TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(853 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,164,257 sequences; 587,334,133 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB004650.1|AB004650 Chicken mRNA for CENP-C, clone CENP... 1554 0.0
dbj|AB004649.1|AB004649 Gallus gallus mRNA for CENP-C, comp... 1523 0.0
dbj|AB042324.1|AB042324 Gallus gallus CENP-C gene for centr... 439 e-121
ref|NM_007683.1| Mus musculus centromere autoantigen C (Cen... 196 1e-47
gb|U03113.1|MMCENPC Mus musculus Swiss centromeric protein ... 196 1e-47
ref|XM_084163.1| Homo sapiens centromere protein C 1 (CENPC... 187 3e-45
gb|U35657.1|OAU35657 Ovis aries centromere protein C (CENP-... 187 3e-45
ref|NM_001812.1| Homo sapiens centromere protein C 1 (CENPC... 187 3e-45
gb|M95724.1|HUMCENPRO H.sapiens centromere autoantigen C (C... 187 3e-45
ref|XM_017019.2| Homo sapiens similar to centromere protein... 125 2e-26
gb|AC010201.18| Homo sapiens 12 BAC RP11-1109F11 (Roswell P... 125 2e-26
gb|AC104806.3| Homo sapiens chromosome 4 clone RP11-584P21,... 70 9e-10
dbj|AK011004.1|AK011004 Mus musculus 13 days embryo liver c... 54 7e-05
gb|AE003519.2|AE003519 Drosophila melanogaster genomic scaf... 50 7e-04
gb|AC009372.5| Drosophila melanogaster 3L BAC RP98-48N4 (Ro... 50 7e-04
ref|NM_059022.1| helicase 50 0.001
gb|AC084654.1|CBRG45O23 Caenorhabditis briggsae cosmid G45O... 50 0.001
gb|AF134186.1|AF134186 Caenorhabditis elegans XNP-1 (xnp-1)... 50 0.001
gb|M25718.1|HUMRGRSAL Human rDNA and 4 Alu repeats 48 0.004
gb|U13369.1|HSU13369 Human ribosomal DNA complete repeating... 48 0.004
gb|M18740.1|HUMRGRSALU Human chromosomal t(X;21)(p21;p12) t... 48 0.004
gb|AC007688.15|AC007688 Homo sapiens 12p12-27.2-31.7 BAC RP... 46 0.018
emb|Z28327.1|SCYKR102W S.cerevisiae chromosome XI reading f... 45 0.041
emb|Z22779.1|BTCYLICA B.taurus cylicin mRNA 44 0.054
gb|AF067617.1|CELT04D1 Caenorhabditis elegans cosmid T04D1 44 0.070
gb|AF000196.1| Caenorhabditis elegans cosmid B0041, complet... 44 0.070
gb|M94389.1|SQDNF220A Squid neurofilament protein (NF220) m... 43 0.12
ref|NM_022869.1| Rattus norvegicus nucleolar phosphoprotein... 43 0.16
gb|M94287.1|RATNOP140A Rattus norvegicus nucleolar phosphop... 43 0.16
gb|M94288.1|RATNOP140B Rattus norvegicus nucleolar phosphop... 43 0.16
dbj|AK014498.1|AK014498 Mus musculus 14 days embryo liver c... 43 0.16
emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosom... 42 0.27
emb|AL035709.1|ATT28I19 Arabidopsis thaliana DNA chromosome... 42 0.27
ref|NM_119943.1| Arabidopsis thaliana chromosome 4 CHR4v12... 42 0.27
emb|AL132948.2|CEY39B6A Caenorhabditis elegans cosmid Y39B6... 42 0.35
ref|NM_072183.1| titin 42 0.35
ref|NM_075332.1| Caenorhabditis elegans 42 0.35
gb|U80022.2| Caenorhabditis elegans cosmid F12F3, complete ... 42 0.35
emb|AL132896.1|CEY39B6B Caenorhabditis elegans cosmid Y39B6... 42 0.35
ref|XM_032182.1| Homo sapiens adaptor-related protein compl... 41 0.45
gb|AF022152.1|AF022152 Homo sapiens AP-3 complex beta3B sub... 41 0.45
gb|AE003683.2|AE003683 Drosophila melanogaster genomic scaf... 41 0.45
ref|NM_004644.1| Homo sapiens adaptor-related protein compl... 41 0.45
gb|U37673.1|HSU37673 Human neuron-specific vesicle coat pro... 41 0.45
gb|AC009350.4|AC009350 Drosophila melanogaster, chromosome ... 41 0.45
gb|BC015040.1|BC015040 Homo sapiens, clone IMAGE:3910222, mRNA 41 0.59
gb|AF056936.1|AF056936 Plasmodium falciparum mature parasit... 41 0.59
ref|NM_026177.1| Mus musculus RIKEN cDNA 1200011I18 gene (1... 41 0.59
dbj|AK004707.1|AK004707 Mus musculus adult male lung cDNA, ... 41 0.59
gb|AC018470.11| Homo sapiens BAC clone RP11-572N21 from 2, ... 41 0.59
gb|AC009182.4|AC009182 Drosophila melanogaster, chromosome ... 40 0.78
gb|AY061628.1| Drosophila melanogaster SD10611 full length ... 40 0.78
gb|AE003462.1|AE003462 Drosophila melanogaster genomic scaf... 40 0.78
ref|NM_004882.1| Homo sapiens CBF1 interacting corepressor ... 40 0.78
gb|AF098297.1|AF098297 Homo sapiens CBF1 interacting corepr... 40 0.78
gb|AC005267.1|AC005267 Drosophila melanogaster DNA sequence... 40 0.78
gb|AC002330.1|AC002330 Arabidopsis thaliana BAC T10P11 from... 40 1.0
ref|NM_116506.1| Arabidopsis thaliana chromosome 4 CHR4v12... 40 1.0
emb|X88927.1|XLNOPP180 X.laevis mRNA for xNopp180 40 1.0
gb|AC004044.1|AC004044 Arabidopsis thaliana BAC T5J8 from c... 40 1.0
dbj|D64059.1|D64059 Rattus norvegicus mRNA for helicase II,... 40 1.0
emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome... 40 1.0
emb|Z49888.1|CEF47A4 Caenorhabditis elegans cosmid F47A4, c... 40 1.3
ref|NM_077244.1| Caenorhabditis elegans 40 1.3
emb|AL442115.1|H0711G06 Oryza sativa genomic DNA, chromosom... 40 1.3
gb|AE003444.1|AE003444 Drosophila melanogaster genomic scaf... 39 1.7
gb|AC010007.3| Drosophila melanogaster 3L BAC RP98-17K17 (R... 39 1.7
gb|AY061610.1| Drosophila melanogaster SD07532 full length ... 39 1.7
gb|AE003471.2|AE003471 Drosophila melanogaster genomic scaf... 39 1.7
gb|AY038694.1| Enterococcus faecalis SalB antigen gene, com... 39 1.7
gb|AC004546.1|AC004546 Drosophila melanogaster DNA sequence... 39 1.7
dbj|AP002057.1|AP002057 Arabidopsis thaliana genomic DNA, c... 39 1.7
gb|AY069525.1| Drosophila melanogaster LD24034 full length ... 39 1.7
gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence... 39 1.7
ref|NG_000592.1| Drosophila melanogaster dribble (dbe) on c... 39 1.7
ref|NG_000099.1| Drosophila melanogaster neither inactivati... 39 1.7
gb|AE003588.2|AE003588 Drosophila melanogaster genomic scaf... 39 1.7
ref|NM_113798.1| Arabidopsis thaliana chromosome 3 CHR3v12... 39 1.7
gb|AC092222.1|AC092222 Drosophila melanogaster, chromosome ... 39 1.7
gb|AF312858.1|AF312858 Mus musculus leukemia associated gen... 39 1.7
ref|NM_025937.1| Mus musculus RIKEN cDNA 2610020O08 gene (2... 39 1.7
gb|AF367177.1|AF367177 Drosophila melanogaster chromatin as... 39 1.7
gb|AC018797.4|AC018797 Homo sapiens BAC clone RP11-10L12 fr... 39 1.7
dbj|AK011492.1|AK011492 Mus musculus 10 days embryo whole b... 39 1.7
gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16,... 39 2.3
ref|NM_068344.1| Caenorhabditis elegans 39 2.3
gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, ... 39 2.3
emb|AL009173.1|HS32F7 Homo sapiens DNA sequence from PAC 32... 39 2.3
emb|Z28089.1|SCYKL089W S.cerevisiae chromosome XI reading f... 39 2.3
emb|Z18294.1|SCMIF2A Saccharomyces cerevisiae of MIF2 gene 39 2.3
gb|AF105219.1|AF105219 Thermomonospora curvata putative reg... 39 2.9
gb|AE003686.2|AE003686 Drosophila melanogaster genomic scaf... 39 2.9
dbj|AP000539.1|AP000539 Homo sapiens genomic DNA, chromosom... 39 2.9
dbj|AP000540.2|AP000540 Homo sapiens genomic DNA, chromosom... 39 2.9
gb|AF145646.1|AF145646 Drosophila melanogaster clone GH0792... 39 2.9
gb|AE003550.2|AE003550 Drosophila melanogaster genomic scaf... 39 2.9
gb|AC093435.1| Drosophila melanogaster 3L BAC RP98-7A5 (Ros... 39 2.9
gb|AC008139.8|AC008139 Drosophila melanogaster, chromosome ... 39 2.9
emb|AJ131342.1|ATH131342 Arabidopsis thaliana mRNA for LEA-... 38 3.8
ref|NM_112632.1| Arabidopsis thaliana chromosome 3 CHR3v12... 38 3.8
ref|NM_068161.1| Caenorhabditis elegans 38 3.8
gb|U85969.1|XLU85969 Xenopus laevis middle molecular weight... 38 3.8
gb|AF283810.1|AF283810 Streptococcus pyogenes M protein pre... 38 3.8
gb|AC079273.5| Mus musculus chromosome 12 clone RP23-373N04... 38 3.8
emb|AL451124.13|AL451124 Human DNA sequence from clone RP11... 38 3.8
emb|AL158044.17|AL158044 Human DNA sequence from clone RP11... 38 3.8
dbj|AB022219.1|AB022219 Arabidopsis thaliana genomic DNA, c... 38 3.8
gb|AC024089.1|AC024089 Caenorhabditis elegans cosmid C36E6,... 38 5.0
gb|AC006616.1|AC006616 Caenorhabditis elegans clone C36E6, ... 38 5.0
emb|AL355931.1|NCB3E4 Neurospora crassa DNA linkage group I... 38 5.0
emb|AL021046.3|SPAC3G9 S.pombe chromosome I cosmid c3G9 38 5.0
gb|AY069867.1| Drosophila melanogaster SD10857 full length ... 37 6.6
gb|AC006832.2| Caenorhabditis elegans cosmid ZK355, complet... 37 6.6
gb|AF064865.1|AF064865 Homo sapiens chromosome 21q22.3 PAC ... 37 6.6
gb|AC093787.3| Homo sapiens chromosome 2 clone RP11-215P9, ... 37 6.6
ref|NM_060130.1| Caenorhabditis elegans 37 6.6
dbj|AK015651.1|AK015651 Mus musculus adult male testis cDNA... 37 6.6
ref|NM_101434.1| Arabidopsis thaliana chromosome 1 CHR1v12... 37 6.6
gb|AC013453.1|AC013453 Arabidopsis thaliana chromosome I BA... 37 6.6
gb|AF064862.1|AF064862 Homo sapiens chromosome 21q22.3 PAC ... 37 8.6
ref|NM_058900.1| Caenorhabditis elegans 37 8.6
emb|AL358177.19|AL358177 Human DNA sequence from clone RP11... 37 8.6
gb|AF129858.1|AF129858 Zea mays CENPCB protein (CenpcB) mRN... 37 8.6
gb|AC006627.1| Caenorhabditis elegans cosmid E01A2, complet... 37 8.6
ref|NM_022328.1| Mus musculus myeloid/lymphoid or mixed lin... 37 8.6
gb|AF298887.1|AF298887 Mus musculus Btk-PH-domain binding p... 37 8.6
emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment ... 37 8.6
emb|AL592183.10|AL592183 Human DNA sequence from clone RP11... 37 8.6
>dbj|AB004650.1|AB004650 Chicken mRNA for CENP-C, clone CENP-C_1_2, complete cds
Length = 2760
Score = 1554 bits (4023), Expect = 0.0
Identities = 790/853 (92%), Positives = 790/853 (92%)
Frame = +1
Query: 1 MAERLDHLKKYYRARFCGQGGKKINIQPGQNVLKYIQDCFECDDTDVTINSPNATSSSTP 60
MAERLDHLKKYYRARFCGQGGKKINIQPGQNVLKYIQDCFECDDTDVTINSPNATSSSTP
Sbjct: 4 MAERLDHLKKYYRARFCGQGGKKINIQPGQNVLKYIQDCFECDDTDVTINSPNATSSSTP 183
Query: 61 LVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGRNSR 120
LVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGRNSR
Sbjct: 184 LVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGRNSR 363
Query: 121 IADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTR 180
IADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTR
Sbjct: 364 IADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTR 543
Query: 181 TVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKS 240
TVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKS
Sbjct: 544 TVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKS 723
Query: 241 QSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQ 300
QSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQ
Sbjct: 724 QSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQ 903
Query: 301 SSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVP 360
SSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVP
Sbjct: 904 SSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVP 1083
Query: 361 SAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDTVXXXXXXXXXXXXX 420
SAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDTV
Sbjct: 1084SAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDTVLKSQRKKLKKSGK 1263
Query: 421 XXXXXNPEPRRWKSSDXXXXXXXXXXXXXXXXXMFTSPPHQELQTSVLQKLAKSEKAEKV 480
NPEPRRWKSSD MFTSPPHQELQTSVLQKLAKSEKAEKV
Sbjct: 1264RNGNKNPEPRRWKSSDSEPGEEGLEREPLESNEMFTSPPHQELQTSVLQKLAKSEKAEKV 1443
Query: 481 LHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSI 540
LHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSI
Sbjct: 1444LHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSI 1623
Query: 541 TRDSEPQNTTDSDSSSAPEVASKKPKSNRHQRLQHSPAAEKAMGPESGLVLEHSEKYTSP 600
TRDSEPQNTTDSDSSSAPEVASKKPKSNRHQRLQHSPAAEKAMGPESGLVLEHSEKYTSP
Sbjct: 1624TRDSEPQNTTDSDSSSAPEVASKKPKSNRHQRLQHSPAAEKAMGPESGLVLEHSEKYTSP 1803
Query: 601 SKHCXXXXXXXXXXXXLHCQIKNLLSDEIGRQKIVLPSNTPNVRRTKRIRLKPLEYWRGE 660
SKHC LHCQIKNLLSDEIGRQKIVLPSNTPNVRRTKRIRLKPLEYWRGE
Sbjct: 1804SKHCEENNESSDNSEDLHCQIKNLLSDEIGRQKIVLPSNTPNVRRTKRIRLKPLEYWRGE 1983
Query: 661 RVTYTLKPSGRLLISGIAGAEAEPHMXXXXXXXXXXXXXXXXSEVVKCLDIPLADASKPT 720
RVTYTLKPSGRLLISGIAGAEAEPHM SEVVKCLDIPLADASKPT
Sbjct: 1984RVTYTLKPSGRLLISGIAGAEAEPHMKNKLKSRHKKKRAKTRSEVVKCLDIPLADASKPT 2163
Query: 721 SIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFV 780
SIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFV
Sbjct: 2164SIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFV 2343
Query: 781 HMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQLKNDR 840
HMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQLKNDR
Sbjct: 2344HMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQLKNDR 2523
Query: 841 PLAGSVLSGSSSP 853
PLAGSVLSGSSSP
Sbjct: 2524PLAGSVLSGSSSP 2562
>dbj|AB004649.1|AB004649 Gallus gallus mRNA for CENP-C, complete cds
Length = 2952
Score = 1523 bits (3944), Expect(2) = 0.0
Identities = 779/858 (90%), Positives = 780/858 (90%), Gaps = 11/858 (1%)
Frame = +1
Query: 1 MAERLDHLKKYYRARFCGQGGKKINIQPGQNVLKYIQDCFECDDTDVTINSPNATSSSTP 60
MAERLDHLKKYYRARFCGQGGKKINIQPGQNVLKYIQDCFECDDTDVTINSPNATSSSTP
Sbjct: 31 MAERLDHLKKYYRARFCGQGGKKINIQPGQNVLKYIQDCFECDDTDVTINSPNATSSSTP 210
Query: 61 LVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGRNSR 120
LVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGRNSR
Sbjct: 211 LVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGRNSR 390
Query: 121 IADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTR 180
IADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTR
Sbjct: 391 IADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTR 570
Query: 181 TVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKS 240
TVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKS
Sbjct: 571 TVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKS 750
Query: 241 QSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQ 300
QSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQ
Sbjct: 751 QSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQ 930
Query: 301 SSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVP 360
SSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVP
Sbjct: 931 SSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVP 1110
Query: 361 SAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDTVXXXXXXXXXXXXX 420
SAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDTV
Sbjct: 1111SAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDTVLKSQRKKLKKSGK 1290
Query: 421 XXXXXNPEPRRWKSSDXXXXXXXXXXXXXXXXXMFTSPPHQELQTSVLQKLAKSEKAEKV 480
NPEPRRWKSSD MFTSPPHQELQTSVLQKLAKSEKAEKV
Sbjct: 1291RNGNKNPEPRRWKSSDSEPGEEGLEREPLESNEMFTSPPHQELQTSVLQKLAKSEKAEKV 1470
Query: 481 LHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSI 540
LHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSI
Sbjct: 1471LHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSI 1650
Query: 541 TRDSEPQNTTDSDSSSAPEV-----------ASKKPKSNRHQRLQHSPAAEKAMGPESGL 589
TRDSEPQNTTDSDSSSAPEV ASKKPKSNRHQRLQHSPAAEKAMGPESGL
Sbjct: 1651TRDSEPQNTTDSDSSSAPEVARKKRRQSAVRASKKPKSNRHQRLQHSPAAEKAMGPESGL 1830
Query: 590 VLEHSEKYTSPSKHCXXXXXXXXXXXXLHCQIKNLLSDEIGRQKIVLPSNTPNVRRTKRI 649
VLEHSEKYTSPSKHC LHCQIKNLLSDEIGRQKIVLPSNTPNVRRTKRI
Sbjct: 1831VLEHSEKYTSPSKHCEENNESSDNSEDLHCQIKNLLSDEIGRQKIVLPSNTPNVRRTKRI 2010
Query: 650 RLKPLEYWRGERVTYTLKPSGRLLISGIAGAEAEPHMXXXXXXXXXXXXXXXXSEVVKCL 709
RLKPLEYWRGERVTYTLKPSGRLLISGIAGAEAEPHM SEVVKCL
Sbjct: 2011RLKPLEYWRGERVTYTLKPSGRLLISGIAGAEAEPHMKNKLKSRHKKKRAKTRSEVVKCL 2190
Query: 710 DIPLADASKPTSIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLIL 769
DIPLADASKPTSIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLIL
Sbjct: 2191DIPLADASKPTSIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLIL 2370
Query: 770 KPLKEKGHQFVHMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEES 829
KPLKEKGHQFVHMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEES
Sbjct: 2371KPLKEKGHQFVHMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEES 2550
Query: 830 VLHFTQLKNDRPLAGSVL 847
VLHFTQLKNDR G+ L
Sbjct: 2551VLHFTQLKNDRAPVGAEL 2604
Score = 28.5 bits (62), Expect(2) = 0.0
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 841 PLAGSVLSGSSSP 853
PLAGSVLSGSSSP
Sbjct: 2702 PLAGSVLSGSSSP 2740
>dbj|AB042324.1|AB042324 Gallus gallus CENP-C gene for centromere protein CENP-C, complete cds
Length = 27630
Score = 439 bits (1129), Expect = e-121
Identities = 234/280 (83%), Positives = 234/280 (83%), Gaps = 11/280 (3%)
Frame = +2
Query: 306 GKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQ 365
GKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQ
Sbjct: 9035 GKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQ 9214
Query: 366 QEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDTVXXXXXXXXXXXXXXXXXX 425
QEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDTV
Sbjct: 9215 QEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDTVLKSQRKKLKKSGKRNGNK 9394
Query: 426 NPEPRRWKSSDXXXXXXXXXXXXXXXXXMFTSPPHQELQTSVLQKLAKSEKAEKVLHALE 485
NPEPRRWKSSD MFTSPPHQELQTSVLQKLAKSEKAEKVLHALE
Sbjct: 9395 NPEPRRWKSSDSEPGEEGLEREPLESNEMFTSPPHQELQTSVLQKLAKSEKAEKVLHALE 9574
Query: 486 SVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSE 545
SVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSE
Sbjct: 9575 SVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSE 9754
Query: 546 PQNTTDSDSSSAPEV-----------ASKKPKSNRHQRLQ 574
PQNTTDSDSSSAPEV ASKKPKSNRHQRLQ
Sbjct: 9755 PQNTTDSDSSSAPEVARKKRRQSAVRASKKPKSNRHQRLQ 9874
Score = 257 bits (656), Expect = 4e-66
Identities = 130/133 (97%), Positives = 130/133 (97%)
Frame = +1
Query: 176 PVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAA 235
PV RTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAA
Sbjct: 7600 PVFRRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAA 7779
Query: 236 PVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVL 295
PVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVL
Sbjct: 7780 PVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVL 7959
Query: 296 KSKMQSSTHAGKS 308
KSKMQSSTHAG S
Sbjct: 7960 KSKMQSSTHAGMS 7998
Score = 156 bits (394), Expect(2) = 4e-50
Identities = 74/74 (100%), Positives = 74/74 (100%)
Frame = +3
Query: 106 GEPCVFCPEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVG 165
GEPCVFCPEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVG
Sbjct: 5775 GEPCVFCPEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVG 5954
Query: 166 SPLLVEEAKTPVQT 179
SPLLVEEAKTPVQT
Sbjct: 5955 SPLLVEEAKTPVQT 5996
Score = 110 bits (274), Expect = 8e-22
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = +3
Query: 734 ECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTI 785
ECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTI
Sbjct: 18780 ECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTI 18935
Score = 81.3 bits (199), Expect = 4e-13
Identities = 37/38 (97%), Positives = 38/38 (99%)
Frame = +1
Query: 633 KIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSG 670
K+VLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSG
Sbjct: 14869 KLVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSG 14982
Score = 69.7 bits (169), Expect = 1e-09
Identities = 34/44 (77%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Frame = +1
Query: 786 AFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIR-NLLNEE 828
AFYVIRGQIITTLHKTSYYLTSGDYFYVPAG +++ NLL +
Sbjct: 19846 AFYVIRGQIITTLHKTSYYLTSGDYFYVPAGKCMSLKTNLLGAD 19977
Score = 69.3 bits (168), Expect(2) = 4e-50
Identities = 33/36 (91%), Positives = 34/36 (93%)
Frame = +2
Query: 74 RPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPC 109
+PDAGLTIVVGNRTCHSTVSLPATPAETVRSKG C
Sbjct: 5585 QPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGW*C 5692
Score = 67.0 bits (162), Expect = 8e-09
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 40 FECDDTDVTINSPNATSSSTPLVRNQERTSTQSPR 74
F DDTDVTINSPNATSSSTPLVRNQERTSTQSPR
Sbjct: 4125 FVGDDTDVTINSPNATSSSTPLVRNQERTSTQSPR 4229
Score = 63.5 bits (153), Expect = 9e-08
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +1
Query: 703 SEVVKCLDIPLADASKPTSIVDPVTNQEVLL 733
SEVVKCLDIPLADASKPTSIVDPVTNQEVLL
Sbjct: 18358 SEVVKCLDIPLADASKPTSIVDPVTNQEVLL 18450
Score = 56.2 bits (134), Expect = 1e-05
Identities = 25/31 (80%), Positives = 28/31 (89%)
Frame = +1
Query: 810 YFYVPAGNGYNIRNLLNEESVLHFTQLKNDR 840
+ ++ GNGYNIRNLLNEESVLHFTQLKNDR
Sbjct: 20272 FLFLFIGNGYNIRNLLNEESVLHFTQLKNDR 20364
Score = 49.7 bits (117), Expect = 0.001
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 22 KKINIQPGQNVLKYIQDCFEC 42
KKINIQPGQNVLKYIQDCFEC
Sbjct: 3745 KKINIQPGQNVLKYIQDCFEC 3807
Score = 42.4 bits (98), Expect = 0.20
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +1
Query: 587 SGLVLEHSEKYTSPSKHC 604
SGLVLEHSEKYTSPSKHC
Sbjct: 12115 SGLVLEHSEKYTSPSKHC 12168
Score = 40.8 bits (94), Expect = 0.59
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 6 DHLKKYYRARFCGQGG 21
DHLKKYYRARFCGQGG
Sbjct: 2634 DHLKKYYRARFCGQGG 2681
Score = 40.4 bits (93), Expect = 0.78
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +1
Query: 617 LHCQIKNLLSDEIGRQKI 634
LHCQIKNLLSDEIGRQKI
Sbjct: 13462 LHCQIKNLLSDEIGRQKI 13515
Score = 38.9 bits (89), Expect = 2.3
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +2
Query: 669 SGRLLISGIAGAEAEPHM 686
SGRLLISGIAGAEAEPHM
Sbjct: 15740 SGRLLISGIAGAEAEPHM 15793
>ref|NM_007683.1| Mus musculus centromere autoantigen C (Cenpc), mRNA
Length = 3092
Score = 196 bits (497), Expect = 1e-47
Identities = 228/943 (24%), Positives = 391/943 (41%), Gaps = 110/943 (11%)
Frame = +2
Query: 5 LDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDDTDVTIN--SPNATSSSTPL 61
LDHLK Y+R R+C I+ + GQN+L+ +QDCFE ++ + + TSS+
Sbjct: 140 LDHLKNYHR-RYCRSSRAPNIHTKKGQNMLEILQDCFEDQSKASFLDDFTESLTSSTQKK 316
Query: 62 VRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSK---------------- 105
N ++S++ + V +RT +++ A P+E
Sbjct: 317 KANYSQSSSKKCPESHSKPVPVSSRTGEASLQASAEPSEAAGGSVQANEVHHGASDELDL 496
Query: 106 --GEPCVF----------CPEPGRNSRIADSIKTDSPVHRGET---------QVLTFKD- 143
G P V P R+A + SPV R + + L F+D
Sbjct: 497 CVGSPVVLLDANVNTLQKAASPAGQKRVASVSR--SPVDRQASNKNISFKTRKRLNFEDK 670
Query: 144 -VEGLCESPAKLSDPEDD--PGVVGSPLLV----EEAKTPVQTRT--------------- 181
E+ + ED+ G G+ + ++ + VQ+R+
Sbjct: 671 VTSSTAETENSVLQVEDNLSKGQEGTSSEITQKRDDLSSDVQSRSKKNFSELFLETVKRK 850
Query: 182 ---------VSIAPSSPSPVKDHNVEIESDCEFLIDESG-CLSFKSWFSIPRKNRKSQKD 231
+ P SP P D + + EF+ID S S + W IP K+R
Sbjct: 851 SKSSSVVRHTAAVPFSPPPPSDMKL---LEDEFIIDRSDRSFSSRLWVMIPSKDRHL--- 1012
Query: 232 GSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSS--- 288
+ P ++ + + K + +K +++ + Q K ++ + + + E +P ++
Sbjct: 1013 SAHKPSPENTALLQGKKSREKSHSLSAMTFARNTQSDKAHPIE-EAQLSVEENPATTCTD 1189
Query: 289 --DSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSD--- 343
+++ + ++KMQS T K+ + + + ++++S AE+L E S+
Sbjct: 1190 ELENDCRSPENKMQSET--AKTPPAWERTTKQSQRRVSKPKAAEELRKGQSSWENSNVSN 1363
Query: 344 -GEQKI-----RRVMPREDLAVPSAEHQQEQMLSSKK--NLTPCKYQQSASKAYQRSVHK 395
G+ + R + E++ +Q+ L +K+ N T ++S K +
Sbjct: 1364 TGQDTLQINSKRNMKDCEEVRNEPNPKKQKPALENKRKTNSTQTNKEKSGKKFFSGGSKN 1543
Query: 396 KQTKQTLANDTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXXXXXXXXXXXXXXXMF 455
K + + + R S +
Sbjct: 1544 KFVPKKVTLTSRRSRRISQRPSEWWRVKSDESSVDRNPSKENNSPVVYPNKKKQTKRNHV 1723
Query: 456 TSPPHQELQTSVLQKLAKSEKAEKVLHALES--------VTDVNNKTPLKAVEL----LQ 503
+ ++ +S QK S + +K L+ +S T + + PLK +E
Sbjct: 1724 SKRAGKKPGSSKRQKTEMSPRVQKSLNVKDSGGTVSGHDDTSRSQRKPLKIIEADPTQKS 1903
Query: 504 HLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASK 563
+ K K R++V +S VH ++H + S+ Q + S+S + +
Sbjct: 1904 LAISRPKRGCKYRNNVMTS----PNVHLKSHTEEYT----SKTQMESASNSEMSKRSVWE 2059
Query: 564 KPKSNRHQRLQHSPAAEKAMGPESGLVLEHSEKYTSPSKHCXXXXXXXXXXXXLHCQIKN 623
+ +R + + ++ MG E + S +T+ S N
Sbjct: 2060 ESGPSRFKNYEMPGSSNSEMGDEQD---QKSLHFTTRS--------------------FN 2170
Query: 624 LLSDEIGRQKIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGRLLISGIAGA--- 680
++ D+ K+VLPSN+PNVRR+ RIRLKPLEYWRGERV Y SG+L++ I+ +
Sbjct: 2171 MVPDKKLHHKLVLPSNSPNVRRSNRIRLKPLEYWRGERVDYQESSSGQLVLEIISPSSVP 2350
Query: 681 ---EAEPHMXXXXXXXXXXXXXXXXSEVVKC---LDIPLADASKPTSIVDPVTNQEVLLE 734
+A+ ++ E K LD+ L D + T DP T + V ++
Sbjct: 2351 TKIKAQRNLGKVNKKVTKKPTHLNSHEKAKMELPLDMRLGDPFQATLAKDPETAELVPMD 2530
Query: 735 CINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTIAFYVIRGQI 794
I ++ F E +KV+K+L+T F+ GKL+L P +EKG Q V D + FYV G +
Sbjct: 2531 LIRPRDTYRFFVEQHGLKVFKTLDTIYFSTGKLVLGPYEEKGKQHVGQDILVFYVNFGDL 2710
Query: 795 ITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQLK 837
+ TLH+T Y LT+GD FYVP+GN YNI+NLLN ES L FTQ+K
Sbjct: 2711 LCTLHETPYKLTTGDSFYVPSGNHYNIKNLLNVESSLLFTQIK 2839
>gb|U03113.1|MMCENPC Mus musculus Swiss centromeric protein CENPC (CENP-C) mRNA, complete
cds
Length = 3092
Score = 196 bits (497), Expect = 1e-47
Identities = 228/943 (24%), Positives = 391/943 (41%), Gaps = 110/943 (11%)
Frame = +2
Query: 5 LDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDDTDVTIN--SPNATSSSTPL 61
LDHLK Y+R R+C I+ + GQN+L+ +QDCFE ++ + + TSS+
Sbjct: 140 LDHLKNYHR-RYCRSSRAPNIHTKKGQNMLEILQDCFEDQSKASFLDDFTESLTSSTQKK 316
Query: 62 VRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSK---------------- 105
N ++S++ + V +RT +++ A P+E
Sbjct: 317 KANYSQSSSKKCPESHSKPVPVSSRTGEASLQASAEPSEAAGGSVQANEVHHGASDELDL 496
Query: 106 --GEPCVF----------CPEPGRNSRIADSIKTDSPVHRGET---------QVLTFKD- 143
G P V P R+A + SPV R + + L F+D
Sbjct: 497 CVGSPVVLLDANVNTLQKAASPAGQKRVASVSR--SPVDRQASNKNISFKTRKRLNFEDK 670
Query: 144 -VEGLCESPAKLSDPEDD--PGVVGSPLLV----EEAKTPVQTRT--------------- 181
E+ + ED+ G G+ + ++ + VQ+R+
Sbjct: 671 VTSSTAETENSVLQVEDNLSKGQEGTSSEITQKRDDLSSDVQSRSKKNFSELFLETVKRK 850
Query: 182 ---------VSIAPSSPSPVKDHNVEIESDCEFLIDESG-CLSFKSWFSIPRKNRKSQKD 231
+ P SP P D + + EF+ID S S + W IP K+R
Sbjct: 851 SKSSSVVRHTAAVPFSPPPPSDMKL---LEDEFIIDRSDRSFSSRLWVMIPSKDRHL--- 1012
Query: 232 GSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSS--- 288
+ P ++ + + K + +K +++ + Q K ++ + + + E +P ++
Sbjct: 1013 SAHKPSPENTALLQGKKSREKSHSLSAMTFARNTQSDKAHPIE-EAQLSVEENPATTCTD 1189
Query: 289 --DSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSD--- 343
+++ + ++KMQS T K+ + + + ++++S AE+L E S+
Sbjct: 1190 ELENDCRSPENKMQSET--AKTPPAWERTTKQSQRRVSKPKAAEELRKGQSSWENSNVSN 1363
Query: 344 -GEQKI-----RRVMPREDLAVPSAEHQQEQMLSSKK--NLTPCKYQQSASKAYQRSVHK 395
G+ + R + E++ +Q+ L +K+ N T ++S K +
Sbjct: 1364 TGQDTLQINSKRNMKDCEEVRNEPNPKKQKPALENKRKTNSTQTNKEKSGKKFFSGGSKN 1543
Query: 396 KQTKQTLANDTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXXXXXXXXXXXXXXXMF 455
K + + + R S +
Sbjct: 1544 KFVPKKVTLTSRRSRRISQRPSEWWRVKSDESSVDRNPSKENNSPVVYPNKKKQTKRNHV 1723
Query: 456 TSPPHQELQTSVLQKLAKSEKAEKVLHALES--------VTDVNNKTPLKAVEL----LQ 503
+ ++ +S QK S + +K L+ +S T + + PLK +E
Sbjct: 1724 SKRAGKKPGSSKRQKTEMSPRVQKSLNVKDSGGTVSGHDDTSRSQRKPLKIIEADPTQKS 1903
Query: 504 HLVDSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASK 563
+ K K R++V +S VH ++H + S+ Q + S+S + +
Sbjct: 1904 LAISRPKRGCKYRNNVMTS----PNVHLKSHTEEYT----SKTQMESASNSEMSKRSVWE 2059
Query: 564 KPKSNRHQRLQHSPAAEKAMGPESGLVLEHSEKYTSPSKHCXXXXXXXXXXXXLHCQIKN 623
+ +R + + ++ MG E + S +T+ S N
Sbjct: 2060 ESGPSRFKNYEMPGSSNSEMGDEQD---QKSLHFTTRS--------------------FN 2170
Query: 624 LLSDEIGRQKIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGRLLISGIAGA--- 680
++ D+ K+VLPSN+PNVRR+ RIRLKPLEYWRGERV Y SG+L++ I+ +
Sbjct: 2171 MVPDKKLHHKLVLPSNSPNVRRSNRIRLKPLEYWRGERVDYQESSSGQLVLEIISPSSVP 2350
Query: 681 ---EAEPHMXXXXXXXXXXXXXXXXSEVVKC---LDIPLADASKPTSIVDPVTNQEVLLE 734
+A+ ++ E K LD+ L D + T DP T + V ++
Sbjct: 2351 TKIKAQRNLGKVNKKVTKKPTHLNSHEKAKMELPLDMRLGDPFQATLAKDPETAELVPMD 2530
Query: 735 CINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTIAFYVIRGQI 794
I ++ F E +KV+K+L+T F+ GKL+L P +EKG Q V D + FYV G +
Sbjct: 2531 LIRPRDTYRFFVEQHGLKVFKTLDTIYFSTGKLVLGPYEEKGKQHVGQDILVFYVNFGDL 2710
Query: 795 ITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQLK 837
+ TLH+T Y LT+GD FYVP+GN YNI+NLLN ES L FTQ+K
Sbjct: 2711 LCTLHETPYKLTTGDSFYVPSGNHYNIKNLLNVESSLLFTQIK 2839
>ref|XM_084163.1| Homo sapiens centromere protein C 1 (CENPC1), mRNA
Length = 3115
Score = 187 bits (476), Expect = 3e-45
Identities = 100/218 (45%), Positives = 131/218 (59%), Gaps = 13/218 (5%)
Frame = +1
Query: 633 KIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGRLLISGIAGAEAEPHMXXXXXX 692
K+VLPSNTPNVRRTKR RLKPLEYWRGER+ Y +PSG +ISG+ +
Sbjct: 2335 KLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSKRKAKEN 2514
Query: 693 XXXXXXXXXXSEVVKCLD-------------IPLADASKPTSIVDPVTNQEVLLECINSG 739
+ CLD IPL D +PT + DP T + +L++ +
Sbjct: 2515 IGKVNKKSNKKRI--CLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDLVRPQ 2688
Query: 740 SSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTIAFYVIRGQIITTLH 799
++ F + +KVYK+L+T F+ GKLIL P +EKG Q V D + FYV G ++ TLH
Sbjct: 2689 DTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLLCTLH 2868
Query: 800 KTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQLK 837
+T Y L++GD FYVP+GN YNI+NL NEESVL FTQ+K
Sbjct: 2869 ETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIK 2982
Score = 57.0 bits (136), Expect = 8e-06
Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 15/300 (5%)
Frame = +1
Query: 2 AERLDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDD--TDVTINSPNATSSS 58
A LDHLK YR RFC + IN + GQNVL+ +QDCFE D + NS + +S
Sbjct: 163 ASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVPNS 342
Query: 59 TPLVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGR- 117
T +++ T QSP ++ C S P + + + K F EP
Sbjct: 343 TRKIKD---TCIQSP-----------SKECQK--SHPKSVPVSSKKKEASLQFVVEPSEA 474
Query: 118 NSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGV---VGSPLLVEEAK 174
+R + + + + D + + E D VGSP ++ +AK
Sbjct: 475 TNRSVQAHEVHQKILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAK 654
Query: 175 TPVQTRTVSIAPSSPSPVKDHNVE-----IESDCEFLIDESGCLSFKSWFSIPRKNRKSQ 229
T V + ++ PSS + + E + S E + L+F + +K +
Sbjct: 655 TSV---SQNVIPSSAQKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVML----KKIE 813
Query: 230 KDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTK---NVRVQRDLKRTSESHPV 286
D + S +E+ +N +E +++ K + +KR SES P+
Sbjct: 814 IDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPI 993
>gb|U35657.1|OAU35657 Ovis aries centromere protein C (CENP-C) mRNA, partial cds
Length = 1376
Score = 187 bits (476), Expect = 3e-45
Identities = 98/217 (45%), Positives = 132/217 (60%), Gaps = 11/217 (5%)
Frame = +1
Query: 633 KIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGRLLISGIAGAEAEPHMXXXXXX 692
K+VLPS TPNVRRT R R KPLEYWRGER+ Y +PSG +I GI +
Sbjct: 556 KLVLPSYTPNVRRTMRTRSKPLEYWRGERIDYQARPSGGFVIGGILSPDTVSSKRKAKGN 735
Query: 693 XXXXXXXXXXSEV-----------VKCLDIPLADASKPTSIVDPVTNQEVLLECINSGSS 741
+ + L+IPL D +PT + DP T + VL++ I +
Sbjct: 736 LGRIITTANRKRICLENAPIKNKFMVNLNIPLGDPLQPTRVKDPETQETVLMDLIRPRDT 915
Query: 742 HSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTIAFYVIRGQIITTLHKT 801
+ E + +KVYK+L+T F++GKLI+ PL+EKG Q V +DT+ FYV G ++ TLH+T
Sbjct: 916 YQFCVEHDELKVYKTLDTPFFSSGKLIIGPLQEKGKQHVGLDTLVFYVNLGYLLCTLHET 1095
Query: 802 SYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQLKN 838
Y +T+GD FYVP+GN YNI+NLLNEE VL FTQ+K+
Sbjct: 1096PYIVTTGDSFYVPSGNYYNIKNLLNEERVLLFTQIKS 1206
>ref|NM_001812.1| Homo sapiens centromere protein C 1 (CENPC1), mRNA
Length = 3132
Score = 187 bits (476), Expect = 3e-45
Identities = 100/218 (45%), Positives = 131/218 (59%), Gaps = 13/218 (5%)
Frame = +1
Query: 633 KIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGRLLISGIAGAEAEPHMXXXXXX 692
K+VLPSNTPNVRRTKR RLKPLEYWRGER+ Y +PSG +ISG+ +
Sbjct: 2335 KLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSKRKAKEN 2514
Query: 693 XXXXXXXXXXSEVVKCLD-------------IPLADASKPTSIVDPVTNQEVLLECINSG 739
+ CLD IPL D +PT + DP T + +L++ +
Sbjct: 2515 IGKVNKKSNKKRI--CLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDLVRPQ 2688
Query: 740 SSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTIAFYVIRGQIITTLH 799
++ F + +KVYK+L+T F+ GKLIL P +EKG Q V D + FYV G ++ TLH
Sbjct: 2689 DTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLLCTLH 2868
Query: 800 KTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQLK 837
+T Y L++GD FYVP+GN YNI+NL NEESVL FTQ+K
Sbjct: 2869 ETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIK 2982
Score = 57.0 bits (136), Expect = 8e-06
Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 15/300 (5%)
Frame = +1
Query: 2 AERLDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDD--TDVTINSPNATSSS 58
A LDHLK YR RFC + IN + GQNVL+ +QDCFE D + NS + +S
Sbjct: 163 ASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVPNS 342
Query: 59 TPLVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGR- 117
T +++ T QSP ++ C S P + + + K F EP
Sbjct: 343 TRKIKD---TCIQSP-----------SKECQK--SHPKSVPVSSKKKEASLQFVVEPSEA 474
Query: 118 NSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGV---VGSPLLVEEAK 174
+R + + + + D + + E D VGSP ++ +AK
Sbjct: 475 TNRSVQAHEVHQKILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAK 654
Query: 175 TPVQTRTVSIAPSSPSPVKDHNVE-----IESDCEFLIDESGCLSFKSWFSIPRKNRKSQ 229
T V + ++ PSS + + E + S E + L+F + +K +
Sbjct: 655 TSV---SQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVML----KKIE 813
Query: 230 KDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTK---NVRVQRDLKRTSESHPV 286
D + S +E+ +N +E +++ K + +KR SES P+
Sbjct: 814 IDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPI 993
>gb|M95724.1|HUMCENPRO H.sapiens centromere autoantigen C (CENPC) mRNA, complete cds
Length = 3132
Score = 187 bits (476), Expect = 3e-45
Identities = 100/218 (45%), Positives = 131/218 (59%), Gaps = 13/218 (5%)
Frame = +1
Query: 633 KIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGRLLISGIAGAEAEPHMXXXXXX 692
K+VLPSNTPNVRRTKR RLKPLEYWRGER+ Y +PSG +ISG+ +
Sbjct: 2335 KLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSKRKAKEN 2514
Query: 693 XXXXXXXXXXSEVVKCLD-------------IPLADASKPTSIVDPVTNQEVLLECINSG 739
+ CLD IPL D +PT + DP T + +L++ +
Sbjct: 2515 IGKVNKKSNKKRI--CLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDLVRPQ 2688
Query: 740 SSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTIAFYVIRGQIITTLH 799
++ F + +KVYK+L+T F+ GKLIL P +EKG Q V D + FYV G ++ TLH
Sbjct: 2689 DTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLLCTLH 2868
Query: 800 KTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQLK 837
+T Y L++GD FYVP+GN YNI+NL NEESVL FTQ+K
Sbjct: 2869 ETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIK 2982
Score = 57.0 bits (136), Expect = 8e-06
Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 15/300 (5%)
Frame = +1
Query: 2 AERLDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDD--TDVTINSPNATSSS 58
A LDHLK YR RFC + IN + GQNVL+ +QDCFE D + NS + +S
Sbjct: 163 ASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVPNS 342
Query: 59 TPLVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGR- 117
T +++ T QSP ++ C S P + + + K F EP
Sbjct: 343 TRKIKD---TCIQSP-----------SKECQK--SHPKSVPVSSKKKEASLQFVVEPSEA 474
Query: 118 NSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGV---VGSPLLVEEAK 174
+R + + + + D + + E D VGSP ++ +AK
Sbjct: 475 TNRSVQAHEVHQKILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAK 654
Query: 175 TPVQTRTVSIAPSSPSPVKDHNVE-----IESDCEFLIDESGCLSFKSWFSIPRKNRKSQ 229
T V + ++ PSS + + E + S E + L+F + +K +
Sbjct: 655 TSV---SQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVML----KKIE 813
Query: 230 KDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTK---NVRVQRDLKRTSESHPV 286
D + S +E+ +N +E +++ K + +KR SES P+
Sbjct: 814 IDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPI 993
>ref|XM_017019.2| Homo sapiens similar to centromere protein C 1 (H. sapiens)
(LOC144645), mRNA
Length = 3131
Score = 125 bits (314), Expect = 2e-26
Identities = 61/129 (47%), Positives = 86/129 (66%)
Frame = +2
Query: 709 LDIPLADASKPTSIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLI 768
L IPL D +P + DP T + +L++ + ++ F + +KVY +L+T F+ GKLI
Sbjct: 2615 LGIPLGDPLQPAMVKDPETREIILMDLVRPQDTYQFFVKHGELKVYNTLDTPFFSTGKLI 2794
Query: 769 LKPLKEKGHQFVHMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEE 828
L+P +EKG Q V D + FYV G + TLH+ Y +++GD FYVP+GN YNI+NLLNEE
Sbjct: 2795 LRPQEEKGKQHVGQDILFFYVNFGDLSCTLHEIPYIISTGDSFYVPSGNYYNIKNLLNEE 2974
Query: 829 SVLHFTQLK 837
SVL FTQ+K
Sbjct: 2975 SVLLFTQIK 3001
Score = 73.9 bits (180), Expect = 6e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +1
Query: 633 KIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGRLLISGI 677
K+VLPSNTPNVRRTKR RLKPLEYWRG+++ Y +PSG +ISGI
Sbjct: 2353 KLVLPSNTPNVRRTKRTRLKPLEYWRGQQIDYQGRPSGGFVISGI 2487
Score = 51.2 bits (121), Expect = 4e-04
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 LDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDDTDVTINSPNATSSSTPLVR 63
LDHLK YR RFC + IN + GQNVL+ +QDCFE + + S N+T S R
Sbjct: 173 LDHLKNGYRRRFCQPSRARDINTEQGQNVLEILQDCFE-EKSLANDFSTNSTKSVLNSTR 349
Query: 64 NQERTSTQSP 73
+ T QSP
Sbjct: 350 KIKDTCIQSP 379
>gb|AC010201.18| Homo sapiens 12 BAC RP11-1109F11 (Roswell Park Cancer Institute Human
BAC Library) complete sequence
Length = 168851
Score = 125 bits (314), Expect = 2e-26
Identities = 61/129 (47%), Positives = 86/129 (66%)
Frame = -2
Query: 709 LDIPLADASKPTSIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLI 768
L IPL D +P + DP T + +L++ + ++ F + +KVY +L+T F+ GKLI
Sbjct: 17035 LGIPLGDPLQPAMVKDPETREIILMDLVRPQDTYQFFVKHGELKVYNTLDTPFFSTGKLI 16856
Query: 769 LKPLKEKGHQFVHMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEE 828
L+P +EKG Q V D + FYV G + TLH+ Y +++GD FYVP+GN YNI+NLLNEE
Sbjct: 16855 LRPQEEKGKQHVGQDILFFYVNFGDLSCTLHEIPYIISTGDSFYVPSGNYYNIKNLLNEE 16676
Query: 829 SVLHFTQLK 837
SVL FTQ+K
Sbjct: 16675 SVLLFTQIK 16649
Score = 73.9 bits (180), Expect = 6e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = -1
Query: 633 KIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGRLLISGI 677
K+VLPSNTPNVRRTKR RLKPLEYWRG+++ Y +PSG +ISGI
Sbjct: 17297 KLVLPSNTPNVRRTKRTRLKPLEYWRGQQIDYQGRPSGGFVISGI 17163
Score = 51.2 bits (121), Expect = 4e-04
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = -2
Query: 5 LDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDDTDVTINSPNATSSSTPLVR 63
LDHLK YR RFC + IN + GQNVL+ +QDCFE + + S N+T S R
Sbjct: 19477 LDHLKNGYRRRFCQPSRARDINTEQGQNVLEILQDCFE-EKSLANDFSTNSTKSVLNSTR 19301
Query: 64 NQERTSTQSP 73
+ T QSP
Sbjct: 19300 KIKDTCIQSP 19271
>gb|AC104806.3| Homo sapiens chromosome 4 clone RP11-584P21, complete sequence
Length = 147777
Score = 70.1 bits (170), Expect = 9e-10
Identities = 35/57 (61%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Frame = -3
Query: 618 HCQI---KNLLSDEIGRQKIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGR 671
HC + KN + + IVLPSNTPNVRRTKR RLKPLEYWRGER+ Y +PSG+
Sbjct: 102094 HC*VPSTKNYVYTFV*HLFIVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGK 101924
Score = 45.8 bits (107), Expect = 0.018
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = -3
Query: 731 VLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTI--AFY 788
+LL+ + ++ F + +KVYK+L+T F+ GKLIL P +EKG Q V D + F+
Sbjct: 98176 LLLDLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVSTFF 97997
Query: 789 VIRGQIITTLHKTSYY 804
+ + TL +T Y
Sbjct: 97996 I---YLCFTLGRTLIY 97958
Score = 42.0 bits (97), Expect = 0.27
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = -3
Query: 778 QFVHMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAG 816
+F+ + FYV G ++ TLH+T Y L++GD FYVP+G
Sbjct: 83047 RFLFLFLQVFYVNFGDLLCTLHETPYILSTGDSFYVPSG 82931
Score = 38.9 bits (89), Expect = 2.3
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = -1
Query: 793 QIITT-LHKTSYYLTSGDYFYVPA--GNGYNIRNLLNEESVLHFTQLK 837
Q++TT L K + + YF + GN YNI+NL NEESVL FTQ+K
Sbjct: 80799 QVMTTYLIKKNDSYVNNFYFLITLLLGNYYNIKNLRNEESVLLFTQIK 80656
>dbj|AK011004.1|AK011004 Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched
library, clone:2510027E19:centromere autoantigen C, full
insert sequence
Length = 1546
Score = 53.9 bits (128), Expect = 7e-05
Identities = 95/454 (20%), Positives = 177/454 (38%), Gaps = 78/454 (17%)
Frame = +1
Query: 5 LDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDDTDVTIN--SPNATSSSTPL 61
LDHLK Y+R R+C I+ + GQN+L+ +QDCFE ++ + + TSS+
Sbjct: 223 LDHLKNYHR-RYCRSSRAPNIHTKKGQNMLEILQDCFEDQSKASFLDDFTESLTSSTQKK 399
Query: 62 VRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSK---------------- 105
N ++S++ + V +RT +++ A P+E
Sbjct: 400 KANYSQSSSKKCPESHSKPVPVSSRTGEASLQASAEPSEAAGGSVQANEVHHGASDELDL 579
Query: 106 --GEPCVF----------CPEPGRNSRIADSIKTDSPVHR-GETQVLTFKDVEGL-CESP 151
G P V PG R+A + SPV R + ++FK + L E
Sbjct: 580 CVGSPVVLLDANVNTLQKAASPGGQKRVASVSR--SPVDRQASNKNISFKTRKRLYFEDK 753
Query: 152 AKLSDPEDDPGVVG-----------------------------------SPLLVE----E 172
LS E + V+ S L +E +
Sbjct: 754 VTLSTAETENSVLQVEDNLSKGQEGTSSEITQKRDDLSSDVQSRSKKNFSELFLETVKRK 933
Query: 173 AKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESG-CLSFKSWFSIPRKNRKSQKD 231
+K+ R + P SP P D + + EF+ID S S + W IP K+R
Sbjct: 934 SKSSSVVRHTAAVPFSPPPPSDMKL---LEDEFIIDRSDRSFSSRLWVMIPSKDRHL--- 1095
Query: 232 GSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSS--- 288
+ P ++ + + K + +K +++ + Q K ++ + + + E +P ++
Sbjct: 1096SAHKPSPENTALLQGKKSREKSHSLSAMTFARNTQSDKAHPIE-EAQLSVEENPATTCTD 1272
Query: 289 --DSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQ 346
+++ + ++KMQS T K+ + + + + ++++S AE+L E S+
Sbjct: 1273ELENDCRSPENKMQSET--AKTPRAWERTTKQSQRRVSKPKAAEELRKGQSSWENSN--- 1437
Query: 347 KIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCK 380
S Q + ++SK+N+ C+
Sbjct: 1438-------------VSNTGQDKLQINSKRNMKDCE 1500
>gb|AE003519.2|AE003519 Drosophila melanogaster genomic scaffold 142000013386050 section 49 of
54, complete sequence
Length = 277023
Score = 50.4 bits (119), Expect = 7e-04
Identities = 43/187 (22%), Positives = 84/187 (43%), Gaps = 2/187 (1%)
Frame = -1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
RK R Q+ AA + +S ++EK + + + +E E KTK ++D+K+ ++
Sbjct: 162966 RKGRTRQRSPEAASIQQSSDEEQEKVSQRLSRKPRTSSE---ESKTKATSAKKDVKKEAK 162796
Query: 283 --SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSE 340
S+ ++ + +K K S+ K+K D + K + S SE++Q D++
Sbjct: 162795 TPSNKTNNSASLTKIKKKTTDSSSLNKAKGDE---NPKQESQESTSSESDQDDNDN-DND 162628
Query: 341 TSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQ 400
+ +Q+ P E+ + ++E+ + + T K RS H+K+ +
Sbjct: 162627 EEEEDQEEDEEEPEEEDDDEEQDKKKEKRVGRRPGNTLKKRIAHKLNTMTRSKHRKELEL 162448
Query: 401 TLANDTV 407
LAN V
Sbjct: 162447 QLANSKV 162427
>gb|AC009372.5| Drosophila melanogaster 3L BAC RP98-48N4 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 175089
Score = 50.4 bits (119), Expect = 7e-04
Identities = 43/187 (22%), Positives = 84/187 (43%), Gaps = 2/187 (1%)
Frame = +3
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
RK R Q+ AA + +S ++EK + + + +E E KTK ++D+K+ ++
Sbjct: 81819 RKGRTRQRSPEAASIQQSSDEEQEKVSQRLSRKPRTSSE---ESKTKATSAKKDVKKEAK 81989
Query: 283 --SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSE 340
S+ ++ + +K K S+ K+K D + K + S SE++Q D++
Sbjct: 81990 TPSNKTNNSASLTKIKKKTTDSSSLNKAKGDE---NPKQESQESTSSESDQDDNDN-DND 82157
Query: 341 TSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQ 400
+ +Q+ P E+ + ++E+ + + T K RS H+K+ +
Sbjct: 82158 EEEEDQEEDEEEPEEEDDDEEQDKKKEKRVGRRPGNTLKKRIAHKLNTMTRSKHRKELEL 82337
Query: 401 TLANDTV 407
LAN V
Sbjct: 82338 QLANSKV 82358
>ref|NM_059022.1| helicase
Length = 4080
Score = 49.7 bits (117), Expect = 0.001
Identities = 69/374 (18%), Positives = 134/374 (35%), Gaps = 1/374 (0%)
Frame = +1
Query: 226 RKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHP 285
RKS K +S+S + ++ D+K + + ++K+K R +
Sbjct: 226 RKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEE 405
Query: 286 VSSDSEGKVLKSKMQSSTHAGKSKKDALK-GSSKHRKKMSYESEAEQLMLSGLDSETSDG 344
S+ K K+K Q+S+ + + ++ K SK K+ S + AE S D + S
Sbjct: 406 REQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKK 585
Query: 345 EQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLAN 404
+K + + + S + ++ + K K +S +A ++ KK K+ +
Sbjct: 586 SKKGLKKKAKSESESESEDEKEVKKSKKKSKKVVKKESESEDEAPEK---KKTEKRKRSK 756
Query: 405 DTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXXXXXXXXXXXXXXXMFTSPPHQELQ 464
+ +P+P++ K + P ++ +
Sbjct: 757 TSSEESSESEKSDEEEEEKESSPKPKKKKPLAVKKLSSDEESEESDVEVL----PQKKKR 924
Query: 465 TSVLQKLAKSEKAEKVLHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGK 524
+V L + EK + +DV K K + + S S+ S+T + K
Sbjct: 925 GAV--TLISDSEDEKDQKSESEASDVEEKVSKKKAKKQE---SSESGSDSSEGSITVNRK 1089
Query: 525 MLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKSNRHQRLQHSPAAEKAMG 584
KK K+ + DS + +++ + R +RL EK
Sbjct: 1090SKKKEKPEKKKKGIIM----------DSSKLQKETIDAERAEKERRKRL------EKKQK 1221
Query: 585 PESGLVLEHSEKYT 598
+G+VLE E T
Sbjct: 1222EFNGIVLEEGEDLT 1263
>gb|AC084654.1|CBRG45O23 Caenorhabditis briggsae cosmid G45O23, complete sequence
Length = 34686
Score = 49.7 bits (117), Expect = 0.001
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Frame = -1
Query: 225 NRKSQK-----DGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDL-- 277
+RKSQK D S V K + S ++ + DKK + + + + K ++ Q+DL
Sbjct: 5109 SRKSQKGKRVNDKSEREVSKKEGSRRDSSKDKKQDSSDRKEDESPLNKKESDSSQKDLPV 4930
Query: 278 --KRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLS 335
K TS+S + + + KS + +S + + + SSK K ES+ +++ S
Sbjct: 4929 KKKATSKSAGSTRSEKSRSEKSNKEERRQKEQSNQKSAR-SSKSDKNRGAESKKKKVERS 4753
Query: 336 GLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHK 395
S+ DG++K D S E+ S+K N + K Q K R HK
Sbjct: 4752 KRSSKEDDGKRKKNSSRSGRDEKSQSFTVPLEKKKSAKSNRSSSKDQDLRKKKSSRDTHK 4573
Query: 396 KQ 397
++
Sbjct: 4572 EE 4567
>gb|AF134186.1|AF134186 Caenorhabditis elegans XNP-1 (xnp-1) mRNA, complete cds
Length = 4326
Score = 49.7 bits (117), Expect = 0.001
Identities = 69/374 (18%), Positives = 134/374 (35%), Gaps = 1/374 (0%)
Frame = +1
Query: 226 RKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHP 285
RKS K +S+S + ++ D+K + + ++K+K R +
Sbjct: 250 RKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEE 429
Query: 286 VSSDSEGKVLKSKMQSSTHAGKSKKDALK-GSSKHRKKMSYESEAEQLMLSGLDSETSDG 344
S+ K K+K Q+S+ + + ++ K SK K+ S + AE S D + S
Sbjct: 430 REQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKK 609
Query: 345 EQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLAN 404
+K + + + S + ++ + K K +S +A ++ KK K+ +
Sbjct: 610 SKKGLKKKAKSESESESEDEKEVKKSKKKSKKVVKKESESEDEAPEK---KKTEKRKRSK 780
Query: 405 DTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXXXXXXXXXXXXXXXMFTSPPHQELQ 464
+ +P+P++ K + P ++ +
Sbjct: 781 TSSEESSESEKSDEEEEEKESSPKPKKKKPLAVKKLSSDEESEESDVEVL----PQKKKR 948
Query: 465 TSVLQKLAKSEKAEKVLHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSGK 524
+V L + EK + +DV K K + + S S+ S+T + K
Sbjct: 949 GAV--TLISDSEDEKDQKSESEASDVEEKVSKKKAKKQE---SSESGSDSSEGSITVNRK 1113
Query: 525 MLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKSNRHQRLQHSPAAEKAMG 584
KK K+ + DS + +++ + R +RL EK
Sbjct: 1114SKKKEKPEKKKKGIIM----------DSSKLQKETIDAERAEKERRKRL------EKKQK 1245
Query: 585 PESGLVLEHSEKYT 598
+G+VLE E T
Sbjct: 1246EFNGIVLEEGEDLT 1287
>gb|M25718.1|HUMRGRSAL Human rDNA and 4 Alu repeats
Length = 4580
Score = 48.1 bits (113), Expect = 0.004
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 12/190 (6%)
Frame = -2
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVH-SEQKTKNVRVQRDLKRTS 281
RK RK ++ + K ++ + K A KK K + + H S+Q K + K T
Sbjct: 2680 RKKRKQERKHESKQARKQENKEARKQARKKQKKESKKTRKHESKQARKQENKEARKKETK 2501
Query: 282 ESHPVSSDSEGKVLKSKMQSSTHAGKS---KKDALKGSS------KHRKKMSYESEAEQL 332
E K +K + + + K K+D+ K S ++++K + +Q
Sbjct: 2500 ERKKTRKQESTKAIKQESKQERNKRKKEIEKQDSTKASKQESKQERNKRKKERKKTGKQE 2321
Query: 333 MLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQS--ASKAYQ 390
+ S E K R+ +++ S + +++ KK Q+S ASK +
Sbjct: 2320 ARKQASKKASRKETKERKKSRKQESTKASKQESKQERKKRKKERKKTGKQESTKASKQAR 2141
Query: 391 RSVHKKQTKQ 400
+ KKQ K+
Sbjct: 2140 KQARKKQKKE 2111
>gb|U13369.1|HSU13369 Human ribosomal DNA complete repeating unit
Length = 42999
Score = 48.1 bits (113), Expect = 0.004
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 12/190 (6%)
Frame = -3
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVH-SEQKTKNVRVQRDLKRTS 281
RK RK ++ + K ++ + K A KK K + + H S+Q K + K T
Sbjct: 40591 RKKRKQERKHESKQARKQENKEARKQARKKQKKESKKTRKHESKQARKQENKEARKKETK 40412
Query: 282 ESHPVSSDSEGKVLKSKMQSSTHAGKS---KKDALKGSS------KHRKKMSYESEAEQL 332
E K +K + + + K K+D+ K S ++++K + +Q
Sbjct: 40411 ERKKTRKQESTKAIKQESKQERNKRKKEIEKQDSTKASKQESKQERNKRKKERKKTGKQE 40232
Query: 333 MLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQS--ASKAYQ 390
+ S E K R+ +++ S + +++ KK Q+S ASK +
Sbjct: 40231 ARKQASKKASRKETKERKKSRKQESTKASKQESKQERKKRKKERKKTGKQESTKASKQAR 40052
Query: 391 RSVHKKQTKQ 400
+ KKQ K+
Sbjct: 40051 KQARKKQKKE 40022
>gb|M18740.1|HUMRGRSALU Human chromosomal t(X;21)(p21;p12) translocation in ribosomal DNA
Length = 2933
Score = 48.1 bits (113), Expect = 0.004
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 12/190 (6%)
Frame = -2
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVH-SEQKTKNVRVQRDLKRTS 281
RK RK ++ + K ++ + K A KK K + + H S+Q K + K T
Sbjct: 1717 RKKRKQERKHESKQARKQENKEARKQARKKQKKESKKTRKHESKQARKQENKEARKKETK 1538
Query: 282 ESHPVSSDSEGKVLKSKMQSSTHAGKS---KKDALKGSS------KHRKKMSYESEAEQL 332
E K +K + + + K K+D+ K S ++++K + +Q
Sbjct: 1537 ERKKTRKQESTKAIKQESKQERNKRKKEIEKQDSTKASKQESKQERNKRKKERKKTGKQE 1358
Query: 333 MLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQS--ASKAYQ 390
+ S E K R+ +++ S + +++ KK Q+S ASK +
Sbjct: 1357 ARKQASKKASRKETKERKKSRKQESTKASKQESKQERKKRKKERKKTGKQESTKASKQAR 1178
Query: 391 RSVHKKQTKQ 400
+ KKQ K+
Sbjct: 1177 KQARKKQKKE 1148
>gb|AC007688.15|AC007688 Homo sapiens 12p12-27.2-31.7 BAC RPCI11-392P7 (Roswell Park Cancer
Institute Human BAC Library) complete sequence
Length = 161577
Score = 45.8 bits (107), Expect = 0.018
Identities = 40/184 (21%), Positives = 72/184 (38%), Gaps = 6/184 (3%)
Frame = +1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRV-----QRDL 277
RK ++ +K+G K + ++EK ++ K + E E+K +N R QR+
Sbjct: 50917 RKRKEGRKEGKREKERKKKEREREKKEGRERKKRKRKKEGKGEEKEENGRKEERKGQREE 51096
Query: 278 KR-TSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSG 336
R E EGK K + + K KK+ K K RKK + E+ G
Sbjct: 51097 GRGRKEGKRERKKKEGKKEKKEGRKEGRERKRKKERKKERKKERKKEKRKGRKERKERKG 51276
Query: 337 LDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKK 396
+ + G ++ R+ +E+ KK K ++ + ++ KK
Sbjct: 51277 EEEKEEKGRKEKEGRKKRKKKGKKEKREGRERKKEGKKGRKEGKKERKEGRKERKKERKK 51456
Query: 397 QTKQ 400
+ K+
Sbjct: 51457 ERKK 51468
Score = 38.9 bits (89), Expect = 2.3
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 3/181 (1%)
Frame = +2
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
RK + +K+G K + KEK KK + E E++ K +++ K
Sbjct: 50909 RKKERERKEGRKEKERKKEKRRKEKERRKKEGKERKEKERKKEKEKKRRKMEGRRKGRDR 51088
Query: 283 SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALK-GSSKHRKKMSYESEAEQLMLSGLD--S 339
+ EG+ K K + + KK+ K G + RKK + ++ G +
Sbjct: 51089 GR---KEGEGRKEKEKERKKKERKRRKKEERKEGKERERKKERKKERKKERKKKGKEGRK 51259
Query: 340 ETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTK 399
E + E+K RR E ++E+ K+ K ++ K +R KK+ K
Sbjct: 51260 ERKEKEKKKRRKKEGRRRKEGKRERKKERKRRGKEGKERKKERKEGRK--ERKKEKKEGK 51433
Query: 400 Q 400
+
Sbjct: 51434 K 51436
>emb|Z28327.1|SCYKR102W S.cerevisiae chromosome XI reading frame ORF YKR102w
Length = 10575
Score = 44.7 bits (104), Expect = 0.041
Identities = 82/380 (21%), Positives = 144/380 (37%), Gaps = 32/380 (8%)
Frame = +3
Query: 39 CFECDDTDVTINS-PNATSS---STPLVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSL 94
C EC +T+ T S P ATSS +T + T T + D ++ + + T
Sbjct: 5619 CTECTETESTSTSTPYATSSTGTATSFTASTSNTMTSLVQTDTTVSFSLSSTVSEHT--- 5789
Query: 95 PATPAETVRSKGEPCVFCPEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKL 154
P +V S + + S + SI + +P++ V + V S +
Sbjct: 5790 -NAPTSSVESNASTFISSNKGSVKSYVTSSIHSITPMYPSNQTVTSSSVVSTPITSES-- 5960
Query: 155 SDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSSPSPV--------KDHNVEIESDCEFL 206
S+ ++ S + E + ++T+ VSI+ SSP+ + KD V + L
Sbjct: 5961 SESSASVTILPSTITSEFKPSTMKTKVVSIS-SSPTNLITSYDTTSKDSTVGSSTSSVSL 6137
Query: 207 IDESGCLSFKS-------WFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQ 259
I S S SI N ++ S+ V S+SS+ +T+ ++
Sbjct: 6138 ISSISLPSSYSASSEQIFHSSIVSSNGQALTSFSSTKVSSSESSESHRTSPTTSSESGIK 6317
Query: 260 A---EVHS---------EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGK 307
+ E+ S E T + VQ + + S P+S+ + + + S T +
Sbjct: 6318 SSGVEIESTSTSSFSFHETSTASTSVQISSQFVTPSSPISTVAP---RSTGLNSQTESTN 6488
Query: 308 SKKDALKGSSKHRKKMSYESEAEQLMLSGLDS-ETSDGEQKIRRVMPREDLAVPSAEHQQ 366
S K+ + SS++ + S A + S ETS G + R + R PS Q
Sbjct: 6489 SSKETM--SSENSASVMPSSSATSPKTGKVTSDETSSGFSRDRTTVYRMTSETPSTNEQT 6662
Query: 367 EQMLSSKKNLTPCKYQQSAS 386
+ S C S++
Sbjct: 6663 TLITVSSCESNSCSNTVSSA 6722
>emb|Z22779.1|BTCYLICA B.taurus cylicin mRNA
Length = 2148
Score = 44.3 bits (103), Expect = 0.054
Identities = 43/181 (23%), Positives = 75/181 (40%), Gaps = 3/181 (1%)
Frame = +3
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
+ ++K +KD K D E T + G + N + + +K K ++D K+ +
Sbjct: 1242 KDSKKGKKDSKKDDKKKDAKKDAESTDAESGDSKNAKKD---SKKGKKDDKKKDAKKDAV 1412
Query: 283 SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETS 342
S S+SEG KSK S K KKD K K S ES ++E+
Sbjct: 1413 STDADSESEGDAKKSKKDSK----KDKKDLKKDDQKKPAMKSKES---------TETESD 1553
Query: 343 DGEQKIRRVMPREDLAVPSAEHQQ---EQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTK 399
+K++R ++ + E +SSK+ L + +S+ + S+ K +K
Sbjct: 1554 WESKKVKRDSKKDTKKTAKKATESSGAESDVSSKRYLKKTEMFKSSDAESEESLFKPGSK 1733
Query: 400 Q 400
+
Sbjct: 1734 K 1736
>gb|AF067617.1|CELT04D1 Caenorhabditis elegans cosmid T04D1
Length = 28678
Score = 43.9 bits (102), Expect = 0.070
Identities = 39/178 (21%), Positives = 78/178 (42%), Gaps = 1/178 (0%)
Frame = -3
Query: 226 RKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHP 285
RKS K +S+S + ++ D+K + + ++K+K R +
Sbjct: 2129 RKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEE 1950
Query: 286 VSSDSEGKVLKSKMQSSTHAGKSKKDALK-GSSKHRKKMSYESEAEQLMLSGLDSETSDG 344
S+ K K+K Q+S+ + + ++ K SK K+ S + AE S D + S
Sbjct: 1949 REQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKK 1770
Query: 345 EQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTL 402
+K + + + + +E ++E S KK+ K + S++ + KK+T++ L
Sbjct: 1769 SKKGLKKKAKSE-SESESEDEKEVKKSKKKSK---KVVKKESESEDEAPEKKKTEKRL 1608
>gb|AF000196.1| Caenorhabditis elegans cosmid B0041, complete sequence
Length = 28609
Score = 43.9 bits (102), Expect = 0.070
Identities = 39/178 (21%), Positives = 78/178 (42%), Gaps = 1/178 (0%)
Frame = -3
Query: 226 RKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHP 285
RKS K +S+S + ++ D+K + + ++K+K R +
Sbjct: 28238 RKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEE 28059
Query: 286 VSSDSEGKVLKSKMQSSTHAGKSKKDALK-GSSKHRKKMSYESEAEQLMLSGLDSETSDG 344
S+ K K+K Q+S+ + + ++ K SK K+ S + AE S D + S
Sbjct: 28058 REQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKK 27879
Query: 345 EQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTL 402
+K + + + + +E ++E S KK+ K + S++ + KK+T++ L
Sbjct: 27878 SKKGLKKKAKSE-SESESEDEKEVKKSKKKSK---KVVKKESESEDEAPEKKKTEKRL 27717
>gb|M94389.1|SQDNF220A Squid neurofilament protein (NF220) mRNA, complete cds
Length = 4074
Score = 43.1 bits (100), Expect = 0.12
Identities = 80/414 (19%), Positives = 145/414 (34%), Gaps = 12/414 (2%)
Frame = +1
Query: 166 SPLLVEEAKTPVQTRTVSIAPSSPSPVKDHNVEI-ESDCEFLIDESGCLSFKSWFSIPRK 224
SP+++E AK+P ++P V +I S + + S KS S P
Sbjct: 2497 SPIIMEPAKSPKDESEKELSPERSESVMSGKSQITSSSAKSPVPSEKADSEKSATS-PTP 2673
Query: 225 NRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESH 284
+ K + SA S S+ +K+A + ++++ + E+ +
Sbjct: 2674 SEKVDDESSARSPTHSDRSESQKSARSPMTSDHIKSPIDFEKAESEKSALSYKSSDHDKS 2853
Query: 285 PVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYES----EAEQLMLSGLDSE 340
PV S+ ++ + +S+K A + K S E+E+ S + SE
Sbjct: 2854 PVPSEKAESEKSARSPVPSEKAESEKSARSPVTSEPAKSPVPSEKAAESEKSARSPVPSE 3033
Query: 341 TSDGEQKIRRVMPREDLAVPSAEHQ---QEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQ 397
++ E+ R +P E + E+ S K +P Q + +++ +K
Sbjct: 3034 KAESEKSARSPVPSEKAESEKSARSPVPSEKDESEKSAKSPTSDQARSPVPSEKAESEKS 3213
Query: 398 TKQTLANDTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXXXXXXXXXXXXXXXMFTS 457
+ + ++ V +P P S+ +
Sbjct: 3214 ARSPVTSEHV-----------------KSPVPSEKSESEKSARSPVTSEHVKSPVPSEKA 3342
Query: 458 PPHQELQTSVLQKLAK----SEKAEKVLHALESVTDVNNKTPLKAVELLQHLVDSMKNSE 513
+ ++ V + AK SEKAE A VT + +P+ + + S SE
Sbjct: 3343 ESEKSAKSPVASEPAKSPIPSEKAESEKSAKSPVTSEHATSPVASEKSESGKSKSPAASE 3522
Query: 514 KKRSSVTSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKS 567
K S + S +K K A S E TT + SS S++ KS
Sbjct: 3523 KAESEKSKSPVPSEK---EGSKTAGSPGSSDEGITTTTTTSSQERRSMSEEKKS 3675
>ref|NM_022869.1| Rattus norvegicus nucleolar phosphoprotein p130 (Nopp140), mRNA
Length = 3609
Score = 42.7 bits (99), Expect = 0.16
Identities = 72/307 (23%), Positives = 115/307 (37%), Gaps = 12/307 (3%)
Frame = +2
Query: 97 TPAETVRSKGEPCVFCPEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAK--- 153
TPA+TV SK P P + +DS +DS E+PAK
Sbjct: 1097 TPAKTVVSK-TPAKPAPVKKKAESSSDSSDSDSSED----------------EAPAKPVS 1225
Query: 154 -LSDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAP------SSPSPVKDHNVEIESDCEFL 206
P P V P + TP Q P SS S + + E E+ + +
Sbjct: 1226 ATKSPLSKPAVTPKPPAAKAVATPKQPAGSGQKPQSRKADSSSSEEESSSSEEEATKKSV 1405
Query: 207 IDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQ 266
++ K+ S+P K + + G ++ +S SS++EK K A +
Sbjct: 1406 TTPKARVTAKAAPSLPAK-QAPRAGGDSSSDSESSSSEEEKKTPPKPPAKKKAAGAAVPK 1582
Query: 267 KTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYE 326
T + + +S S SS+ E K KSK AGK+ + + S + E
Sbjct: 1583 PTPVKKAAAESSSSSSSSEDSSEEEKKKPKSKATPKPQAGKA--NGVPASQNGKAGKESE 1756
Query: 327 SEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTP--CKYQQS 384
E E + + T G K R+ + A +A Q +++ N P K ++
Sbjct: 1757 EEEEDTEQNKKAAGTKPGSGKKRK---HNETADEAATPQSKKVKLQTPNTFPKRKKGEKR 1927
Query: 385 ASKAYQR 391
AS ++R
Sbjct: 1928 ASSPFRR 1948
>gb|M94287.1|RATNOP140A Rattus norvegicus nucleolar phosphoprotein of 140kD, Nopp140 mRNA,
complete cds
Length = 3609
Score = 42.7 bits (99), Expect = 0.16
Identities = 72/307 (23%), Positives = 115/307 (37%), Gaps = 12/307 (3%)
Frame = +2
Query: 97 TPAETVRSKGEPCVFCPEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAK--- 153
TPA+TV SK P P + +DS +DS E+PAK
Sbjct: 1097 TPAKTVVSK-TPAKPAPVKKKAESSSDSSDSDSSED----------------EAPAKPVS 1225
Query: 154 -LSDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAP------SSPSPVKDHNVEIESDCEFL 206
P P V P + TP Q P SS S + + E E+ + +
Sbjct: 1226 ATKSPLSKPAVTPKPPAAKAVATPKQPAGSGQKPQSRKADSSSSEEESSSSEEEATKKSV 1405
Query: 207 IDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQ 266
++ K+ S+P K + + G ++ +S SS++EK K A +
Sbjct: 1406 TTPKARVTAKAAPSLPAK-QAPRAGGDSSSDSESSSSEEEKKTPPKPPAKKKAAGAAVPK 1582
Query: 267 KTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYE 326
T + + +S S SS+ E K KSK AGK+ + + S + E
Sbjct: 1583 PTPVKKAAAESSSSSSSSEDSSEEEKKKPKSKATPKPQAGKA--NGVPASQNGKAGKESE 1756
Query: 327 SEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTP--CKYQQS 384
E E + + T G K R+ + A +A Q +++ N P K ++
Sbjct: 1757 EEEEDTEQNKKAAGTKPGSGKKRK---HNETADEAATPQSKKVKLQTPNTFPKRKKGEKR 1927
Query: 385 ASKAYQR 391
AS ++R
Sbjct: 1928 ASSPFRR 1948
>gb|M94288.1|RATNOP140B Rattus norvegicus nucleolar phosphoprotein of 140kD, Nopp140 mRNA,
complete cds
Length = 3235
Score = 42.7 bits (99), Expect = 0.16
Identities = 72/307 (23%), Positives = 115/307 (37%), Gaps = 12/307 (3%)
Frame = +3
Query: 97 TPAETVRSKGEPCVFCPEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAK--- 153
TPA+TV SK P P + +DS +DS E+PAK
Sbjct: 1845 TPAKTVVSK-TPAKPAPVKKKAESSSDSSDSDSSED----------------EAPAKPVS 1973
Query: 154 -LSDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAP------SSPSPVKDHNVEIESDCEFL 206
P P V P + TP Q P SS S + + E E+ + +
Sbjct: 1974 ATKSPLSKPAVTPKPPAAKAVATPKQPAGSGQKPQSRKADSSSSEEESSSSEEEATKKSV 2153
Query: 207 IDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQ 266
++ K+ S+P K + + G ++ +S SS++EK K A +
Sbjct: 2154 TTPKARVTAKAAPSLPAK-QAPRAGGDSSSDSESSSSEEEKKTPPKPPAKKKAAGAAVPK 2330
Query: 267 KTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYE 326
T + + +S S SS+ E K KSK AGK+ + + S + E
Sbjct: 2331 PTPVKKAAAESSSSSSSSEDSSEEEKKKPKSKATPKPQAGKA--NGVPASQNGKAGKESE 2504
Query: 327 SEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTP--CKYQQS 384
E E + + T G K R+ + A +A Q +++ N P K ++
Sbjct: 2505 EEEEDTEQNKKAAGTKPGSGKKRK---HNETADEAATPQSKKVKLQTPNTFPKRKKGEKR 2675
Query: 385 ASKAYQR 391
AS ++R
Sbjct: 2676 ASSPFRR 2696
>dbj|AK014498.1|AK014498 Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched
library, clone:4432415N06:homolog to BCL7A PROTEIN, full
insert sequence
Length = 2515
Score = 42.7 bits (99), Expect = 0.16
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Frame = +3
Query: 224 KNRKSQKDGSA-APVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
KN+K KD + V ++S D N N Q+ + K
Sbjct: 306 KNKKKGKDEKCGSEVTTPENSSSPGMMDMHDDNSN-QSSIADASPIKQENSSNSSPAPET 482
Query: 283 SHPVSSD-SEGKVLKSKMQSSTHAGK---SKKDALKGSSKHRKKMSYESEAEQLMLSGLD 338
+ PV SD +E K +++ H G S++ + S ++ S ++E + SGL
Sbjct: 483 NPPVPSDGTEAKADEAQADGKEHPGAEDASEEQNSQSSMENSVNSSEKAERQPSAESGLA 662
Query: 339 SETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNL 376
+ETS Q + V P + + + +++ E+M ++++NL
Sbjct: 663 AETSAVSQDLEGVPPSKKMKLEASQQNSEEM*TARRNL 776
>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88
Length = 198493
Score = 42.0 bits (97), Expect = 0.27
Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 1/200 (0%)
Frame = +3
Query: 208 DESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQK 267
DESG S KS KN + +K+ K QSS++E + GKN + S+ +
Sbjct: 88959 DESGS-SGKSTGYQQTKNEEDEKE-------KVQSSEEESKVKESGKNEKDASS--SQDE 89108
Query: 268 TKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYES 327
+K + +R K S S + E + K + + S+ +SK++ + K E+
Sbjct: 89109 SKEEKPERKKKEESSSQGEGKEEEPE--KREKEDSSSQEESKEEEPENKEKEASSSQEEN 89282
Query: 328 EAEQLMLSGL-DSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSAS 386
E ++ + +S + +G + ++ S+E Q+++ +S+K + + S++
Sbjct: 89283 EIKETEIKEKEESSSQEGNE-------NKETEKKSSESQRKENTNSEKKIEQVESTDSSN 89441
Query: 387 KAYQRSVHKKQTKQTLANDT 406
++K+ NDT
Sbjct: 89442 TQKGDEQKTDESKRESGNDT 89501
>emb|AL035709.1|ATT28I19 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project)
Length = 110766
Score = 42.0 bits (97), Expect = 0.27
Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 1/200 (0%)
Frame = +2
Query: 208 DESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQK 267
DESG S KS KN + +K+ K QSS++E + GKN + S+ +
Sbjct: 85256 DESGS-SGKSTGYQQTKNEEDEKE-------KVQSSEEESKVKESGKNEKDASS--SQDE 85405
Query: 268 TKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYES 327
+K + +R K S S + E + K + + S+ +SK++ + K E+
Sbjct: 85406 SKEEKPERKKKEESSSQGEGKEEEPE--KREKEDSSSQEESKEEEPENKEKEASSSQEEN 85579
Query: 328 EAEQLMLSGL-DSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSAS 386
E ++ + +S + +G + ++ S+E Q+++ +S+K + + S++
Sbjct: 85580 EIKETEIKEKEESSSQEGNE-------NKETEKKSSESQRKENTNSEKKIEQVESTDSSN 85738
Query: 387 KAYQRSVHKKQTKQTLANDT 406
++K+ NDT
Sbjct: 85739 TQKGDEQKTDESKRESGNDT 85798
>ref|NM_119943.1| Arabidopsis thaliana chromosome 4 CHR4v12152001 genomic sequence
Length = 1599
Score = 42.0 bits (97), Expect = 0.27
Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 1/200 (0%)
Frame = +1
Query: 208 DESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQK 267
DESG S KS KN + +K+ K QSS++E + GKN + S+ +
Sbjct: 835 DESGS-SGKSTGYQQTKNEEDEKE-------KVQSSEEESKVKESGKNEKDASS--SQDE 984
Query: 268 TKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYES 327
+K + +R K S S + E + K + + S+ +SK++ + K E+
Sbjct: 985 SKEEKPERKKKEESSSQGEGKEEEPE--KREKEDSSSQEESKEEEPENKEKEASSSQEEN 1158
Query: 328 EAEQLMLSGL-DSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSAS 386
E ++ + +S + +G + ++ S+E Q+++ +S+K + + S++
Sbjct: 1159 EIKETEIKEKEESSSQEGNE-------NKETEKKSSESQRKENTNSEKKIEQVESTDSSN 1317
Query: 387 KAYQRSVHKKQTKQTLANDT 406
++K+ NDT
Sbjct: 1318 TQKGDEQKTDESKRESGNDT 1377
>emb|AL132948.2|CEY39B6A Caenorhabditis elegans cosmid Y39B6A, complete sequence
Length = 246237
Score = 41.6 bits (96), Expect = 0.35
Identities = 67/341 (19%), Positives = 109/341 (31%), Gaps = 6/341 (1%)
Frame = -2
Query: 261 EVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHR 320
EVH +V+ Q D +S S SS S S SS+ + K K + KH
Sbjct: 245054 EVHHHHH--HVKAQ-DSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAKKHL 244884
Query: 321 KKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCK 380
KK ++E+ S S +S S+ +++ KK+
Sbjct: 244883 KKHHKKAESSSSSSSSSSSSSSSSSSS-------------SSSESEDEKHHHKKH----- 244758
Query: 381 YQQSASKAYQRSVHKKQTKQTLANDTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXX 440
+K + + HKK + ++ + +S D
Sbjct: 244757 -----AKKHLKKHHKKAESSSSSSSSSSSSSSSSSSSSSSS-----------ESEDEKHH 244626
Query: 441 XXXXXXXXXXXXXMFTSPPHQELQTSVLQKLAKSEKAEKVLHALESVTDVNNKTPLKAVE 500
+S +S ++ EK HA + ++K +
Sbjct: 244625 HKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAKKHVK-HHKKAASSSS 244449
Query: 501 LLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRA------HKRACSITRDSEPQNTTDSDS 554
S +S SS + K KKVHH+ HK+A S + S S
Sbjct: 244448 SSSSSSSSSSSSSSSSSSESEDEKKKKKVHHKKSHGKKHHKKAAS----------SSSSS 244299
Query: 555 SSAPEVASKKPKSNRHQRLQHSPAAEKAMGPESGLVLEHSE 595
SS+ +S S +H+PA + + G EH E
Sbjct: 244298 SSSSSSSSSSSSSESEDEKKHAPAHHEHHEHKDGAHHEHKE 244176
Score = 37.0 bits (84), Expect = 8.6
Identities = 24/96 (25%), Positives = 42/96 (43%)
Frame = -2
Query: 508 SMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKS 567
S ++ ++K + K LKK HH+ + + S + S +++ S SSS+ E +K
Sbjct: 244799 SSESEDEKHHHKKHAKKHLKK-HHKKAESSSSSSSSSSSSSSSSSSSSSSSESEDEKHHH 244623
Query: 568 NRHQRLQHSPAAEKAMGPESGLVLEHSEKYTSPSKH 603
+H +H AE + S S + KH
Sbjct: 244622 KKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKH 244515
>ref|NM_072183.1| titin
Length = 10455
Score = 41.6 bits (96), Expect = 0.35
Identities = 37/177 (20%), Positives = 72/177 (39%), Gaps = 3/177 (1%)
Frame = +1
Query: 210 SGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTK 269
+G + K + KN+ SAA LK + K+ + + A+ ++ K
Sbjct: 3379 AGADAVKKQKELDEKNKLEANKKSAAGKLKIEEESAAKSKQTVEEQAKLDAQTKAKTAEK 3558
Query: 270 NVRVQRDLKRTSES---HPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYE 326
++++D K T ES V + KVLK K + S + K + K + E
Sbjct: 3559 QTKLEKDEKSTKESESKETVDEKPKKKVLKKKTEKSDSSISQKSETSK--TVVESAGPSE 3732
Query: 327 SEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQ 383
SE +++ + + +D +QK+ + + A ++ + E L + K Q+
Sbjct: 3733 SETQKVADAARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQK 3903
>ref|NM_075332.1| Caenorhabditis elegans
Length = 2208
Score = 41.6 bits (96), Expect = 0.35
Identities = 67/341 (19%), Positives = 109/341 (31%), Gaps = 6/341 (1%)
Frame = +1
Query: 261 EVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHR 320
EVH +V+ Q D +S S SS S S SS+ + K K + KH
Sbjct: 280 EVHHHHH--HVKAQ-DSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAKKHL 450
Query: 321 KKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCK 380
KK ++E+ S S +S S+ +++ KK+
Sbjct: 451 KKHHKKAESSSSSSSSSSSSSSSSSSS-------------SSSESEDEKHHHKKH----- 576
Query: 381 YQQSASKAYQRSVHKKQTKQTLANDTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXX 440
+K + + HKK + ++ + +S D
Sbjct: 577 -----AKKHLKKHHKKAESSSSSSSSSSSSSSSSSSSSSSS-----------ESEDEKHH 708
Query: 441 XXXXXXXXXXXXXMFTSPPHQELQTSVLQKLAKSEKAEKVLHALESVTDVNNKTPLKAVE 500
+S +S ++ EK HA + ++K +
Sbjct: 709 HKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAKKHVK-HHKKAASSSS 885
Query: 501 LLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRA------HKRACSITRDSEPQNTTDSDS 554
S +S SS + K KKVHH+ HK+A S + S S
Sbjct: 886 SSSSSSSSSSSSSSSSSSESEDEKKKKKVHHKKSHGKKHHKKAAS----------SSSSS 1035
Query: 555 SSAPEVASKKPKSNRHQRLQHSPAAEKAMGPESGLVLEHSE 595
SS+ +S S +H+PA + + G EH E
Sbjct: 1036SSSSSSSSSSSSSESEDEKKHAPAHHEHHEHKDGAHHEHKE 1158
Score = 37.0 bits (84), Expect = 8.6
Identities = 24/96 (25%), Positives = 42/96 (43%)
Frame = +1
Query: 508 SMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKS 567
S ++ ++K + K LKK HH+ + + S + S +++ S SSS+ E +K
Sbjct: 535 SSESEDEKHHHKKHAKKHLKK-HHKKAESSSSSSSSSSSSSSSSSSSSSSSESEDEKHHH 711
Query: 568 NRHQRLQHSPAAEKAMGPESGLVLEHSEKYTSPSKH 603
+H +H AE + S S + KH
Sbjct: 712 KKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKH 819
>gb|U80022.2| Caenorhabditis elegans cosmid F12F3, complete sequence
Length = 36859
Score = 41.6 bits (96), Expect = 0.35
Identities = 37/177 (20%), Positives = 72/177 (39%), Gaps = 3/177 (1%)
Frame = -1
Query: 210 SGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTK 269
+G + K + KN+ SAA LK + K+ + + A+ ++ K
Sbjct: 30703 AGADAVKKQKELDEKNKLEANKKSAAGKLKIEEESAAKSKQTVEEQAKLDAQTKAKTAEK 30524
Query: 270 NVRVQRDLKRTSES---HPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYE 326
++++D K T ES V + KVLK K + S + K + K + E
Sbjct: 30523 QTKLEKDEKSTKESESKETVDEKPKKKVLKKKTEKSDSSISQKSETSK--TVVESAGPSE 30350
Query: 327 SEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQ 383
SE +++ + + +D +QK+ + + A ++ + E L + K Q+
Sbjct: 30349 SETQKVADAARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQK 30179
>emb|AL132896.1|CEY39B6B Caenorhabditis elegans cosmid Y39B6B, complete sequence
Length = 207022
Score = 41.6 bits (96), Expect = 0.35
Identities = 67/341 (19%), Positives = 109/341 (31%), Gaps = 6/341 (1%)
Frame = -2
Query: 261 EVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHR 320
EVH +V+ Q D +S S SS S S SS+ + K K + KH
Sbjct: 205839 EVHHHHH--HVKAQ-DSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAKKHL 205669
Query: 321 KKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCK 380
KK ++E+ S S +S S+ +++ KK+
Sbjct: 205668 KKHHKKAESSSSSSSSSSSSSSSSSSS-------------SSSESEDEKHHHKKH----- 205543
Query: 381 YQQSASKAYQRSVHKKQTKQTLANDTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXX 440
+K + + HKK + ++ + +S D
Sbjct: 205542 -----AKKHLKKHHKKAESSSSSSSSSSSSSSSSSSSSSSS-----------ESEDEKHH 205411
Query: 441 XXXXXXXXXXXXXMFTSPPHQELQTSVLQKLAKSEKAEKVLHALESVTDVNNKTPLKAVE 500
+S +S ++ EK HA + ++K +
Sbjct: 205410 HKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAKKHVK-HHKKAASSSS 205234
Query: 501 LLQHLVDSMKNSEKKRSSVTSSGKMLKKVHHRA------HKRACSITRDSEPQNTTDSDS 554
S +S SS + K KKVHH+ HK+A S + S S
Sbjct: 205233 SSSSSSSSSSSSSSSSSSESEDEKKKKKVHHKKSHGKKHHKKAAS----------SSSSS 205084
Query: 555 SSAPEVASKKPKSNRHQRLQHSPAAEKAMGPESGLVLEHSE 595
SS+ +S S +H+PA + + G EH E
Sbjct: 205083 SSSSSSSSSSSSSESEDEKKHAPAHHEHHEHKDGAHHEHKE 204961
Score = 37.0 bits (84), Expect = 8.6
Identities = 24/96 (25%), Positives = 42/96 (43%)
Frame = -2
Query: 508 SMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKS 567
S ++ ++K + K LKK HH+ + + S + S +++ S SSS+ E +K
Sbjct: 205584 SSESEDEKHHHKKHAKKHLKK-HHKKAESSSSSSSSSSSSSSSSSSSSSSSESEDEKHHH 205408
Query: 568 NRHQRLQHSPAAEKAMGPESGLVLEHSEKYTSPSKH 603
+H +H AE + S S + KH
Sbjct: 205407 KKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKH 205300
>ref|XM_032182.1| Homo sapiens adaptor-related protein complex 3, beta 2 subunit
(AP3B2), mRNA
Length = 3274
Score = 41.2 bits (95), Expect = 0.45
Identities = 34/142 (23%), Positives = 56/142 (38%), Gaps = 6/142 (4%)
Frame = +2
Query: 228 SQKDGSAAPVLKSQSS-DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPV 286
S +G + P + S + E +D K + + E SE ++ + R SES
Sbjct: 1925 SDSEGESGPTESADSDPESESESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSESEQS 2104
Query: 287 SSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQ 346
D + K K + A S + + SS +M+ ESE EQL + +T +
Sbjct: 2105 EEDGKRKTKKKVPERKGEASSSDEGSDSSSSSSESEMTSESEEEQLEPASWSRKTPPSSK 2284
Query: 347 -----KIRRVMPREDLAVPSAE 363
K ++ ED PS +
Sbjct: 2285 SAPATKEISLLDLEDFTPPSVQ 2350
>gb|AF022152.1|AF022152 Homo sapiens AP-3 complex beta3B subunit mRNA, complete cds
Length = 3600
Score = 41.2 bits (95), Expect = 0.45
Identities = 34/142 (23%), Positives = 56/142 (38%), Gaps = 6/142 (4%)
Frame = +2
Query: 228 SQKDGSAAPVLKSQSS-DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPV 286
S +G + P + S + E +D K + + E SE ++ + R SES
Sbjct: 2066 SDSEGESGPTESADSDPESESESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSESEQS 2245
Query: 287 SSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQ 346
D + K K + A S + + SS +M+ ESE EQL + +T +
Sbjct: 2246 EEDGKRKTKKKVPERKGEASSSDEGSDSSSSSSESEMTSESEEEQLEPASWSRKTPPSSK 2425
Query: 347 -----KIRRVMPREDLAVPSAE 363
K ++ ED PS +
Sbjct: 2426 SAPATKEISLLDLEDFTPPSVQ 2491
>gb|AE003683.2|AE003683 Drosophila melanogaster genomic scaffold 142000013386035 section 8 of
105, complete sequence
Length = 243076
Score = 41.2 bits (95), Expect = 0.45
Identities = 42/182 (23%), Positives = 86/182 (47%), Gaps = 8/182 (4%)
Frame = +1
Query: 224 KNRKSQKDGSAAPVLKSQS-SDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQ-RDLKRTS 281
++R +D S +Q+ S+KEK + K V+ HSE++ ++ R + RD +R
Sbjct: 116182 RDRDRDRDKSKDKFTAAQAPSEKEKEKSESRKRSAVEPSSHSEKRERHEREKHRDWERER 116361
Query: 282 ESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDS-- 339
E + E + + + +S + G+ + D LKGS K E + + LS +S
Sbjct: 116362 E-----REKEHERERVRSNNSFYNGQREADRLKGSESASTKSRQEQDLSDISLSDEESYL 116526
Query: 340 --ETSDGEQKIRRVM--PREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHK 395
+ S+G ++ +E+L+V + +E ++++N ++S S++ + K
Sbjct: 116527 REKASNGRRRAHNSFYDEKEELSVSPKRNVRES--NTRRN------RKSRSRSRDLGIDK 116682
Query: 396 KQ 397
K+
Sbjct: 116683 KR 116688
>ref|NM_004644.1| Homo sapiens adaptor-related protein complex 3, beta 2 subunit
(AP3B2), mRNA
Length = 3443
Score = 41.2 bits (95), Expect = 0.45
Identities = 34/142 (23%), Positives = 56/142 (38%), Gaps = 6/142 (4%)
Frame = +2
Query: 228 SQKDGSAAPVLKSQSS-DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPV 286
S +G + P + S + E +D K + + E SE ++ + R SES
Sbjct: 2093 SDSEGESGPTESADSDPESESESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSESEQS 2272
Query: 287 SSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQ 346
D + K K + A S + + SS +M+ ESE EQL + +T +
Sbjct: 2273 EEDGKRKTKKKVPERKGEASSSDEGSDSSSSSSESEMTSESEEEQLEPASWSRKTPPSSK 2452
Query: 347 -----KIRRVMPREDLAVPSAE 363
K ++ ED PS +
Sbjct: 2453 SAPATKEISLLDLEDFTPPSVQ 2518
>gb|U37673.1|HSU37673 Human neuron-specific vesicle coat protein and cerebellar
degeneration antigen (beta-NAP) mRNA, complete cds
Length = 3443
Score = 41.2 bits (95), Expect = 0.45
Identities = 34/142 (23%), Positives = 56/142 (38%), Gaps = 6/142 (4%)
Frame = +2
Query: 228 SQKDGSAAPVLKSQSS-DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPV 286
S +G + P + S + E +D K + + E SE ++ + R SES
Sbjct: 2093 SDSEGESGPTESADSDPESESESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSESEQS 2272
Query: 287 SSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQ 346
D + K K + A S + + SS +M+ ESE EQL + +T +
Sbjct: 2273 EEDGKRKTKKKVPERKGEASSSDEGSDSSSSSSESEMTSESEEEQLEPASWSRKTPPSSK 2452
Query: 347 -----KIRRVMPREDLAVPSAE 363
K ++ ED PS +
Sbjct: 2453 SAPATKEISLLDLEDFTPPSVQ 2518
>gb|AC009350.4|AC009350 Drosophila melanogaster, chromosome 3R, region 85D-85E, BAC clone
BACR19N07, complete sequence
Length = 176933
Score = 41.2 bits (95), Expect = 0.45
Identities = 42/182 (23%), Positives = 86/182 (47%), Gaps = 8/182 (4%)
Frame = +2
Query: 224 KNRKSQKDGSAAPVLKSQS-SDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQ-RDLKRTS 281
++R +D S +Q+ S+KEK + K V+ HSE++ ++ R + RD +R
Sbjct: 87227 RDRDRDRDKSKDKFTAAQAPSEKEKEKSESRKRSAVEPSSHSEKRERHEREKHRDWERER 87406
Query: 282 ESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDS-- 339
E + E + + + +S + G+ + D LKGS K E + + LS +S
Sbjct: 87407 E-----REKEHERERVRSNNSFYNGQREADRLKGSESASTKSRQEQDLSDISLSDEESYL 87571
Query: 340 --ETSDGEQKIRRVM--PREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHK 395
+ S+G ++ +E+L+V + +E ++++N ++S S++ + K
Sbjct: 87572 REKASNGRRRAHNSFYDEKEELSVSPKRNVRES--NTRRN------RKSRSRSRDLGIDK 87727
Query: 396 KQ 397
K+
Sbjct: 87728 KR 87733
>gb|BC015040.1|BC015040 Homo sapiens, clone IMAGE:3910222, mRNA
Length = 1795
Score = 40.8 bits (94), Expect = 0.59
Identities = 45/183 (24%), Positives = 79/183 (42%), Gaps = 5/183 (2%)
Frame = +1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
RK +K QK S KS SS ++ + ++ SE K ++QR ++ ++
Sbjct: 793 RKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETS-ESSSESESNNKEKKIQRKKRKKNK 969
Query: 283 -SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSET 341
S +SDSE K K + S + K K R + +ES E S DS+
Sbjct: 970 CSGHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPR-FLKHESSREDSKWSHSDSDK 1146
Query: 342 SDGEQK---IRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKY-QQSASKAYQRSVHKKQ 397
K +R R++ + S H +E+ ++ +P Y Q+ K QR+ ++Q
Sbjct: 1147KSRTHKHSPEKRGSERKEGS--SRSHGREERSRRSRSRSPGSYKQRETRKRAQRNPGEEQ 1320
Query: 398 TKQ 400
+++
Sbjct: 1321SRR 1329
>gb|AF056936.1|AF056936 Plasmodium falciparum mature parasite-infected erythrocyte surface
antigen gene, complete cds
Length = 5420
Score = 40.8 bits (94), Expect = 0.59
Identities = 49/257 (19%), Positives = 107/257 (41%), Gaps = 3/257 (1%)
Frame = +2
Query: 153 KLSDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGC 212
K D E+ V+G +++EE K V+ R VK N + E+ ++ E
Sbjct: 3086 KEKDTENKDKVIGQEIIIEEIKKEVKKR-----------VKKRNNKNENKDNVIVQEIMN 3232
Query: 213 LSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEV---HSEQKTK 269
+ + K + +K+ +K + KEK K+ + + + EV +E K K
Sbjct: 3233 EMLRKDTANKDKVIEQEKEKEE---VKEKEEVKEKEEVKEKEEVKEKEEVKEKDTESKDK 3403
Query: 270 NVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEA 329
+ +++ + E ++++ KV+ ++ + KK K ++K+ K +
Sbjct: 3404 EIEQEKEKEEVKEVKEKDTENKDKVIGQEIIIEEIKKEVKKRVKKRNNKNENKDNV--IV 3577
Query: 330 EQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAY 389
+++M ++ + + + K+ +E V E +E+ +K K +S K
Sbjct: 3578 QEIMNEDVNEKDTANKDKVIE-QEKEKEEVKEKEEVKEKEEVKEKEEVKEKDTESKDKEI 3754
Query: 390 QRSVHKKQTKQTLANDT 406
++ K++ K+ DT
Sbjct: 3755 EQEKEKEEVKEVKEKDT 3805
>ref|NM_026177.1| Mus musculus RIKEN cDNA 1200011I18 gene (1200011I18Rik), mRNA
Length = 3228
Score = 40.8 bits (94), Expect = 0.59
Identities = 52/207 (25%), Positives = 87/207 (41%), Gaps = 22/207 (10%)
Frame = +2
Query: 146 GLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSSPSPVK-DHNVEIESDCE 204
G +SP K +DPG V S EEA++ V P+ PVK E E +
Sbjct: 440 GFIKSPQKNDKGREDPGQVSSFFNSEEAESGEDEDIVGPMPAK-GPVK*SVTTEFEKRAQ 616
Query: 205 FL--------IDESGCLSFKSWFSI-----------PR--KNRKSQKDGSAAPVLKSQSS 243
+ D S ++ +SW + PR K R K G +S +
Sbjct: 617 RMKEKLTKGDDDSSKPITRESWMTELPPEMKEFGLGPRTFKRRADDKSGD-----RSVWT 781
Query: 244 DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSST 303
D ++K K + + S++ +N+ RD KR +E VSS +E K +S+
Sbjct: 782 DTPADRERKAKEIQEARKSFSKKDEENILSGRD-KRLAEQ--VSSYNESK--RSESLMDI 946
Query: 304 HAGKSKKDALKGSSKHRKKMSYESEAE 330
H K K A + +KH++++ ++ + +
Sbjct: 947 HHKKLKSKAAEDKNKHQERIPFDRDKD 1027
>dbj|AK004707.1|AK004707 Mus musculus adult male lung cDNA, RIKEN full-length enriched
library, clone:1200011I18:homolog to LIPOPOLYSACCHARIDE
SPECIFIC RESPONSE-7 PROTEIN (LSR7), full insert sequence
Length = 3228
Score = 40.8 bits (94), Expect = 0.59
Identities = 52/207 (25%), Positives = 87/207 (41%), Gaps = 22/207 (10%)
Frame = +2
Query: 146 GLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSSPSPVK-DHNVEIESDCE 204
G +SP K +DPG V S EEA++ V P+ PVK E E +
Sbjct: 440 GFIKSPQKNDKGREDPGQVSSFFNSEEAESGEDEDIVGPMPAK-GPVK*SVTTEFEKRAQ 616
Query: 205 FL--------IDESGCLSFKSWFSI-----------PR--KNRKSQKDGSAAPVLKSQSS 243
+ D S ++ +SW + PR K R K G +S +
Sbjct: 617 RMKEKLTKGDDDSSKPITRESWMTELPPEMKEFGLGPRTFKRRADDKSGD-----RSVWT 781
Query: 244 DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSST 303
D ++K K + + S++ +N+ RD KR +E VSS +E K +S+
Sbjct: 782 DTPADRERKAKEIQEARKSFSKKDEENILSGRD-KRLAEQ--VSSYNESK--RSESLMDI 946
Query: 304 HAGKSKKDALKGSSKHRKKMSYESEAE 330
H K K A + +KH++++ ++ + +
Sbjct: 947 HHKKLKSKAAEDKNKHQERIPFDRDKD 1027
>gb|AC018470.11| Homo sapiens BAC clone RP11-572N21 from 2, complete sequence
Length = 174437
Score = 40.8 bits (94), Expect = 0.59
Identities = 45/183 (24%), Positives = 79/183 (42%), Gaps = 5/183 (2%)
Frame = -1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
RK +K QK S KS SS ++ + ++ SE K ++QR ++ ++
Sbjct: 44777 RKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETS-ESSSESESNNKEKKIQRKKRKKNK 44601
Query: 283 -SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSET 341
S +SDSE K K + S + K K R + +ES E S DS+
Sbjct: 44600 CSGHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPR-FLKHESSREDSKWSHSDSDK 44424
Query: 342 SDGEQK---IRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKY-QQSASKAYQRSVHKKQ 397
K +R R++ + S H +E+ ++ +P Y Q+ K QR+ ++Q
Sbjct: 44423 KSRTHKHSPEKRGSERKEGS--SRSHGREERSRRSRSRSPGSYKQRETRKRAQRNPGEEQ 44250
Query: 398 TKQ 400
+++
Sbjct: 44249 SRR 44241
>gb|AC009182.4|AC009182 Drosophila melanogaster, chromosome 2R, region 60A2-60A3, BAC clone
BACR05F24, complete sequence
Length = 147086
Score = 40.4 bits (93), Expect = 0.78
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 12/188 (6%)
Frame = -1
Query: 226 RKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHP 285
R++++ + P+L+ ++ KEK ++ + + + EQK + Q D + E+
Sbjct: 118910 RRTEEKVKSTPLLQYLANKKEKRREEARRRNEEKRKQREEQKLLRLAAQSDASKLKEAEG 118731
Query: 286 VSSDSE-GKVLKSKMQSSTHAGKSKKDALKGSSKHR--KKMSYESEAEQLMLSGLDSETS 342
+ K K ++ +G DA SK R + E EQ L D +
Sbjct: 118730 GGGGGDTKKPAKKDVKDPQSSGSQANDAKASRSKRRTERDQRRREEHEQRKLVKRDKKKD 118551
Query: 343 DGEQKIRRVMPREDLAVPSAEHQQEQMLSS-----KKNLTPCKYQQ----SASKAYQRSV 393
DG+ K + ++D PS+ Q + S KK P + S S A + S
Sbjct: 118550 DGQGK-QDKQDKQDKGKPSSGKQNKNSKSMDIVILKKANKPESNESLDVPSTSNAAEASK 118374
Query: 394 HKKQTKQT 401
K T+ T
Sbjct: 118373 EKPATENT 118350
>gb|AY061628.1| Drosophila melanogaster SD10611 full length cDNA
Length = 2788
Score = 40.4 bits (93), Expect = 0.78
Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%)
Frame = +1
Query: 220 SIPRKNRKSQKDGSAAPVLKSQSSDKEKTADK-KGKNMNVQAEVHSEQKTKNVRVQRDLK 278
S+ + + QK +A L+SQ + ++ A++ + K ++Q E+ EQ+ KN + ++L+
Sbjct: 1402 SLTDAHAQQQKQANA---LQSQLQEAQQRAEQLQAKEQHLQQELQ-EQREKNNQQHKELQ 1569
Query: 279 RTSESHPVSSDSEGKVLKSKMQSSTHAGKSKK---DALKGSSKHRKKMSYESEAEQLMLS 335
+ V+++ G +K + ++ DA+K S + + S++ EQ++ +
Sbjct: 1570 -LQQQKAVAANGGGSASSAKSEQQRIRDLYQRLYPDAVKAQSGNALQASFDQWLEQVLAT 1746
Query: 336 GLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLT--------PCKYQQSASK 387
+ + QK+ + + Q SS N T QS+S
Sbjct: 1747 HVKQQQDKLRQKLDAEKSEKQSSSSHKSTQSSNSSSSNHNSTHNNISSNNSSSNSQSSSA 1926
Query: 388 AYQRSVHKKQTKQTLANDTVXXXXXXXXXXXXXXXXXXNPEPRRWK 433
A Q+ +HK+ + ND + + W+
Sbjct: 1927 AEQQELHKQNLQLRECNDKLTQLVTKTTNTLMDLEERAREQDEHWR 2064
>gb|AE003462.1|AE003462 Drosophila melanogaster genomic scaffold 142000013386038 section 11 of
15, complete sequence
Length = 300542
Score = 40.4 bits (93), Expect = 0.78
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 12/188 (6%)
Frame = -1
Query: 226 RKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHP 285
R++++ + P+L+ ++ KEK ++ + + + EQK + Q D + E+
Sbjct: 116774 RRTEEKVKSTPLLQYLANKKEKRREEARRRNEEKRKQREEQKLLRLAAQSDASKLKEAEG 116595
Query: 286 VSSDSE-GKVLKSKMQSSTHAGKSKKDALKGSSKHR--KKMSYESEAEQLMLSGLDSETS 342
+ K K ++ +G DA SK R + E EQ L D +
Sbjct: 116594 GGGGGDTKKPAKKDVKDPQSSGSQANDAKASRSKRRTERDQRRREEHEQRKLVKRDKKKD 116415
Query: 343 DGEQKIRRVMPREDLAVPSAEHQQEQMLSS-----KKNLTPCKYQQ----SASKAYQRSV 393
DG+ K + ++D PS+ Q + S KK P + S S A + S
Sbjct: 116414 DGQGK-QDKQDKQDKGKPSSGKQNKNSKSMDIVILKKANKPESNESLDVPSTSNAAEASK 116238
Query: 394 HKKQTKQT 401
K T+ T
Sbjct: 116237 EKPATENT 116214
>ref|NM_004882.1| Homo sapiens CBF1 interacting corepressor (CIR), mRNA
Length = 1353
Score = 40.4 bits (93), Expect = 0.78
Identities = 46/188 (24%), Positives = 83/188 (43%), Gaps = 10/188 (5%)
Frame = +1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
RK +K QK S KS SS ++ + ++ SE K ++QR ++ ++
Sbjct: 718 RKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETS-ESSSESESNNKEKKIQRKKRKKNK 894
Query: 283 -SHPVSSDSEGKVLKSKMQ-----SSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSG 336
S +SDSE K K + SSTH + K + + + + +ES E S
Sbjct: 895 CSGHNNSDSEEKDKSKKRKLHEELSSTHHNREK------AKEKPRFLKHESSREDSKWSH 1056
Query: 337 LDSETSDGEQK---IRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKY-QQSASKAYQRS 392
DS+ K +R R++ + S H +E+ ++ +P Y Q+ K QR+
Sbjct: 1057SDSDKKSRTHKHSPEKRGSERKEGS--SRSHGREERSRRSRSRSPGSYKQRETRKRAQRN 1230
Query: 393 VHKKQTKQ 400
++Q+++
Sbjct: 1231PGEEQSRR 1254
>gb|AF098297.1|AF098297 Homo sapiens CBF1 interacting corepressor CIR mRNA, complete cds
Length = 1353
Score = 40.4 bits (93), Expect = 0.78
Identities = 46/188 (24%), Positives = 83/188 (43%), Gaps = 10/188 (5%)
Frame = +1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
RK +K QK S KS SS ++ + ++ SE K ++QR ++ ++
Sbjct: 718 RKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETS-ESSSESESNNKEKKIQRKKRKKNK 894
Query: 283 -SHPVSSDSEGKVLKSKMQ-----SSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSG 336
S +SDSE K K + SSTH + K + + + + +ES E S
Sbjct: 895 CSGHNNSDSEEKDKSKKRKLHEELSSTHHNREK------AKEKPRFLKHESSREDSKWSH 1056
Query: 337 LDSETSDGEQK---IRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKY-QQSASKAYQRS 392
DS+ K +R R++ + S H +E+ ++ +P Y Q+ K QR+
Sbjct: 1057SDSDKKSRTHKHSPEKRGSERKEGS--SRSHGREERSRRSRSRSPGSYKQRETRKRAQRN 1230
Query: 393 VHKKQTKQ 400
++Q+++
Sbjct: 1231PGEEQSRR 1254
>gb|AC005267.1|AC005267 Drosophila melanogaster DNA sequence (P1s DS03050 (D194) and DS06185
(D246)), complete sequence
Length = 98645
Score = 40.4 bits (93), Expect = 0.78
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 12/188 (6%)
Frame = -1
Query: 226 RKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHP 285
R++++ + P+L+ ++ KEK ++ + + + EQK + Q D + E+
Sbjct: 47594 RRTEEKVKSTPLLQYLANKKEKRREEARRRNEEKRKQREEQKLLRLAAQSDASKLKEAEG 47415
Query: 286 VSSDSE-GKVLKSKMQSSTHAGKSKKDALKGSSKHR--KKMSYESEAEQLMLSGLDSETS 342
+ K K ++ +G DA SK R + E EQ L D +
Sbjct: 47414 GGGGGDTKKPAKKDVKDPQSSGSQANDAKASRSKRRTERDQRRREEHEQRKLVKRDKKKD 47235
Query: 343 DGEQKIRRVMPREDLAVPSAEHQQEQMLSS-----KKNLTPCKYQQ----SASKAYQRSV 393
DG+ K + ++D PS+ Q + S KK P + S S A + S
Sbjct: 47234 DGQGK-QDKQDKQDKGKPSSGKQNKNSKSMDIVILKKANKPESNESLDVPSTSNAAEASK 47058
Query: 394 HKKQTKQT 401
K T+ T
Sbjct: 47057 EKPATENT 47034
>gb|AC002330.1|AC002330 Arabidopsis thaliana BAC T10P11 from chromosome IV, near 15 cM,
complete sequence
Length = 113566
Score = 40.0 bits (92), Expect = 1.0
Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 19/218 (8%)
Frame = +1
Query: 187 SSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNR---KSQKDGSAAPVLKSQSS 243
++PSP +D N + + + + + D++G + RK + +S+ DG + KS+SS
Sbjct: 5464 NTPSPPRDQNEDSDENADEIQDKNGGERDDNSKGKERKGKSDSESESDGLRSRKRKSKSS 5643
Query: 244 DKEKT------ADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESH----------PVS 287
++ +D + + +E ++ + +R R+S S S
Sbjct: 5644 RSKRRRKRSYDSDSESEGSESDSEEEDRRRRRKSSSKRKKSRSSRSFRKKRSHRRKTKYS 5823
Query: 288 SDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQK 347
E SK + S + ++D K SK RKK S S SDG ++
Sbjct: 5824 DSDESSDEDSKAEISASSSGEEEDT-KSKSKRRKKSSDSSSKRSKGEKTKSGSDSDGTEE 6000
Query: 348 IRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSA 385
++ E + E +E+ L K + K + SA
Sbjct: 6001 DSKMQVDETVKNTELELDEEE-LKKFKEMIELKKKSSA 6111
>ref|NM_116506.1| Arabidopsis thaliana chromosome 4 CHR4v12152001 genomic sequence
Length = 1263
Score = 40.0 bits (92), Expect = 1.0
Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 19/218 (8%)
Frame = +1
Query: 187 SSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNR---KSQKDGSAAPVLKSQSS 243
++PSP +D N + + + + + D++G + RK + +S+ DG + KS+SS
Sbjct: 178 NTPSPPRDQNEDSDENADEIQDKNGGERDDNSKGKERKGKSDSESESDGLRSRKRKSKSS 357
Query: 244 DKEKT------ADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESH----------PVS 287
++ +D + + +E ++ + +R R+S S S
Sbjct: 358 RSKRRRKRSYDSDSESEGSESDSEEEDRRRRRKSSSKRKKSRSSRSFRKKRSHRRKTKYS 537
Query: 288 SDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQK 347
E SK + S + ++D K SK RKK S S SDG ++
Sbjct: 538 DSDESSDEDSKAEISASSSGEEEDT-KSKSKRRKKSSDSSSKRSKGEKTKSGSDSDGTEE 714
Query: 348 IRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSA 385
++ E + E +E+ L K + K + SA
Sbjct: 715 DSKMQVDETVKNTELELDEEE-LKKFKEMIELKKKSSA 825
>emb|X88927.1|XLNOPP180 X.laevis mRNA for xNopp180
Length = 3432
Score = 40.0 bits (92), Expect = 1.0
Identities = 120/618 (19%), Positives = 202/618 (32%), Gaps = 40/618 (6%)
Frame = +1
Query: 24 INIQPGQNVLKYIQDCFECDDTDVTINSPNATSSSTPLVRNQERTSTQSPRPDAGLTI-- 81
I + P Q V+K + T +S ++ S +P + T T +P
Sbjct: 625 IKVPPKQAVVK----AGLASNNGKTADSSSSEDSDSPPAKKTAATKTPPTKPATAAKPQA 792
Query: 82 --VVGNRTCHSTVSLPATPAE--TVRSKGEPCVFCPEPGRNSRIADSIKTDSPVHRGETQ 137
G ++ S ++ E T +SK +P V+ P S ++ P + + +
Sbjct: 793 KKTAGKKSSSREDSSDSSDEEQKTAKSKPKPDVYSAVPPPTS-VSKKKTLSQPGTKAKPE 969
Query: 138 VLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSSPSPV-KDHN 196
D E PAK + + AK A S+P P+ K
Sbjct: 970 SSDSSDSSDEEEQPAKKAK-------------IVPAKA---------AASAPKPLAKKAE 1083
Query: 197 VEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNM 256
+S+ + ++ S K K + D + PV ++ K+A K +
Sbjct: 1084 TSTDSESDSSSEDEKKSSVKLGVKAAPKKAPAAPDAKSTPVAAAK-----KSAPAKKASS 1248
Query: 257 NVQAEVHSEQKTKNVRVQRDLKRTSESHPVS-SDSEGKVLKSKMQSSTHAGKSKKDALKG 315
+ ++ S ++T + S + P S + + GK + SK A G
Sbjct: 1249 SSDSDSSSNEETTTKPAAKTTPAKSAATPTSKTPTNGKATPT----------SKTPAKPG 1398
Query: 316 SSKHR--KKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSK 373
+ K KK S S++ S D ET+ + + P + A P+++ +
Sbjct: 1399 TPKTSTAKKDSSSSDSSD---SSSDEETTT--KPAAKTTPAKSAATPTSKTPTNSKATPT 1563
Query: 374 KNLTPCK----------YQQSASKAYQRSVHKKQTKQTLANDTVXXXXXXXXXXXXXXXX 423
TP K S+S + S +K+T A T
Sbjct: 1564 SKKTPAKPGTPKTSAAKKDSSSSDSSDSSSDEKKTPAKRAAKTTPAKPAAKTTPAKPAAK 1743
Query: 424 XXNPEP-------------RRWKSSDXXXXXXXXXXXXXXXXXMFTSPPHQELQTSVLQK 470
+P + SSD + T+P + V K
Sbjct: 1744 TTPAKPAAKSTPGKQVPTKKESSSSDSSDSSSEDEKKSSAKPAVKTTPGKATSKPVVASK 1923
Query: 471 LAKSEKAEKVLHALESVTDVNNKT-PLKAVELLQHLVDSMKNSEKKRSSVTSSGKMLKKV 529
++KA + S + T PL + + K SS S + K
Sbjct: 1924 PVPAKKASSSSDSDSSEEETTKTTKPLTKLSPAVKTLPPKKAESSSDSSSDSDSEKKTKP 2103
Query: 530 HHRAHKRACSITRDSEPQNT------TDSDSSSAPEVASKKPKSNRHQRLQHSPAAEKAM 583
K A + + QN +DSDSSS E SK+P SPAA+
Sbjct: 2104 AKPPAKSATPVNTKAPAQNKASKASCSDSDSSSEEEGKSKQPTGK-------SPAAKATA 2262
Query: 584 GPESGLVLEHSEKYTSPS 601
P+ V + +K +S S
Sbjct: 2263 PPKKNPVAVNKDKPSSSS 2316
Score = 37.4 bits (85), Expect = 6.6
Identities = 82/412 (19%), Positives = 136/412 (32%), Gaps = 29/412 (7%)
Frame = +1
Query: 220 SIPRKNRKSQKDGSAAPVLK--SQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDL 277
S+ +K SQ A P S SSD+E+ KK K + +A + K + + +
Sbjct: 916 SVSKKKTLSQPGTKAKPESSDSSDSSDEEEQPAKKAKIVPAKAAASAP---KPLAKKAET 1086
Query: 278 KRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGL 337
SES S D + +K ++++ + DA KK + +A S
Sbjct: 1087 STDSESDSSSEDEKKSSVKLGVKAAPKKAPAAPDAKSTPVAAAKKSAPAKKAS----SSS 1254
Query: 338 DSETSDGEQ----KIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCK------------- 380
DS++S E+ + P + A P+++ ++ + TP K
Sbjct: 1255 DSDSSSNEETTTKPAAKTTPAKSAATPTSKTPTNGK-ATPTSKTPAKPGTPKTSTAKKDS 1431
Query: 381 --YQQSASKAYQRSVHKKQTKQTLANDTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXX 438
S S + + + K K T A P +
Sbjct: 1432 SSSDSSDSSSDEETTTKPAAKTTPAKSAATPTSKTPTNSKATPTSKKTPAKPGTPKTSAA 1611
Query: 439 XXXXXXXXXXXXXXXMFTSPPHQELQTSVLQKLAK---SEKAEKVLHALESVTDVNNK-T 494
+P + +T+ + AK ++ A K A + K
Sbjct: 1612 KKDSSSSDSSDSSSDEKKTPAKRAAKTTPAKPAAKTTPAKPAAKTTPAKPAAKSTPGKQV 1791
Query: 495 PLKAVELLQHLVDSMKNSEKKRSS----VTSSGKMLKKVHHRAHKRACSITRDSEPQNTT 550
P K DS EKK S+ T+ GK K A + +++
Sbjct: 1792 PTKKESSSSDSSDSSSEDEKKSSAKPAVKTTPGKATSK-----PVVASKPVPAKKASSSS 1956
Query: 551 DSDSSSAPEVASKKPKSNRHQRLQHSPAAEKAMGPESGLVLEHSEKYTSPSK 602
DSDSS + KP + ++ P +KA SEK T P+K
Sbjct: 1957 DSDSSEEETTKTTKPLTKLSPAVKTLP-PKKAESSSDSSSDSDSEKKTKPAK 2109
>gb|AC004044.1|AC004044 Arabidopsis thaliana BAC T5J8 from chromosome IV, top arm, complete
sequence
Length = 98527
Score = 40.0 bits (92), Expect = 1.0
Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 19/218 (8%)
Frame = -3
Query: 187 SSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNR---KSQKDGSAAPVLKSQSS 243
++PSP +D N + + + + + D++G + RK + +S+ DG + KS+SS
Sbjct: 2720 NTPSPPRDQNEDSDENADEIQDKNGGERDDNSKGKERKGKSDSESESDGLRSRKRKSKSS 2541
Query: 244 DKEKT------ADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESH----------PVS 287
++ +D + + +E ++ + +R R+S S S
Sbjct: 2540 RSKRRRKRSYDSDSESEGSESDSEEEDRRRRRKSSSKRKKSRSSRSFRKKRSHRRKTKYS 2361
Query: 288 SDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQK 347
E SK + S + ++D K SK RKK S S SDG ++
Sbjct: 2360 DSDESSDEDSKAEISASSSGEEEDT-KSKSKRRKKSSDSSSKRSKGEKTKSGSDSDGTEE 2184
Query: 348 IRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSA 385
++ E + E +E+ L K + K + SA
Sbjct: 2183 DSKMQVDETVKNTELELDEEE-LKKFKEMIELKKKSSA 2073
>dbj|D64059.1|D64059 Rattus norvegicus mRNA for helicase II, partial cds
Length = 1582
Score = 40.0 bits (92), Expect = 1.0
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Frame = +1
Query: 216 KSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQR 275
K FS+P K+ + + S++ +S + + DK+ K ++++ S K R +
Sbjct: 574 KKQFSLPAKSSGKRPECSSSDTERSVKGECCDSTDKRVKRIDLRERRSSNSK----RSTK 741
Query: 276 DLKRTSESHPVSSDSEGKVLKSKMQSS-----THAGKSKKDALKGSSKHRKKMSYESEAE 330
++K S S SE + K + S ++ + K+ +L+ ++ RK+ S +
Sbjct: 742 EVKSGSSSSDAEGSSEDAKKQKKQRMSAKKKNSNTKERKRKSLRATTTKRKQADITSSSS 921
Query: 331 QLMLSGLDS--ETSDGEQKIRRVMPREDLAVPS 361
+ +S E S EQKI+ V E+L +PS
Sbjct: 922 DIGDDDQNSAGEESSDEQKIKPV--TENLVLPS 1014
>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7
Length = 199615
Score = 40.0 bits (92), Expect = 1.0
Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 19/218 (8%)
Frame = -3
Query: 187 SSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNR---KSQKDGSAAPVLKSQSS 243
++PSP +D N + + + + + D++G + RK + +S+ DG + KS+SS
Sbjct: 51389 NTPSPPRDQNEDSDENADEIQDKNGGERDDNSKGKERKGKSDSESESDGLRSRKRKSKSS 51210
Query: 244 DKEKT------ADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESH----------PVS 287
++ +D + + +E ++ + +R R+S S S
Sbjct: 51209 RSKRRRKRSYDSDSESEGSESDSEEEDRRRRRKSSSKRKKSRSSRSFRKKRSHRRKTKYS 51030
Query: 288 SDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQK 347
E SK + S + ++D K SK RKK S S SDG ++
Sbjct: 51029 DSDESSDEDSKAEISASSSGEEEDT-KSKSKRRKKSSDSSSKRSKGEKTKSGSDSDGTEE 50853
Query: 348 IRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSA 385
++ E + E +E+ L K + K + SA
Sbjct: 50852 DSKMQVDETVKNTELELDEEE-LKKFKEMIELKKKSSA 50742
>emb|Z49888.1|CEF47A4 Caenorhabditis elegans cosmid F47A4, complete sequence
Length = 37680
Score = 39.7 bits (91), Expect = 1.3
Identities = 45/201 (22%), Positives = 77/201 (37%), Gaps = 7/201 (3%)
Frame = -3
Query: 170 VEEAKTPVQTRTVSIAP-----SSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRK 224
V + P T TV+ P SSPS +V+ E++CE DES K
Sbjct: 16960 VLDFSNPTPTETVNTQPQIDFESSPSASPALSVDKENECEKKEDES-------------K 16820
Query: 225 NRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEV-HSEQKTKNVRVQRDLK-RTSE 282
++ KD K + +KEK+ D+ +++V +E N + K + E
Sbjct: 16819 TKEKNKD-------KEKDKEKEKSVDEHTNDLDVPINPDDAEMADANDKTDASEKQKLVE 16661
Query: 283 SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETS 342
P ++E ++ST A KS+ ++ S+ K S S D+
Sbjct: 16660 EEPTGKENEDDTSSKTAKTSTSAEKSEAPSIVDSNDKIDKEPNASSTSNDETSKDDTVPM 16481
Query: 343 DGEQKIRRVMPREDLAVPSAE 363
+ + P+E + + E
Sbjct: 16480 ESDPPAATEKPKESTEITTEE 16418
>ref|NM_077244.1| Caenorhabditis elegans
Length = 10497
Score = 39.7 bits (91), Expect = 1.3
Identities = 45/201 (22%), Positives = 77/201 (37%), Gaps = 7/201 (3%)
Frame = +1
Query: 170 VEEAKTPVQTRTVSIAP-----SSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRK 224
V + P T TV+ P SSPS +V+ E++CE DES K
Sbjct: 1522 VLDFSNPTPTETVNTQPQIDFESSPSASPALSVDKENECEKKEDES-------------K 1662
Query: 225 NRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEV-HSEQKTKNVRVQRDLK-RTSE 282
++ KD K + +KEK+ D+ +++V +E N + K + E
Sbjct: 1663 TKEKNKD-------KEKDKEKEKSVDEHTNDLDVPINPDDAEMADANDKTDASEKQKLVE 1821
Query: 283 SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETS 342
P ++E ++ST A KS+ ++ S+ K S S D+
Sbjct: 1822 EEPTGKENEDDTSSKTAKTSTSAEKSEAPSIVDSNDKIDKEPNASSTSNDETSKDDTVPM 2001
Query: 343 DGEQKIRRVMPREDLAVPSAE 363
+ + P+E + + E
Sbjct: 2002 ESDPPAATEKPKESTEITTEE 2064
>emb|AL442115.1|H0711G06 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06
(+H0113C06), complete sequence
Length = 148608
Score = 39.7 bits (91), Expect = 1.3
Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 24/256 (9%)
Frame = +1
Query: 152 AKLSDPEDDPGVVGSPLLVEEAKTPVQTRTVSIA-----------PSSPSPVKDHNVEIE 200
+KL + PG G+P P T T +++ PS PS D E+
Sbjct: 2533 SKLEQDANCPGKDGTP--------PNNTSTSAVSNGCALIDRVKSPSGPSS-SDKKAELP 2685
Query: 201 SDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTAD---KKGKNMN 257
SD D +S A + + +++ EK +D KK ++
Sbjct: 2686 SDDNQAKDTDDLIS------------------GAKEIPEPITTEPEKPSDHNLKKSHKLD 2811
Query: 258 VQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVL----------KSKMQSSTHAGK 307
+ +K V D+ + E P + D + K+ KSK +T AGK
Sbjct: 2812 TSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKSKHVDNTPAGK 2991
Query: 308 SKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQE 367
K+ S H KK + + L D+ + G + RR+ +D+ S + E
Sbjct: 2992 GKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIK-SSFKKTGE 3168
Query: 368 QMLSSKKNLTPCKYQQ 383
S KK K Q+
Sbjct: 3169 GESSKKKQKENLKQQE 3216
>gb|AE003444.1|AE003444 Drosophila melanogaster genomic scaffold 142000013386054 section 28 of
35, complete sequence
Length = 300710
Score = 39.3 bits (90), Expect = 1.7
Identities = 48/222 (21%), Positives = 85/222 (37%), Gaps = 3/222 (1%)
Frame = -3
Query: 113 PEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEE 172
PE NS + + K DS TQV + + E LS E +
Sbjct: 189159 PEDASNSHKSVTAKKDSKKDEASTQVKSDNESPEAAEISMILSTSEANSS---------S 189007
Query: 173 AKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDG 232
++ + T + A PS K+ + +S E G + RK + +K+
Sbjct: 189006 SEHEMDADTDTAATDRPSAQKETRLNRKSLPEVTGAPKGLTPKQQRLMEQRKKAREEKEQ 188827
Query: 233 SAAPVLKSQSSDKEKTADKKGKNMNV---QAEVHSEQKTKNVRVQRDLKRTSESHPVSSD 289
A + + DKE +K + + Q ++ +QK + +++++ K V S
Sbjct: 188826 KLAEERRLKQQDKEHREQQKKQERDEKEQQRKLERDQKEQQRKMEKEEKERKRQAEVDSK 188647
Query: 290 SEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQ 331
+E K +++ + + KKD + RKK EAEQ
Sbjct: 188646 NEEKRKRNEAKEEV---QRKKD-----EERRKKEQEREEAEQ 188545
>gb|AC010007.3| Drosophila melanogaster 3L BAC RP98-17K17 (Roswell Park Cancer
Institute Drosophila BAC Library) complete sequence
Length = 175475
Score = 39.3 bits (90), Expect = 1.7
Identities = 44/192 (22%), Positives = 75/192 (38%)
Frame = +2
Query: 155 SDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLS 214
SD E++PG G ++ K P + S+ +K + E S E ES
Sbjct: 91745 SDSEEEPGASGKSGK-KKGKKPKPVKESKEKLSAKQRLKVLSKETISTSE---SESDGKR 91912
Query: 215 FKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQ 274
KS +NR + GSA+ SD+E + + + S++ TK R +
Sbjct: 91913 SKSRSRSRSRNRSGSRSGSAS----RSGSDREASRKRSRSRSGSGSGSDSDEATKRKRAR 92080
Query: 275 RDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLML 334
++ ES S + K S+ +S + +G + K S+ R + S +
Sbjct: 92081 NRIESGGESDRSGSRARSK-SSSRSRSRSKSGSRSRSRSKSGSRSRSRSKSGSRSRSRSP 92257
Query: 335 SGLDSETSDGEQ 346
SG S + G +
Sbjct: 92258 SGSRSRSRSGSR 92293
>gb|AY061610.1| Drosophila melanogaster SD07532 full length cDNA
Length = 2641
Score = 39.3 bits (90), Expect = 1.7
Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Frame = +2
Query: 206 LIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEK-TADKKGKNMNVQAEVHS 264
L D S KS + K KS K + K + D++K ++ + + + ++ S
Sbjct: 1088 LDDSSSAAEVKSGEDVDNKKHKSSKSDKSKRSEKEREKDRKKESSSHRSSSSSHKSSSSS 1267
Query: 265 EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMS 324
+ + +S SH SSD K K +SS+ + S KD + S +
Sbjct: 1268 SSSSSKSSSSKSSSSSSSSHRSSSDKYRD--KDKARSSSGSSSSSKDRERSSGSSSSSSN 1441
Query: 325 YESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSK 373
++ S S +S G + + S+ +Q++ +K
Sbjct: 1442 KHKSSKSSSSSSSSSSSSSGSSSSKDRKSSSSTSSSSSSSRQDKDKDNK 1588
>gb|AE003471.2|AE003471 Drosophila melanogaster genomic scaffold 142000013386045 section 5 of
17, complete sequence
Length = 300412
Score = 39.3 bits (90), Expect = 1.7
Identities = 44/192 (22%), Positives = 75/192 (38%)
Frame = +2
Query: 155 SDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLS 214
SD E++PG G ++ K P + S+ +K + E S E ES
Sbjct: 77495 SDSEEEPGASGKSGK-KKGKKPKPVKESKEKLSAKQRLKVLSKETISTSE---SESDGKR 77662
Query: 215 FKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQ 274
KS +NR + GSA+ SD+E + + + S++ TK R +
Sbjct: 77663 SKSRSRSRSRNRSGSRSGSAS----RSGSDREASRKRSRSRSGSGSGSDSDEATKRKRAR 77830
Query: 275 RDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLML 334
++ ES S + K S+ +S + +G + K S+ R + S +
Sbjct: 77831 NRIESGGESDRSGSRARSK-SSSRSRSRSKSGSRSRSRSKSGSRSRSRSKSGSRSRSRSP 78007
Query: 335 SGLDSETSDGEQ 346
SG S + G +
Sbjct: 78008 SGSRSRSRSGSR 78043
>gb|AY038694.1| Enterococcus faecalis SalB antigen gene, complete cds
Length = 1350
Score = 39.3 bits (90), Expect = 1.7
Identities = 39/170 (22%), Positives = 67/170 (38%)
Frame = +1
Query: 237 VLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLK 296
+++ Q DK+ DKK +N E+K K + T +S SE V+K
Sbjct: 448 LMQQQKEDKQAVVDKKAEN---------EKKVKQLEATEAELETKRQDLLSKQSELNVMK 600
Query: 297 SKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRRVMPRED 356
+ + + +S K L +K +EAEQ L+ EQK ++
Sbjct: 601 ASLALEQSSAESSKAGL-------EKQKAAAEAEQARLA--------AEQKAAAEKAKQA 735
Query: 357 LAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLANDT 406
A P+ + + + + T + S+S A + S +QT +T T
Sbjct: 736 AAKPAKAEVKAEAPVASSSTTEAQAPASSSSATESST--QQTTETTTPST 879
>gb|AC004546.1|AC004546 Drosophila melanogaster DNA sequence (P1s DS02684 (D134) and DS00269
(D131)), complete sequence
Length = 102389
Score = 39.3 bits (90), Expect = 1.7
Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Frame = -3
Query: 206 LIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEK-TADKKGKNMNVQAEVHS 264
L D S KS + K KS K + K + D++K ++ + + + ++ S
Sbjct: 45060 LDDSSSAAEVKSGEDVDNKKHKSSKSDKSKRSEKEREKDRKKESSSHRSSSSSHKSSSSS 44881
Query: 265 EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMS 324
+ + +S SH SSD K K +SS+ + S KD + S +
Sbjct: 44880 SSSSSKSSSSKSSSSSSSSHRSSSDKYRD--KDKARSSSGSSSSSKDRERSSGSSSSSSN 44707
Query: 325 YESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSK 373
++ S S +S G + + S+ +Q++ +K
Sbjct: 44706 KHKSSKSSSSSSSSSSSSSGSSSSKDRKSSSSTSSSSSSSRQDKDKDNK 44560
>dbj|AP002057.1|AP002057 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T19N8
Length = 73391
Score = 39.3 bits (90), Expect = 1.7
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 8/171 (4%)
Frame = +1
Query: 239 KSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRV-QRDLKRTSESHPVSSDSEGKVLKS 297
KS++ ++ K KK ++ + + E+K+K + RDLK + E + KS
Sbjct: 19642 KSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKS 19821
Query: 298 -----KMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSD--GEQKIRR 350
K + + K++ K KH + S + E ++ + L+ + S+ E K +
Sbjct: 19822 KKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEK 20001
Query: 351 VMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQT 401
+ V ++E+ + +K+ T + +SK+ + V KK+ K +
Sbjct: 20002 KKSQHVKLVKKESDKKEKKENEEKSETK---EIESSKSQKNEVDKKEKKSS 20145
Score = 38.5 bits (88), Expect = 2.9
Identities = 34/181 (18%), Positives = 78/181 (42%), Gaps = 4/181 (2%)
Frame = +1
Query: 229 QKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSS 288
+ DGS+ + + ++K+ DKK +N Q + ++ + + + + S
Sbjct: 18646 KNDGSSEKGEEGKENNKDSMEDKKLENKESQTDSKDDKSVDDKQEEAQIYGGESKDDKSV 18825
Query: 289 DSEGKVLKSKMQSSTHAG----KSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDG 344
+++GK +SK T ++K++ ++G+ K +K+ + E + ET D
Sbjct: 18826 EAKGKKKESKENKKTKTNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSV--ETKD- 18996
Query: 345 EQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLAN 404
+K+ R++ S E +E SK + +++ + +V K+ + L +
Sbjct: 18997 NKKLSSTENRDEAKERSGEDNKEDKEESKDYQSVEAKEKNENGGVDTNVGNKEDSKDLKD 19176
Query: 405 D 405
D
Sbjct: 19177 D 19179
Score = 38.1 bits (87), Expect = 3.8
Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 7/185 (3%)
Frame = +1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEK--TADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRT 280
RK++K +++ K + KEK + + K K + E + K +++ K+
Sbjct: 19723 RKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKH 19902
Query: 281 SESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSE 340
ES + + K ++ +++ K K+ K S+H K + ES+ ++ + SE
Sbjct: 19903 EESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKK-KSQHVKLVKKESDKKEKKENEEKSE 20079
Query: 341 TSDGEQKIRRVMPREDLAVPSAEHQQ-----EQMLSSKKNLTPCKYQQSASKAYQRSVHK 395
T + E + + S++ QQ E S +K L + + + + + +
Sbjct: 20080 TKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQ 20259
Query: 396 KQTKQ 400
K+TK+
Sbjct: 20260 KETKK 20274
>gb|AY069525.1| Drosophila melanogaster LD24034 full length cDNA
Length = 3684
Score = 39.3 bits (90), Expect = 1.7
Identities = 44/192 (22%), Positives = 75/192 (38%)
Frame = +2
Query: 155 SDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLS 214
SD E++PG G ++ K P + S+ +K + E S E ES
Sbjct: 2975 SDSEEEPGASGKSGK-KKGKKPKPVKESKEKLSAKQRLKVLSKETISTSE---SESDGKR 3142
Query: 215 FKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQ 274
KS +NR + GSA+ SD+E + + + S++ TK R +
Sbjct: 3143 SKSRSRSRSRNRSGSRSGSAS----RSGSDREASRKRSRSRSGSGSGSDSDEATKRKRAR 3310
Query: 275 RDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLML 334
++ ES S + K S+ +S + +G + K S+ R + S +
Sbjct: 3311 NRIESGGESDRSGSRARSK-SSSRSRSRSKSGSRSRSRSKSGSRSRSRSKSGSRSRSRSP 3487
Query: 335 SGLDSETSDGEQ 346
SG S + G +
Sbjct: 3488 SGSRSRSRSGSR 3523
>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230),
DS03404 (D231), DS06962 (D232), and DS07291 (D240)),
complete sequence
Length = 268369
Score = 39.3 bits (90), Expect = 1.7
Identities = 44/192 (22%), Positives = 75/192 (38%)
Frame = -2
Query: 155 SDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLS 214
SD E++PG G ++ K P + S+ +K + E S E ES
Sbjct: 133920 SDSEEEPGASGKSGK-KKGKKPKPVKESKEKLSAKQRLKVLSKETISTSE---SESDGKR 133753
Query: 215 FKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQ 274
KS +NR + GSA+ SD+E + + + S++ TK R +
Sbjct: 133752 SKSRSRSRSRNRSGSRSGSAS----RSGSDREASRKRSRSRSGSGSGSDSDEATKRKRAR 133585
Query: 275 RDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLML 334
++ ES S + K S+ +S + +G + K S+ R + S +
Sbjct: 133584 NRIESGGESDRSGSRARSK-SSSRSRSRSKSGSRSRSRSKSGSRSRSRSKSGSRSRSRSP 133408
Query: 335 SGLDSETSDGEQ 346
SG S + G +
Sbjct: 133407 SGSRSRSRSGSR 133372
>ref|NG_000592.1| Drosophila melanogaster dribble (dbe) on chromosome 2
Length = 11580
Score = 39.3 bits (90), Expect = 1.7
Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Frame = -2
Query: 206 LIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEK-TADKKGKNMNVQAEVHS 264
L D S KS + K KS K + K + D++K ++ + + + ++ S
Sbjct: 2297 LDDSSSAAEVKSGEDVDNKKHKSSKSDKSKRSEKEREKDRKKESSSHRSSSSSHKSSSSS 2118
Query: 265 EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMS 324
+ + +S SH SSD K K +SS+ + S KD + S +
Sbjct: 2117 SSSSSKSSSSKSSSSSSSSHRSSSDKYRD--KDKARSSSGSSSSSKDRERSSGSSSSSSN 1944
Query: 325 YESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSK 373
++ S S +S G + + S+ +Q++ +K
Sbjct: 1943 KHKSSKSSSSSSSSSSSSSGSSSSKDRKSSSSTSSSSSSSRQDKDKDNK 1797
>ref|NG_000099.1| Drosophila melanogaster neither inactivation nor afterpotential A
(ninaA) on chromosome 2
Length = 11500
Score = 39.3 bits (90), Expect = 1.7
Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Frame = +2
Query: 206 LIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEK-TADKKGKNMNVQAEVHS 264
L D S KS + K KS K + K + D++K ++ + + + ++ S
Sbjct: 440 LDDSSSAAEVKSGEDVDNKKHKSSKSDKSKRSEKEREKDRKKESSSHRSSSSSHKSSSSS 619
Query: 265 EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMS 324
+ + +S SH SSD K K +SS+ + S KD + S +
Sbjct: 620 SSSSSKSSSSKSSSSSSSSHRSSSDKYRD--KDKARSSSGSSSSSKDRERSSGSSSSSSN 793
Query: 325 YESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSK 373
++ S S +S G + + S+ +Q++ +K
Sbjct: 794 KHKSSKSSSSSSSSSSSSSGSSSSKDRKSSSSTSSSSSSSRQDKDKDNK 940
>gb|AE003588.2|AE003588 Drosophila melanogaster genomic scaffold 142000013386046 section 3 of 16,
complete sequence
Length = 299378
Score = 39.3 bits (90), Expect = 1.7
Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Frame = +2
Query: 206 LIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEK-TADKKGKNMNVQAEVHS 264
L D S KS + K KS K + K + D++K ++ + + + ++ S
Sbjct: 251690 LDDSSSAAEVKSGEDVDNKKHKSSKSDKSKRSEKEREKDRKKESSSHRSSSSSHKSSSSS 251869
Query: 265 EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMS 324
+ + +S SH SSD K K +SS+ + S KD + S +
Sbjct: 251870 SSSSSKSSSSKSSSSSSSSHRSSSDKYRD--KDKARSSSGSSSSSKDRERSSGSSSSSSN 252043
Query: 325 YESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSK 373
++ S S +S G + + S+ +Q++ +K
Sbjct: 252044 KHKSSKSSSSSSSSSSSSSGSSSSKDRKSSSSTSSSSSSSRQDKDKDNK 252190
>ref|NM_113798.1| Arabidopsis thaliana chromosome 3 CHR3v12152001 genomic sequence
Length = 6246
Score = 39.3 bits (90), Expect = 1.7
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 8/171 (4%)
Frame = +1
Query: 239 KSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRV-QRDLKRTSESHPVSSDSEGKVLKS 297
KS++ ++ K KK ++ + + E+K+K + RDLK + E + KS
Sbjct: 3055 KSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKS 3234
Query: 298 -----KMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSD--GEQKIRR 350
K + + K++ K KH + S + E ++ + L+ + S+ E K +
Sbjct: 3235 KKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEK 3414
Query: 351 VMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQT 401
+ V ++E+ + +K+ T + +SK+ + V KK+ K +
Sbjct: 3415 KKSQHVKLVKKESDKKEKKENEEKSETK---EIESSKSQKNEVDKKEKKSS 3558
Score = 38.5 bits (88), Expect = 2.9
Identities = 34/181 (18%), Positives = 78/181 (42%), Gaps = 4/181 (2%)
Frame = +1
Query: 229 QKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSS 288
+ DGS+ + + ++K+ DKK +N Q + ++ + + + + S
Sbjct: 2059 KNDGSSEKGEEGKENNKDSMEDKKLENKESQTDSKDDKSVDDKQEEAQIYGGESKDDKSV 2238
Query: 289 DSEGKVLKSKMQSSTHAG----KSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDG 344
+++GK +SK T ++K++ ++G+ K +K+ + E + ET D
Sbjct: 2239 EAKGKKKESKENKKTKTNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSV--ETKD- 2409
Query: 345 EQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLAN 404
+K+ R++ S E +E SK + +++ + +V K+ + L +
Sbjct: 2410 NKKLSSTENRDEAKERSGEDNKEDKEESKDYQSVEAKEKNENGGVDTNVGNKEDSKDLKD 2589
Query: 405 D 405
D
Sbjct: 2590 D 2592
Score = 38.1 bits (87), Expect = 3.8
Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 7/185 (3%)
Frame = +1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEK--TADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRT 280
RK++K +++ K + KEK + + K K + E + K +++ K+
Sbjct: 3136 RKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKH 3315
Query: 281 SESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSE 340
ES + + K ++ +++ K K+ K S+H K + ES+ ++ + SE
Sbjct: 3316 EESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKK-KSQHVKLVKKESDKKEKKENEEKSE 3492
Query: 341 TSDGEQKIRRVMPREDLAVPSAEHQQ-----EQMLSSKKNLTPCKYQQSASKAYQRSVHK 395
T + E + + S++ QQ E S +K L + + + + + +
Sbjct: 3493 TKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQ 3672
Query: 396 KQTKQ 400
K+TK+
Sbjct: 3673 KETKK 3687
>gb|AC092222.1|AC092222 Drosophila melanogaster, chromosome 2L, region 21D-21E, BAC clone
BACR16I01, complete sequence
Length = 165652
Score = 39.3 bits (90), Expect = 1.7
Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Frame = +2
Query: 206 LIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEK-TADKKGKNMNVQAEVHS 264
L D S KS + K KS K + K + D++K ++ + + + ++ S
Sbjct: 71654 LDDSSSAAEVKSGEDVDNKKHKSSKSDKSKRSEKEREKDRKKESSSHRSSSSSHKSSSSS 71833
Query: 265 EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMS 324
+ + +S SH SSD K K +SS+ + S KD + S +
Sbjct: 71834 SSSSSKSSSSKSSSSSSSSHRSSSDKYRD--KDKARSSSGSSSSSKDRERSSGSSSSSSN 72007
Query: 325 YESEAEQLMLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSK 373
++ S S +S G + + S+ +Q++ +K
Sbjct: 72008 KHKSSKSSSSSSSSSSSSSGSSSSKDRKSSSSTSSSSSSSRQDKDKDNK 72154
>gb|AF312858.1|AF312858 Mus musculus leukemia associated gene protein (Mllt1) mRNA, complete
cds
Length = 1793
Score = 39.3 bits (90), Expect = 1.7
Identities = 45/182 (24%), Positives = 73/182 (39%), Gaps = 13/182 (7%)
Frame = +3
Query: 223 RKNRKSQKDGSA-APVLKSQSS---DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLK 278
+K +KS G+ AP ++S DK+ DK K +AE R+ K
Sbjct: 879 KKPKKSGSKGTRRAPGTSPRASSFPDKKVARDKNSKGDKGKAESEP----------REAK 1028
Query: 279 RTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGS----SKHRKKMSYESEAEQLML 334
RT ++ +S+ E QSS S D+ S S++ + S E L
Sbjct: 1029 RTLQTEDSNSEDEASFRSESAQSSPANASSSSDSSSDSDFEPSQNHSQGPLRSMVEDLQS 1208
Query: 335 SGLD-SETSDGEQKIRRVMP----REDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAY 389
G D ++S GE+ R+ P R + +++ + L ++ L P K +SK
Sbjct: 1209 EGSDEDDSSSGEENTRKANPGRESRLSFSDSESDNSADSCLPGREPLPPQKPLPPSSKVS 1388
Query: 390 QR 391
R
Sbjct: 1389 GR 1394
>ref|NM_025937.1| Mus musculus RIKEN cDNA 2610020O08 gene (2610020O08Rik), mRNA
Length = 1749
Score = 39.3 bits (90), Expect = 1.7
Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 2/149 (1%)
Frame = +2
Query: 184 IAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSS 243
++P +P P D + +E DE P+K+ S K +SS
Sbjct: 620 LSPKNPEPDSDEHTPVE-------DEE-----------PKKSTTSASSSEDDKKKKRKSS 745
Query: 244 DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGK--VLKSKMQS 301
+ A KK K + K K+ + D SES SSD + K K+K +
Sbjct: 746 HSKDRAKKKRKKKS--------SKRKHKKYSEDSDSDSESDTDSSDEDSKRRAKKAKKKD 901
Query: 302 STHAGKSKKDALKGSSKHRKKMSYESEAE 330
+ KK K S K+RK+ S S E
Sbjct: 902 KKKKRRGKKYKKKKSKKNRKESSDSSSKE 988
>gb|AF367177.1|AF367177 Drosophila melanogaster chromatin assembly factor-1 p180 subunit
mRNA, complete cds
Length = 3745
Score = 39.3 bits (90), Expect = 1.7
Identities = 48/222 (21%), Positives = 85/222 (37%), Gaps = 3/222 (1%)
Frame = +3
Query: 113 PEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEE 172
PE NS + + K DS TQV + + E LS E +
Sbjct: 1227 PEDASNSHKSVTAKKDSKKDEASTQVKSDNESPEAAEISMILSTSEANSS---------S 1379
Query: 173 AKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDG 232
++ + T + A PS K+ + +S E G + RK + +K+
Sbjct: 1380 SEHEMDADTDTAATDRPSAQKETRLNRKSLPEVTGAPKGLTPKQQRLMEQRKKAREEKEQ 1559
Query: 233 SAAPVLKSQSSDKEKTADKKGKNMNV---QAEVHSEQKTKNVRVQRDLKRTSESHPVSSD 289
A + + DKE +K + + Q ++ +QK + +++++ K V S
Sbjct: 1560 KLAEERRLKQQDKEHREQQKKQERDEKEQQRKLERDQKEQQRKMEKEEKERKRQAEVDSK 1739
Query: 290 SEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQ 331
+E K +++ + + KKD + RKK EAEQ
Sbjct: 1740 NEEKRKRNEAKEEV---QRKKD-----EERRKKEQEREEAEQ 1841
>gb|AC018797.4|AC018797 Homo sapiens BAC clone RP11-10L12 from 4, complete sequence
Length = 190670
Score = 39.3 bits (90), Expect = 1.7
Identities = 40/191 (20%), Positives = 80/191 (40%), Gaps = 27/191 (14%)
Frame = +1
Query: 241 QSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQ 300
+ KE ++KGK Q E++ + + +R+ K+ + K K K +
Sbjct: 5782 EKKGKEGEREEKGKGKARQKRKGKEKRKEERKKERERKKRKKGRKEGRKEGRKEKKKKGR 5961
Query: 301 SSTHAGKSKKDALKGSSKHRKKMSYE-------------SEAEQLMLSGLDSET--SDGE 345
+ +K+ +G K RKK E SE E+L++S S
Sbjct: 5962 KEGRKKRKEKERKEGRKKERKKRKKEREREREKGRKEGNSEPERLIISSKTESAIKSSNR 6141
Query: 346 QKIR------RVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAY------QRSV 393
+K R +++P+ + Q + + L+ +Q+SAS++Y Q+ +
Sbjct: 6142 KKSRTGCLHCQILPKLQRRTNTNSTQTIPKIEEEIILSN-SFQRSASRSYQNHTERQQEI 6318
Query: 394 HKKQTKQTLAN 404
+K++ K+T+A+
Sbjct: 6319 NKRKEKKTIAH 6351
>dbj|AK011492.1|AK011492 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2610020O08:homolog to CDNA:
FLJ22626 FIS, CLONE HSI06109, full insert sequence
Length = 1749
Score = 39.3 bits (90), Expect = 1.7
Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 2/149 (1%)
Frame = +2
Query: 184 IAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSS 243
++P +P P D + +E DE P+K+ S K +SS
Sbjct: 620 LSPKNPEPDSDEHTPVE-------DEE-----------PKKSTTSASSSEDDKKKKRKSS 745
Query: 244 DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGK--VLKSKMQS 301
+ A KK K + K K+ + D SES SSD + K K+K +
Sbjct: 746 HSKDRAKKKRKKKS--------SKRKHKKYSEDSDSDSESDTDSSDEDSKRRAKKAKKKD 901
Query: 302 STHAGKSKKDALKGSSKHRKKMSYESEAE 330
+ KK K S K+RK+ S S E
Sbjct: 902 KKKKRRGKKYKKKKSKKNRKESSDSSSKE 988
>gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, complete sequence
Length = 179513
Score = 38.9 bits (89), Expect = 2.3
Identities = 26/114 (22%), Positives = 53/114 (45%)
Frame = -2
Query: 224 KNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSES 283
+ ++ +K+G K + ++E+ ++KG+ + E E+K + + +++ KR E
Sbjct: 107176 EGKEGRKEGERERKRKKKEKERERKKERKGE----REEKEKERKERKKKREKERKREREK 107009
Query: 284 HPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGL 337
E K K K + K KK+ K K +K+SY + +++GL
Sbjct: 107008 EKRKRKKEKKERKRKKERERE--KEKKEGRKEGRK-EEKVSYNRRVHKTVIAGL 106856
>ref|NM_068344.1| Caenorhabditis elegans
Length = 645
Score = 38.9 bits (89), Expect = 2.3
Identities = 31/124 (25%), Positives = 52/124 (41%)
Frame = +1
Query: 224 KNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSES 283
K + +KDG D++K DKK + + + + + K + ++D K+ E
Sbjct: 295 KKDEEKKDGD-------DKKDEKKDDDKKDEKKSDKKDEKKDDKKEKDEEKKDDKKEDEK 453
Query: 284 HPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSD 343
+ K KSK + S + KSKK K K KK + + ++ D E D
Sbjct: 454 KDDDKKDDKKEAKSKSKKSNKSKKSKKS--KREKKDDKKDEDKKDDDKKDDDKKDDEKKD 627
Query: 344 GEQK 347
E+K
Sbjct: 628 NEKK 639
>gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, complete sequence
Length = 105885
Score = 38.9 bits (89), Expect = 2.3
Identities = 26/114 (22%), Positives = 53/114 (45%)
Frame = -3
Query: 224 KNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSES 283
+ ++ +K+G K + ++E+ ++KG+ + E E+K + + +++ KR E
Sbjct: 3787 EGKEGRKEGERERKRKKKEKERERKKERKGE----REEKEKERKERKKKREKERKREREK 3620
Query: 284 HPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGL 337
E K K K + K KK+ K K +K+SY + +++GL
Sbjct: 3619 EKRKRKKEKKERKRKKERERE--KEKKEGRKEGRK-EEKVSYNRRVHKTVIAGL 3467
>emb|AL009173.1|HS32F7 Homo sapiens DNA sequence from PAC 32F7 on chromosome X. Contains
NUCLEOSOME ASSEMBLY PROTEIN 1-LIKE 3, ESTs
Length = 101167
Score = 38.9 bits (89), Expect = 2.3
Identities = 42/175 (24%), Positives = 68/175 (38%)
Frame = -1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
R+ +K +K S S SSD ++ Q + ++K ++ ++S+
Sbjct: 18631 RERKKKRKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSY-------KSSQ 18473
Query: 283 SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETS 342
S S+SE K K + S + +KD ++ SK RKK S + LS S S
Sbjct: 18472 SSTHESESESKESVKKKKKSKDETEKEKD-VRSLSKKRKK----SYPDDKPLSSESSSES 18308
Query: 343 DGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQ 397
D E+ ++ R E +Q + KK K K S HK +
Sbjct: 18307 DYEEDVQAKKKRR-----CEEREQAKEKVKKKKKKQHKKHSKKKKKKSGSSHKSR 18158
>emb|Z28089.1|SCYKL089W S.cerevisiae chromosome XI reading frame ORF YKL089w
Length = 2073
Score = 38.9 bits (89), Expect = 2.3
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 785 IAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQL 836
I F+VI+G + T+ K + G F +PA N Y I N N+E+ + F Q+
Sbjct: 1610 ITFHVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQV 1765
>emb|Z18294.1|SCMIF2A Saccharomyces cerevisiae of MIF2 gene
Length = 2161
Score = 38.9 bits (89), Expect = 2.3
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 785 IAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHFTQL 836
I F+VI+G + T+ K + G F +PA N Y I N N+E+ + F Q+
Sbjct: 1700 ITFHVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQV 1855
>gb|AF105219.1|AF105219 Thermomonospora curvata putative regulatory protein (aglR),
alpha-1,4-glucosidase (aglA), and putative maltose
binding protein (aglE) genes, complete cds; and
transporter protein (aglF) gene, partial cds
Length = 5521
Score = 38.5 bits (88), Expect = 2.9
Identities = 38/147 (25%), Positives = 52/147 (34%), Gaps = 3/147 (2%)
Frame = +2
Query: 48 TINSPNATSSSTPLVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGE 107
T + P+ S TP ST SP P + +C + P+TPA S
Sbjct: 4853 TRSRPSPRSRPTPWCAPPTPPSTPSPSPPTAPRTPATSSSCSPRPTAPSTPATPTASPPS 5032
Query: 108 PCVFCPE--PGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVG 165
PE PGR+S + + P + SP P PG
Sbjct: 5033 TPTTSPEGLPGRSSTPRGTPCSPPP-----------RSTSAATRSPTSRCPPATGPGSAP 5179
Query: 166 SPL-LVEEAKTPVQTRTVSIAPSSPSP 191
+ +AK P TR +IA +PSP
Sbjct: 5180 AACPWPTKAKPPGPTRRTAIASWTPSP 5260
>gb|AE003686.2|AE003686 Drosophila melanogaster genomic scaffold 142000013386035 section 11 of
105, complete sequence
Length = 221888
Score = 38.5 bits (88), Expect = 2.9
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Frame = +3
Query: 222 PRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTS 281
P + + + K S + +K+Q S K+ D K K +NV E EQ V V + KR +
Sbjct: 82935 PDQTKPATKSQSTSAEVKTQKS--MKSFDDKIKEVNVAIE--KEQSRVEVEVNAEKKRKN 83102
Query: 282 -ESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSE 340
E P + + + + + + S H GK+++ A + S + YE+ ++ SE
Sbjct: 83103 VEEAPKNKEGDSQ----QPEESQHKGKNQRRASEPPSTEDLEKRYETLKRRMSSKNQFSE 83270
Query: 341 TSDG-----EQKIRRVMPREDLAVPSAEHQQ---EQMLSSKKNL 376
T D +Q++ E PS E + E + KKN+
Sbjct: 83271 TVDEALERIQQEVISEAVEEKKPPPSTEDLESRFEALHGDKKNV 83402
>dbj|AP000539.1|AP000539 Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
clone:c72E11
Length = 42207
Score = 38.5 bits (88), Expect = 2.9
Identities = 40/143 (27%), Positives = 61/143 (41%), Gaps = 1/143 (0%)
Frame = -3
Query: 460 HQELQTSVLQKLAKSEKAEKVLHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSV 519
H E +SVL+ + + E+ LES P V L+ V K S+ RS +
Sbjct: 38563 HSEHSSSVLESYVRDKHPERSSSVLESYVRDKYSEPSHCV--LESYV-RQKYSDTHRSVL 38393
Query: 520 TSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKSNRHQRLQHSPAA 579
SSGK H +S ++T SSS E ++ S+ H+R+ S
Sbjct: 38392 ESSGK-------DKHSETSRDALESFERDT*TEHSSSVLETFLREKHSDSHRRVLQSYLR 38234
Query: 580 EKAMGPESGLVLEH-SEKYTSPS 601
+K P S ++ H EK++ PS
Sbjct: 38233 DKHSEPISNVLE*HVREKHSEPS 38165
>dbj|AP000540.2|AP000540 Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
clone:c53D1
Length = 41100
Score = 38.5 bits (88), Expect = 2.9
Identities = 40/143 (27%), Positives = 61/143 (41%), Gaps = 1/143 (0%)
Frame = -3
Query: 460 HQELQTSVLQKLAKSEKAEKVLHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSV 519
H E +SVL+ + + E+ LES P V L+ V K S+ RS +
Sbjct: 14887 HSEHSSSVLESYVRDKHPERSSSVLESYVRDKYSEPSHCV--LESYV-RQKYSDTHRSVL 14717
Query: 520 TSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKSNRHQRLQHSPAA 579
SSGK H +S ++T SSS E ++ S+ H+R+ S
Sbjct: 14716 ESSGK-------DKHSETSRDALESFERDT*TEHSSSVLETFLREKHSDSHRRVLQSYLR 14558
Query: 580 EKAMGPESGLVLEH-SEKYTSPS 601
+K P S ++ H EK++ PS
Sbjct: 14557 DKHSEPISNVLE*HVREKHSEPS 14489
>gb|AF145646.1|AF145646 Drosophila melanogaster clone GH07921 BcDNA.GH07921 (BcDNA.GH07921)
mRNA, complete cds
Length = 2801
Score = 38.5 bits (88), Expect = 2.9
Identities = 23/70 (32%), Positives = 35/70 (49%)
Frame = +3
Query: 507 DSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPK 566
D K+ EK +SSV SGK K + K S + E + D D S+ + SK+ +
Sbjct: 1011 DGDKSDEKAKSSVEKSGKKKDKDDAKDSKSKKSSSTKKERTSRKDKDKESSGDDRSKERR 1190
Query: 567 SNRHQRLQHS 576
S+RH+ H+
Sbjct: 1191 SSRHRDEDHN 1220
>gb|AE003550.2|AE003550 Drosophila melanogaster genomic scaffold 142000013386050 section 18 of
54, complete sequence
Length = 297486
Score = 38.5 bits (88), Expect = 2.9
Identities = 23/70 (32%), Positives = 35/70 (49%)
Frame = +3
Query: 507 DSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPK 566
D K+ EK +SSV SGK K + K S + E + D D S+ + SK+ +
Sbjct: 105909 DGDKSDEKAKSSVEKSGKKKDKDDAKDSKSKKSSSTKKERTSRKDKDKESSGDDRSKERR 106088
Query: 567 SNRHQRLQHS 576
S+RH+ H+
Sbjct: 106089 SSRHRDEDHN 106118
>gb|AC093435.1| Drosophila melanogaster 3L BAC RP98-7A5 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 172052
Score = 38.5 bits (88), Expect = 2.9
Identities = 23/70 (32%), Positives = 35/70 (49%)
Frame = +2
Query: 507 DSMKNSEKKRSSVTSSGKMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPK 566
D K+ EK +SSV SGK K + K S + E + D D S+ + SK+ +
Sbjct: 72794 DGDKSDEKAKSSVEKSGKKKDKDDAKDSKSKKSSSTKKERTSRKDKDKESSGDDRSKERR 72973
Query: 567 SNRHQRLQHS 576
S+RH+ H+
Sbjct: 72974 SSRHRDEDHN 73003
>gb|AC008139.8|AC008139 Drosophila melanogaster, chromosome 3R, region 85F-86A, BAC clone
BACR28B01, complete sequence
Length = 170675
Score = 38.5 bits (88), Expect = 2.9
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Frame = +3
Query: 222 PRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTS 281
P + + + K S + +K+Q S K+ D K K +NV E EQ V V + KR +
Sbjct: 115626 PDQTKPATKSQSTSAEVKTQKS--MKSFDDKIKEVNVAIE--KEQSRVEVEVNAEKKRKN 115793
Query: 282 -ESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSE 340
E P + + + + + + S H GK+++ A + S + YE+ ++ SE
Sbjct: 115794 VEEAPKNKEGDSQ----QPEESQHKGKNQRRASEPPSTEDLEKRYETLKRRMSSKNQFSE 115961
Query: 341 TSDG-----EQKIRRVMPREDLAVPSAEHQQ---EQMLSSKKNL 376
T D +Q++ E PS E + E + KKN+
Sbjct: 115962 TVDEALERIQQEVISEAVEEKKPPPSTEDLESRFEALHGDKKNV 116093
>emb|AJ131342.1|ATH131342 Arabidopsis thaliana mRNA for LEA-like protein
Length = 1100
Score = 38.1 bits (87), Expect = 3.8
Identities = 33/127 (25%), Positives = 51/127 (39%), Gaps = 5/127 (3%)
Frame = +3
Query: 210 SGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTAD-----KKGKNMNVQAEVHS 264
SG + +SW ++ + + +P L S+K K A K G AE
Sbjct: 468 SGDENDESWTGWAKEKIGIKNEDINSPNLGETVSEKAKEAKEAAKRKAGDAKEKLAETVE 647
Query: 265 EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMS 324
K K + K +E ++ E K K K++ S KSK D S+K + S
Sbjct: 648 TAKEKASDMTSAAKEKAEKLKEEAERESKSAKEKIKESYETAKSKADETLESAKDKASQS 827
Query: 325 YESEAEQ 331
Y+S A +
Sbjct: 828 YDSAARK 848
>ref|NM_112632.1| Arabidopsis thaliana chromosome 3 CHR3v12152001 genomic sequence
Length = 1070
Score = 38.1 bits (87), Expect = 3.8
Identities = 33/127 (25%), Positives = 51/127 (39%), Gaps = 5/127 (3%)
Frame = +1
Query: 210 SGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTAD-----KKGKNMNVQAEVHS 264
SG + +SW ++ + + +P L S+K K A K G AE
Sbjct: 436 SGDENDESWTGWAKEKIGIKNEDINSPNLGETVSEKAKEAKEAAKRKAGDAKEKLAETVE 615
Query: 265 EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMS 324
K K + K +E ++ E K K K++ S KSK D S+K + S
Sbjct: 616 TAKEKASDMTSAAKEKAEKLKEEAERESKSAKEKIKESYETAKSKADETLESAKDKASQS 795
Query: 325 YESEAEQ 331
Y+S A +
Sbjct: 796 YDSAARK 816
>ref|NM_068161.1| Caenorhabditis elegans
Length = 1761
Score = 38.1 bits (87), Expect = 3.8
Identities = 37/152 (24%), Positives = 58/152 (37%), Gaps = 3/152 (1%)
Frame = +1
Query: 72 SPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCV---FCPEPGRNSRIADSIKTD 128
SP P T+V ++ T A P + + S P + P + +S+KT
Sbjct: 1177 SPPPKLPKTVVQPSKEEKPTAKTAAPPVKLLTSSPPPKIPKTVAQPPKEKKPVMESVKTA 1356
Query: 129 SPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVVGSPLLVEEAKTPVQTRTVSIAPSS 188
+P + E + + K E E PA + + P AK + +
Sbjct: 1357 APPAK-EIKPIVAKITEKAAE-PAVPKEVKPAKAATAKP-----AKPVMSYKMTPTRVHK 1515
Query: 189 PSPVKDHNVEIESDCEFLIDESGCLSFKSWFS 220
P D+ VE ESD +F D+S +F W S
Sbjct: 1516 PKSATDYGVESESDSDFERDKSKQKNFPKWAS 1611
>gb|U85969.1|XLU85969 Xenopus laevis middle molecular weight neurofilament protein NF-M(1)
mRNA, complete cds
Length = 2941
Score = 38.1 bits (87), Expect = 3.8
Identities = 27/169 (15%), Positives = 75/169 (43%), Gaps = 4/169 (2%)
Frame = +2
Query: 240 SQSSDKEKTADKKGKNMN-VQAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSK 298
++ ++EK ++KG++ + + +++ K+ + + S S S E + K +
Sbjct: 2168 TEQQEEEKAEEEKGESEEGAEEDAGEDEQAKSPEEKSSEETISVSKAASVGPEKEGAKQE 2347
Query: 299 MQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIR---RVMPRE 355
+ ST K+D +++ ESE + ++ +GLD S+ ++ + V+ +
Sbjct: 2348 EEKSTQRDNGKEDTAVNGDVEEEEVKEESEDKAVVTNGLDDSPSEDKESSKGQQTVVITK 2527
Query: 356 DLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLAN 404
+ ++E + +K K ++ +++V K+ ++ ++
Sbjct: 2528 KIETTTSEGEDGTKYITKSVTVTQKVEEHEETVQEKTVSTKKVEKVTSH 2674
>gb|AF283810.1|AF283810 Streptococcus pyogenes M protein precursor (emm) gene, partial cds
Length = 459
Score = 38.1 bits (87), Expect = 3.8
Identities = 28/117 (23%), Positives = 53/117 (44%), Gaps = 2/117 (1%)
Frame = +2
Query: 286 VSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGE 345
V ++SE K +K++ S A K+ +D K ++ + E L LD + + +
Sbjct: 59 VKAESEVKEVKAEADESKSAPKTWEDRYKELDRYYSLLQETIENMSLENENLDKLSKENQ 238
Query: 346 QKIRRVMPR--EDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQ 400
K+ ++ + L EHQ+E+ ++ KYQ+ + QR V K+ +Q
Sbjct: 239 GKLEKLELDYLKKLDHEHKEHQKEKQQQQQEQEERQKYQEQLERQSQREVEKRYQEQ 409
>gb|AC079273.5| Mus musculus chromosome 12 clone RP23-373N04 strain C57BL/6J, complete
sequence
Length = 175987
Score = 38.1 bits (87), Expect = 3.8
Identities = 23/93 (24%), Positives = 48/93 (50%)
Frame = -1
Query: 199 IESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNV 258
+++ + L++ C+S + I ++ ++ +K+ K+ S K + +KGK
Sbjct: 109777 VKAGQKILME*QECMSKEDRKHISKRKKRGEKEREKEKGEKANSKGKGNSEKEKGKEKGG 109598
Query: 259 QAEVHSEQKTKNVRVQRDLKRTSESHPVSSDSE 291
+ +V SE++ + V++ LK + S SSDSE
Sbjct: 109597 KIKVISEKEKEIVKIYPSLKDLNLSSSASSDSE 109499
>emb|AL451124.13|AL451124 Human DNA sequence from clone RP11-20P5 on chromosome 9, complete
sequence [Homo sapiens]
Length = 164291
Score = 38.1 bits (87), Expect = 3.8
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Frame = +2
Query: 192 VKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKT--- 248
VK H + + ++ L K W I + N K +K+G P+L S +D + T
Sbjct: 38615 VKTHQCACIQETHLMCRDTHRLKIKGWRKIYQANGKQKKEG--VPILVSDKTDFKPTKIK 38788
Query: 249 ADKKGKNMNVQAEVHSEQKT-KNV------------RVQRDLKRTSESHPV 286
DK+G + V+ + E+ T N+ +V RDL+R +SH +
Sbjct: 38789 RDKEGHYIMVKGSIQQEELTILNIYAPNAGAPRFIKQVLRDLQRDLDSHTI 38941
>emb|AL158044.17|AL158044 Human DNA sequence from clone RP11-264C14 on chromosome 10, complete
sequence [Homo sapiens]
Length = 174361
Score = 38.1 bits (87), Expect = 3.8
Identities = 26/128 (20%), Positives = 54/128 (41%)
Frame = +3
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
++ +K +K G K ++ +++K ++GK + E E+K + + +R ++
Sbjct: 65562 KEEKKERKKGRKKERKKERNKERKKEGGREGKKERKREERKKERKERKRKKERKREK--- 65732
Query: 283 SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETS 342
EG+ K K + +K+ K K RKK E E+ G +
Sbjct: 65733 -------KEGRERKEKKEGKKERN*ERKEGKKERQKERKKDRREGGREEGRKEGRKEGSK 65891
Query: 343 DGEQKIRR 350
+G ++ R+
Sbjct: 65892 EGRKEGRK 65915
>dbj|AB022219.1|AB022219 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MKP6
Length = 83233
Score = 38.1 bits (87), Expect = 3.8
Identities = 33/127 (25%), Positives = 51/127 (39%), Gaps = 5/127 (3%)
Frame = -2
Query: 210 SGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKTAD-----KKGKNMNVQAEVHS 264
SG + +SW ++ + + +P L S+K K A K G AE
Sbjct: 20904 SGDENDESWTGWAKEKIGIKNEDINSPNLGETVSEKAKEAKEAAKRKAGDAKEKLAETVE 20725
Query: 265 EQKTKNVRVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMS 324
K K + K +E ++ E K K K++ S KSK D S+K + S
Sbjct: 20724 TAKEKASDMTSAAKEKAEKLKEEAERESKSAKEKIKESYETAKSKADETLESAKDKASQS 20545
Query: 325 YESEAEQ 331
Y+S A +
Sbjct: 20544 YDSAARK 20524
>gb|AC024089.1|AC024089 Caenorhabditis elegans cosmid C36E6, complete sequence
Length = 33142
Score = 37.7 bits (86), Expect = 5.0
Identities = 96/558 (17%), Positives = 169/558 (30%), Gaps = 1/558 (0%)
Frame = +1
Query: 45 TDVTINSPNATSSSTPLVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRS 104
T+ T P +T+SST + TST S ++ T T ST +TP+ + S
Sbjct: 15784 TESTSTPPTSTASSTTESTSTPSTSTASSTTES--TSTPSTSTASSTTESTSTPSTSTAS 15957
Query: 105 KGEPCVFCPEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVV 164
P S +S T S T T S ++ P
Sbjct: 15958 STTESTSTPSTSTASSTTESTSTPSTSTVSSTTEGTSTPSTSTASS---TTESTLTPSTS 16128
Query: 165 GSPLLVEEAKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRK 224
+ E TP T T S S S ES + LS SIP
Sbjct: 16129 TASSTTESTSTP-STSTASSTTESTSTPSTSTATTESTS--TPSTNTALSTTESTSIPST 16299
Query: 225 NR-KSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSES 283
+ S + ++ P + SS E T+ + E S T + T +
Sbjct: 16300 STVSSTTESTSTPSTSTVSSTTESTSTPSTSTASSTTESTSIPSTSTASSTTESTLTPST 16479
Query: 284 HPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSD 343
SS +E S +S+ + + +S + S S + S +S +
Sbjct: 16480 STASSTTESTSTPSTSTASSTTESTSTPSTSTASSTTESTSTPSTS--TASSTTESTSIP 16653
Query: 344 GEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLA 403
+ R E + PS + S+ ++ + ++S S+ T +
Sbjct: 16654 STSTVSRT--TESTSTPST----STVSSTTESTSTPSTSTASSTTESTSIPSTSTASSTT 16815
Query: 404 NDTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXXXXXXXXXXXXXXXMFTSPPHQEL 463
T+ P +S TS P
Sbjct: 16816 ESTLTPSTSTASSTTESTST-----PSTSTASSTTESTSTPSTSTASSTTESTSTPSTST 16980
Query: 464 QTSVLQKLAKSEKAEKVLHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSG 523
+S + + V ES + + T E S +S + +S S+
Sbjct: 16981 VSSTTES-TSTPSTNTVSSTTESTSTPSTSTASSTTESTSTPSTSTASSTTESTSTPSTS 17157
Query: 524 KMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKSNRHQRLQHSPAAEKAM 583
+ + + + +E +T + ++S+ ++ P ++ S E
Sbjct: 17158 TVSSTTESTSTPSTSTASSTTESTSTPSTSTASSTTESTSTPSTS-----TASSTTESTS 17322
Query: 584 GPESGLVLEHSEKYTSPS 601
P + +E ++PS
Sbjct: 17323 TPFTSTASSTTESTSTPS 17376
>gb|AC006616.1|AC006616 Caenorhabditis elegans clone C36E6, complete sequence
Length = 33142
Score = 37.7 bits (86), Expect = 5.0
Identities = 96/558 (17%), Positives = 169/558 (30%), Gaps = 1/558 (0%)
Frame = +1
Query: 45 TDVTINSPNATSSSTPLVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRS 104
T+ T P +T+SST + TST S ++ T T ST +TP+ + S
Sbjct: 15784 TESTSTPPTSTASSTTESTSTPSTSTASSTTES--TSTPSTSTASSTTESTSTPSTSTAS 15957
Query: 105 KGEPCVFCPEPGRNSRIADSIKTDSPVHRGETQVLTFKDVEGLCESPAKLSDPEDDPGVV 164
P S +S T S T T S ++ P
Sbjct: 15958 STTESTSTPSTSTASSTTESTSTPSTSTVSSTTEGTSTPSTSTASS---TTESTLTPSTS 16128
Query: 165 GSPLLVEEAKTPVQTRTVSIAPSSPSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRK 224
+ E TP T T S S S ES + LS SIP
Sbjct: 16129 TASSTTESTSTP-STSTASSTTESTSTPSTSTATTESTS--TPSTNTALSTTESTSIPST 16299
Query: 225 NR-KSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSES 283
+ S + ++ P + SS E T+ + E S T + T +
Sbjct: 16300 STVSSTTESTSTPSTSTVSSTTESTSTPSTSTASSTTESTSIPSTSTASSTTESTLTPST 16479
Query: 284 HPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSD 343
SS +E S +S+ + + +S + S S + S +S +
Sbjct: 16480 STASSTTESTSTPSTSTASSTTESTSTPSTSTASSTTESTSTPSTS--TASSTTESTSIP 16653
Query: 344 GEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQTLA 403
+ R E + PS + S+ ++ + ++S S+ T +
Sbjct: 16654 STSTVSRT--TESTSTPST----STVSSTTESTSTPSTSTASSTTESTSIPSTSTASSTT 16815
Query: 404 NDTVXXXXXXXXXXXXXXXXXXNPEPRRWKSSDXXXXXXXXXXXXXXXXXMFTSPPHQEL 463
T+ P +S TS P
Sbjct: 16816 ESTLTPSTSTASSTTESTST-----PSTSTASSTTESTSTPSTSTASSTTESTSTPSTST 16980
Query: 464 QTSVLQKLAKSEKAEKVLHALESVTDVNNKTPLKAVELLQHLVDSMKNSEKKRSSVTSSG 523
+S + + V ES + + T E S +S + +S S+
Sbjct: 16981 VSSTTES-TSTPSTNTVSSTTESTSTPSTSTASSTTESTSTPSTSTASSTTESTSTPSTS 17157
Query: 524 KMLKKVHHRAHKRACSITRDSEPQNTTDSDSSSAPEVASKKPKSNRHQRLQHSPAAEKAM 583
+ + + + +E +T + ++S+ ++ P ++ S E
Sbjct: 17158 TVSSTTESTSTPSTSTASSTTESTSTPSTSTASSTTESTSTPSTS-----TASSTTESTS 17322
Query: 584 GPESGLVLEHSEKYTSPS 601
P + +E ++PS
Sbjct: 17323 TPFTSTASSTTESTSTPS 17376
>emb|AL355931.1|NCB3E4 Neurospora crassa DNA linkage group II BAC clone B3E4
Length = 62421
Score = 37.7 bits (86), Expect = 5.0
Identities = 25/98 (25%), Positives = 49/98 (49%)
Frame = +1
Query: 719 PTSIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQ 778
P ++ D V QE L I+ + + +D + + K++N F AG + L P K +
Sbjct: 8629 PPALDDEVEVQEKQL-AISGRAIRTQKVKDAAFRYAKTVNEGFFGAGVVDLPPGAVKRPK 8805
Query: 779 FVHMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAG 816
+ F+V G+++ T+++T + + G ++VP G
Sbjct: 8806 NSRKMFMTFFVYTGRVLVTVNETVFRIGKGGMWFVPRG 8919
>emb|AL021046.3|SPAC3G9 S.pombe chromosome I cosmid c3G9
Length = 38096
Score = 37.7 bits (86), Expect = 5.0
Identities = 54/241 (22%), Positives = 92/241 (37%), Gaps = 22/241 (9%)
Frame = +3
Query: 189 PSPVKDHNVEIESDCEFLIDESGCLSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKT 248
PSP K + I+S + + LS +P KNR S P S++
Sbjct: 1110 PSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDH 1289
Query: 249 ADKKGKNMNVQAEVHSEQKTKNVRVQRDLKR--TSESHPV---------SSDSEGKVLKS 297
+ ++ + E + T Q+ L+R T ES P S S K+LK
Sbjct: 1290 STPSPPSIRTKLEAFAPNST--FATQKRLRRLATLESSPALRSTLKSLQSKSSPVKLLKL 1463
Query: 298 KMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETSDGEQKIRR------- 350
K + + + K + ++K+ ES L S + E K +R
Sbjct: 1464 KEEKAKIKNQLFKSEEEKDPVGKQKLPLESSLSPLDHSSAEKEMQKAPAKNKRRRTGSLE 1643
Query: 351 --VMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTK--QTLANDT 406
+ P+E PS + + + S K ++P ++ + + S+ KK TK Q LA +
Sbjct: 1644 TGLYPKES-PTPSKKRSKRVLWSLKHIVSPGNREKHSLNSTPESIMKKDTKWPQNLAKNN 1820
Query: 407 V 407
+
Sbjct: 1821 I 1823
>gb|AY069867.1| Drosophila melanogaster SD10857 full length cDNA
Length = 1442
Score = 37.4 bits (85), Expect = 6.6
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Frame = +2
Query: 226 RKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSESHP 285
R++++ + P+L+ ++ KEK ++ + + + EQK + Q D + E+
Sbjct: 545 RRTEEKVKSTPLLQYLANKKEKRREEARRRNEEKRKQREEQKLLRLAAQSDASKLKEAEG 724
Query: 286 VSSDSE-GKVLKSKMQSSTHAGKSKKDALKGSSKHR--KKMSYESEAEQLMLSGLDSETS 342
+ K K ++ +G DA SK R + E EQ L D +
Sbjct: 725 GGGGGDTKKPAKKDVKDPQSSGSQANDAKASRSKRRTERDQRRREEHEQRKLVKRDKKKD 904
Query: 343 DGEQK 347
DG+ K
Sbjct: 905 DGQGK 919
>gb|AC006832.2| Caenorhabditis elegans cosmid ZK355, complete sequence
Length = 23502
Score = 37.4 bits (85), Expect = 6.6
Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 10/189 (5%)
Frame = +1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSE-----QKTKNVRVQRDL 277
RKNRK +K + + KEK KKG+ + E + +K K +D
Sbjct: 15118 RKNRKKEKKRERK---REKEKKKEKKEKKKGRKKEKKKEKREKREKKGKKRKKKEKNKDR 15288
Query: 278 KRTSESHPVSSDSEGKVLKSKMQS---STHAGKSKKDALKGSSKHRKKMSYESEA--EQL 332
K+ E + K K K + G+ KK K K RKK + +A E+
Sbjct: 15289 KKRKEKSGKGREKRKKAKKEKKKRKK*KKKKGRGKKRKKKKRKKKRKKRKRKKKAKKEKK 15468
Query: 333 MLSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRS 392
E + +++I+ + R+ + + ++ + L K+ + + K ++
Sbjct: 15469 KEKRDKREKKEKKERIKTIKKRKKNKKKARKRKK*EKLEKKRKRREKEKNKEREKKRKKR 15648
Query: 393 VHKKQTKQT 401
+++ ++T
Sbjct: 15649 *KREKKRKT 15675
>gb|AF064865.1|AF064865 Homo sapiens chromosome 21q22.3 PAC 58D10, complete sequence
Length = 159424
Score = 37.4 bits (85), Expect = 6.6
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Frame = +1
Query: 213 LSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKT---ADKKGKNMNVQAEVHSEQKT- 268
L K W I + NRK +K G A PV S +D + T DK+G + V+ + E+ T
Sbjct: 40573 LKIKGWRKIYQANRKQKKAGVAIPV--SDKTDLKPTKIKRDKEGHYIMVKGSIQQEELTI 40746
Query: 269 KNV------------RVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGS 316
N+ +V RDL+R +SH + + L S + ST +K S
Sbjct: 40747 LNIYAPNTGALRFIKQVLRDLQRDLDSHTIIM-GDFNTLLSTLDRSTRQKVNKDIQEVNS 40923
Query: 317 SKHR 320
+ H+
Sbjct: 40924 ALHQ 40935
>gb|AC093787.3| Homo sapiens chromosome 2 clone RP11-215P9, complete sequence
Length = 86945
Score = 37.4 bits (85), Expect = 6.6
Identities = 31/178 (17%), Positives = 70/178 (38%)
Frame = -2
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
++ RKS+K+G K + +K K KK + E E+K + + ++ ++
Sbjct: 57340 KRRRKSEKEGREGGREKGRKGEKRKQEHKK------ERETEKERKKERKKERKKERKKER 57179
Query: 283 SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSETS 342
+ E K K + K K+ K + RK++ E E+ G D
Sbjct: 57178 KKQERKNKERKEEGRKERRKREC*KRKRQETKKIKRRRKEVKKEVRKEKGGKKGRDEGRK 56999
Query: 343 DGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSVHKKQTKQ 400
G ++ R+ +++ ++E+ K+ + + K ++ K++ ++
Sbjct: 56998 GGMKEGRKKERKQESEKERIREKEEKKGGRKEGRMEGRKNEERKKERRKEGEKRKKRK 56825
>ref|NM_060130.1| Caenorhabditis elegans
Length = 660
Score = 37.4 bits (85), Expect = 6.6
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Frame = +1
Query: 224 KNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSES 283
K + +KDG K + D +K K GK + + + + + K + D K+ +
Sbjct: 292 KKDEEKKDGEKKSEKKDEKKDDKKDDKKDGKKEDEKKDDEKKDEEKKDDKKEDDKKGDKK 471
Query: 284 HPVSSDS---EGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLMLSGLDSE 340
D + K KSK + S + KSKK SK KK + + ++ D E
Sbjct: 472 DEKKDDEKKDDKKEAKSKSKKSKKSKKSKK------SKREKKDEDKKDDDKKDDDKKDDE 633
Query: 341 TSDGEQK 347
D E+K
Sbjct: 634 KKDDEKK 654
>dbj|AK015651.1|AK015651 Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4930488P18:homolog to CYLICIN II
(MULTIPLE-BAND POLYPEPTIDE II), full insert sequence
Length = 1067
Score = 37.4 bits (85), Expect = 6.6
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Frame = +3
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNM-----NVQAEVHSEQKTKNVRVQR-- 275
+K K +KDG A + +DKE + KN+ + V S+ + + V+R
Sbjct: 399 KKEVKMKKDGFEAKEKTALKTDKEGSPKPAKKNIPRDSQKDKGRVSSDSEGEKAGVKRGS 578
Query: 276 -DLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLML 334
+K T + +S+SEG+ SK ++ T K KD + S +K + EA+
Sbjct: 579 KKVKNTPKGTDSASESEGEKAGSKKEAKT-TKKGSKDKVSLSESGGEKAGSKKEAKTTKK 755
Query: 335 SGLDSETSD-------GEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASK 387
D ++ G +K + +E SA + SKK K ++S+
Sbjct: 756 GSKDKVSATESGGEKAGSKKEAKTTKKESKDKVSATESGGEKAGSKKEARDDKKDATSSQ 935
>ref|NM_101434.1| Arabidopsis thaliana chromosome 1 CHR1v12152001 genomic sequence
Length = 2133
Score = 37.4 bits (85), Expect = 6.6
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 643 VRRTKRIRLKPLEYWRGERVTY 664
VRR+ RI+ +PLEYWRGER Y
Sbjct: 1921 VRRSTRIKSRPLEYWRGERFLY 1986
>gb|AC013453.1|AC013453 Arabidopsis thaliana chromosome I BAC T16N11 genomic sequence, complete
sequence
Length = 91001
Score = 37.4 bits (85), Expect = 6.6
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 643 VRRTKRIRLKPLEYWRGERVTY 664
VRR+ RI+ +PLEYWRGER Y
Sbjct: 88140 VRRSTRIKSRPLEYWRGERFLY 88205
>gb|AF064862.1|AF064862 Homo sapiens chromosome 21q22.3 PAC 31P10, complete sequence
Length = 145861
Score = 37.0 bits (84), Expect = 8.6
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Frame = -3
Query: 213 LSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKT---ADKKGKNMNVQAEVHSEQKT- 268
L K W I + NRK +K G A PV S +D + T DK+G + V+ + E+ T
Sbjct: 24113 LKIKGWRKIYQANRKQKKAGVAIPV--SDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTI 23940
Query: 269 KNV------------RVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGS 316
N+ +V RDL+R +SH + + L S + ST +K S
Sbjct: 23939 LNIYAPNTGALRFIKQVLRDLQRDLDSHTIIM-GDFNTLLSTLDRSTRQKVNKDIQEVNS 23763
Query: 317 SKHR 320
+ H+
Sbjct: 23762 ALHQ 23751
>ref|NM_058900.1| Caenorhabditis elegans
Length = 1515
Score = 37.0 bits (84), Expect = 8.6
Identities = 36/191 (18%), Positives = 85/191 (43%), Gaps = 8/191 (4%)
Frame = +1
Query: 222 PRKNRKSQKDGSAAP---VLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRD-- 276
P K R+ Q + P + Q S + + + N +AE+ S+++ + V +Q D
Sbjct: 472 PAKRRRDQSRSKSPPRRNYRQRQRSGSPPVRNWRDEEENRRAEMWSKRRFQRVNIQADGL 651
Query: 277 --LKRTSESHPVSSDS-EGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLM 333
+ S +H D+ + +V ++Q+ + + + K R+ + + +E
Sbjct: 652 NNIWGHSPTHEEIHDTYKLRVAAEEIQAENEKKREELKEDRRKEKKREMRAVRNVSEDDS 831
Query: 334 LSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSV 393
+ +SE SD EQK ++ + + + + ++++ SKK + ++ ++ QR
Sbjct: 832 STSSESEESDFEQKKKKKVKKSKKSKKDKKKEKKEKKKSKK--ANKEKEERRARREQRKK 1005
Query: 394 HKKQTKQTLAN 404
+ + K+ + N
Sbjct: 1006ERAELKRKINN 1038
>emb|AL358177.19|AL358177 Human DNA sequence from clone RP11-469G10 on chromosome 1, complete
sequence [Homo sapiens]
Length = 91202
Score = 37.0 bits (84), Expect = 8.6
Identities = 25/109 (22%), Positives = 50/109 (44%)
Frame = -1
Query: 223 RKNRKSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLKRTSE 282
RK ++ +KDG K + +E+ +K+G+ + + E++ K R +R+ ++ +
Sbjct: 41141 RKRKEGRKDGREEGRKKGRERGREEGREKRGRE---REKERKEEREKQGRKEREKEKERK 40971
Query: 283 SHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQ 331
+ + K K + + K KK+ K K RKK E E ++
Sbjct: 40970 KKERRKEGK-KERKKERRKERKKRKKKKERKKERKKERKKEKKEKERKK 40827
>gb|AF129858.1|AF129858 Zea mays CENPCB protein (CenpcB) mRNA, partial cds
Length = 1495
Score = 37.0 bits (84), Expect = 8.6
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 643 VRRTKRIRLKPLEYWRGERVTY 664
VRR+ RIR +PLEYW GER+ Y
Sbjct: 1152 VRRSSRIRSRPLEYWLGERLLY 1217
>gb|AC006627.1| Caenorhabditis elegans cosmid E01A2, complete sequence
Length = 23483
Score = 37.0 bits (84), Expect = 8.6
Identities = 36/191 (18%), Positives = 85/191 (43%), Gaps = 8/191 (4%)
Frame = -3
Query: 222 PRKNRKSQKDGSAAP---VLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRD-- 276
P K R+ Q + P + Q S + + + N +AE+ S+++ + V +Q D
Sbjct: 6663 PAKRRRDQSRSKSPPRRNYRQRQRSGSPPVRNWRDEEENRRAEMWSKRRFQRVNIQADGL 6484
Query: 277 --LKRTSESHPVSSDS-EGKVLKSKMQSSTHAGKSKKDALKGSSKHRKKMSYESEAEQLM 333
+ S +H D+ + +V ++Q+ + + + K R+ + + +E
Sbjct: 6483 NNIWGHSPTHEEIHDTYKLRVAAEEIQAENEKKREELKEDRRKEKKREMRAVRNVSEDDS 6304
Query: 334 LSGLDSETSDGEQKIRRVMPREDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAYQRSV 393
+ +SE SD EQK ++ + + + + ++++ SKK + ++ ++ QR
Sbjct: 6303 STSSESEESDFEQKKKKKVKKSKKSKKDKKKEKKEKKKSKK--ANKEKEERRARREQRKK 6130
Query: 394 HKKQTKQTLAN 404
+ + K+ + N
Sbjct: 6129 ERAELKRKINN 6097
>ref|NM_022328.1| Mus musculus myeloid/lymphoid or mixed lineage-leukemia translocation
to 4 homolog (Drosophila) (Mllt1), mRNA
Length = 1644
Score = 37.0 bits (84), Expect = 8.6
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 13/182 (7%)
Frame = +1
Query: 223 RKNRKSQKDGSA-APVLKSQSS---DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLK 278
+K +KS G+ AP ++S DK+ DK K +AE R+ K
Sbjct: 868 KKPKKSGSKGTRRAPGTSPRASSFPDKKVARDKNSKGDKGKAESEP----------REAK 1017
Query: 279 RTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGS----SKHRKKMSYESEAEQLML 334
RT ++ +S+ E QSS S D+ S S++ + S E L
Sbjct: 1018 RTLQTEDSNSEDEASFRSESAQSSPANASSSSDSSSDSDFEPSQNHSQGPLRSMVEDLQS 1197
Query: 335 SGLD-SETSDGEQKIRRVMP----REDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAY 389
G D ++S GE+ + P R + +++ + L ++ L P K +SK
Sbjct: 1198 EGSDEDDSSSGEENTGKANPGRESRLSFSDSESDNSADSCLPGREPLPPQKPPPPSSKVS 1377
Query: 390 QR 391
R
Sbjct: 1378 GR 1383
>gb|AF298887.1|AF298887 Mus musculus Btk-PH-domain binding protein mRNA, complete cds
Length = 1644
Score = 37.0 bits (84), Expect = 8.6
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 13/182 (7%)
Frame = +1
Query: 223 RKNRKSQKDGSA-APVLKSQSS---DKEKTADKKGKNMNVQAEVHSEQKTKNVRVQRDLK 278
+K +KS G+ AP ++S DK+ DK K +AE R+ K
Sbjct: 868 KKPKKSGSKGTRRAPGTSPRASSFPDKKVARDKNSKGDKGKAESEP----------REAK 1017
Query: 279 RTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGS----SKHRKKMSYESEAEQLML 334
RT ++ +S+ E QSS S D+ S S++ + S E L
Sbjct: 1018 RTLQTEDSNSEDEASFRSESAQSSPANASSSSDSSSDSDFEPSQNHSQGPLRSMVEDLQS 1197
Query: 335 SGLD-SETSDGEQKIRRVMP----REDLAVPSAEHQQEQMLSSKKNLTPCKYQQSASKAY 389
G D ++S GE+ + P R + +++ + L ++ L P K +SK
Sbjct: 1198 EGSDEDDSSSGEENTGKANPGRESRLSFSDSESDNSADSCLPGREPLPPQKPPPPSSKVS 1377
Query: 390 QR 391
R
Sbjct: 1378 GR 1383
>emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081
Length = 340000
Score = 37.0 bits (84), Expect = 8.6
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Frame = +3
Query: 213 LSFKSWFSIPRKNRKSQKDGSAAPVLKSQSSDKEKT---ADKKGKNMNVQAEVHSEQKT- 268
L K W I + NRK +K G A PV S +D + T DK+G + V+ + E+ T
Sbjct: 275940 LKIKGWRKIYQANRKQKKAGVAIPV--SDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTI 276113
Query: 269 KNV------------RVQRDLKRTSESHPVSSDSEGKVLKSKMQSSTHAGKSKKDALKGS 316
N+ +V RDL+R +SH + + L S + ST +K S
Sbjct: 276114 LNIYAPNTGALRFIKQVLRDLQRDLDSHTIIM-GDFNTLLSTLDRSTRQKVNKDIQEVNS 276290
Query: 317 SKHR 320
+ H+
Sbjct: 276291 ALHQ 276302
>emb|AL592183.10|AL592183 Human DNA sequence from clone RP11-297D8 on chromosome 22, complete
sequence [Homo sapiens]
Length = 179198
Score = 37.0 bits (84), Expect = 8.6
Identities = 28/88 (31%), Positives = 38/88 (42%), Gaps = 14/88 (15%)
Frame = -2
Query: 213 LSFKSWFSIPRKNRKSQKDGSAAPVL-KSQSSDKEKTADKKGKNMNVQAEVHSEQKT--- 268
L K W I N K K G A PVL K+ + DK+G + V+ + E+KT
Sbjct: 7261 LKIKGWRKIYEANGKQNKAGVAIPVLDKTDFKPTKIKRDKEGHYIMVKGSIQQEEKTILN 7082
Query: 269 ---KNVRVQR-------DLKRTSESHPV 286
N R R DL+R +SH +
Sbjct: 7081 IHAPNTRAPRFMEQVLSDLQRDVDSHTI 6998
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 19, 2002 12:00 AM
Number of letters in database: 587,334,133
Number of sequences in database: 1,164,257
Lambda K H
0.310 0.126 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,259,661,553
Number of Sequences: 1164257
Number of extensions: 59952033
Number of successful extensions: 228290
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 37214
Number of HSP's successfully gapped in prelim test: 15320
Number of HSP's that attempted gapping in prelim test: 160006
Number of HSP's gapped (non-prelim): 119099
length of query: 853
length of database: 1,627,433,809
effective HSP length: 144
effective length of query: 709
effective length of database: 1,459,780,801
effective search space: 1034984587909
effective search space used: 1034984587909
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 84 (37.0 bits)