TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(235 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,164,257 sequences; 587,334,133 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB055783.1|AB055783 Gallus gallus mRNA for centromere p... 459 e-128
gb|BC012024.1|BC012024 Homo sapiens, kinetochore protein CE... 129 2e-28
ref|NM_022909.1| Homo sapiens centromere protein H (CENPH),... 129 2e-28
dbj|AB035124.1|AB035124 Homo sapiens mRNA for kinetochore p... 129 2e-28
gb|BC015355.1|BC015355 Homo sapiens, kinetochore protein CE... 129 2e-28
ref|NM_021886.1| Mus musculus centromere autoantigen H (Cen... 105 2e-21
dbj|AB017634.1|AB017634 Mus musculus mRNA for ENP, complete... 105 2e-21
dbj|AK006208.1|AK006208 Mus musculus adult male testis cDNA... 105 2e-21
dbj|AK012907.1|AK012907 Mus musculus 10, 11 days embryo who... 98 5e-19
dbj|AK011738.1|AK011738 Mus musculus 10 days embryo whole b... 61 1e-17
dbj|AK010533.1|AK010533 Mus musculus ES cells cDNA, RIKEN f... 92 3e-17
gb|L26956.1|HAMFAR Mesocricetus auratus stearyl-CoA desatur... 59 2e-07
dbj|AK011264.1|AK011264 Mus musculus 10 days embryo whole b... 59 4e-07
gb|AC022107.8| Homo sapiens chromosome 5 clone CTC-351M12, ... 46 0.003
gb|AF097904.1|AF097904 Rana catesbeiana myosin heavy chain ... 35 3.7
gb|AC005397.2|AC005397 Arabidopsis thaliana chromosome II s... 35 6.3
gb|AF400249.1|AF400249 Giardia intestinalis axoneme-associa... 35 6.3
gb|AC004915.1|AC004915 Homo sapiens PAC clone RP5-888A21 fr... 34 8.2
>dbj|AB055783.1|AB055783 Gallus gallus mRNA for centromere protein H, complete cds
Length = 1482
Score = 459 bits (1181), Expect = e-128
Identities = 235/235 (100%), Positives = 235/235 (100%)
Frame = +3
Query: 1 MAGRLSESVGSGPGAEAETAADPDAKRDVLEHLCARTHLKQLVMEFDTACPPDEGCNSGA 60
MAGRLSESVGSGPGAEAETAADPDAKRDVLEHLCARTHLKQLVMEFDTACPPDEGCNSGA
Sbjct: 42 MAGRLSESVGSGPGAEAETAADPDAKRDVLEHLCARTHLKQLVMEFDTACPPDEGCNSGA 221
Query: 61 EVNFIESAKETLEEVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDII 120
EVNFIESAKETLEEVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDII
Sbjct: 222 EVNFIESAKETLEEVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDII 401
Query: 121 KLNWEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVVRMKIAEKL 180
KLNWEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVVRMKIAEKL
Sbjct: 402 KLNWEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVVRMKIAEKL 581
Query: 181 KFIHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDISIQNLL 235
KFIHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDISIQNLL
Sbjct: 582 KFIHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDISIQNLL 746
>gb|BC012024.1|BC012024 Homo sapiens, kinetochore protein CENP-H, clone MGC:21431
IMAGE:4510607, mRNA, complete cds
Length = 1379
Score = 129 bits (323), Expect = 2e-28
Identities = 79/226 (34%), Positives = 139/226 (60%), Gaps = 4/226 (1%)
Frame = +1
Query: 10 GSGPGAEAETAADPDAKRDVLEHLCARTHLKQLVMEFDTACPPDEGCNSGA--EVNFIES 67
G P AA + + +L L A+T KQ ++E+ + E + IE+
Sbjct: 130 GGPPQVAGAQAACSEDRMTLLLRLRAQT--KQQLLEYKSMVDASEEKTPEQIMQEKQIEA 303
Query: 68 AKETLE-EVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLNWEI 126
E LE E+ +VK AFE K L + R++L AL+K +++ + ++++ M+ +++LN I
Sbjct: 304 KIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKISRQSSVLMDNMKHLLELNKLI 483
Query: 127 IQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKK-EVVRMKIAEKLKFIHR 185
+++ Q++ + E L DIR+KR LKQA K L I T K+K ++ M+ +E++K I +
Sbjct: 484 MKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKNKQKIDLDSMENSERIKIIRQ 663
Query: 186 NVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDISI 231
N+Q E K+TT++Q++ QN+I+G ++NWA+DP+L+ I+LQLEK++ +
Sbjct: 664 NLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQLEKNVDM 801
>ref|NM_022909.1| Homo sapiens centromere protein H (CENPH), mRNA
Length = 744
Score = 129 bits (323), Expect = 2e-28
Identities = 79/226 (34%), Positives = 139/226 (60%), Gaps = 4/226 (1%)
Frame = +1
Query: 10 GSGPGAEAETAADPDAKRDVLEHLCARTHLKQLVMEFDTACPPDEGCNSGA--EVNFIES 67
G P AA + + +L L A+T KQ ++E+ + E + IE+
Sbjct: 67 GGPPQVAGAQAACSEDRMTLLLRLRAQT--KQQLLEYKSMVDASEEKTPEQIMQEKQIEA 240
Query: 68 AKETLE-EVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLNWEI 126
E LE E+ +VK AFE K L + R++L AL+K +++ + ++++ M+ +++LN I
Sbjct: 241 KIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKISRQSSVLMDNMKHLLELNKLI 420
Query: 127 IQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKK-EVVRMKIAEKLKFIHR 185
+++ Q++ + E L DIR+KR LKQA K L I T K+K ++ M+ +E++K I +
Sbjct: 421 MKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKNKQKIDLDSMENSERIKIIRQ 600
Query: 186 NVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDISI 231
N+Q E K+TT++Q++ QN+I+G ++NWA+DP+L+ I+LQLEK++ +
Sbjct: 601 NLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQLEKNVDM 738
>dbj|AB035124.1|AB035124 Homo sapiens mRNA for kinetochore protein CENP-H, complete cds
Length = 744
Score = 129 bits (323), Expect = 2e-28
Identities = 79/226 (34%), Positives = 139/226 (60%), Gaps = 4/226 (1%)
Frame = +1
Query: 10 GSGPGAEAETAADPDAKRDVLEHLCARTHLKQLVMEFDTACPPDEGCNSGA--EVNFIES 67
G P AA + + +L L A+T KQ ++E+ + E + IE+
Sbjct: 67 GGPPQVAGAQAACSEDRMTLLLRLRAQT--KQQLLEYKSMVDASEEKTPEQIMQEKQIEA 240
Query: 68 AKETLE-EVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLNWEI 126
E LE E+ +VK AFE K L + R++L AL+K +++ + ++++ M+ +++LN I
Sbjct: 241 KIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKISRQSSVLMDNMKHLLELNKLI 420
Query: 127 IQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKK-EVVRMKIAEKLKFIHR 185
+++ Q++ + E L DIR+KR LKQA K L I T K+K ++ M+ +E++K I +
Sbjct: 421 MKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKNKQKIDLDSMENSERIKIIRQ 600
Query: 186 NVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDISI 231
N+Q E K+TT++Q++ QN+I+G ++NWA+DP+L+ I+LQLEK++ +
Sbjct: 601 NLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQLEKNVDM 738
>gb|BC015355.1|BC015355 Homo sapiens, kinetochore protein CENP-H, clone MGC:21458
IMAGE:3451767, mRNA, complete cds
Length = 1387
Score = 129 bits (323), Expect = 2e-28
Identities = 79/226 (34%), Positives = 139/226 (60%), Gaps = 4/226 (1%)
Frame = +1
Query: 10 GSGPGAEAETAADPDAKRDVLEHLCARTHLKQLVMEFDTACPPDEGCNSGA--EVNFIES 67
G P AA + + +L L A+T KQ ++E+ + E + IE+
Sbjct: 136 GGPPQVAGAQAACSEDRMTLLLRLRAQT--KQQLLEYKSMVDASEEKTPEQIMQEKQIEA 309
Query: 68 AKETLE-EVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLNWEI 126
E LE E+ +VK AFE K L + R++L AL+K +++ + ++++ M+ +++LN I
Sbjct: 310 KIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKISRQSSVLMDNMKHLLELNKLI 489
Query: 127 IQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKK-EVVRMKIAEKLKFIHR 185
+++ Q++ + E L DIR+KR LKQA K L I T K+K ++ M+ +E++K I +
Sbjct: 490 MKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKNKQKIDLDSMENSERIKIIRQ 669
Query: 186 NVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDISI 231
N+Q E K+TT++Q++ QN+I+G ++NWA+DP+L+ I+LQLEK++ +
Sbjct: 670 NLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQLEKNVDM 807
>ref|NM_021886.1| Mus musculus centromere autoantigen H (Cenph), mRNA
Length = 1239
Score = 105 bits (263), Expect = 2e-21
Identities = 63/168 (37%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Frame = +2
Query: 65 IESAKETLE-EVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLN 123
IE E LE E+ VKS E K+L + R++L ALR ++ ++ + M+ I+KL
Sbjct: 311 IEVKIEELENEIEDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLTDDMKHILKLQ 490
Query: 124 WEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVV-RMKIAEKLKF 182
I+++ +++ + + L D+R+KR LKQA K L I K+KE V +M+ +E +K
Sbjct: 491 KLIMKSQEESSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKT 670
Query: 183 IHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDIS 230
+ + +Q E K+TT+VQ+ Q +I+ + NWA+DP+LR +LQLEKD++
Sbjct: 671 MKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLN 814
>dbj|AB017634.1|AB017634 Mus musculus mRNA for ENP, complete cds
Length = 1239
Score = 105 bits (263), Expect = 2e-21
Identities = 63/168 (37%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Frame = +2
Query: 65 IESAKETLE-EVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLN 123
IE E LE E+ VKS E K+L + R++L ALR ++ ++ + M+ I+KL
Sbjct: 311 IEVKIEELENEIEDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLTDDMKHILKLQ 490
Query: 124 WEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVV-RMKIAEKLKF 182
I+++ +++ + + L D+R+KR LKQA K L I K+KE V +M+ +E +K
Sbjct: 491 KLIMKSQEESSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKT 670
Query: 183 IHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDIS 230
+ + +Q E K+TT+VQ+ Q +I+ + NWA+DP+LR +LQLEKD++
Sbjct: 671 MKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLN 814
>dbj|AK006208.1|AK006208 Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:1700021I11:centromere autoantigen H, full
insert sequence
Length = 1223
Score = 105 bits (263), Expect = 2e-21
Identities = 63/168 (37%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Frame = +1
Query: 65 IESAKETLE-EVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLN 123
IE E LE E+ VKS E K+L + R++L ALR ++ ++ + M+ I+KL
Sbjct: 295 IEVKIEELENEIEDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLTDDMKHILKLQ 474
Query: 124 WEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVV-RMKIAEKLKF 182
I+++ +++ + + L D+R+KR LKQA K L I K+KE V +M+ +E +K
Sbjct: 475 KLIMKSQEESSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKT 654
Query: 183 IHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDIS 230
+ + +Q E K+TT+VQ+ Q +I+ + NWA+DP+LR +LQLEKD++
Sbjct: 655 MKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLN 798
>dbj|AK012907.1|AK012907 Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2810046K12:ENP, full insert
sequence
Length = 1170
Score = 98.2 bits (243), Expect = 5e-19
Identities = 54/155 (34%), Positives = 97/155 (61%), Gaps = 1/155 (0%)
Frame = +1
Query: 77 KVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLNWEIIQAHQQARVI 136
+ K +E K+L + R++L AL+ ++ ++ + M+ I+KL I+++ +++ +
Sbjct: 295 RCKR*YEMKSLALSRMKLSVALQDNMENMGPENCVLTDDMKHILKLQKLIMKSQEESSEL 474
Query: 137 RENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVV-RMKIAEKLKFIHRNVQYERKVTT 195
+ L D+R+KR LKQA K L I K+KE V +M+ +E +K + + +Q E K+TT
Sbjct: 475 EKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITT 654
Query: 196 LVQNILQNIIVGCQINWAKDPSLRAIILQLEKDIS 230
+VQ+ Q +I+ + NWA+DP+LR +LQLEKD++
Sbjct: 655 VVQHTFQGLILASKTNWAEDPALRETVLQLEKDLN 759
>dbj|AK011738.1|AK011738 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2610042E10:centromere
autoantigen H, full insert sequence
Length = 1208
Score = 61.2 bits (147), Expect(2) = 1e-17
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Frame = +2
Query: 65 IESAKETLE-EVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLN 123
IE E LE E+ VKS E K+L + R++L ALR ++ ++ + M+ I+KL
Sbjct: 296 IEVKIEELENEIEDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLTDDMKHILKLQ 475
Query: 124 WEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKE-VVRMKIAEKLKF 182
I+++ +++ + + L D+R+KR LKQA K L I K+KE V +M+ +E +K
Sbjct: 476 KLIMKSQEESSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKT 655
Query: 183 IHRNVQYERK 192
+ +N Y R+
Sbjct: 656 MKKN--YRRR 679
Score = 52.8 bits (125), Expect(2) = 1e-17
Identities = 22/46 (47%), Positives = 35/46 (75%)
Frame = +1
Query: 185 RNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDIS 230
+ +Q E K+TT+VQ+ Q +I+ + NWA+DP+LR +LQLEKD++
Sbjct: 661 KKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLN 798
>dbj|AK010533.1|AK010533 Mus musculus ES cells cDNA, RIKEN full-length enriched library,
clone:2410018A12:ENP, full insert sequence
Length = 1286
Score = 92.4 bits (228), Expect = 3e-17
Identities = 55/174 (31%), Positives = 102/174 (58%), Gaps = 8/174 (4%)
Frame = +1
Query: 65 IESAKETLEEVGKV------KSAFESKALVIKRIQLMDALRKRVKENDGCARLIV-ETMR 117
+E+ K+ L E+ + +K L +K++ ++ + EN G ++ + M+
Sbjct: 355 LENVKQALVEIDNL*G**TNVMIVNAKGLALKQV*NFESALRDNMENMGPENCVLTDDMK 534
Query: 118 DIIKLNWEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVV-RMKI 176
I+KL I+++ +++ + + L D+R+K+ LKQA K L I K+KE V +M+
Sbjct: 535 HILKLQKLIMKSQEESSELEKKLLDVRKKKLQLKQASRSKLLEIQIEKNKQKEDVDKMEN 714
Query: 177 AEKLKFIHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDIS 230
+E +K + + +Q E K+TT+VQ+ Q +I+ + NWA+DP+LR +LQLEKD++
Sbjct: 715 SEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLN 876
>gb|L26956.1|HAMFAR Mesocricetus auratus stearyl-CoA desaturase (FAR-17c) mRNA, complete
cds
Length = 2805
Score = 59.3 bits (142), Expect = 2e-07
Identities = 25/65 (38%), Positives = 46/65 (70%)
Frame = +1
Query: 166 RKKKEVVRMKIAEKLKFIHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQL 225
++KK++ M+ +E +K + + K+TT++Q++ Q +I+G + NWA+D LR I+LQL
Sbjct: 1372 KQKKDLDNMENSEVIKTMQKKAADGDKITTVIQHVFQGLILGSKTNWAEDSGLREIVLQL 1551
Query: 226 EKDIS 230
EKD++
Sbjct: 1552 EKDLT 1566
>dbj|AK011264.1|AK011264 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2610001L24:centromere
autoantigen H, full insert sequence
Length = 1210
Score = 58.5 bits (140), Expect = 4e-07
Identities = 41/119 (34%), Positives = 68/119 (56%), Gaps = 2/119 (1%)
Frame = +2
Query: 65 IESAKETLE-EVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLN 123
IE E LE E+ VKS E K+L + R++L ALR ++ ++ + M+ I+KL
Sbjct: 296 IEVKIEELENEIEDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLTDDMKHILKLQ 475
Query: 124 WEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKE-VVRMKIAEKLK 181
I+++ +++ + + L D+R+KR LKQA K L I K+KE V +M+ +E +K
Sbjct: 476 KLIMKSQEESSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIK 652
Score = 53.9 bits (128), Expect = 1e-05
Identities = 25/64 (39%), Positives = 44/64 (68%)
Frame = +3
Query: 167 KKKEVVRMKIAEKLKFIHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLE 226
+K+ + R +I + + + +Q E K+TT+VQ+ Q +I+ + NWA+DP+LR +LQLE
Sbjct: 609 RKRMLTRWRILK**RP*KKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLE 788
Query: 227 KDIS 230
KD++
Sbjct: 789 KDLN 800
>gb|AC022107.8| Homo sapiens chromosome 5 clone CTC-351M12, complete sequence
Length = 122276
Score = 45.8 bits (107), Expect = 0.003
Identities = 17/31 (54%), Positives = 28/31 (89%)
Frame = +1
Query: 201 LQNIIVGCQINWAKDPSLRAIILQLEKDISI 231
LQN+I+G ++NWA+DP+L+ I+LQLEK++ +
Sbjct: 115159 LQNLILGSKVNWAEDPALKEIVLQLEKNVDM 115251
>gb|AF097904.1|AF097904 Rana catesbeiana myosin heavy chain (MHC-1) mRNA, partial cds
Length = 2772
Score = 35.4 bits (80), Expect = 3.7
Identities = 32/147 (21%), Positives = 67/147 (44%), Gaps = 6/147 (4%)
Frame = +2
Query: 65 IESAKETLEEVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLNW 124
++ A+ E+ K+K+A+E +D L +EN + I + I +
Sbjct: 1232 LKDARSMSTEIFKMKNAYEES---------LDQLETLKRENKNLQQEISDLTEQISETGK 1384
Query: 125 EIIQAHQQARVIRENLNDIRRKRYFLKQAEGE------KALRIFTTVRKKKEVVRMKIAE 178
+ + + +++ + +D++ L++AEG K LRI + + K V KIAE
Sbjct: 1385 TVHELEKAKKLVEQEKSDLQAA---LEEAEGSLEHEESKILRIQLELNQLKSEVDRKIAE 1555
Query: 179 KLKFIHRNVQYERKVTTLVQNILQNII 205
K + I + + +++ +Q+ L + I
Sbjct: 1556 KDEEIEQLKRNSQRIIDTMQSTLDSEI 1636
>gb|AC005397.2|AC005397 Arabidopsis thaliana chromosome II section 245 of 255 of the complete
sequence. Sequence from clones F4I18, T3F17
Length = 102229
Score = 34.7 bits (78), Expect = 6.3
Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Frame = +1
Query: 54 EGCN-----SGAEVNFIESAKETLE-EVGKVKSAF----ESKALVIKRIQLMDALRKRVK 103
E CN + AE+ E + L E G V+S ES +IK + + + K
Sbjct: 75976 EACNVKCEDANAEMKMAEGSLNALRTEKGSVESNSNLQEESNGEIIKPCEAKENREQPAK 76155
Query: 104 EN---DGCARLIVETMRDIIKLNWEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALR 160
++ + AR+I R WE I+ ++ +RE + D++++ L+ + +
Sbjct: 76156 KSFTEEEAARIIQSMYRGYDVRRWEPIKKLKEIATVREQMGDVKKRIEALEASTDQH--- 76326
Query: 161 IFTTVRKKKEVVRMKIAEK--LKFIHRNVQYERKVTTLVQNILQNIIVGCQI 210
+ +K+ VV ++ LK V +ER ++ + ++ L ++ C+I
Sbjct: 76327 ----IEEKEIVVNGELVMNLLLKLDAVEVMHERLISLVGRDSLSQYVLLCRI 76470
>gb|AF400249.1|AF400249 Giardia intestinalis axoneme-associated protein GASP-180 gene,
complete cds
Length = 5504
Score = 34.7 bits (78), Expect = 6.3
Identities = 48/227 (21%), Positives = 92/227 (40%)
Frame = +3
Query: 4 RLSESVGSGPGAEAETAADPDAKRDVLEHLCARTHLKQLVMEFDTACPPDEGCNSGAEVN 63
RLSE + G + + + +L L ++ A D+G A+
Sbjct: 3810 RLSELLAEVEGYKTKLGESKEMVDSLLAQLASKDAELAGATTGLRAVTDDDGAEL-AKAR 3986
Query: 64 FIESAKETLEEVGKVKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLN 123
E E G++ + V K + DA R++E G R+ +ET
Sbjct: 3987 VASLENEVAELRGQLSAKLAEIDAVHKNLVDSDAEAARLREELGGLRVQLETA------- 4145
Query: 124 WEIIQAHQQARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVVRMKIAEKLKFI 183
++ + ++ R++ + L D R++ L+ A K + +R + ++A KL+
Sbjct: 4146 -QVPEDTERVRMLEDQLQDARKELAELRAALEAKEMET-EGLRAELATADPELANKLEAS 4319
Query: 184 HRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQLEKDIS 230
V+ R+ +Q+ L + + A D L+ ++ QLEKD+S
Sbjct: 4320 EATVRELRESAEALQDKLHAL----SDSRAADGDLQKLVEQLEKDLS 4448
>gb|AC004915.1|AC004915 Homo sapiens PAC clone RP5-888A21 from 7q31, complete sequence
Length = 122986
Score = 34.3 bits (77), Expect = 8.2
Identities = 24/91 (26%), Positives = 41/91 (44%)
Frame = -2
Query: 132 QARVIRENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVVRMKIAEKLKFIHRNVQYER 191
+AR I++ N I +Y+L + + IF KK+++ + R QYE+
Sbjct: 3642 KARSIKDEKNIITAFKYYLSRNRSSNSTHIFPITEKKEQLTFYSV--------RGSQYEK 3487
Query: 192 KVTTLVQNILQNIIVGCQINWAKDPSLRAII 222
K+ + N I V C+I K + +II
Sbjct: 3486 KIQSRCYNKNNEINVPCKILMQKP*AKYSII 3394
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 19, 2002 12:00 AM
Number of letters in database: 587,334,133
Number of sequences in database: 1,164,257
Lambda K H
0.320 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,100,407,615
Number of Sequences: 1164257
Number of extensions: 12870052
Number of successful extensions: 59222
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 29888
Number of HSP's successfully gapped in prelim test: 4223
Number of HSP's that attempted gapping in prelim test: 24478
Number of HSP's gapped (non-prelim): 43071
length of query: 235
length of database: 1,627,433,809
effective HSP length: 131
effective length of query: 104
effective length of database: 1,474,916,142
effective search space: 153391278768
effective search space used: 153391278768
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)