Gaps = 4/342 (1%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 699 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 878
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS--V 132
GSI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDRLL +G CD TVPS V
Sbjct: 879 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 1058
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
SSI+R++R K + + +SI+GILG
Sbjct: 1059SSISRVLRIKFGK--------------------KEEEDEADKKEDDGEKKAKHSIDGILG 1178
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYP 251
G + DV +S+ + RK R TFT +QLE L++ FER YP
Sbjct: 1179---DKGNRLDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP 1325
Query: 252 DVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMA 311
D++ E + + E + + AN N P +P
Sbjct: 1326DIYTREELAQRTKLTEARVQVWFSN-RRARWRKQAGANQLAAFNHLLPGGFP-------- 1478
Query: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 353
T +P PP+ P +YPT+T+ S+ G+ PQ
Sbjct: 1479PTGMPTLPPYQLP--DSTYPTTTI------SQDGGSTVHRPQ 1580
>emb|X96743.1|HSPAX7M H.sapiens mRNA for paired box containing transcription factor, PAX7
Length = 2272
Score = 211 bits (537), Expect = 9e-53
Identities = 140/342 (40%), Positives = 179/342 (51%), Gaps = 4/342 (1%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 699 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 878
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS--V 132
GSI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDRLL +G CD TVPS V
Sbjct: 879 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 1058
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
SSI+R++R K + + +SI+GILG
Sbjct: 1059SSISRVLRIKFGK--------------------KEEEDEADKKEDDGEKKAKHSIDGILG 1178
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYP 251
G + DV +S+ + RK R TFT +QLE L++ FER YP
Sbjct: 1179---DKGNRLDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP 1325
Query: 252 DVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMA 311
D++ E + + E + + AN N P +P
Sbjct: 1326DIYTREELAQRTKLTEARVQVWFSN-RRARWRKQAGANQLAAFNHLLPGGFP-------- 1478
Query: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 353
T +P PP+ P +YPT+T+ S+ G+ PQ
Sbjct: 1479PTGMPTLPPYQLP--DSTYPTTTI------SQDGGSTVHRPQ 1580
>emb|Z35141.1|HSPAX7GE H.sapiens Pax-7 gene for transcription factor
Length = 1503
Score = 211 bits (537), Expect = 9e-53
Identities = 140/342 (40%), Positives = 179/342 (51%), Gaps = 4/342 (1%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 202 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 381
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS--V 132
GSI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDRLL +G CD TVPS V
Sbjct: 382 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 561
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
SSI+R++R K + + +SI+GILG
Sbjct: 562 SSISRVLRIKFGK--------------------KEEEDEADKKEDDGEKKAKHSIDGILG 681
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYP 251
G + DV +S+ + RK R TFT +QLE L++ FER YP
Sbjct: 682 ---DKGNRLDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP 828
Query: 252 DVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMA 311
D++ E + + E + + AN N P +P
Sbjct: 829 DIYTREELAQRTKLTEARVQVWFSN-RRARWRKQAGANQLAAFNHLLPGGFP-------- 981
Query: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 353
T +P PP+ P +YPT+T+ S+ G+ PQ
Sbjct: 982 PTGMPTLPPYQLP--DSTYPTTTI------SQDGGSTVHRPQ 1083
>ref|NM_079889.1| Drosophila melanogaster eyeless (ey), mRNA
Length = 2848
Score = 209 bits (533), Expect = 3e-52
Identities = 104/171 (60%), Positives = 123/171 (71%)
Frame = +2
Query: 14 HPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
H GH GVNQLGGVFV GRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYY
Sbjct: 191 HKGHSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYY 370
Query: 74 ETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVS 133
ETGSI+P IGGSKP+VAT +VV KI++YKR+ P++FAWEIRDRLL E +C ND +PSVS
Sbjct: 371 ETGSIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVS 550
Query: 134 SINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS 184
SINR++R Q GSG+ + G++I N GS
Sbjct: 551 SINRVLRNLAAQK-EQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGS 700
>emb|X79493.1|DMEYEL29 D.melanogaster ey mRNA (exons 2-9)
Length = 2848
Score = 209 bits (533), Expect = 3e-52
Identities = 104/171 (60%), Positives = 123/171 (71%)
Frame = +2
Query: 14 HPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
H GH GVNQLGGVFV GRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYY
Sbjct: 191 HKGHSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYY 370
Query: 74 ETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVS 133
ETGSI+P IGGSKP+VAT +VV KI++YKR+ P++FAWEIRDRLL E +C ND +PSVS
Sbjct: 371 ETGSIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVS 550
Query: 134 SINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGS 184
SINR++R Q GSG+ + G++I N GS
Sbjct: 551 SINRVLRNLAAQK-EQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGS 700
>gb|AF014370.1|AF014370 Danio rerio transcription factor PAX7E (pax7) mRNA, complete cds
Length = 2403
Score = 209 bits (533), Expect = 3e-52
Identities = 154/404 (38%), Positives = 203/404 (50%), Gaps = 30/404 (7%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 437 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 616
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP---- 130
GSI+PG IGGSKP+ VATP V +I EYKR+NP MF+WEIRD+LL +G+CD TVP
Sbjct: 617 GSIRPGAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEA 796
Query: 131 -SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
SVSSI+R++R + F D + +SI+G
Sbjct: 797 SSVSSISRVLRAR----FGKKDDDD----------------ECDKKDEDGEKKTKHSIDG 916
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERP 248
ILG G + DV +S+ + RK R TFT +QLE L++ FER
Sbjct: 917 ILG---DKGNRTDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERT 1063
Query: 249 SYPDVFQTSEHIK--------------------SEQGNEYSLPA---LTPGLDEVKSSLS 285
YPD++ E + +Q L A L PG
Sbjct: 1064HYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPG------GFP 1225
Query: 286 TSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFS 345
+ P L T TYP T S+TL P +PP+ S +G G S
Sbjct: 1226PTGMPTLPTYQLPESTYPSTTLSQDGSSTL-HRPQPLPPSSMHQGGLSADSGSAYG--LS 1396
Query: 346 GNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAPPTAAA 389
N ++ +++Y+E F +P +S + + S G +P +AA
Sbjct: 1397SNRHT---FSSYSET--FMSPT--ASSNHMNPVSNGLSPQVSAA 1507
>ref|NM_079139.1| Drosophila melanogaster gooseberry (gsb), mRNA
Length = 1284
Score = 209 bits (532), Expect = 3e-52
Identities = 151/429 (35%), Positives = 210/429 (48%), Gaps = 45/429 (10%)
Frame = +1
Query: 9 PFSAMHP--GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
P+ +P G G VNQLGGVF+NGRPLP+ +R++IVE+A GVRPC ISRQLRVSHGCVS
Sbjct: 28 PYFGGYPFQGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVS 207
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KIL R+ ETGSI+PGVIGGSKP+VATP + +I E K+ P +F+WEIR +L+ G+CD
Sbjct: 208 KILNRFQETGSIRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDK 387
Query: 127 DTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYS 186
PSVSSI+R++R GSGT S+S
Sbjct: 388 QNAPSVSSISRLLRGS---------SGSGT---------------------------SHS 459
Query: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVF 245
I+GILG G ED SE D++ SV RK R TF+ Q++AL+R+F
Sbjct: 460 IDGILG----GGAGSVGSEDESE-----DDAEPSVQLKRKQRRSRTTFSNDQIDALERIF 612
Query: 246 ERPSYPDVFQTSEHIKS--------------------EQGNEYSLPALTPGLDEVKSSLS 285
R YPDV+ E +S +Q N +P+ P ++ +
Sbjct: 613 ARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPT 792
Query: 286 TSA--NPDLGTNVSGPQTYP--------------VVTGRDMASTTLPGYPPHVPPTGQGS 329
TSA P++G ++ Q++P V + +ST+ H P Q
Sbjct: 793 TSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQ 972
Query: 330 YPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPALLSS------PYYYSATSRGSA 383
P + GSEF + Y + +S P ++ + SA + GS
Sbjct: 973 QPGT-------GSEFMTSTYGVGSSNATYPSAAYSMPQTPATSAEQLRSQFASAAASGSH 1131
Query: 384 PPTAAAAYD 392
P+ +Y+
Sbjct: 1132HPSTWDSYN 1158
>gb|AF053459.2|AMPAXC1 Acropora millepora PaxC transcription factor (PaxC) mRNA, complete
cds
Length = 1936
Score = 209 bits (532), Expect = 3e-52
Identities = 97/129 (75%), Positives = 113/129 (87%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
HGG+NQLGG FVNGRPLPD +R RIV+LA GVRPC+ISR+L VSHGCVSKILGR+YETG
Sbjct: 208 HGGINQLGGPFVNGRPLPDYIRHRIVQLAACGVRPCEISRRLLVSHGCVSKILGRFYETG 387
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI+PG IGGSKPKVATP VV+KI +YK+QNPT+FAWEIRDRL+ EG+CD + PSVSSIN
Sbjct: 388 SIRPGSIGGSKPKVATPPVVNKIVQYKQQNPTIFAWEIRDRLVEEGVCDRENTPSVSSIN 567
Query: 137 RIIRTKVQQ 145
RI+R K +
Sbjct: 568 RILRNKAAE 594
>gb|AF016885.1|AF016885 Paracentrotus lividus paired box protein (suPaxB) mRNA, complete
cds
Length = 3256
Score = 208 bits (530), Expect = 6e-52
Identities = 100/125 (80%), Positives = 113/125 (90%)
Frame = +2
Query: 19 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI 78
GVNQLGG F NGRPLP +RQ+IVELA +GVRPCDISRQL+VSHGCVSKIL R+YETGSI
Sbjct: 386 GVNQLGGCFANGRPLPIQIRQQIVELAREGVRPCDISRQLKVSHGCVSKILVRFYETGSI 565
Query: 79 KPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRI 138
KPGVIGGSKPKVAT +VV+KIA+YKR NPT+FAWEIRDRLL+E +C DTVPSVSSINRI
Sbjct: 566 KPGVIGGSKPKVATGEVVNKIADYKRDNPTIFAWEIRDRLLSENVCVKDTVPSVSSINRI 745
Query: 139 IRTKV 143
+R K+
Sbjct: 746 LRNKI 760
>gb|U20792.1|MMU20792 Mus musculus Pax7 mRNA, partial cds
Length = 872
Score = 207 bits (528), Expect = 1e-51
Identities = 139/322 (43%), Positives = 177/322 (54%), Gaps = 3/322 (0%)
Frame = +1
Query: 18 GGVNQLGGVFVNGRPLPDVVRQRIV-ELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
G VNQLGGVF+NGRPLP+ +R +IV E+AH G+RPC ISRQLRVSHGCVSKIL RY ETG
Sbjct: 1 GRVNQLGGVFINGRPLPNHIRHKIVVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETG 180
Query: 77 SIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
SI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDR L +G CD TVPSVSSI
Sbjct: 181 SIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRWLKDGHCDRSTVPSVSSI 360
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPR 195
+R++R K + D G G + +SI+GIL
Sbjct: 361 SRVLRIKFGK---KEDDEEGDKKEEDG-----------------EKKAKHSIDGIL---- 468
Query: 196 SNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDVF 254
G+K R + EGS +S+ + RK R TFT +QLE L++ FER YPD++
Sbjct: 469 --GDKGNR---LDEGS--GVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIY 627
Query: 255 QTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTT 314
E + + E + AN N P +P T
Sbjct: 628 TREELAQRTKLTEARFQVWFSN-RRARWRKQAGANQLAAFNHLLPGGFP--------PTG 780
Query: 315 LPGYPPHVPPTGQGSYPTSTLA 336
+P PP+ P +YPT+T++
Sbjct: 781 MPTLPPYQLP--DSTYPTTTIS 840
>gb|AF016886.1|AF016886 Strongylocentrotus purpuratus paired box protein (suPaxB) mRNA,
complete cds
Length = 4075
Score = 207 bits (528), Expect = 1e-51
Identities = 100/125 (80%), Positives = 111/125 (88%)
Frame = +1
Query: 19 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI 78
GVNQLGG F NGRPLP +R +IVELA +GVRPCDISRQL+VSHGCVSKIL R+YETGSI
Sbjct: 310 GVNQLGGCFANGRPLPTQIRTQIVELAREGVRPCDISRQLKVSHGCVSKILVRFYETGSI 489
Query: 79 KPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRI 138
KPGVIGGSKPKVAT VVDKIA+YKR NPT+FAWEIRDRLL+E IC +TVPSVSSINRI
Sbjct: 490 KPGVIGGSKPKVATRDVVDKIADYKRDNPTIFAWEIRDRLLSESICGKETVPSVSSINRI 669
Query: 139 IRTKV 143
+R K+
Sbjct: 670 LRNKI 684
>ref|NM_068112.1| paired box transcription factor
Length = 1056
Score = 207 bits (526), Expect = 2e-51
Identities = 100/145 (68%), Positives = 114/145 (77%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
H GVNQLGGVFVNGRPLPD +R +IVE++ G RPCDISRQL+VSHGCVSKILGRYY TG
Sbjct: 274 HTGVNQLGGVFVNGRPLPDTIRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYYSTG 453
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
S++PGVIGGSKPKVATP+VV+ IA YKR NPTMFAWEIR +L+ + IC + VPSVSSIN
Sbjct: 454 SVRPGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEENVPSVSSIN 633
Query: 137 RIIRTKVQQPFHPTPDGSGTGVAAP 161
RI+R K TP VA P
Sbjct: 634 RIVRNKSFMAQLATPTSVTPSVARP 708
>gb|AF053458.2|AF053458 Acropora millepora transcription factor Pax-A (PaxA) mRNA, complete
cds
Length = 4685
Score = 206 bits (525), Expect = 2e-51
Identities = 98/127 (77%), Positives = 109/127 (85%)
Frame = +2
Query: 14 HPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
H G GGVNQLGGVFVNGRPLPD +R RIVELAH GVRP +ISRQL VSHGCVSKILGRYY
Sbjct: 155 HRGPGGVNQLGGVFVNGRPLPDYMRHRIVELAHCGVRPSEISRQLLVSHGCVSKILGRYY 334
Query: 74 ETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVS 133
ETGS++PG IGGSKPKVATP+VV KI YK NP +FAWEIR+ LL++G+CD VPSVS
Sbjct: 335 ETGSVRPGAIGGSKPKVATPRVVSKILAYKEDNPCIFAWEIRNNLLSDGVCDKSNVPSVS 514
Query: 134 SINRIIR 140
SINRI+R
Sbjct: 515 SINRILR 535
>gb|AF014369.1|AF014369 Danio rerio transcription factor PAX7D (pax7) mRNA, complete cds
Length = 2317
Score = 206 bits (525), Expect = 2e-51
Identities = 152/399 (38%), Positives = 200/399 (50%), Gaps = 30/399 (7%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 437 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 616
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS--- 131
GSI+PG IGGSKP+ VATP V +I EYKR+NP MF+WEIRD+LL +G+CD TVPS
Sbjct: 617 GSIRPGAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEA 796
Query: 132 --VSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
VSSI+R++R + F D + +SI+G
Sbjct: 797 SSVSSISRVLRAR----FGKKDDDDECD----------------KKDEDGEKKTKHSIDG 916
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERP 248
ILG G + DV +S+ + RK R TFT +QLE L++ FER
Sbjct: 917 ILG---DKGNRTDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERT 1063
Query: 249 SYPDVFQTSEHIK--------------------SEQGNEYSLPA---LTPGLDEVKSSLS 285
YPD++ E + +Q L A L PG
Sbjct: 1064HYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPG------GFP 1225
Query: 286 TSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFS 345
+ P L T TYP T S+TL P +PP+ S +G G S
Sbjct: 1226PTGMPTLPTYQLPESTYPSTTLSQDGSSTL-HRPQPLPPSSMHQGGLSADSGSAYG--LS 1396
Query: 346 GNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAP 384
N ++ +++Y+E F +P +S + + S G +P
Sbjct: 1397SNRHT---FSSYSET--FMSPT--ASSNHMNPVSNGLSP 1492
>gb|AF014368.1|AF014368 Danio rerio transcription factor PAX7C (pax7) mRNA, complete cds
Length = 2225
Score = 206 bits (525), Expect = 2e-51
Identities = 152/399 (38%), Positives = 200/399 (50%), Gaps = 30/399 (7%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 437 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 616
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS--- 131
GSI+PG IGGSKP+ VATP V +I EYKR+NP MF+WEIRD+LL +G+CD TVPS
Sbjct: 617 GSIRPGAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEA 796
Query: 132 --VSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
VSSI+R++R + F D + +SI+G
Sbjct: 797 SSVSSISRVLRAR----FGKKDDDDECD----------------KKDEDGEKKTKHSIDG 916
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERP 248
ILG G + DV +S+ + RK R TFT +QLE L++ FER
Sbjct: 917 ILG---DKGNRTDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERT 1063
Query: 249 SYPDVFQTSEHIK--------------------SEQGNEYSLPA---LTPGLDEVKSSLS 285
YPD++ E + +Q L A L PG
Sbjct: 1064HYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPG------GFP 1225
Query: 286 TSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFS 345
+ P L T TYP T S+TL P +PP+ S +G G S
Sbjct: 1226PTGMPTLPTYQLPESTYPSTTLSQDGSSTL-HRPQPLPPSSMHQGGLSADSGSAYG--LS 1396
Query: 346 GNPYSHPQYTTYNEAWRFSNPALLSSPYYYSATSRGSAP 384
N ++ +++Y+E F +P +S + + S G +P
Sbjct: 1397SNRHT---FSSYSET--FMSPT--ASSNHMNPVSNGLSP 1492
>gb|U96196.1|CQU96196 Chrysaora quinquecirrha Pax-A2 (Pax-A2) gene, partial cds
Length = 381
Score = 206 bits (524), Expect = 3e-51
Identities = 98/125 (78%), Positives = 110/125 (87%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G GGVNQLGGVFVNGRPLPD +R RI+ELAH GVRP +ISRQL VSHGCVSKILGRYYET
Sbjct: 1 GPGGVNQLGGVFVNGRPLPDYMRHRIIELAHCGVRPSEISRQLLVSHGCVSKILGRYYET 180
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GS++PG IGGSKPKVATPKVV +I + K +NP MFAWEIR+ LL+EG+CDN VPSVSSI
Sbjct: 181 GSVRPGAIGGSKPKVATPKVVARIVKLKEENPCMFAWEIRNTLLSEGVCDNTNVPSVSSI 360
Query: 136 NRIIR 140
NRI+R
Sbjct: 361 NRILR 375
>gb|U96195.1|CQU96195 Chrysaora quinquecirrha Pax-A1 (Pax-A1) gene, partial cds
Length = 381
Score = 206 bits (524), Expect = 3e-51
Identities = 98/125 (78%), Positives = 110/125 (87%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G GGVNQLGGVFVNGRPLPD +R RI+ELAH GVRP +ISRQL VSHGCVSKILGRYYET
Sbjct: 1 GPGGVNQLGGVFVNGRPLPDYMRHRIIELAHCGVRPSEISRQLLVSHGCVSKILGRYYET 180
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GS++PG IGGSKPKVATPKVV +I + K +NP MFAWEIR+ LL+EG+CDN VPSVSSI
Sbjct: 181 GSVRPGAIGGSKPKVATPKVVARIVKLKEENPCMFAWEIRNTLLSEGVCDNTNVPSVSSI 360
Query: 136 NRIIR 140
NRI+R
Sbjct: 361 NRILR 375
>emb|AJ292077.1|MMU292077 Mus musculus partial mRNA for paired box protein (Pax6 gene), clone
PAX6-9Neu
Length = 1462
Score = 168 bits (426), Expect(2) = 3e-51
Identities = 97/227 (42%), Positives = 127/227 (55%), Gaps = 20/227 (8%)
Frame = +1
Query: 48 GVRPCDISRQLR--------------VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATP 93
G RPCDISR L+ VS+GCVSKILGRYYETGSI+P IGGSKP+VATP
Sbjct: 208 GARPCDISRILQTHADAKVQVLDNENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATP 387
Query: 94 KVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG 153
+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSVSSINR++R + DG
Sbjct: 388 EVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG 567
Query: 154 SGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVP 213
G Y + G P +G +++ + S+
Sbjct: 568 ----------MYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSIS 717
Query: 214 NGDSQSSVDSLRKHLR------GDTFTQQQLEALDRVFERPSYPDVF 254
+ S +R L+ +FTQ+Q+EAL++ FER YPDVF
Sbjct: 718 SNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 858
Score = 59.3 bits (142), Expect(2) = 3e-51
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQG 48
S+M H GVNQLGGVFVNGRPLPD RQ+IVELA G
Sbjct: 104 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAGPG 217
>gb|AF014367.1|AF014367 Danio rerio transcription factor PAX7A (pax7) mRNA, complete cds
Length = 2320
Score = 206 bits (523), Expect = 4e-51
Identities = 120/250 (48%), Positives = 150/250 (60%), Gaps = 7/250 (2%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 437 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 616
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP---- 130
GSI+PG IGGSKP+ VATP V +I EYKR+NP MF+WEIRD+LL +G+CD TVP
Sbjct: 617 GSIRPGAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEA 796
Query: 131 -SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
SVSSI+R++R + F D + +SI+G
Sbjct: 797 SSVSSISRVLRAR----FGKKDDDD----------------ECDKKDEDGEKKTKHSIDG 916
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERP 248
ILG G + DV +S+ + RK R TFT +QLE L++ FER
Sbjct: 917 ILG---DKGNRTDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERT 1063
Query: 249 SYPDVFQTSE 258
YPD++ E
Sbjct: 1064HYPDIYTREE 1093
>gb|AY071593.1| Drosophila melanogaster RE64348 full length cDNA
Length = 2250
Score = 205 bits (521), Expect = 7e-51
Identities = 144/356 (40%), Positives = 185/356 (51%), Gaps = 8/356 (2%)
Frame = +3
Query: 9 PFSAMHP--GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
P A +P G G VNQLGGVF+NGRPLP+ +R +IVE+A GVRPC ISRQLRVSHGCVS
Sbjct: 351 PLFAGYPFQGQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVS 530
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KIL RY ETGSI+PGVIGGSKPKV +P++ +I E +++NP++F+WEIR++L+ EG D
Sbjct: 531 KILNRYQETGSIRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD- 707
Query: 127 DTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYS 186
PS SSI+R++R GS G D Y+
Sbjct: 708 --PPSTSSISRLLR------------GSDRG--------------------SEDGRKDYT 785
Query: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVF 245
INGILG RD D+S+ +S+ + RK R TFT +QLEAL+R F
Sbjct: 786 INGILG---------GRDSDISD-----TESEPGIPLKRKQRRSRTTFTAEQLEALERAF 923
Query: 246 ERPSYPDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPDLGTNVSGPQTYPVV 305
R YPDV+ E ++ E + S +N L SG V
Sbjct: 924 SRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVG 1103
Query: 306 TGRDMASTTLPGYPPHVPPTGQGSYP----TSTLAGMVPGSEFSGN-PYSHPQYTT 356
G A+ L GY P + G P T+T AGM G + + P SH T
Sbjct: 1104VGLSGATAPL-GYGPLGVGSMAGYSPAPGTTATGAGMNDGVHHAAHAPSSHHSAAT 1268
>gb|U96193.1|HLU96193 Hydra littoralis Pax-A mRNA, complete cds
Length = 2303
Score = 203 bits (516), Expect = 3e-50
Identities = 101/131 (77%), Positives = 111/131 (84%)
Frame = +2
Query: 10 FSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69
FS PG GVNQLGGVFVNGRPLPD +R RI+ELA GVRP +ISRQL VSHGCVSKIL
Sbjct: 176 FSVNDPG--GVNQLGGVFVNGRPLPDYMRHRIIELAQCGVRPSEISRQLLVSHGCVSKIL 349
Query: 70 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTV 129
GRYYETGS++PG IGGSKPKVATPKVV +I + K +NP MFAWEIR+ LLAEGICDN V
Sbjct: 350 GRYYETGSVRPGAIGGSKPKVATPKVVCRIVKLKEENPCMFAWEIRNSLLAEGICDNGNV 529
Query: 130 PSVSSINRIIR 140
PSVSSINRI+R
Sbjct: 530 PSVSSINRILR 562
>ref|NM_079552.1| Drosophila melanogaster Paired box mesodermal (Pox-m), mRNA
Length = 1209
Score = 202 bits (514), Expect = 4e-50
Identities = 101/153 (66%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Frame = +1
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
P +G VNQLGGVFVNGRPLP+ R RIVELA G+RPCDISRQLRVSHGCVSKIL RY+E
Sbjct: 118 PQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHE 297
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI PG IGGSKP+V TPKVV+ I E K+++P +FAWEIRDRLL+EGICD VPSVSS
Sbjct: 298 TGSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSS 477
Query: 135 INRIIRTKVQQPFHPTPDGS--GTGVAAPGHTI 165
I+RI+R K+ H G+ G+G ++ G ++
Sbjct: 478 ISRILRNKLGSLGHQHTPGTVMGSGSSSGGGSV 576
>gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome 3R, region 85A-85A, BAC clone
BACR33N15, complete sequence
Length = 187701
Score = 202 bits (514), Expect = 4e-50
Identities = 101/153 (66%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Frame = +3
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
P +G VNQLGGVFVNGRPLP+ R RIVELA G+RPCDISRQLRVSHGCVSKIL RY+E
Sbjct: 140148 PQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHE 140327
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI PG IGGSKP+V TPKVV+ I E K+++P +FAWEIRDRLL+EGICD VPSVSS
Sbjct: 140328 TGSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSS 140507
Query: 135 INRIIRTKVQQPFHPTPDGS--GTGVAAPGHTI 165
I+RI+R K+ H G+ G+G ++ G ++
Sbjct: 140508 ISRILRNKLGSLGHQHTPGTVMGSGSSSGGGSV 140606
>gb|AE003678.2|AE003678 Drosophila melanogaster genomic scaffold 142000013386035 section 3 of
105, complete sequence
Length = 234138
Score = 202 bits (514), Expect = 4e-50
Identities = 101/153 (66%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Frame = -2
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
P +G VNQLGGVFVNGRPLP+ R RIVELA G+RPCDISRQLRVSHGCVSKIL RY+E
Sbjct: 121313 PQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHE 121134
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI PG IGGSKP+V TPKVV+ I E K+++P +FAWEIRDRLL+EGICD VPSVSS
Sbjct: 121133 TGSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSS 120954
Query: 135 INRIIRTKVQQPFHPTPDGS--GTGVAAPGHTI 165
I+RI+R K+ H G+ G+G ++ G ++
Sbjct: 120953 ISRILRNKLGSLGHQHTPGTVMGSGSSSGGGSV 120855
>emb|Y19195.1|MMUY19195 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-3NEU
Length = 1470
Score = 202 bits (514), Expect = 4e-50
Identities = 99/144 (68%), Positives = 115/144 (79%), Gaps = 14/144 (9%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------- 59
S+M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 104 SSMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLD 283
Query: 60 ---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRD 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRD
Sbjct: 284 NENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD 463
Query: 117 RLLAEGICDNDTVPSVSSINRIIR 140
RLL+EG+C ND +PSVSSINR++R
Sbjct: 464 RLLSEGVCTNDNIPSVSSINRVLR 535
Score = 41.6 bits (96), Expect = 0.13
Identities = 24/78 (30%), Positives = 39/78 (49%), Gaps = 6/78 (7%)
Frame = +3
Query: 183 GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGD------TFTQQ 236
G Y + G P +G +++ + S+ + S +R L+ +FTQ+
Sbjct: 633 GWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQE 812
Query: 237 QLEALDRVFERPSYPDVF 254
Q+EAL++ FER YPDVF
Sbjct: 813 QIEALEKEFERTHYPDVF 866
>dbj|AB017632.1|AB017632 Dugesia japonica mRNA for DjPax-6, complete cds
Length = 2006
Score = 202 bits (513), Expect = 6e-50
Identities = 123/298 (41%), Positives = 161/298 (53%), Gaps = 59/298 (19%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GH G+NQLGG+FVNGRPLPD RQRIVELAH G RPCDISR L+VS+GCVSKIL RYYET
Sbjct: 198 GHSGINQLGGMFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKILCRYYET 377
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSI+P IGGSKP+VAT VV KIA YKR+ P++F+WEIRDRLL EG+C+ D +PSVSSI
Sbjct: 378 GSIRPKAIGGSKPRVATSSVVSKIAAYKRECPSIFSWEIRDRLLQEGVCNQDNIPSVSSI 557
Query: 136 NRIIRTKVQQPFHPTPDGSG-------------TGVAAPGHTIXXXXXXXXXXXXXNDPV 182
NR++R+ + +G + AA
Sbjct: 558 NRVLRSLSNENQRHLVAATGMYDKLSLLSGQPWSTAAAHAAWYSSAAAAHGYASSTFPNC 737
Query: 183 GSYS-------ING------ILGIPRSN-------------GEKRKRDEDVSEGSVPNGD 216
G+Y ING + I +SN + + E SE S+ + +
Sbjct: 738 GAYGGLTGIGIINGMSTAHAVASINQSNSGVNNYHVQSTTDSSDKLKSEKYSE-SIAHSE 914
Query: 217 SQSSVDSLRKHLRG--------------------DTFTQQQLEALDRVFERPSYPDVF 254
S +S + +++ G +F+ QL++L++ FER YPDVF
Sbjct: 915 SNASSEPGNEYMSGVKSENDDMRIKLKRKLQRNRTSFSTDQLDSLEKEFERTHYPDVF 1088
>gb|AF002702.1|AF002702 Caenorhabditis elegans PAX protein (egl-38) mRNA, complete cds
Length = 1059
Score = 201 bits (512), Expect = 7e-50
Identities = 95/126 (75%), Positives = 108/126 (85%)
Frame = +3
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
H GVNQLGGVFVNGRPL D VR +IVE++ G RPCDISRQL+VSHGCVSKILGRYY TG
Sbjct: 240 HTGVNQLGGVFVNGRPLADTVRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYYSTG 419
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
S++PGVIGGSKPKVATP+VV+ IA YKR NPTMFAWEIR +L+ + IC + VPSVSSIN
Sbjct: 420 SVRPGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEENVPSVSSIN 599
Query: 137 RIIRTK 142
RI+R K
Sbjct: 600 RIVRNK 617
>ref|NM_069435.1| Human paired box protein like
Length = 870
Score = 201 bits (512), Expect = 7e-50
Identities = 95/126 (75%), Positives = 108/126 (85%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
H GVNQLGGVFVNGRPL D VR +IVE++ G RPCDISRQL+VSHGCVSKILGRYY TG
Sbjct: 88 HTGVNQLGGVFVNGRPLADTVRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYYSTG 267
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
S++PGVIGGSKPKVATP+VV+ IA YKR NPTMFAWEIR +L+ + IC + VPSVSSIN
Sbjct: 268 SVRPGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEENVPSVSSIN 447
Query: 137 RIIRTK 142
RI+R K
Sbjct: 448 RIVRNK 465
>gb|U73855.1|BTU73855 Bos taurus Pax6 mRNA, partial cds
Length = 438
Score = 200 bits (509), Expect = 2e-49
Identities = 98/142 (69%), Positives = 113/142 (79%), Gaps = 14/142 (9%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------- 59
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 180
Query: 60 -VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRL
Sbjct: 181 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 360
Query: 119 LAEGICDNDTVPSVSSINRIIR 140
L+EG+C ND +PSVSSINR++R
Sbjct: 361 LSEGVCTNDNIPSVSSINRVLR 426
>dbj|D84254.1|D84254 Halocynthia roretzi mRNA for Pax-37, complete cds
Length = 2573
Score = 200 bits (509), Expect = 2e-49
Identities = 112/244 (45%), Positives = 145/244 (58%), Gaps = 1/244 (0%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 148 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAAHGIRPCVISRQLRVSHGCVSKILCRYQET 327
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPG IGGSKPKV ++ KI +YK+ +P+MF+WEIRD+L+ EG+CD + P+VS+I
Sbjct: 328 GSIKPGAIGGSKPKVTNSEIESKIEQYKKDSPSMFSWEIRDQLIKEGLCDRSSAPTVSAI 507
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPR 195
+RI+R+K G T DP + +
Sbjct: 508 SRILRSK----------GCDT-----------------SNESAEDPENGNTNSD----TS 594
Query: 196 SNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRG-DTFTQQQLEALDRVFERPSYPDVF 254
SNG +R+ D + DS+ + RK R TF+ QLE L+R FER YPD++
Sbjct: 595 SNGATGEREADEGDSDC---DSEPELPLKRKQRRSRTTFSADQLEELERCFERTHYPDIY 765
Query: 255 QTSE 258
E
Sbjct: 766 TREE 777
>emb|X16992.1|DMPOXMESO D.melanogaster DNA for paired domain gene Pox meso
Length = 420
Score = 199 bits (506), Expect = 4e-49
Identities = 96/129 (74%), Positives = 110/129 (84%)
Frame = +1
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
P +G VNQLGGVFVNGRPLP+ R RIVELA G+RPCDISRQLRVSHGCVSKIL RY+E
Sbjct: 28 PQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHE 207
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI PG IGGSKP+V TPKVV+ I E K+++P +FAWEIRDRLL+EGICD VPSVSS
Sbjct: 208 TGSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSS 387
Query: 135 INRIIRTKV 143
I+RI+R K+
Sbjct: 388 ISRILRNKL 414
>gb|U40932.1|DRU40932 Danio rerio transcription factor Pax9b (Pax9) mRNA, complete cds
Length = 1777
Score = 199 bits (505), Expect = 5e-49
Identities = 99/153 (64%), Positives = 115/153 (74%), Gaps = 12/153 (7%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
+AM P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL
Sbjct: 146 NAMEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILA 325
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RY ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD +P
Sbjct: 326 RYNETGSILPGAIGGSKPRVTTPNVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKFNLP 505
Query: 131 SVSSINRIIRTKV------------QQPFHPTP 151
SVSSI+RI+R K+ +Q HP P
Sbjct: 506 SVSSISRILRNKIGNLSQQNQYESSKQASHPQP 604
>ref|NM_006194.1| Homo sapiens paired box gene 9 (PAX9), mRNA
Length = 1630
Score = 199 bits (505), Expect = 5e-49
Identities = 96/132 (72%), Positives = 109/132 (81%)
Frame = +2
Query: 12 AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71
AM P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 389 AMEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 568
Query: 72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131
Y ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPS
Sbjct: 569 YNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPS 748
Query: 132 VSSINRIIRTKV 143
VSSI+RI+R K+
Sbjct: 749 VSSISRILRNKI 784
>gb|AF443223.1|AF443223 Mus musculus PAX6 mRNA, partial cds, alternatively spliced
Length = 1058
Score = 199 bits (505), Expect = 5e-49
Identities = 119/243 (48%), Positives = 144/243 (58%), Gaps = 1/243 (0%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 180
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL + + +
Sbjct: 181 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLRNLASEKQQMGAD 360
Query: 133 SSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 192
+++ Q T G G + PG G + N I
Sbjct: 361 GMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP--------TQDGCQQQEGGGENTNSI-- 510
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDT-FTQQQLEALDRVFERPSYP 251
SNGE D D ++Q + RK R T FTQ+Q+EAL++ FER YP
Sbjct: 511 --SSNGE----DSD---------EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYP 645
Query: 252 DVF 254
DVF
Sbjct: 646 DVF 654
>gb|BC005794.1|BC005794 Mus musculus, paired box gene 9, clone MGC:11500 IMAGE:3707718,
mRNA, complete cds
Length = 1635
Score = 199 bits (505), Expect = 5e-49
Identities = 96/132 (72%), Positives = 109/132 (81%)
Frame = +1
Query: 12 AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71
AM P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 160 AMEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 339
Query: 72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131
Y ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPS
Sbjct: 340 YNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPS 519
Query: 132 VSSINRIIRTKV 143
VSSI+RI+R K+
Sbjct: 520 VSSISRILRNKI 555
>gb|BC001159.1|BC001159 Homo sapiens, paired box gene 9, clone MGC:1535 IMAGE:3534582,
mRNA, complete cds
Length = 1683
Score = 199 bits (505), Expect = 5e-49
Identities = 96/132 (72%), Positives = 109/132 (81%)
Frame = +1
Query: 12 AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71
AM P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 187 AMEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 366
Query: 72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131
Y ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPS
Sbjct: 367 YNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPS 546
Query: 132 VSSINRIIRTKV 143
VSSI+RI+R K+
Sbjct: 547 VSSISRILRNKI 582
>gb|U40931.1|DRU40931 Danio rerio transcription factor Pax9a (Pax9) mRNA, complete cds
Length = 1939
Score = 199 bits (505), Expect = 5e-49
Identities = 99/153 (64%), Positives = 115/153 (74%), Gaps = 12/153 (7%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
+AM P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL
Sbjct: 139 NAMEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILA 318
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RY ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD +P
Sbjct: 319 RYNETGSILPGAIGGSKPRVTTPNVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKFNLP 498
Query: 131 SVSSINRIIRTKV------------QQPFHPTP 151
SVSSI+RI+R K+ +Q HP P
Sbjct: 499 SVSSISRILRNKIGNLSQQNQYESSKQASHPQP 597
>ref|NM_011041.1| Mus musculus paired box gene 9 (Pax9), mRNA
Length = 2555
Score = 199 bits (505), Expect = 5e-49
Identities = 96/132 (72%), Positives = 109/132 (81%)
Frame = +3
Query: 12 AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71
AM P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 192 AMEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 371
Query: 72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131
Y ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPS
Sbjct: 372 YNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPS 551
Query: 132 VSSINRIIRTKV 143
VSSI+RI+R K+
Sbjct: 552 VSSISRILRNKI 587
>emb|X84000.1|MMRNAPAX9 M.musculus mRNA for Pax9
Length = 2555
Score = 199 bits (505), Expect = 5e-49
Identities = 96/132 (72%), Positives = 109/132 (81%)
Frame = +3
Query: 12 AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71
AM P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 192 AMEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 371
Query: 72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131
Y ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPS
Sbjct: 372 YNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPS 551
Query: 132 VSSINRIIRTKV 143
VSSI+RI+R K+
Sbjct: 552 VSSISRILRNKI 587
>ref|NM_008780.1| Mus musculus paired box gene 1 (Pax1), mRNA
Length = 2619
Score = 198 bits (504), Expect = 6e-49
Identities = 97/140 (69%), Positives = 111/140 (79%)
Frame = +1
Query: 12 AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71
AM +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 241 AMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 420
Query: 72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131
Y ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPS
Sbjct: 421 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 600
Query: 132 VSSINRIIRTKVQQPFHPTP 151
VSSI+RI+R K+ P P
Sbjct: 601 VSSISRILRNKIGSLAQPGP 660
>gb|M69222.1|MUSPAX1A Mouse Pax-1 protein (Pax-1) mRNA, complete cds
Length = 2619
Score = 198 bits (504), Expect = 6e-49
Identities = 97/140 (69%), Positives = 111/140 (79%)
Frame = +1
Query: 12 AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71
AM +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 241 AMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 420
Query: 72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131
Y ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPS
Sbjct: 421 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 600
Query: 132 VSSINRIIRTKVQQPFHPTP 151
VSSI+RI+R K+ P P
Sbjct: 601 VSSISRILRNKIGSLAQPGP 660
>gb|U20167.1|BFU20167 Branchiostoma floridae paired box transcription factor (AmphiPax-1)
mRNA, complete cds
Length = 2510
Score = 197 bits (501), Expect = 1e-48
Identities = 96/131 (73%), Positives = 108/131 (82%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M G VNQLGGVFVNGRPLP+ +R RIVELAH G+RPCDISRQLRVSHGCVSKIL RY
Sbjct: 205 MEQTFGEVNQLGGVFVNGRPLPNAIRLRIVELAHVGIRPCDISRQLRVSHGCVSKILARY 384
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI PG IGGSKP+V TP+VV I +YK +P +FAWEIRDRLLAEG+CD VPSV
Sbjct: 385 NETGSILPGAIGGSKPRVTTPEVVKAIKKYKTLDPGIFAWEIRDRLLAEGVCDKYNVPSV 564
Query: 133 SSINRIIRTKV 143
SSI+RI+R K+
Sbjct: 565 SSISRILRNKI 597
>ref|NM_006192.1| Homo sapiens paired box gene 1 (PAX1), mRNA
Length = 1323
Score = 197 bits (500), Expect = 2e-48
Identities = 96/139 (69%), Positives = 110/139 (79%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY
Sbjct: 1 MEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 180
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPSV
Sbjct: 181 NETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSV 360
Query: 133 SSINRIIRTKVQQPFHPTP 151
SSI+RI+R K+ P P
Sbjct: 361 SSISRILRNKIGSLAQPGP 417
>dbj|AB039660.1|AB039660 Lampetra japonica Pax-9 mRNA for paired box protein, complete cds
Length = 1977
Score = 196 bits (499), Expect = 2e-48
Identities = 96/150 (64%), Positives = 114/150 (76%)
Frame = +3
Query: 12 AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71
+M G VNQLGGVFVNGRPLP+ +R RIVE+A G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 369 SMDQSFGEVNQLGGVFVNGRPLPNAIRLRIVEMAQLGIRPCDISRQLRVSHGCVSKILAR 548
Query: 72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131
Y ETGSI PG IGGSKP+V TP VV+ I YK+++P +FAWEIRD+LLA+G+CD VPS
Sbjct: 549 YNETGSILPGAIGGSKPRVTTPNVVNHIRTYKQRDPGIFAWEIRDKLLADGVCDKYNVPS 728
Query: 132 VSSINRIIRTKVQQPFHPTPDGSGTGVAAP 161
VSSI+RI+R K+ P GS + P
Sbjct: 729 VSSISRILRNKIGNLSQPPNAGSSSHYDGP 818
>emb|AL035562.14|HS1065O2 Human DNA sequence from clone RP5-1065O2 on chromosome 20p11.21-11.23
Contains a copy of the RPL41 gene for ribosomal protein
L41, an ANT2 (fibroblast adenine nucleotide translocator 2
(ADP,ATP carrier protein, ADP/ATP translocase))
pseudogene, the PAX>
Length = 127192
Score = 196 bits (498), Expect = 3e-48
Identities = 95/135 (70%), Positives = 109/135 (80%)
Frame = -3
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
+G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 59975 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 59796
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPSVSSI+
Sbjct: 59795 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 59616
Query: 137 RIIRTKVQQPFHPTP 151
RI+R K+ P P
Sbjct: 59615 RILRNKIGSLAQPGP 59571
>gb|AC087416.16|AC087416 Mus musculus clone rp23-224l16 strain Black6, complete sequence
Length = 183347
Score = 196 bits (498), Expect = 3e-48
Identities = 95/135 (70%), Positives = 109/135 (80%)
Frame = -3
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
+G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 18606 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 18427
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPSVSSI+
Sbjct: 18426 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 18247
Query: 137 RIIRTKVQQPFHPTP 151
RI+R K+ P P
Sbjct: 18246 RILRNKIGSLAQPGP 18202
>emb|AJ133503.1|MMU133503 Mus musculus pax1 gene, exons 1 and 2 (and joined CDS)
Length = 1285
Score = 196 bits (498), Expect = 3e-48
Identities = 95/135 (70%), Positives = 109/135 (80%)
Frame = +2
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
+G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 509 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 688
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPSVSSI+
Sbjct: 689 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 868
Query: 137 RIIRTKVQQPFHPTP 151
RI+R K+ P P
Sbjct: 869 RILRNKIGSLAQPGP 913
>gb|AF285175.1|AF285175 Mus musculus PAX1 gene, complete cds
Length = 17615
Score = 196 bits (498), Expect = 3e-48
Identities = 95/135 (70%), Positives = 109/135 (80%)
Frame = +2
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
+G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 5891 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 6070
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPSVSSI+
Sbjct: 6071 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 6250
Query: 137 RIIRTKVQQPFHPTP 151
RI+R K+ P P
Sbjct: 6251 RILRNKIGSLAQPGP 6295
>emb|X15044.1|HSHUP48 Homo sapiens HuP48 gene paired domain
Length = 769
Score = 196 bits (498), Expect = 3e-48
Identities = 95/135 (70%), Positives = 109/135 (80%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
+G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 250 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 429
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPSVSSI+
Sbjct: 430 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 609
Query: 137 RIIRTKVQQPFHPTP 151
RI+R K+ P P
Sbjct: 610 RILRNKIGSLAQPGP 654
>gb|BC006930.1|BC006930 Mus musculus, paired box gene 9, clone IMAGE:3599040, mRNA
Length = 2319
Score = 196 bits (497), Expect = 4e-48
Identities = 96/135 (71%), Positives = 110/135 (81%)
Frame = +2
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
PF+ P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKI
Sbjct: 839 PFA--EPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKI 1012
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
L RY ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD
Sbjct: 1013LARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYN 1192
Query: 129 VPSVSSINRIIRTKV 143
VPSVSSI+RI+R K+
Sbjct: 1193VPSVSSISRILRNKI 1237
>emb|AJ238381.1|HSA238381 Homo sapiens pax9 gene, exons 1-2 and joined CDS
Length = 1840
Score = 195 bits (496), Expect = 5e-48
Identities = 94/129 (72%), Positives = 107/129 (82%)
Frame = +1
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY E
Sbjct: 1201 PAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNE 1380
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPSVSS
Sbjct: 1381 TGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSS 1560
Query: 135 INRIIRTKV 143
I+RI+R K+
Sbjct: 1561 ISRILRNKI 1587
>gb|L09745.1|HUMPAX9 Homo sapiens paired-box containing (PAX9) gene, paired domain exon
Length = 667
Score = 195 bits (496), Expect = 5e-48
Identities = 94/129 (72%), Positives = 107/129 (82%)
Frame = +2
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY E
Sbjct: 23 PAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNE 202
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPSVSS
Sbjct: 203 TGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSS 382
Query: 135 INRIIRTKV 143
I+RI+R K+
Sbjct: 383 ISRILRNKI 409
>emb|X92652.1|CHPAX9 G.domesticus mRNA for ChPax9 protein
Length = 1524
Score = 195 bits (496), Expect = 5e-48
Identities = 94/129 (72%), Positives = 107/129 (82%)
Frame = +1
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY E
Sbjct: 1 PAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNE 180
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPSVSS
Sbjct: 181 TGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSS 360
Query: 135 INRIIRTKV 143
I+RI+R K+
Sbjct: 361 ISRILRNKI 387
>gb|M20978.1|MUSHBPAXA Mouse Pax 1 homeo box DNA region, partial cds
Length = 420
Score = 195 bits (496), Expect = 5e-48
Identities = 93/127 (73%), Positives = 107/127 (84%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
HG VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSK+L RY ETG
Sbjct: 34 HGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKMLARYNETG 213
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPSVSSI+
Sbjct: 214 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 393
Query: 137 RIIRTKV 143
RI+R K+
Sbjct: 394 RILRNKI 414
>emb|X82443.1|GGPAX9 Gallus gallus Pax-9 gene
Length = 807
Score = 195 bits (496), Expect = 5e-48
Identities = 94/129 (72%), Positives = 107/129 (82%)
Frame = +3
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY E
Sbjct: 102 PAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNE 281
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPSVSS
Sbjct: 282 TGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSS 461
Query: 135 INRIIRTKV 143
I+RI+R K+
Sbjct: 462 ISRILRNKI 488
>emb|AL079303.3|CNS00M8O Human chromosome 14 DNA sequence BAC R-964E11 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 199891
Score = 195 bits (496), Expect = 5e-48
Identities = 94/129 (72%), Positives = 107/129 (82%)
Frame = +3
Query: 15 PGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74
P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY E
Sbjct: 100515 PAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNE 100694
Query: 75 TGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
TGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPSVSS
Sbjct: 100695 TGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSS 100874
Query: 135 INRIIRTKV 143
I+RI+R K+
Sbjct: 100875 ISRILRNKI 100901
>dbj|AB020763.1|AB020763 Ptychodera flava mRNA for Pax19, complete cds
Length = 2892
Score = 195 bits (496), Expect = 5e-48
Identities = 94/131 (71%), Positives = 108/131 (81%)
Frame = +1
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY
Sbjct: 259 MEQTFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 438
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI PG IGGSKP+V TP VV+ I EYK+ +P +FAWEIRDRL+A+G+CD VPSV
Sbjct: 439 NETGSILPGAIGGSKPRVTTPTVVNHIKEYKQHDPGIFAWEIRDRLMADGVCDKYNVPSV 618
Query: 133 SSINRIIRTKV 143
SSI+RI+R K+
Sbjct: 619 SSISRILRNKI 651
>dbj|AB020762.1|AB020762 Ciona intestinalis mRNA for Pax19, complete cds
Length = 1698
Score = 195 bits (495), Expect = 7e-48
Identities = 140/372 (37%), Positives = 184/372 (48%), Gaps = 12/372 (3%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
+A + G VNQLGGVFVNGRPLP+ +R RI+ELA G+RPCDISRQLRVSHGCVSKIL
Sbjct: 115 AASNQTFGEVNQLGGVFVNGRPLPNALRLRIIELAQLGIRPCDISRQLRVSHGCVSKILA 294
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RY ETGSI PG IGGSKP+V TP VV+ I +YK ++P +FAWEIRDRLL++ +CD VP
Sbjct: 295 RYNETGSILPGAIGGSKPRVTTPGVVNAIKDYKVRDPGIFAWEIRDRLLSDAVCDKYNVP 474
Query: 131 SVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 190
SVSSI+RI+R K+ HP + V N P+ ++ +
Sbjct: 475 SVSSISRILRNKIGNVLHPNNPLNPNYVPISNIENSTPPQSTNMRPTYNSPIYNHYM--- 645
Query: 191 LGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPSY 250
+P + GS P S+ + LRG F Q QL+ +
Sbjct: 646 --VPPTGKPNMPNAPPTIRGS-PMPCHPFYSHSVTEILRGSRFDQPQLQG--------TA 792
Query: 251 PDVFQTSEHIKSEQGN--------EYSLPALTPGLDEVKSSLSTSANP----DLGTNVSG 298
P TSE I N S+P++ P L+E + P G G
Sbjct: 793 PSNSMTSESISVAPPNGSYHHQLLPVSVPSVIPKLEEWNNMTPYGVPPPTQVTTGHLNGG 972
Query: 299 PQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYN 358
++ PV RD+ T+L P + ++P STL P + PY N
Sbjct: 973 EKSSPV--SRDI--TSLQQSP--TSEENRSAHPLSTLYVTPP----ANTPYVTSAPQMAN 1122
Query: 359 EAWRFSNPALLS 370
+ + P L S
Sbjct: 1123NSHHYVTPGLHS 1158
>emb|AJ223441.1|BFL223441 Branchiostoma floridae Pax6 gene (AmphiPax6), clone J2
Length = 4654
Score = 195 bits (495), Expect = 7e-48
Identities = 116/256 (45%), Positives = 153/256 (59%), Gaps = 18/256 (7%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
H GVNQLGGVFV+GRPLPD RQ+IVELAHQG RPCDISR L+VS+G YYETG
Sbjct: 637 HSGVNQLGGVFVSGRPLPDSTRQKIVELAHQGARPCDISRLLQVSNG--------YYETG 792
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIRDRLL+EGIC N+ +PSVSSIN
Sbjct: 793 SIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSEGICTNENIPSVSSIN 972
Query: 137 RIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 196
R++R + +A + P P++
Sbjct: 973 RVLRNLASGEKNTLQSLQ----SADPQMLEKLRLLNGNAWPHPGPWPYPPSTAGAPPPQT 1140
Query: 197 NGE---KRKRD-------------EDVSEGSVPNGDSQSSVDSLRKHLRGD--TFTQQQL 238
NG K++ D +D +GS + D + L++ L+ + +FTQ+Q+
Sbjct: 1141NGNVTTKKEGDGKLASQILTLHGYQDQGDGSNDDSDEAQARLRLKRKLQRNRTSFTQEQI 1320
Query: 239 EALDRVFERPSYPDVF 254
EAL++ FER YPDVF
Sbjct: 1321EALEKEFERTHYPDVF 1368
>gb|U22046.1|GGU22046 Gallus gallus Pax-1 (GPX-1) gene, partial cds
Length = 1033
Score = 195 bits (495), Expect = 7e-48
Identities = 97/140 (69%), Positives = 111/140 (79%), Gaps = 3/140 (2%)
Frame = +1
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 76
+G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 88 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 267
Query: 77 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136
SI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPSVSSI+
Sbjct: 268 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 447
Query: 137 RIIRTKV---QQPFHPTPDG 153
RI+R K+ QP P G
Sbjct: 448 RILRNKIGSLSQPGGPYDGG 507
>gb|AF039402.1|AF039402 Gallus gallus paired box protein (Pax-9) mRNA, complete cds
Length = 1756
Score = 194 bits (493), Expect = 1e-47
Identities = 94/135 (69%), Positives = 106/135 (77%)
Frame = +3
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P M P G VNQLGGVFVNGRPLP +R RIVELA G+R CDISRQLR SHGCVSKI
Sbjct: 201 PLGGMEPAFGEVNQLGGVFVNGRPLPKAIRLRIVELAQLGIRTCDISRQLRFSHGCVSKI 380
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
L RY ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD
Sbjct: 381 LARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYN 560
Query: 129 VPSVSSINRIIRTKV 143
VPSVSSI+RI+R K+
Sbjct: 561 VPSVSSISRILRNKI 605
>emb|AJ238974.1|BLA238974 Branchiostoma lanceolatum partial amphipax1 gene, exons 1-2 and
joined CDS
Length = 2753
Score = 194 bits (493), Expect = 1e-47
Identities = 98/139 (70%), Positives = 110/139 (78%), Gaps = 2/139 (1%)
Frame = +1
Query: 7 ADPFSAMHPGH--GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGC 64
AD F P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGC
Sbjct: 2005 ADVFVVSPPEQTFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGC 2184
Query: 65 VSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGIC 124
VSKIL RY ETGSI PG IGGSKP+V TP+VV I +YK +P +FAWEIRDRLLAEG+C
Sbjct: 2185 VSKILARYNETGSILPGAIGGSKPRVTTPEVVKAIKKYKTLDPGIFAWEIRDRLLAEGVC 2364
Query: 125 DNDTVPSVSSINRIIRTKV 143
D VPSVSSI+RI+R K+
Sbjct: 2365 DKYNVPSVSSISRILRNKI 2421
>ref|NM_013942.1| Homo sapiens paired box gene 3 (Waardenburg syndrome 1) (PAX3),
transcript variant PAX3B, mRNA
Length = 841
Score = 194 bits (493), Expect = 1e-47
Identities = 93/128 (72%), Positives = 109/128 (84%), Gaps = 1/128 (0%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 231 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 410
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 411 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 590
Query: 135 INRIIRTK 142
I+RI+R+K
Sbjct: 591 ISRILRSK 614
>gb|S69370.1|S69370 PAX3B=transcription factor {alternatively spliced} [human, adult
cerebellum, mRNA, 841 nt]
Length = 841
Score = 194 bits (493), Expect = 1e-47
Identities = 93/128 (72%), Positives = 109/128 (84%), Gaps = 1/128 (0%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 231 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 410
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 411 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 590
Query: 135 INRIIRTK 142
I+RI+R+K
Sbjct: 591 ISRILRSK 614
>ref|NM_000438.2| Homo sapiens paired box gene 3 (Waardenburg syndrome 1) (PAX3),
transcript variant PAX3A, mRNA
Length = 1248
Score = 194 bits (493), Expect = 1e-47
Identities = 93/128 (72%), Positives = 109/128 (84%), Gaps = 1/128 (0%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 231 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 410
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 411 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 590
Query: 135 INRIIRTK 142
I+RI+R+K
Sbjct: 591 ISRILRSK 614
>gb|S69369.1|S69369 PAX3A=transcription factor [human, adult cerebellum, mRNA, 1248 nt]
Length = 1248
Score = 194 bits (493), Expect = 1e-47
Identities = 93/128 (72%), Positives = 109/128 (84%), Gaps = 1/128 (0%)
Frame = +3
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 231 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 410
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 411 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 590
Query: 135 INRIIRTK 142
I+RI+R+K
Sbjct: 591 ISRILRSK 614
>dbj|AB021141.1|AB021141 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-IV
Length = 3070
Score = 193 bits (491), Expect = 2e-47
Identities = 93/132 (70%), Positives = 108/132 (81%)
Frame = +2
Query: 18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 77
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 308 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 487
Query: 78 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINR 137
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIRDRLL++ ICD VPSVSSI+R
Sbjct: 488 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 667
Query: 138 IIRTKVQQPFHP 149
I+R K+ HP
Sbjct: 668 ILRNKIGNVLHP 703
>gb|AF266754.1|AF266754S1 Takifugu rubripes Pax9 (pax9) gene, exons 1 and 2
Length = 9695
Score = 193 bits (491), Expect = 2e-47
Identities = 95/134 (70%), Positives = 108/134 (79%)
Frame = +2
Query: 10 FSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69
F A P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL
Sbjct: 8705 FWAPEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKIL 8884
Query: 70 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTV 129
RY ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G CD +
Sbjct: 8885 ARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGGCDKFNL 9064
Query: 130 PSVSSINRIIRTKV 143
PSVSSI+RI+R K+
Sbjct: 9065 PSVSSISRILRNKI 9106
>dbj|AB021139.1|AB021139 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-II
Length = 2885
Score = 193 bits (491), Expect = 2e-47
Identities = 93/132 (70%), Positives = 108/132 (81%)
Frame = +2
Query: 18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 77
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 110 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 289
Query: 78 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINR 137
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIRDRLL++ ICD VPSVSSI+R
Sbjct: 290 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 469
Query: 138 IIRTKVQQPFHP 149
I+R K+ HP
Sbjct: 470 ILRNKIGNVLHP 505
>emb|AJ010498.1|GTI010498 Girardia tigrina mRNA for DtPax-6 protein
Length = 2123
Score = 193 bits (491), Expect = 2e-47
Identities = 89/129 (68%), Positives = 109/129 (83%)
Frame = +3
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
+ GH G+NQLGG+FVNGRPLPDV RQRI+EL+ G RPCDISR L+VS+GCVSKIL RY
Sbjct: 294 LRKGHSGINQLGGIFVNGRPLPDVTRQRIIELSQSGARPCDISRILQVSNGCVSKILCRY 473
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSIKP IGGSKP+VAT VV K+ YK+++P+MFAWEIRDR L +G+C+ D +PS+
Sbjct: 474 YETGSIKPKAIGGSKPRVATNTVVRKVTIYKQESPSMFAWEIRDRPLQDGVCNQDNLPSI 653
Query: 133 SSINRIIRT 141
SSINRI+R+
Sbjct: 654 SSINRILRS 680
>dbj|AB021142.1|AB021142 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-V
Length = 3172
Score = 193 bits (491), Expect = 2e-47
Identities = 93/132 (70%), Positives = 108/132 (81%)
Frame = +1
Query: 18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 77
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 307 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 486
Query: 78 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINR 137
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIRDRLL++ ICD VPSVSSI+R
Sbjct: 487 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 666
Query: 138 IIRTKVQQPFHP 149
I+R K+ HP
Sbjct: 667 ILRNKIGNVLHP 702
>dbj|AB021140.1|AB021140 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-III
Length = 2310
Score = 193 bits (491), Expect = 2e-47
Identities = 93/132 (70%), Positives = 108/132 (81%)
Frame = +2
Query: 18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 77
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 308 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 487
Query: 78 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINR 137
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIRDRLL++ ICD VPSVSSI+R
Sbjct: 488 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 667
Query: 138 IIRTKVQQPFHP 149
I+R K+ HP
Sbjct: 668 ILRNKIGNVLHP 703
>dbj|AB021143.1|AB021143 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-VI
Length = 4044
Score = 193 bits (491), Expect = 2e-47
Identities = 93/132 (70%), Positives = 108/132 (81%)
Frame = +1
Query: 18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 77
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 340 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 519
Query: 78 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINR 137
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIRDRLL++ ICD VPSVSSI+R
Sbjct: 520 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 699
Query: 138 IIRTKVQQPFHP 149
I+R K+ HP
Sbjct: 700 ILRNKIGNVLHP 735
>dbj|AB021138.1|AB021138 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-I
Length = 3117
Score = 193 bits (491), Expect = 2e-47
Identities = 93/132 (70%), Positives = 108/132 (81%)
Frame = +1
Query: 18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 77
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 343 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 522
Query: 78 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINR 137
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIRDRLL++ ICD VPSVSSI+R
Sbjct: 523 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 702
Query: 138 IIRTKVQQPFHP 149
I+R K+ HP
Sbjct: 703 ILRNKIGNVLHP 738
>emb|AJ311310.1|DJA311310 Dugesia japonica partial mRNA for Pax-6B protein
Length = 1801
Score = 192 bits (488), Expect = 4e-47
Identities = 89/126 (70%), Positives = 108/126 (85%)
Frame = +1
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GH G+NQLGG+FVNGRPLPDV RQRI+EL+ G RPCDISR L+VS+GCVSKIL RYY T
Sbjct: 4 GHSGINQLGGMFVNGRPLPDVTRQRIIELSQSGARPCDISRILQVSNGCVSKILCRYYGT 183
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKP IGGSKP+VAT VV K+ YK+++P+MFAWEIRDRLL +G+C+ D +PS+SSI
Sbjct: 184 GSIKPKAIGGSKPRVATNTVVRKVTIYKQESPSMFAWEIRDRLLQDGVCNQDNLPSISSI 363
Query: 136 NRIIRT 141
NRI+R+
Sbjct: 364 NRILRS 381
>dbj|AB007461.1|AB007461 Hydra magnipapillata mRNA for Pax-2/5/8, partial cds
Length = 1519
Score = 191 bits (485), Expect = 1e-46
Identities = 123/281 (43%), Positives = 157/281 (55%), Gaps = 22/281 (7%)
Frame = +2
Query: 33 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 92
L + VR++IVELAHQGVRPCDISRQLRVSHGCVSKIL R+YETGS++PGVIGGSKPKVAT
Sbjct: 2 LIEPVRRKIVELAHQGVRPCDISRQLRVSHGCVSKILSRFYETGSVRPGVIGGSKPKVAT 181
Query: 93 PKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPT-- 150
P VV KI EYK+ NPTMFAWEIRD+LL+E ICD+D+VPSVSSINRI+R ++ H +
Sbjct: 182 PSVVAKIQEYKQHNPTMFAWEIRDKLLSEQICDSDSVPSVSSINRIVRNRLGSSSHASMA 361
Query: 151 ----------PDGS----GTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG--IP 194
PD + G+ I GSYSI+GILG +P
Sbjct: 362 DLNSPLLKIDPDMTHYFVHPGLPIQIGAISTNFPGSIHAHLPRTTSGSYSISGILGMAVP 541
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHL----RGDTFTQQQLEALDRVFERPSY 250
S G S+ S+PN V + H+ +G+ Q+ E
Sbjct: 542 SSQGNLGTLIM-CSDYSIPN------VQQIHSHVLNDEKGNVHIMQEGE----------- 667
Query: 251 PDVFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSANPD 291
+ + +H NEY L + D +S S+ +N +
Sbjct: 668 --IAPSIDHPTQVNANEYVLESSDSFHDSSAASSSSLSNEE 784
>emb|X92850.1|HSRNAPAX9 H.sapiens mRNA for Pax9 protein
Length = 993
Score = 190 bits (482), Expect = 2e-46
Identities = 91/123 (73%), Positives = 104/123 (83%)
Frame = +1
Query: 21 NQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKP 80
NQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGSI P
Sbjct: 1 NQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILP 180
Query: 81 GVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR 140
G IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPSVSSI+RI+R
Sbjct: 181 GAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILR 360
Query: 141 TKV 143
K+
Sbjct: 361 NKI 369
>gb|M86927.1|DROPOXNUP Fruitfly pox neuro protein (pox neuro) mRNA, complete cds
Length = 2178
Score = 184 bits (468), Expect = 9e-45
Identities = 96/135 (71%), Positives = 108/135 (79%), Gaps = 2/135 (1%)
Frame = +3
Query: 8 DPFSAM-HPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
D SAM H G GVNQLGGVFVNGRPLPD VR+RIV+LA GVRPCDISRQL VSHGCVS
Sbjct: 549 DHISAMPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVS 728
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICD 125
KIL R+YETGSI+PG IGGSK K VATP VV KI K +N MFAWEIR++L + +CD
Sbjct: 729 KILTRFYETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCD 908
Query: 126 NDTVPSVSSINRIIR 140
+VPS+SSINRI+R
Sbjct: 909 PSSVPSISSINRILR 953
>emb|X58917.1|DMPOXNEUO D.melanogaster DNA fragment for paired domain gene Pox neuro
Length = 423
Score = 184 bits (468), Expect = 9e-45
Identities = 96/135 (71%), Positives = 108/135 (79%), Gaps = 2/135 (1%)
Frame = +1
Query: 8 DPFSAM-HPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
D SAM H G GVNQLGGVFVNGRPLPD VR+RIV+LA GVRPCDISRQL VSHGCVS
Sbjct: 4 DHISAMPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVS 183
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICD 125
KIL R+YETGSI+PG IGGSK K VATP VV KI K +N MFAWEIR++L + +CD
Sbjct: 184 KILTRFYETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCD 363
Query: 126 NDTVPSVSSINRIIR 140
+VPS+SSINRI+R
Sbjct: 364 PSSVPSISSINRILR 408
>ref|NM_057338.1| Drosophila melanogaster Paired box neural (Pox-n), transcript
variant Pox-n-P1|CDS, mRNA
Length = 1278
Score = 182 bits (463), Expect = 4e-44
Identities = 92/128 (71%), Positives = 104/128 (80%), Gaps = 1/128 (0%)
Frame = +1
Query: 14 HPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
H G GVNQLGGVFVNGRPLPD VR+RIV+LA GVRPCDISRQL VSHGCVSKIL R+Y
Sbjct: 7 HTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFY 186
Query: 74 ETGSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI+PG IGGSK K VATP VV KI K +N MFAWEIR++L + +CD +VPS+
Sbjct: 187 ETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSI 366
Query: 133 SSINRIIR 140
SSINRI+R
Sbjct: 367 SSINRILR 390
>gb|AF080573.1|AF080573 Homo sapiens B-cell specific transcription factor BSAP mRNA,
partial cds
Length = 411
Score = 182 bits (462), Expect = 5e-44
Identities = 96/143 (67%), Positives = 103/143 (71%), Gaps = 1/143 (0%)
Frame = +2
Query: 62 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAE 121
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+K AEYKRQNPTMFAWEIRDRLLAE
Sbjct: 2 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKFAEYKRQNPTMFAWEIRDRLLAE 181
Query: 122 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDP 181
+CDNDTVPSVSSINRIIR K+QQP V A H+I D
Sbjct: 182 RVCDNDTVPSVSSINRIIRPKLQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDS 340
Query: 182 VG-SYSINGILGIPRSNGEKRKR 203
G SYSI+GILGI + + KR
Sbjct: 341 AGSSYSISGILGITSPSADTNKR 409
>gb|AF241311.1|AF241311 Acropora millepora transcription factor PaxD (PaxD) mRNA, complete
cds
Length = 2092
Score = 178 bits (452), Expect = 7e-43
Identities = 103/269 (38%), Positives = 153/269 (56%), Gaps = 26/269 (9%)
Frame = +2
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP ++R +I+ELA GVRPCDISRQLRVSHGCVSKIL RY ET
Sbjct: 86 GQGKVNQLGGVFINGRPLPKLLRWKIIELAQMGVRPCDISRQLRVSHGCVSKILCRYQET 265
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
G++ PG++G ++P+ TP++ +KI +++++N +F+WE+RDRLL E IC TVPS+ +I
Sbjct: 266 GTVDPGIVGLNRPRDVTPEIENKIDQFRKENSGIFSWEVRDRLLRENICSKSTVPSLGAI 445
Query: 136 NRIIRTKVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPR 195
++I+++K+ + + A+ D V + ++ +
Sbjct: 446 SQILKSKI------VKENAWREEASLKKCDDTVNWRKKSSQDNEDEVDETRYDVVV---K 598
Query: 196 SNGEKRKRDED-----VSEGSVPNGDS----------------QSSVDS----LRKHLRG 230
E+ + +ED + SV N S SS+++ RK R
Sbjct: 599 EEEEEEEEEEDPPSPVTDQNSVRNSYSPDAGLKTLSTFSPSYTYSSLENDFFIARKQRRS 778
Query: 231 DT-FTQQQLEALDRVFERPSYPDVFQTSE 258
T FT QL AL++ F++ YPDV+ E
Sbjct: 779 RTKFTHAQLNALEKAFQKTQYPDVYTREE 865
>gb|M14944.1|DROPRD91 D.melanogaster paired mRNA clone BSH9, paired box region
Length = 420
Score = 177 bits (448), Expect = 2e-42
Identities = 84/134 (62%), Positives = 106/134 (78%), Gaps = 2/134 (1%)
Frame = +1
Query: 9 PFSAMHP--GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
P+ +P G G VNQLGGVF+NGRPLP+ +R++IVE+A GVRPC ISRQLRVSHGCVS
Sbjct: 4 PYFGGYPFQGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVS 183
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
KIL R+ ETGSI+PGVIGGSKP+VATP + +I E K+ P +F+WEIR +L+ G+CD
Sbjct: 184 KILNRFQETGSIRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDK 363
Query: 127 DTVPSVSSINRIIR 140
PSVSSI+R++R
Sbjct: 364 QNAPSVSSISRLLR 405
>ref|NM_072719.1| DNA-binding transcription factor
Length = 774
Score = 174 bits (440), Expect = 2e-41
Identities = 83/123 (67%), Positives = 100/123 (80%)
Frame = +1
Query: 20 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79
VNQLGGVFVNGRPLP +R +IVEL+ QG RPCDISRQL++SHGCVSKIL R+ E G+I
Sbjct: 193 VNQLGGVFVNGRPLPFEMRCKIVELSRQGTRPCDISRQLKISHGCVSKILTRFSENGTIM 372
Query: 80 PGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRII 139
PG IGGS+P+V TPKVV+ I KR +P +FAWEIRDRL++ ICD +PSVSSI+RI+
Sbjct: 373 PGTIGGSRPRVTTPKVVEYIRSLKRSDPGIFAWEIRDRLISADICDRANLPSVSSISRIL 552
Query: 140 RTK 142
R K
Sbjct: 553 RNK 561
>gb|AF104231.1|AF104231 Mus musculus paired-homeodomain transcription factor PAX4 (Pax4)
mRNA, complete cds
Length = 1135
Score = 172 bits (435), Expect = 6e-41
Identities = 136/407 (33%), Positives = 180/407 (43%), Gaps = 31/407 (7%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSKILG
Sbjct: 16 SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILG 195
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L EG+C D P
Sbjct: 196 RYYRTGVLEPKCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQDKAP 375
Query: 131 SVSSINRIIRT-KVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
SVSSINR++R + Q H T S V AP
Sbjct: 376 SVSSINRVLRALQEDQSLHWTQLRS-PAVLAP---------------------------- 468
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPS 249
+L P SN P G + H F+ Q EAL++ F+R
Sbjct: 469 VLPSPHSN------------CGAPRGPHPGT-----SHRNRTIFSPGQAEALEKEFQRGQ 597
Query: 250 YPD-------------------VFQTSEHIKSEQGNEYSLPALTPGLDEVKSSLSTSAN- 289
YPD V+ ++ K + + A PG + L+ N
Sbjct: 598 YPDSVARGKLAAATSLPEDTVRVWFSNRRAKWRRQEKLKWEAQLPGASQ---DLTVPKNS 768
Query: 290 PDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPG---SEFSG 346
P + + P + P S LP P PP Q G PG S+ S
Sbjct: 769 PGIISAQQSPGSVP--------SAALPVLEPLSPPFCQ------LCCGTAPGRCSSDTSS 906
Query: 347 NPYSHPQY-------TTYNEAWRFSNPALLSSPYYYSATSRGSAPPT 386
Y P + + F+ P L + P ++ G P T
Sbjct: 907 QAYLQPYWDCQSLLPVASSSYVEFAWPCLTTHPVHHLIGGPGQVPST 1047
>ref|NM_031799.1| Rattus norvegicus paired box gene 4 (Pax4), mRNA
Length = 1101
Score = 171 bits (434), Expect = 8e-41
Identities = 107/243 (44%), Positives = 133/243 (54%), Gaps = 1/243 (0%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSKILG
Sbjct: 46 SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILG 225
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AEG+C D P
Sbjct: 226 RYYRTGVLEPKGIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQRQLCAEGLCTQDKAP 405
Query: 131 SVSSINRIIRT-KVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
SVSSINR++R + Q H T S V AP
Sbjct: 406 SVSSINRVLRALQEDQRLHWTQLRS-PAVLAPA--------------------------- 501
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPS 249
L P SN E P G + H F+ Q EAL++ F+R
Sbjct: 502 -LPSPHSNCE------------APRGPHPGT-----SHRNRTIFSPGQAEALEKEFQRGQ 627
Query: 250 YPD 252
YPD
Sbjct: 628 YPD 636
>gb|AF053100.1|AF053100 Rattus norvegicus Pax4a mRNA, complete cds
Length = 1101
Score = 171 bits (434), Expect = 8e-41
Identities = 107/243 (44%), Positives = 133/243 (54%), Gaps = 1/243 (0%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSKILG
Sbjct: 46 SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILG 225
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AEG+C D P
Sbjct: 226 RYYRTGVLEPKGIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQRQLCAEGLCTQDKAP 405
Query: 131 SVSSINRIIRT-KVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
SVSSINR++R + Q H T S V AP
Sbjct: 406 SVSSINRVLRALQEDQRLHWTQLRS-PAVLAPA--------------------------- 501
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPS 249
L P SN E P G + H F+ Q EAL++ F+R
Sbjct: 502 -LPSPHSNCE------------APRGPHPGT-----SHRNRTIFSPGQAEALEKEFQRGQ 627
Query: 250 YPD 252
YPD
Sbjct: 628 YPD 636
>gb|AF053102.1|AF053102 Rattus norvegicus Pax4c mRNA, complete cds
Length = 818
Score = 171 bits (434), Expect = 8e-41
Identities = 107/243 (44%), Positives = 133/243 (54%), Gaps = 1/243 (0%)
Frame = +1
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSKILG
Sbjct: 46 SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILG 225
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AEG+C D P
Sbjct: 226 RYYRTGVLEPKGIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQRQLCAEGLCTQDKAP 405
Query: 131 SVSSINRIIRT-KVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
SVSSINR++R + Q H T S V AP
Sbjct: 406 SVSSINRVLRALQEDQRLHWTQLRS-PAVLAPA--------------------------- 501
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPS 249
L P SN E P G + H F+ Q EAL++ F+R
Sbjct: 502 -LPSPHSNCE------------APRGPHPGT-----SHRNRTIFSPGQAEALEKEFQRGQ 627
Query: 250 YPD 252
YPD
Sbjct: 628 YPD 636
>dbj|AB007460.1|AB007460 Hydra magnipapillata mRNA for pox neuro, partial cds
Length = 2011
Score = 171 bits (434), Expect = 8e-41
Identities = 83/108 (76%), Positives = 93/108 (85%)
Frame = +2
Query: 33 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 92
LPD +R RI+ELA GVRP +ISRQL VSHGCVSKILGRYYETGS++PG IGGSKPKVAT
Sbjct: 2 LPDYMRHRIIELAQCGVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVAT 181
Query: 93 PKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR 140
PKVV +I + K +NP MFAWEIR+ LLAEGICDN VPSVSSINRI+R
Sbjct: 182 PKVVCRIVKLKEENPCMFAWEIRNSLLAEGICDNGNVPSVSSINRILR 325
>dbj|AB010557.1|AB010557 Mus musculus mRNA for Pax4, complete cds
Length = 1295
Score = 171 bits (432), Expect = 1e-40
Identities = 105/243 (43%), Positives = 132/243 (54%), Gaps = 1/243 (0%)
Frame = +3
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSKILG
Sbjct: 204 SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILG 383
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L EG+C D P
Sbjct: 384 RYYRTGVLEPKCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQDKAP 563
Query: 131 SVSSINRIIRT-KVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
SVSSINR++R + Q H T S V AP
Sbjct: 564 SVSSINRVLRALQEDQSLHWTQLRS-PAVLAP---------------------------- 656
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPS 249
+L P SN P G + H F+ Q EAL++ F+R
Sbjct: 657 VLPSPHSN------------CGAPRGPHPGT-----SHRNRTIFSPGQAEALEKEFQRGQ 785
Query: 250 YPD 252
YPD
Sbjct: 786 YPD 794
>dbj|AB008912.1|AB008912 Mus musculus mRNA for Pax-4, complete cds
Length = 1324
Score = 171 bits (432), Expect = 1e-40
Identities = 105/243 (43%), Positives = 132/243 (54%), Gaps = 1/243 (0%)
Frame = +2
Query: 11 SAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
S G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSKILG
Sbjct: 236 SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILG 415
Query: 71 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVP 130
RYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L EG+C D P
Sbjct: 416 RYYRTGVLEPKCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQDKAP 595
Query: 131 SVSSINRIIRT-KVQQPFHPTPDGSGTGVAAPGHTIXXXXXXXXXXXXXNDPVGSYSING 189
SVSSINR++R + Q H T S V AP
Sbjct: 596 SVSSINRVLRALQEDQSLHWTQLRS-PAVLAP---------------------------- 688
Query: 190 ILGIPRSNGEKRKRDEDVSEGSVPNGDSQSSVDSLRKHLRGDTFTQQQLEALDRVFERPS 249
+L P SN P G + H F+ Q EAL++ F+R
Sbjct: 689 VLPSPHSN------------CGAPRGPHPGT-----SHRNRTIFSPGQAEALEKEFQRGQ 817
Query: 250 YPD 252
YPD
Sbjct: 818 YPD 826
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 12, 2002 2:19 AM
Number of letters in database: 566,364,212
Number of sequences in database: 1,171,752
Lambda K H
0.313 0.133 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,382,107,890
Number of Sequences: 1171752
Number of extensions: 39518291
Number of successful extensions: 217110
Number of sequences better than 10.0: 1062
Number of HSP's better than 10.0 without gapping: 77973
Number of HSP's successfully gapped in prelim test: 14091
Number of HSP's that attempted gapping in prelim test: 80119
Number of HSP's gapped (non-prelim): 171731
length of query: 394
length of database: 1,620,443,836
effective HSP length: 137
effective length of query: 257
effective length of database: 1,459,913,812
effective search space: 375197849684
effective search space used: 375197849684
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 80 (35.4 bits)