TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(1749 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,164,257 sequences; 587,334,133 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
gb|AF355273.1|AF355273 Gallus gallus breast and ovarian can... 3377 0.0
gb|AF207822.1|AF207822 Pan troglodytes BRCA1 (BRCA1) mRNA, ... 403 e-110
ref|NM_007299.1| Homo sapiens breast cancer 1, early onset ... 399 e-108
gb|U14680.1|HSU14680 Human breast and ovarian cancer suscep... 397 e-108
ref|NM_007294.1| Homo sapiens breast cancer 1, early onset ... 397 e-108
ref|NM_007296.1| Homo sapiens breast cancer 1, early onset ... 397 e-108
ref|NM_007295.1| Homo sapiens breast cancer 1, early onset ... 397 e-108
ref|NM_007301.1| Homo sapiens breast cancer 1, early onset ... 396 e-107
ref|NM_007300.1| Homo sapiens breast cancer 1, early onset ... 395 e-107
ref|NM_007306.1| Homo sapiens breast cancer 1, early onset ... 325 e-102
gb|AF005068.1|AF005068 Homo sapiens breast and ovarian canc... 295 e-100
ref|NM_007302.1| Homo sapiens breast cancer 1, early onset ... 371 e-100
gb|U36475.1|MMU36475 Mus musculus breast and ovarian cancer... 359 1e-96
gb|U68174.1|MMU68174 Mus musculus breast/ovarian cancer sus... 358 3e-96
ref|NM_012514.1| Rattus norvegicus Breast cancer 1 (Brca1),... 357 6e-96
gb|AF036760.1|AF036760 Rattus norvegicus BRCA1 mRNA, comple... 357 6e-96
gb|U31625.1|MMU31625 Mus musculus breast/ovarian cancer sus... 356 1e-95
gb|U32446.1|MMU32446 Mus musculus putative breast/ovarian c... 356 1e-95
gb|U35641.1|MMU35641 Mus musculus Brca1 mRNA, complete cds 353 1e-94
ref|NM_007298.1| Homo sapiens breast cancer 1, early onset ... 282 3e-73
ref|NM_007305.1| Homo sapiens breast cancer 1, early onset ... 281 6e-73
ref|NM_007297.1| Homo sapiens breast cancer 1, early onset ... 281 6e-73
ref|NM_007303.1| Homo sapiens breast cancer 1, early onset ... 281 6e-73
gb|U64805.1|HSU64805 Homo sapiens Brca1-delta11b (Brca1) mR... 279 2e-72
ref|NM_007304.1| Homo sapiens breast cancer 1, early onset ... 279 2e-72
gb|U68041.1|HSU68041 Human breast and ovarian cancer suscep... 271 4e-70
gb|U50709.1|CFU50709 Canis familiaris BRCA1 homolog gene, c... 269 2e-69
gb|AF416868.1|AF416868 Xenopus laevis breast and ovarian ca... 265 3e-68
gb|BC012577.1|BC012577 Homo sapiens, clone IMAGE:3996658, mRNA 245 4e-62
gb|AF284031.1|AF284031 Vombatus ursinus BRCA1 gene, partial... 211 7e-52
gb|AF019081.1| Cynocephalus variegatus breast and ovarian s... 193 1e-46
gb|AF019079.1|AF019079 Alouatta seniculus breast and ovaria... 180 1e-42
gb|AF019078.1|AF019078 Macaca mulatta breast and ovarian ca... 180 1e-42
gb|S82500.1|S82500 Rattus norvegicus Brca1 (Brca1) gene, pa... 179 2e-42
gb|U60523.1|RNU60523 Rattus norvegicus Brca1 mRNA, partial cds 179 2e-42
gb|AF019080.1| Otolemur crassicaudatus breast and ovarian c... 177 7e-42
gb|AF332047.1|AF332047 Pedetes capensis BRCA1 (BRCA1) gene,... 174 1e-40
gb|AF019076.1|AF019076 Gorilla gorilla breast and ovarian c... 173 1e-40
gb|AF019075.1|AF019075 Pan troglodytes breast and ovarian c... 173 2e-40
gb|AF355794.1|AF355794 Caenolestes fuliginosus BRCA1 gene, ... 173 2e-40
gb|L78833.1|HUMBRCA1 Human BRCA1, Rho7 and vatI genes, comp... 169 2e-39
gb|AF284030.1|AF284030 Orycteropus afer BRCA1 gene, partial... 167 9e-39
gb|AF332046.1|AF332046 Graphiurus murinus BRCA1 (BRCA1) gen... 167 9e-39
gb|AF284000.1|AF284000 Chaetophractus villosus BRCA1 gene, ... 166 2e-38
gb|AF019077.1|AF019077 Pongo pygmaeus breast and ovarian ca... 166 2e-38
gb|AF284002.1|AF284002 Bradypus tridactylus BRCA1 gene, par... 166 3e-38
gb|AF284019.1|AF284019 Dugong dugon BRCA1 gene, partial cds 165 5e-38
gb|AF284020.1|AF284020 Trichechus manatus BRCA1 gene, parti... 164 8e-38
gb|AF284001.1|AF284001 Tamandua tetradactyla BRCA1 gene, pa... 162 2e-37
gb|AF284014.1|AF284014 Sus scrofa BRCA1 gene, partial cds 157 1e-35
gb|AF284027.1|AF284027 Amblysomus hottentotus BRCA1 gene, p... 156 2e-35
gb|AF284011.1|AF284011 Diceros bicornis BRCA1 gene, partial... 155 4e-35
gb|AF284012.1|AF284012 Lama glama BRCA1 gene, partial cds 154 6e-35
gb|AF284003.1|AF284003 Glaucomys volans BRCA1 gene, partial... 154 1e-34
gb|AF284021.1|AF284021 Loxodonta africana BRCA1 gene, parti... 152 4e-34
gb|AF284010.1|AF284010 Equus caballus BRCA1 gene, partial cds 151 5e-34
gb|AF284029.1|AF284029 Rhynchocyon sp. BRCA1 gene, partial cds 150 9e-34
gb|AF283999.1|AF283999 Dasypus novemcinctus BRCA1 gene, par... 149 3e-33
gb|AF203752.1|AF203752 Hipposideros commersoni Brca1 (Brca1... 148 6e-33
emb|AL590996.12|AL590996 Mouse DNA sequence from clone RP23... 144 7e-32
gb|AF284022.1|AF284022 Elephas maximus BRCA1 gene, partial cds 144 1e-31
gb|BC003248.1|BC003248 Mus musculus, clone IMAGE:3498707, m... 144 1e-31
gb|AF332048.1|AF332048 Meriones shawi BRCA1 (BRCA1) gene, p... 143 1e-31
gb|AF332043.1|AF332043 Oryzomys couesi BRCA1 (BRCA1) gene, ... 142 4e-31
gb|AY057830.1| Tapirus pinchaque BRCA1 (BRCA1) gene, partia... 141 6e-31
gb|AF332044.1|AF332044 Sciurus niger BRCA1 (BRCA1) gene, pa... 140 9e-31
gb|AY057827.1| Ochotona princeps BRCA1 (BRCA1) gene, partia... 138 5e-30
gb|AF355795.1|AF355795 Phascogale tapoatafa BRCA1 gene, par... 137 1e-29
gb|AY057825.1| Sotalia fluviatilis BRCA1 (BRCA1) gene, part... 136 2e-29
gb|AF203747.1|AF203747 Tadarida brasiliensis Brca1 (Brca1) ... 136 2e-29
gb|AF284018.1|AF284018 Felis catus BRCA1 gene, partial cds 136 2e-29
gb|AF284008.1|AF284008 Erinaceus europaeus BRCA1 gene, part... 135 3e-29
gb|AF203746.1|AF203746 Myotis daubentoni Brca1 (Brca1) gene... 135 4e-29
gb|AF355796.1|AF355796 Echymipera kalubu BRCA1 gene, partia... 135 5e-29
gb|AY057829.1| Rousettus amplexicaudatus BRCA1 (BRCA1) gene... 134 7e-29
gb|AF284007.1|AF284007 Scalopus aquaticus BRCA1 gene, parti... 131 6e-28
gb|AF284023.1|AF284023 Procavia capensis BRCA1 gene, partia... 131 7e-28
gb|AY057828.1| Sorex araneus BRCA1 (BRCA1) gene, partial cds 131 7e-28
gb|AF284017.1|AF284017 Megaptera novaeangliae BRCA1 gene, p... 130 1e-27
gb|AF284024.1|AF284024 Dendrohyrax dorsalis BRCA1 gene, par... 128 6e-27
gb|AF284006.1|AF284006 Tupaia tana BRCA1 gene, partial cds 127 1e-26
gb|AF284015.1|AF284015 Hippopotamus amphibius BRCA1 gene, p... 127 1e-26
gb|AF284009.1|AF284009 Manis sp. BRCA1 gene, partial cds 127 1e-26
gb|AY057826.1| Lutreolina crassicaudata BRCA1 (BRCA1) gene,... 123 2e-25
gb|AF332045.1|AF332045 Aplodontia rufa BRCA1 (BRCA1) gene, ... 123 2e-25
gb|AF284016.1|AF284016 Physeter catodon BRCA1 gene, partial... 123 2e-25
gb|AF284028.1|AF284028 Elephantulus rufescens BRCA1 gene, p... 119 4e-24
gb|AF284005.1|AF284005 Lepus capensis BRCA1 gene, partial cds 115 3e-23
gb|AF284026.1|AF284026 Tenrec ecaudatus BRCA1 gene, partial... 114 7e-23
gb|AF203748.1|AF203748 Taphozous sp. Brca1 (Brca1) gene, pa... 111 8e-22
gb|AF203751.1|AF203751 Pteropus rayneri Brca1 (Brca1) gene,... 106 3e-20
gb|AF284013.1|AF284013 Bos taurus BRCA1 gene, partial cds 98 7e-18
gb|AF203749.1|AF203749 Megaderma lyra Brca1 (Brca1) gene, p... 89 3e-15
gb|AF284025.1|AF284025 Echinops telfairi BRCA1 gene, partia... 89 6e-15
ref|NM_100283.1| Arabidopsis thaliana chromosome 1 CHR1v12... 85 6e-14
gb|AF284033.1|AF284033 Macropus rufus BRCA1 gene, partial cds 81 9e-13
ref|NM_118225.1| Arabidopsis thaliana chromosome 4 CHR4v12... 80 2e-12
gb|AF203750.1|AF203750 Cynopterus sphinx Brca1 (Brca1) gene... 77 2e-11
gb|AF284004.1|AF284004 Hystrix africaeaustralis BRCA1 gene,... 72 5e-10
dbj|AB023055.1|AB023055 Homo sapiens genomic DNA, chromosom... 69 5e-09
dbj|AB023054.1|AB023054 Homo sapiens genomic DNA, chromosom... 69 5e-09
ref|NM_065379.1| Zinc finger, C3HC4 type (RING finger) 69 5e-09
gb|AC004202.1|AC004202 Homo sapiens clone UWGC:y2c224 from ... 69 5e-09
dbj|AP000518.1|AP000518 Homo sapiens genomic DNA, chromosom... 69 5e-09
gb|BC017017.1|BC017017 Homo sapiens, Similar to tripartite ... 69 5e-09
ref|XM_004547.4| Homo sapiens tripartite motif-containing 3... 69 5e-09
ref|NM_052816.1| Homo sapiens tripartite motif-containing 3... 67 2e-08
ref|NM_007028.2| Homo sapiens tripartite motif-containing 3... 67 2e-08
gb|AF230386.1|AF230386 Homo sapiens tripartite motif protei... 65 5e-08
gb|U33835.1|MMU33835 Mus musculus breast and ovarian cancer... 65 5e-08
gb|AF230387.1|AF230387 Homo sapiens tripartite motif protei... 65 5e-08
emb|Y07828.1|HSRINGR H.sapiens mRNA for RING protein 65 5e-08
gb|AF234782.1|AF234782 Rattus norvegicus BRCA1 mRNA, partia... 64 1e-07
gb|AC091507.2|AC091507 Sus scrofa clone RP44-397B10, comple... 62 4e-07
gb|AF284032.1|AF284032 Lutreolina crassicaudata BRCA1 gene,... 60 2e-06
gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb2... 60 2e-06
ref|NM_123795.1| Arabidopsis thaliana chromosome 5 CHR5v12... 60 3e-06
gb|AF120281.1|AF120281 Sus scrofa BRCA1 protein (BRCA1) gen... 60 3e-06
gb|BC005447.1|BC005447 Mus musculus, clone MGC:6159 IMAGE:3... 59 4e-06
gb|AF220015.1|AF220015 Mus musculus tripartite motif protei... 58 8e-06
gb|AC092727.2| Bos taurus clone RP42-351K5, complete sequence 58 8e-06
gb|AF220014.1|AF220014 Mus musculus tripartite motif protei... 58 8e-06
gb|AF220016.1|AF220016 Mus musculus tripartite motif protei... 58 8e-06
emb|AJ251829.1|SSC251829 Sus scrofa MHC class I SLA genomic... 58 8e-06
ref|NM_009099.1| Mus musculus tripartite motif protein 30 (... 58 8e-06
gb|J03776.1|MUSRPT1 Mouse down regulatory protein (rpt-1r) ... 58 8e-06
ref|NM_009277.1| Mus musculus tripartite motif protein 21 (... 58 1e-05
gb|L27990.1|MUSROP Mus musculus Ro protein mRNA, complete cds 58 1e-05
ref|XM_091412.1| Homo sapiens similar to tripartite motif p... 58 1e-05
gb|BC010580.1|BC010580 Mus musculus, Sjogren syndrome antig... 58 1e-05
ref|NM_024596.1| Homo sapiens hypothetical protein FLJ12847... 58 1e-05
dbj|AK022909.1|AK022909 Homo sapiens cDNA FLJ12847 fis, clo... 58 1e-05
gb|AC018737.9| Homo sapiens BAC clone RP11-416H1 from 2, co... 56 3e-05
dbj|AK005854.1|AK005854 Mus musculus adult male testis cDNA... 56 3e-05
gb|AC103565.1| Caenorhabditis briggsae cosmid CB019K16, com... 56 3e-05
gb|AC087262.2| Rattus norvegicus clone RP31-151E23 strain B... 56 3e-05
ref|NM_026205.1| Mus musculus RIKEN cDNA 1700010O16 gene (1... 56 3e-05
dbj|AK005850.1|AK005850 Mus musculus adult male testis cDNA... 56 3e-05
ref|XM_015680.4| Homo sapiens hypothetical protein FLJ12847... 56 3e-05
ref|NM_006074.2| Homo sapiens tripartite motif-containing 2... 56 4e-05
gb|U13657.1|HSROSSA1 Human 52 kD Ro/SSA autoantigen (RO52) ... 56 4e-05
ref|XM_015243.2| Homo sapiens tripartite motif-containing 2... 56 4e-05
gb|AC009758.8| Homo sapiens chromosome 11, clone RP11-101E4... 56 4e-05
gb|M34551.1|HUMROSSA Human 52-kD ribonucleoprotein Ro/SSA m... 56 4e-05
emb|Z49834.1|ANNUVAMR A.nidulans nuvA mRNA for NUVA 56 4e-05
gb|AF391283.1|AF391283 Homo sapiens 11p15.5 clone LOH11A, p... 56 4e-05
gb|BC010861.1|BC010861 Homo sapiens, clone MGC:9233 IMAGE:3... 56 4e-05
gb|AF101874.4|AF101874 Homo sapiens clone pTWB9n12.11T7 seq... 56 4e-05
gb|U01882.1|HSU01882 Homo sapiens SS-A/Ro autoantigen 52 kd... 56 4e-05
emb|Z49875.1|ANL20NUVA A.nidulans nuvA gene 56 4e-05
emb|AL033391.1|CAC20C1 C.albicans cosmid Ca20C1 56 4e-05
emb|X82200.1|HSSTAF50 H.sapiens Staf50 mRNA 56 4e-05
emb|AL360187.1|HST000229 Homo sapiens mRNA full length inse... 56 4e-05
ref|NM_003141.2| Homo sapiens Sjogren syndrome antigen A1 (... 56 4e-05
dbj|AK057366.1|AK057366 Homo sapiens cDNA FLJ32804 fis, clo... 56 4e-05
gb|AF203745.1|AF203745 Tonatia bidens Brca1 (Brca1) gene, p... 56 4e-05
gb|S79392.1|S79392 uvsH=DNA repair/zinc finger protein [Eme... 56 4e-05
gb|BC022281.1| Homo sapiens, clone IMAGE:4718024, mRNA 56 4e-05
gb|AF230395.1|AF230395 Mus musculus tripartite motif protei... 55 7e-05
ref|NM_030698.4| Mus musculus tripartite motif protein 26 (... 55 7e-05
gb|AF230396.1|AF230396 Mus musculus tripartite motif protei... 55 7e-05
gb|AF196346.1|AF196346 Danio rerio Ring finger protein 1b (... 55 7e-05
gb|AC074359.2| Mus musculus chromosome 5 clone RP23-289J24 ... 55 9e-05
emb|Z66495.1|CEC36A4 Caenorhabditis elegans cosmid C36A4, c... 55 9e-05
gb|AC024608.4| Mus musculus chromosome 5 clone RP23-333I24 ... 55 9e-05
gb|AC004186.1|AC004186 Homo sapiens clone UWGC:y17c054 from... 54 1e-04
ref|NM_003449.2| Homo sapiens tripartite motif-containing 2... 54 1e-04
ref|XM_084540.1| Homo sapiens similar to 52kD Ro/SSA autoan... 54 1e-04
dbj|AP000517.1|AP000517 Homo sapiens genomic DNA, chromosom... 54 1e-04
ref|NM_101724.1| Arabidopsis thaliana chromosome 1 CHR1v12... 54 1e-04
emb|AL662832.5|AL662832 Human DNA sequence from clone XXbac... 54 1e-04
ref|NM_033034.1| Homo sapiens tripartite motif-containing 5... 54 1e-04
dbj|AK027593.1|AK027593 Homo sapiens cDNA FLJ14687 fis, clo... 54 1e-04
gb|U09825.1|HSU09825 Human acid finger protein mRNA, comple... 54 1e-04
ref|XM_006063.8| Homo sapiens SSA protein SS-56 (SS-56), mRNA 54 2e-04
ref|NM_016271.1| Homo sapiens STRIN protein (STRIN), mRNA 54 2e-04
gb|AF162680.3|AF162680 Homo sapiens HSD-4 protein (HSD-4) m... 54 2e-04
gb|AC090719.8| Homo sapiens chromosome 11, clone RP11-648B1... 54 2e-04
ref|NM_018073.4| Homo sapiens SSA protein SS-56 (SS-56), mRNA 54 2e-04
gb|AF439153.1|AF439153 Homo sapiens Ro/SSA1 related protein... 54 2e-04
gb|AF360739.1|AF360739 Homo sapiens SSA protein SS-56 (SS-5... 54 2e-04
ref|XM_059810.2| Homo sapiens similar to similar to RFP tra... 54 2e-04
gb|AC073841.9| Homo sapiens BAC clone RP11-483G21 from 7, c... 54 2e-04
gb|BC018107.1|BC018107 Homo sapiens, clone MGC:8758 IMAGE:3... 54 2e-04
gb|AF394913.1|AF394913 Rosa hybrid cultivar photoregulatory... 54 2e-04
gb|BC003712.1|BC003712 Mus musculus, Trif gene, clone MGC:5... 54 2e-04
dbj|AK012358.1|AK012358 Mus musculus 11 days embryo whole b... 54 2e-04
ref|NM_019706.1| Mus musculus Trif gene (Trif-pending), mRNA 54 2e-04
dbj|AB025011.1|AB025011 Mus musculus mRNA for Trif-d, compl... 54 2e-04
ref|NM_033093.1| Homo sapiens tripartite motif-containing 5... 54 2e-04
ref|NM_007212.1| Homo sapiens ring finger protein 2 (RNF2),... 54 2e-04
gb|AF141327.1|AF141327 Homo sapiens ring finger protein BAP... 54 2e-04
dbj|AK004238.1|AK004238 Mus musculus 18 days embryo whole b... 54 2e-04
dbj|AB040053.1|AB040053 Oryza sativa subsp. japonica rCOP1 ... 54 2e-04
gb|AF220029.1|AF220029 Homo sapiens tripartite motif protei... 54 2e-04
dbj|AK010486.1|AK010486 Mus musculus ES cells cDNA, RIKEN f... 54 2e-04
ref|XM_085412.1| Homo sapiens similar to RIKEN cDNA 1700010... 54 2e-04
ref|NM_033092.1| Homo sapiens tripartite motif-containing 5... 54 2e-04
gb|BC020770.1|BC020770 Homo sapiens, Similar to tripartite ... 54 2e-04
gb|AF220027.1|AF220027 Homo sapiens tripartite motif protei... 54 2e-04
gb|AF220028.1|AF220028 Homo sapiens tripartite motif protei... 54 2e-04
dbj|AK013124.1|AK013124 Mus musculus 10, 11 days embryo who... 54 2e-04
dbj|AB025010.1|AB025010 Mus musculus mRNA for Trif, complet... 54 2e-04
ref|NM_053588.1| Rattus norvegicus Trif gene (Trif-pending)... 54 2e-04
gb|AF220026.1|AF220026 Homo sapiens tripartite motif protei... 54 2e-04
gb|AF220025.1|AF220025 Homo sapiens tripartite motif protei... 54 2e-04
gb|AF315468.1|AF315468 Rattus norvegicus RSD-4 mRNA, comple... 54 2e-04
gb|AF290197.1|AF290197 Mus musculus RING finger protein 33 ... 54 2e-04
ref|XM_001741.3| Homo sapiens ring finger protein 2 (RNF2),... 54 2e-04
gb|BC020122.1|BC020122 Mus musculus, ring finger protein 2,... 54 2e-04
gb|BC012583.1|BC012583 Homo sapiens, Similar to ring finger... 54 2e-04
emb|Y12880.1|MMY12880 Mus musculus mRNA for polycomb-M33 in... 54 2e-04
gb|BC021258.1|BC021258 Homo sapiens, tripartite motif-conta... 54 2e-04
emb|Y10571.1|HSDING H.sapiens mRNA for dinG gene 54 2e-04
dbj|AK056523.1|AK056523 Homo sapiens cDNA FLJ31961 fis, clo... 54 2e-04
dbj|AK013419.1|AK013419 Mus musculus 10, 11 days embryo who... 53 3e-04
gb|AY060824.1| Drosophila melanogaster GM01182 full length ... 53 3e-04
emb|AL391121.29|AL391121 Human DNA sequence from clone RP11... 53 3e-04
ref|XM_081374.1| CG10981, mRNA 53 3e-04
ref|NM_053100.1| Mus musculus tripartite motif protein 8 (T... 53 3e-04
gb|AY058535.1| Drosophila melanogaster LD23953 full length ... 53 3e-04
gb|AF281047.1|AF281047 Mus musculus domesticus glioblastoma... 53 3e-04
gb|AE003601.2|AE003601 Drosophila melanogaster genomic scaf... 53 3e-04
gb|AE003762.2|AE003762 Drosophila melanogaster genomic scaf... 53 3e-04
emb|AJ001514.1|DMDRING Drosophila melanogaster mRNA for DRI... 53 3e-04
gb|AC011252.4|AC011252 Drosophila melanogaster, chromosome ... 53 3e-04
ref|XM_096414.1| Homo sapiens region containing ; ring fing... 53 3e-04
ref|NM_009066.1| Mus musculus ring finger protein 1 (Ring1)... 53 3e-04
emb|Y12881.1|MMY12881 Mus musculus mRNA for transcription r... 53 3e-04
ref|NM_030912.1| Homo sapiens ring finger protein 27 (RNF27... 53 3e-04
gb|AF281046.1|AF281046 Homo sapiens glioblastoma-expressed ... 53 3e-04
gb|AC008311.3|AC008311 Drosophila melanogaster, chromosome ... 53 3e-04
ref|NG_000825.1| Drosophila melanogaster (Ring) on chromos... 53 3e-04
gb|AC007818.7|AC007818 Drosophila melanogaster, chromosome ... 53 3e-04
ref|NM_002931.2| Homo sapiens ring finger protein 1 (RING1)... 53 3e-04
emb|Z14000.1|HSRING1 H.sapiens RING1 gene 53 3e-04
gb|AF220034.1|AF220034 Homo sapiens tripartite motif protei... 53 3e-04
gb|M62800.1|HUMSSARO Human 52-kD SS-A/Ro autoantigen mRNA, ... 53 3e-04
ref|NM_058161.1| Drosophila melanogaster (Ring), transcrip... 53 3e-04
gb|BC021925.1|BC021925 Homo sapiens, ring finger protein 27... 53 3e-04
emb|AJ335896.1|HSA335896 Homo sapiens genomic sequence surr... 53 3e-04
emb|AJ334588.1|HSA334588 Homo sapiens genomic sequence surr... 53 3e-04
emb|AL360160.1|HST000217 Homo sapiens mRNA full length inse... 53 3e-04
gb|BC002922.1|BC002922 Homo sapiens, ring finger protein 1,... 53 3e-04
gb|AC084851.2| Homo sapiens chromosome 11, clone CTD-2132H1... 52 4e-04
gb|AF220030.1|AF220030 Homo sapiens tripartite motif protei... 52 4e-04
ref|NM_028842.1| Mus musculus RIKEN cDNA 1700045I19 gene (1... 52 4e-04
dbj|AK006700.1|AK006700 Mus musculus adult male testis cDNA... 52 4e-04
gb|AC005700.2|AC005700 Arabidopsis thaliana chromosome II s... 52 4e-04
ref|XM_012034.3| Homo sapiens similar to ring finger protei... 52 4e-04
ref|XM_044478.3| Homo sapiens tripartite motif-containing 3... 52 4e-04
ref|XM_016444.1| Homo sapiens similar to ring finger protei... 52 4e-04
dbj|AK027664.1|AK027664 Homo sapiens cDNA FLJ14758 fis, clo... 52 4e-04
ref|NM_058166.2| Homo sapiens tripartite motif-containing 6... 52 4e-04
ref|XM_062300.1| Homo sapiens similar to ring finger protei... 52 6e-04
ref|XM_093996.1| Homo sapiens similar to ring finger protei... 52 6e-04
ref|NM_022798.1| Rattus norvegicus RING finger protein terf... 52 6e-04
gb|AF156272.1|AF156272 Rattus norvegicus RING finger protei... 52 6e-04
gb|AC027369.8| Homo sapiens chromosome , clone RP11-56P9, c... 52 6e-04
emb|Y07829.2|HSRINGG Homo sapiens RFB30 gene for RING finge... 52 8e-04
gb|AC013258.5|AC013258 Arabidopsis thaliana chromosome 1 BA... 52 8e-04
gb|AF220024.1|AF220024 Homo sapiens tripartite motif protei... 52 8e-04
ref|NM_106156.1| Arabidopsis thaliana chromosome 1 CHR1v12... 52 8e-04
ref|NG_000004.1| Homo sapiens genomic cytochrome P450, subf... 52 8e-04
ref|NM_130390.1| Homo sapiens tripartite motif-containing 3... 52 8e-04
dbj|AB039902.1|AB039902 Homo sapiens ifp1 mRNA for interfer... 52 8e-04
ref|XM_069474.1| Homo sapiens similar to tripartite motif p... 52 8e-04
gb|AF220144.1|AF220144 Homo sapiens tripartite motif protei... 52 8e-04
gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F... 52 8e-04
gb|AF220143.1|AF220143 Homo sapiens tripartite motif protei... 52 8e-04
ref|NM_130389.1| Homo sapiens tripartite motif-containing 3... 52 8e-04
gb|AC011904.3|AC011904 Homo sapiens BAC clone CTD-3244O18 f... 52 8e-04
gb|BC011763.1|BC011763 Homo sapiens, Similar to tripartite ... 52 8e-04
ref|NM_021616.3| Homo sapiens tripartite motif-containing 3... 52 8e-04
dbj|AB039904.1|AB039904 Homo sapiens ifp1 mRNA for interfer... 52 8e-04
dbj|AB039903.1|AB039903 Homo sapiens ifp1 mRNA for interfer... 52 8e-04
ref|NM_033091.1| Homo sapiens tripartite motif-containing 4... 52 8e-04
gb|AC004977.2|AC004977 Homo sapiens PAC clone RP5-1152C17 f... 52 8e-04
ref|NM_122181.1| Arabidopsis thaliana chromosome 5 CHR5v12... 52 8e-04
dbj|AK027876.1|AK027876 Homo sapiens cDNA FLJ14970 fis, clo... 52 8e-04
dbj|AB005245.2|AB005245 Arabidopsis thaliana genomic DNA, c... 52 8e-04
ref|NM_120595.1| Arabidopsis thaliana chromosome 5 CHR5v12... 52 8e-04
gb|AF220023.1|AF220023 Homo sapiens tripartite motif protei... 52 8e-04
ref|NM_023835.1| Mus musculus tripartite motif protein 12 (... 52 8e-04
ref|NM_033017.2| Homo sapiens tripartite motif-containing 4... 52 8e-04
gb|AF220126.1|AF220126 Mus musculus tripartite motif protei... 52 8e-04
dbj|AK009769.1|AK009769 Mus musculus adult male tongue cDNA... 52 8e-04
emb|AL139288.15|AL139288 Human DNA sequence from clone RP5-... 51 0.001
emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome... 51 0.001
gb|AC008784.7| Homo sapiens chromosome 5 clone CTD-2028D11,... 51 0.001
dbj|AB014086.1|AB014086 Homo sapiens genomic DNA, chromosom... 51 0.001
gb|AY046033.1| Arabidopsis thaliana putative RING zinc fing... 51 0.001
emb|AL662795.5|AL662795 Human DNA sequence from clone XXbac... 51 0.001
gb|BC007661.1|BC007661 Homo sapiens, Similar to ring finger... 51 0.001
gb|BC023999.1| Homo sapiens, tripartite motif-containing 17... 51 0.001
ref|NM_016102.1| Homo sapiens tripartite motif-containing 1... 51 0.001
gb|AF156271.1|AF156271 Homo sapiens RING finger protein ter... 51 0.001
dbj|AB015468.1|AB015468 Arabidopsis thaliana genomic DNA, c... 51 0.001
ref|NM_021253.1| Homo sapiens ring finger protein 23 (RNF23... 51 0.001
dbj|AB046381.1|AB046381 Homo sapiens mRNA for testis-abunda... 51 0.001
ref|XM_044477.3| Homo sapiens similar to tripartite motif-c... 51 0.001
gb|AC004188.1|AC004188 Homo sapiens clone UWGC:y17c090 from... 51 0.001
dbj|AP000516.1|AP000516 Homo sapiens genomic DNA, chromosom... 51 0.001
dbj|AK055426.1|AK055426 Homo sapiens cDNA FLJ30864 fis, clo... 51 0.001
ref|NM_124242.1| Arabidopsis thaliana chromosome 5 CHR5v12... 51 0.001
ref|NM_115665.1| Arabidopsis thaliana chromosome 3 CHR3v12... 51 0.001
ref|NM_024468.1| Mus musculus ring finger protein 23 (Rnf23... 51 0.001
dbj|AB046382.1|AB046382 Mus musculus mRNA for testis-abunda... 51 0.001
ref|NM_128855.1| Arabidopsis thaliana chromosome 2 CHR2v12... 51 0.001
gb|U90439.2|U90439 Arabidopsis thaliana chromosome II secti... 51 0.001
gb|AY072117.1| Arabidopsis thaliana putative RING zinc fing... 51 0.001
gb|AY058184.1| Arabidopsis thaliana At2g42030/T6D20.8 mRNA,... 51 0.001
ref|NM_129766.1| Arabidopsis thaliana chromosome 2 CHR2v12... 51 0.001
gb|L04190.1|SMRPWA33A Pleurodeles waltlii Zn-binding protei... 51 0.001
gb|AF265664.1|AF265664 Solanum tuberosum resistance gene cl... 51 0.001
gb|L24437.1|ATHCOP1A Arabidopsis thaliana (COP1) regulatory... 51 0.001
ref|XM_093998.1| Homo sapiens similar to ring finger protei... 51 0.001
emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome... 50 0.002
gb|AF071527.1|AF071527 Arabidopsis thaliana BAC F9H3, from ... 50 0.002
ref|NM_053168.1| Mus musculus tripartite motif protein 11 (... 50 0.002
gb|BC009070.1|BC009070 Mus musculus, ring finger protein 1,... 50 0.002
gb|AF220124.1|AF220124 Mus musculus tripartite motif protei... 50 0.002
ref|NM_116589.1| Arabidopsis thaliana chromosome 4 CHR4v12... 50 0.002
gb|BC020102.1|BC020102 Mus musculus, Similar to tripartite ... 50 0.002
dbj|AB008518.1|AB008518 Arabidopsis thaliana RMA1 mRNA, com... 50 0.002
ref|NM_111600.1| Arabidopsis thaliana chromosome 3 CHR3v12... 50 0.002
emb|AJ325069.1|HSA325069 Homo sapiens genomic sequence surr... 50 0.002
ref|NM_012210.2| Homo sapiens tripartite motif-containing 3... 50 0.002
gb|U18543.1|HSU18543 Human zinc-finger protein mRNA, comple... 50 0.002
dbj|AP003734.3|AP003734 Oryza sativa genomic DNA, chromosom... 50 0.002
gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome II... 50 0.002
gb|U96166.2|SCU96166 Streptococcus crista ATP-binding casse... 50 0.002
gb|AF220121.1|AF220121 Mus musculus tripartite motif protei... 50 0.002
ref|NM_003071.1| Homo sapiens SWI/SNF related, matrix assoc... 50 0.002
gb|L34673.1|HUMHIP116A Human ATPase, DNA-binding protein (H... 50 0.002
emb|Z46606.1|HSHLTF1 H.sapiens HLTF gene for helicase-like ... 50 0.002
ref|NM_011280.1| Mus musculus tripartite motif protein 10 (... 50 0.002
gb|AF134811.1|AF134811 Mus musculus hematopoietic RING fing... 50 0.002
ref|XM_046292.3| Homo sapiens similar to hypothetical prote... 50 0.002
gb|AF289544.1|AF289544 Oryza sativa copI gene, complete cds 50 0.002
dbj|AK011082.1|AK011082 Mus musculus 13 days embryo liver c... 50 0.002
gb|AE003407.1|DROSADH01 Drosophila melanogaster, chromosome... 50 0.003
gb|U91328.1|HSU91328 Human hereditary haemochromatosis regi... 50 0.003
gb|BC015353.1|BC015353 Homo sapiens, clone MGC:21446 IMAGE:... 50 0.003
emb|AJ276591.1|PSA276591 Pisum sativum cop1 gene for consti... 50 0.003
emb|AJ276592.1|PSA276592 Pisum sativum lip1 mutant cop1 gen... 50 0.003
ref|NM_018207.1| Homo sapiens hypothetical protein FLJ10759... 50 0.003
gb|AE003641.1|AE003641 Drosophila melanogaster genomic scaf... 50 0.003
dbj|AK001621.1|AK001621 Homo sapiens cDNA FLJ10759 fis, clo... 50 0.003
gb|AC009237.3| Homo sapiens BAC clone RP11-440D17 from 2, c... 50 0.003
gb|AC092236.1|AC092236 Drosophila melanogaster, chromosome ... 50 0.003
ref|XM_001764.5| Homo sapiens similar to hypothetical prote... 50 0.003
dbj|AK016522.1|AK016522 Mus musculus adult male testis cDNA... 50 0.003
gb|BC012152.1|BC012152 Homo sapiens, clone MGC:20370 IMAGE:... 50 0.003
gb|BC007999.1|BC007999 Homo sapiens, hypothetical protein F... 50 0.003
gb|BC001222.1|BC001222 Homo sapiens, hypothetical protein F... 50 0.003
gb|BC021115.1|BC021115 Homo sapiens, Similar to tripartite ... 50 0.003
gb|U90547.1|HSU90547 Human Ro/SSA ribonucleoprotein homolog... 50 0.003
ref|NM_006355.1| Homo sapiens ring finger protein 15 (RNF15... 50 0.003
ref|XM_059379.1| Homo sapiens similar to ring finger protei... 50 0.003
ref|XM_059381.1| Homo sapiens similar to ring finger protei... 50 0.003
gb|BC011689.1|BC011689 Homo sapiens, clone MGC:19672 IMAGE:... 50 0.003
gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis tha... 49 0.004
gb|AY057705.1| Arabidopsis thaliana At1g19310/F18O14_14 mRN... 49 0.004
gb|AF284812.1|AF284812 Homo sapiens BRCAI (BRCA1) gene, exo... 49 0.004
ref|XM_008732.4| Homo sapiens hypothetical protein FLJ20456... 49 0.004
ref|NM_017831.1| Homo sapiens hypothetical protein FLJ20456... 49 0.004
dbj|AK000463.1|AK000463 Homo sapiens cDNA FLJ20456 fis, clo... 49 0.004
ref|NM_101788.1| Arabidopsis thaliana chromosome 1 CHR1v12... 49 0.004
gb|BC012021.1|BC012021 Homo sapiens, clone MGC:21737 IMAGE:... 49 0.004
gb|S80988.1|S80988 xnf7-O=nuclear factor 7 [Xenopus laevis,... 49 0.004
gb|AC021488.5| Homo sapiens chromosome 11, clone RP11-77F24... 49 0.004
gb|AC006014.2|AC006014 Homo sapiens PAC clone RP5-953A4 fro... 49 0.004
emb|AL365214.16|AL365214 Human DNA sequence from clone RP11... 49 0.004
ref|NM_024114.1| Homo sapiens hypothetical protein MGC4827 ... 49 0.004
gb|BC001862.1|BC001862 Homo sapiens, clone MGC:4827 IMAGE:3... 49 0.004
dbj|AK016103.1|AK016103 Mus musculus adult male testis cDNA... 49 0.004
dbj|AB060918.1|AB060918 Macaca fascicularis brain cDNA clon... 49 0.004
ref|XM_017350.1| Homo sapiens similar to hypothetical prote... 49 0.004
gb|AC003033.2|AC003033 Arabidopsis thaliana chromosome II s... 49 0.005
gb|U67953.1| Caenorhabditis elegans cosmid ZC13, complete s... 49 0.005
emb|AL133284.13|AL133284 Human DNA sequence from clone RP11... 49 0.005
gb|AF010138.1|AF010138 Mus musculus transcription factor (P... 49 0.005
gb|AF315714.1|AF315714 Ipomoea nil COP1 mRNA, complete cds 49 0.005
ref|NM_009210.1| Mus musculus SWI/SNF related, matrix assoc... 49 0.005
gb|AF165911.1|AF165911 Mus musculus helicase-like transcrip... 49 0.005
gb|AF010600.1|AF010600 Mus musculus TNF-response element bi... 49 0.005
ref|XM_069216.1| Homo sapiens similar to ret finger protein... 49 0.005
gb|AC036111.7| Homo sapiens chromosome 11, clone RP11-738O1... 49 0.005
ref|XM_005335.5| Homo sapiens tripartite motif-containing 3... 49 0.005
gb|BC003154.1|BC003154 Homo sapiens, TAT-INTERACTIVE PROTEI... 49 0.005
emb|AJ289773.1|PSA289773 Pisum sativum mRNA for COP1 regula... 49 0.006
gb|U63818.1|XLU63818 Xenopus laevis RING finger protein mRN... 49 0.006
gb|AF029984.1|AF029984 Lycopersicon esculentum COP1 homolog... 49 0.006
dbj|AK013959.1|AK013959 Mus musculus 13 days embryo head cD... 49 0.006
emb|AJ289774.1|PSA289774 Pisum sativum mRNA for COP1 regula... 49 0.006
emb|Y09579.1|PSCOP1PRT P.sativum mRNA for Cop1 protein 49 0.006
ref|XM_084193.1| Homo sapiens similar to tripartite motif-c... 48 0.008
gb|U66565.1|OCU66565 Oryctolagus cuniculus RUSH-1beta mRNA,... 48 0.008
gb|AF220123.1|AF220123 Homo sapiens tripartite motif protei... 48 0.008
gb|U66564.1|OCU66564 Oryctolagus cuniculus RUSH-1alpha mRNA... 48 0.008
ref|XM_092184.1| Homo sapiens similar to putative (LOC16483... 48 0.008
ref|NM_052828.1| Homo sapiens ring finger protein 9 (RNF9),... 48 0.008
emb|AJ224819.1|HSAJ4819 Homo sapiens mRNA for candidate tum... 48 0.008
gb|U48717.1|CPU48717 Cryptosporidium parvum zinc finger pro... 48 0.008
dbj|AP003437.3|AP003437 Oryza sativa genomic DNA, chromosom... 48 0.008
ref|XM_041688.2| Homo sapiens tripartite motif-containing 1... 48 0.008
ref|NM_006778.2| Homo sapiens ring finger protein 9 (RNF9),... 48 0.008
gb|AF220122.1|AF220122 Homo sapiens tripartite motif protei... 48 0.008
gb|U63817.1|XLU63817 Xenopus laevis RING finger protein mRN... 48 0.008
gb|AC004189.1|AC004189 Homo sapiens clone UWGC:y18c247 from... 48 0.008
ref|NM_024778.1| Homo sapiens hypothetical protein FLJ22612... 48 0.008
dbj|AK026265.1|AK026265 Homo sapiens cDNA: FLJ22612 fis, cl... 48 0.008
gb|AY070592.1| Drosophila melanogaster RE69393 full length ... 48 0.008
ref|NM_000465.1| Homo sapiens BRCA1 associated RING domain ... 48 0.008
gb|U76638.1|HSU76638 Human BRCA1-associated RING domain pro... 48 0.008
gb|AC005488.2|AC005488 Homo sapiens clone NH0313P13, comple... 48 0.011
gb|BC006908.1|BC006908 Mus musculus, clone MGC:6886 IMAGE:2... 48 0.011
dbj|D63902.1|MUSEFP Mouse mRNA for estrogen-responsive fing... 48 0.011
gb|AY033605.1|AY033602S4 Mus musculus putative transcriptio... 48 0.011
emb|AL161571.2|ATCHRIV67 Arabidopsis thaliana DNA chromosom... 48 0.011
ref|NM_053166.1| Mus musculus tripartite motif protein 7 (T... 48 0.011
ref|NM_005798.2| Homo sapiens ret finger protein 2 (RFP2), ... 48 0.011
gb|AF220033.1|AF220033 Mus musculus tripartite motif protei... 48 0.011
gb|AF241850.1|AF241850 Homo sapiens ret finger protein 2 (R... 48 0.011
gb|AF220127.1|AF220127 Homo sapiens tripartite motif protei... 48 0.011
gb|BC018337.1|BC018337 Homo sapiens, clone MGC:17233 IMAGE:... 48 0.011
emb|AL078467.1|ATF27G19 Arabidopsis thaliana DNA chromosome... 48 0.011
ref|NM_118882.1| Arabidopsis thaliana chromosome 4 CHR4v12... 48 0.011
dbj|D11458.1|NEUUVS2 N.crassa uvs-2 gene for UVS-2 protein,... 48 0.011
ref|XM_027437.2| Homo sapiens tripartite motif-containing 3... 48 0.011
gb|BC003579.1|BC003579 Homo sapiens, ret finger protein 2, ... 48 0.011
emb|AL360196.1|HST000232 Homo sapiens mRNA full length inse... 48 0.011
dbj|AB029021.1|AB029021 Homo sapiens mRNA for KIAA1098 prot... 48 0.011
ref|NM_052811.1| Homo sapiens ret finger protein 2 (RFP2), ... 48 0.011
ref|NM_130060.1| Arabidopsis thaliana chromosome 2 CHR2v12... 48 0.011
gb|AE003614.2|AE003614 Drosophila melanogaster genomic scaf... 47 0.014
emb|AL662880.6| Zebrafish DNA sequence from clone XX-182N13... 47 0.014
dbj|AB079544.1| Schizosaccharomyces pombe rhp18 gene for Sc... 47 0.014
ref|NM_016698.1| Mus musculus ring finger protein 10 (Rnf10... 47 0.014
dbj|AK004579.1|AK004579 Mus musculus adult male lung cDNA, ... 47 0.014
dbj|AB026621.1|AB026621 Mus musculus mRNA for RIE2, complet... 47 0.014
gb|BC016622.1|BC016622 Homo sapiens, clone MGC:17738 IMAGE:... 47 0.014
gb|AC003052.1|AC003052 Drosophila melanogaster DNA sequence... 47 0.014
ref|NM_066643.1| Zinc finger, C3HC4 type (RING finger) 47 0.014
emb|AJ010258.2|PWA010258 Pleurodeles waltl rag1 gene for V(... 47 0.014
emb|AL389976.1|IR2005348 Homo sapiens mRNA full length inse... 47 0.014
gb|BC021778.1|BC021778 Mus musculus, Similar to ring finger... 47 0.014
emb|AL031856.1|SPBC1734 S.pombe chromosome II cosmid c1734 47 0.014
gb|AC092397.1|AC092397 Drosophila melanogaster, chromosome ... 47 0.014
ref|NM_104575.1| Arabidopsis thaliana chromosome 1 CHR1v12... 47 0.014
ref|NM_014868.1| Homo sapiens ring finger protein 10 (RNF10... 47 0.014
dbj|D87451.1|D87451 Human mRNA for KIAA0262 gene, complete cds 47 0.014
gb|S64515.1|S64515 xnf7=zinc finger nuclear phosphoprotein ... 47 0.014
gb|M63705.1|XELXNF7AA X.laeivs xnf7 protein mRNA, complete cds 47 0.014
gb|BC010342.1|BC010342 Mus musculus, ring finger protein 10... 47 0.014
dbj|AB027196.1|AB027196 Homo sapiens mRNA for RIE2 sid2705,... 47 0.014
gb|AY065438.1| Arabidopsis thaliana putative transcription ... 47 0.019
gb|AC004584.1|AC004584 Homo sapiens chromosome 17, clone hR... 47 0.019
ref|NM_104576.1| Arabidopsis thaliana chromosome 1 CHR1v12... 47 0.019
ref|NM_005082.2| Homo sapiens zinc finger protein 147 (estr... 47 0.019
dbj|D21205.1|HUMERFP Human mRNA for estrogen responsive fin... 47 0.019
gb|BC016924.1|BC016924 Homo sapiens, zinc finger protein 14... 47 0.019
gb|U73646.1|U73646 Human Chromosome 11 Cosmid cSRL47b8, com... 47 0.024
ref|XM_053475.1| Homo sapiens ring finger protein 18 (RNF18... 47 0.024
ref|NM_023233.1| Mus musculus tripartite motif protein 13 (... 47 0.024
ref|NM_020358.1| Homo sapiens ring finger protein 18 (RNF18... 47 0.024
dbj|AK017850.1|AK017850 Mus musculus 8 days embryo whole bo... 47 0.024
dbj|AB037682.1|AB037682 Homo sapiens mRNA for testis-specif... 47 0.024
ref|XM_061893.2| Homo sapiens similar to ring finger protei... 47 0.024
gb|AF220129.1|AF220129 Mus musculus tripartite motif protei... 47 0.024
gb|AE003824.2|AE003824 Drosophila melanogaster genomic scaf... 46 0.032
gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome ... 46 0.032
ref|NG_000709.1| Drosophila melanogaster Elongation factor ... 46 0.032
emb|AJ276134.1|ATH276134 Arabidopsis thaliana mRNA for Pex1... 46 0.032
ref|NM_128192.1| Arabidopsis thaliana chromosome 2 CHR2v12... 46 0.032
gb|AC005466.5|AC005466 Drosophila melanogaster, chromosome ... 46 0.032
gb|AF119572.1|AF119572 Arabidopsis thaliana zinc-binding pe... 46 0.032
gb|AF302839.1|AF302839 Mus musculus putative tumor suppress... 46 0.032
gb|AF182946.1|AF182946 Rattus norvegicus BRCA1-associated R... 46 0.032
ref|NM_022622.1| Rattus norvegicus BRCA1-associated RING do... 46 0.032
dbj|AK074329.1| Homo sapiens cDNA FLJ23749 fis, clone HEP16452 46 0.032
gb|AF416869.1|AF416869 Xenopus laevis BRCA1-associated RING... 46 0.032
emb|AJ326740.1|HSA326740 Homo sapiens genomic sequence surr... 46 0.041
gb|BC011567.1|BC011567 Homo sapiens, clone MGC:20185 IMAGE:... 46 0.041
gb|AY051931.1| Drosophila melanogaster LD41235 full length ... 46 0.041
gb|AC008443.9| Homo sapiens chromosome 5 clone CTC-338M12, ... 46 0.041
gb|BC011261.1|BC011261 Homo sapiens, clone IMAGE:4178758, mRNA 46 0.041
dbj|AK027601.1|AK027601 Homo sapiens cDNA FLJ14695 fis, clo... 46 0.041
gb|L19324.1|XELRAG1X Xenopus laevis recombination activatio... 46 0.041
ref|XM_057122.1| Homo sapiens similar to tripartite motif-c... 46 0.041
gb|AC104772.3| Homo sapiens chromosome 2 clone RP11-3I22, c... 46 0.041
emb|AL591669.5|AL591669 Zebrafish DNA sequence from clone X... 46 0.041
emb|AJ277889.1|CAL277889 Candida albicans cvb1 gene 46 0.041
ref|NM_033342.1| Homo sapiens tripartite motif-containing 7... 46 0.041
gb|AF220032.1|AF220032 Homo sapiens tripartite motif protei... 46 0.041
gb|AF396651.1|AF396651 Homo sapiens glycogenin-interacting ... 46 0.041
gb|AF220139.1|AF220139 Mus musculus tripartite motif protei... 45 0.054
ref|NM_030743.1| Mus musculus zinc finger protein 313 (Zfp3... 45 0.054
gb|AF282919.1|AF282919 Mus musculus Zfp228 (Znf228) mRNA, c... 45 0.054
>gb|AF355273.1|AF355273 Gallus gallus breast and ovarian cancer susceptibility-like protein
(BRCA1) mRNA, complete cds
Length = 5560
Score = 3377 bits (8755), Expect = 0.0
Identities = 1699/1749 (97%), Positives = 1699/1749 (97%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI
Sbjct: 109 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 288
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL
Sbjct: 289 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 468
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG
Sbjct: 469 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 648
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 240
VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG
Sbjct: 649 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 828
Query: 241 ETDFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPLNVFDADLLTGQRDGIGNASPLKND 300
ETDFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPLNVFDADLLTGQRDGIGNASPLKND
Sbjct: 829 ETDFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPLNVFDADLLTGQRDGIGNASPLKND 1008
Query: 301 TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEMCEPMDDSL 360
TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEMCEPMDDSL
Sbjct: 1009 TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEMCEPMDDSL 1188
Query: 361 LEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQNDHAEAT 420
LEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWF QNDHAEAT
Sbjct: 1189 LEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFSKSSRILSSSSSQNDHAEAT 1368
Query: 421 DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIEDKIFGKTYERGR 480
DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIEDKIFGKTYERGR
Sbjct: 1369 DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIEDKIFGKTYERGR 1548
Query: 481 KSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDFIKKKDLEEAD 540
KSNPSTILRDILPATKKEDAAAEEGCLNNS SACILQPEDFIKKKDLEEAD
Sbjct: 1549 KSNPSTILRDILPATKKEDAAAEEGCLNNSRKDRLKRKRKSACILQPEDFIKKKDLEEAD 1728
Query: 541 RCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTLAEFKERGLQWKNAAEKVSGKCS 600
RCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTLAEFKERGLQWKNAAEKVSGKCS
Sbjct: 1729 RCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTLAEFKERGLQWKNAAEKVSGKCS 1908
Query: 601 DGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRNPGSFDLAEPLINSYPSNEEP 660
DGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRNPGSFDLAEPLINSYPSNEEP
Sbjct: 1909 DGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRNPGSFDLAEPLINSYPSNEEP 2088
Query: 661 SKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQ 720
SKADC ITKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQ
Sbjct: 2089 SKADCERRQVRRSRRLQLLSEEITKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQ 2268
Query: 721 CKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSP 780
CKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSP
Sbjct: 2269 CKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSP 2448
Query: 781 SSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFR 840
SSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFR
Sbjct: 2449 SSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFR 2628
Query: 841 IGKSPMAKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLN 900
IGKSPMAKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLN
Sbjct: 2629 IGKSPMAKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLN 2808
Query: 901 TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHT 960
TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHT
Sbjct: 2809 TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHT 2988
Query: 961 VENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRS 1020
VENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRS
Sbjct: 2989 VENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRS 3168
Query: 1021 NRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTA 1080
NRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTA
Sbjct: 3169 NRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTA 3348
Query: 1081 CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT 1140
CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT
Sbjct: 3349 CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT 3528
Query: 1141 DLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGI 1200
DLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGI
Sbjct: 3529 DLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGI 3708
Query: 1201 QRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPC 1260
QRFRRRAQKLQ LPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPC
Sbjct: 3709 QRFRRRAQKLQSSDEESSDDEDLPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPC 3888
Query: 1261 SECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVS 1320
SECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVS
Sbjct: 3889 SECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVS 4068
Query: 1321 NVKKSKEAPQSCSGGLKRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQG 1380
NVKKSKEAPQSCSGGLKRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQG
Sbjct: 4069 NVKKSKEAPQSCSGGLKRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQG 4248
Query: 1381 EILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERM 1440
EILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERM
Sbjct: 4249 EILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERM 4428
Query: 1441 RQETENVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGD 1500
RQETENVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGD
Sbjct: 4429 RQETENVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGD 4608
Query: 1501 NKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFA 1560
NKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFA
Sbjct: 4609 NKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFA 4788
Query: 1561 RKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRIL 1620
RKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRIL
Sbjct: 4789 RKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRIL 4968
Query: 1621 DEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGA 1680
DEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGA
Sbjct: 4969 DEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGA 5148
Query: 1681 SVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQE 1740
SVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQE
Sbjct: 5149 SVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQE 5328
Query: 1741 LDAYLVSQD 1749
LDAYLVSQD
Sbjct: 5329 LDAYLVSQD 5355
>gb|AF207822.1|AF207822 Pan troglodytes BRCA1 (BRCA1) mRNA, partial cds
Length = 5589
Score = 403 bits (1036), Expect = e-110
Identities = 460/1609 (28%), Positives = 717/1609 (43%), Gaps = 99/1609 (6%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 1 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 177
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 178 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 351
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +K
Sbjct: 352 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKK 528
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 529 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 684
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 685 SETDVTNTEHHQPSNNDLNTTEKRATERHPEKYQGSSVSNLHVEPCGTNT-------HAS 843
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 844 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1017
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1018 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1194
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K + ED
Sbjct: 1195 HDGGSESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNTED 1374
Query: 470 KIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY R N S + + I+ A E +E L N L P
Sbjct: 1375 KIFGKTYRRKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRATSG----LHP 1542
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1543 EDFIKKADL-AVQKTPEMINQGTNQMEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1719
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1720 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 1890
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K + K +
Sbjct: 1891 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEDKEPATGVKKSNKPNEQTSK 2070
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N + C + + ++ ++ + LE + ++++
Sbjct: 2071 RHDSDTFPELKL----TNAPGSFTNCSNTSELKEFVNPSLPREEEEEKLETVKVSNNAED 2238
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2239 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVS- 2409
Query: 808 AASILTEEKRSWSCTVFSQDKGC---CSRNVPKDFRIGKSPM---AKNASEFTMEAEDSE 861
C F KG CS++ D K P+ ++ E ++E E+SE
Sbjct: 2410 ------------QCAAFENPKGLIHGCSKDTRNDTEGFKYPLGHEVNHSRETSIEMEESE 2553
Query: 862 LDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLNTSCPDQVEERNSKY---- 914
LD QYL+N F+ SKRQSF+L+ P + C T L P ER K
Sbjct: 2554 LDAQYLQNTFKVSKRQSFALFSNPGNPEEECATFSAHCRSLKKQSPKVTFEREQKEQNQG 2733
Query: 915 LKTENLQEEKTT--AENLSSVCEKFETCESA----------CVSPVSCFVSSAACVHTVE 962
N++ +T VC+K + + A C+S S F + + T
Sbjct: 2734 KNESNIKPVQTVNITAGFPVVCQKDKPVDYAKCSIKGGSRFCLS--SQFRGNETGLITPN 2907
Query: 963 NQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNR 1022
+ + N ++ L I + + E E ++S E ++ + S
Sbjct: 2908 KHGL--LQNPYHIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTV 3069
Query: 1023 SQSDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHF 1070
S ++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3070 STISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEVGSSDENIQAELGRNRGPKLNAM 3249
Query: 1071 QPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALE 1130
+L P +Q+ E NC+ E K K E V+QTV+T S + + LE
Sbjct: 3250 LRLGVLQPEVYKQSLPESNCKHPEIK---------KQEYEEVVQTVNTDFSPCLISDNLE 3402
Query: 1131 ESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSV 1190
+ + SETPD LL D + +E SF + K++SAVF K V
Sbjct: 3403 QPMGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQRGE 3555
Query: 1191 VSCKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQV 1245
+S P + Q +RR A+KL+ LP FQ L+FGK V
Sbjct: 3556 LSRSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------V 3702
Query: 1246 TSVVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSV 1292
+++ S ST+ +ECL++N E+ L S N+C++ S+E++CS
Sbjct: 3703 SNIPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSA 3879
Query: 1293 NLFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LND 1345
+LFSSQ + E+ L S + + Q K L ++ L +
Sbjct: 3880 SLFSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEE 4059
Query: 1346 EYQEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAV 1404
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA
Sbjct: 4060 NNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQDNLIKLQQEMAE 4239
Query: 1405 LEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPV 1464
LEAVL+QHGSQ + P I + LE ++ ++ SE T K+S P
Sbjct: 4240 LEAVLEQHGSQPSNSYP-------SIISDSSALEDLQNPEQSTSEKAVLTS-QKSSEYP- 4392
Query: 1465 LCGNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 4393 ----ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 4509
Score = 285 bits (728), Expect = 4e-74
Identities = 195/505 (38%), Positives = 263/505 (51%), Gaps = 30/505 (5%)
Frame = +1
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 4123 ETSVSEDCSGLSSQSDILTTQQRDTMQDNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 4302
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 4303 DSSALEDLQNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 4482
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 4483 RSSPSKCPSLDDRWYMHSCSGSLQNTNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 4653
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE K +++ + GN+ SS+ ++K P
Sbjct: 4654 YLPRQDLEGTPYLESGISLFSDDPESDPSEDKAPESAHV----GNIP----SSTSALKVP 4809
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A N + + S K +S MS+
Sbjct: 4810 QLKVAESAQSPAAAHTTNTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 4956
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 4957 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 5136
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 5137 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 5316
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 5317 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 5496
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5497 VTREWVLDSVALYQCQELDTYLIPQ 5571
>ref|NM_007299.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta14-17, mRNA
Length = 6391
Score = 399 bits (1026), Expect = e-108
Identities = 447/1547 (28%), Positives = 695/1547 (44%), Gaps = 94/1547 (6%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 670 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 825
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 826 SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-------HAS 984
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 985 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1158
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1159 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1335
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1336 HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1515
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1516 KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1683
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1684 EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1860
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTK