TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(1749 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,164,257 sequences; 587,334,133 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
gb|AF355273.1|AF355273 Gallus gallus breast and ovarian can... 3377 0.0
gb|AF207822.1|AF207822 Pan troglodytes BRCA1 (BRCA1) mRNA, ... 403 e-110
ref|NM_007299.1| Homo sapiens breast cancer 1, early onset ... 399 e-108
gb|U14680.1|HSU14680 Human breast and ovarian cancer suscep... 397 e-108
ref|NM_007294.1| Homo sapiens breast cancer 1, early onset ... 397 e-108
ref|NM_007296.1| Homo sapiens breast cancer 1, early onset ... 397 e-108
ref|NM_007295.1| Homo sapiens breast cancer 1, early onset ... 397 e-108
ref|NM_007301.1| Homo sapiens breast cancer 1, early onset ... 396 e-107
ref|NM_007300.1| Homo sapiens breast cancer 1, early onset ... 395 e-107
ref|NM_007306.1| Homo sapiens breast cancer 1, early onset ... 325 e-102
gb|AF005068.1|AF005068 Homo sapiens breast and ovarian canc... 295 e-100
ref|NM_007302.1| Homo sapiens breast cancer 1, early onset ... 371 e-100
gb|U36475.1|MMU36475 Mus musculus breast and ovarian cancer... 359 1e-96
gb|U68174.1|MMU68174 Mus musculus breast/ovarian cancer sus... 358 3e-96
ref|NM_012514.1| Rattus norvegicus Breast cancer 1 (Brca1),... 357 6e-96
gb|AF036760.1|AF036760 Rattus norvegicus BRCA1 mRNA, comple... 357 6e-96
gb|U31625.1|MMU31625 Mus musculus breast/ovarian cancer sus... 356 1e-95
gb|U32446.1|MMU32446 Mus musculus putative breast/ovarian c... 356 1e-95
gb|U35641.1|MMU35641 Mus musculus Brca1 mRNA, complete cds 353 1e-94
ref|NM_007298.1| Homo sapiens breast cancer 1, early onset ... 282 3e-73
ref|NM_007305.1| Homo sapiens breast cancer 1, early onset ... 281 6e-73
ref|NM_007297.1| Homo sapiens breast cancer 1, early onset ... 281 6e-73
ref|NM_007303.1| Homo sapiens breast cancer 1, early onset ... 281 6e-73
gb|U64805.1|HSU64805 Homo sapiens Brca1-delta11b (Brca1) mR... 279 2e-72
ref|NM_007304.1| Homo sapiens breast cancer 1, early onset ... 279 2e-72
gb|U68041.1|HSU68041 Human breast and ovarian cancer suscep... 271 4e-70
gb|U50709.1|CFU50709 Canis familiaris BRCA1 homolog gene, c... 269 2e-69
gb|AF416868.1|AF416868 Xenopus laevis breast and ovarian ca... 265 3e-68
gb|BC012577.1|BC012577 Homo sapiens, clone IMAGE:3996658, mRNA 245 4e-62
gb|AF284031.1|AF284031 Vombatus ursinus BRCA1 gene, partial... 211 7e-52
gb|AF019081.1| Cynocephalus variegatus breast and ovarian s... 193 1e-46
gb|AF019079.1|AF019079 Alouatta seniculus breast and ovaria... 180 1e-42
gb|AF019078.1|AF019078 Macaca mulatta breast and ovarian ca... 180 1e-42
gb|S82500.1|S82500 Rattus norvegicus Brca1 (Brca1) gene, pa... 179 2e-42
gb|U60523.1|RNU60523 Rattus norvegicus Brca1 mRNA, partial cds 179 2e-42
gb|AF019080.1| Otolemur crassicaudatus breast and ovarian c... 177 7e-42
gb|AF332047.1|AF332047 Pedetes capensis BRCA1 (BRCA1) gene,... 174 1e-40
gb|AF019076.1|AF019076 Gorilla gorilla breast and ovarian c... 173 1e-40
gb|AF019075.1|AF019075 Pan troglodytes breast and ovarian c... 173 2e-40
gb|AF355794.1|AF355794 Caenolestes fuliginosus BRCA1 gene, ... 173 2e-40
gb|L78833.1|HUMBRCA1 Human BRCA1, Rho7 and vatI genes, comp... 169 2e-39
gb|AF284030.1|AF284030 Orycteropus afer BRCA1 gene, partial... 167 9e-39
gb|AF332046.1|AF332046 Graphiurus murinus BRCA1 (BRCA1) gen... 167 9e-39
gb|AF284000.1|AF284000 Chaetophractus villosus BRCA1 gene, ... 166 2e-38
gb|AF019077.1|AF019077 Pongo pygmaeus breast and ovarian ca... 166 2e-38
gb|AF284002.1|AF284002 Bradypus tridactylus BRCA1 gene, par... 166 3e-38
gb|AF284019.1|AF284019 Dugong dugon BRCA1 gene, partial cds 165 5e-38
gb|AF284020.1|AF284020 Trichechus manatus BRCA1 gene, parti... 164 8e-38
gb|AF284001.1|AF284001 Tamandua tetradactyla BRCA1 gene, pa... 162 2e-37
gb|AF284014.1|AF284014 Sus scrofa BRCA1 gene, partial cds 157 1e-35
gb|AF284027.1|AF284027 Amblysomus hottentotus BRCA1 gene, p... 156 2e-35
gb|AF284011.1|AF284011 Diceros bicornis BRCA1 gene, partial... 155 4e-35
gb|AF284012.1|AF284012 Lama glama BRCA1 gene, partial cds 154 6e-35
gb|AF284003.1|AF284003 Glaucomys volans BRCA1 gene, partial... 154 1e-34
gb|AF284021.1|AF284021 Loxodonta africana BRCA1 gene, parti... 152 4e-34
gb|AF284010.1|AF284010 Equus caballus BRCA1 gene, partial cds 151 5e-34
gb|AF284029.1|AF284029 Rhynchocyon sp. BRCA1 gene, partial cds 150 9e-34
gb|AF283999.1|AF283999 Dasypus novemcinctus BRCA1 gene, par... 149 3e-33
gb|AF203752.1|AF203752 Hipposideros commersoni Brca1 (Brca1... 148 6e-33
emb|AL590996.12|AL590996 Mouse DNA sequence from clone RP23... 144 7e-32
gb|AF284022.1|AF284022 Elephas maximus BRCA1 gene, partial cds 144 1e-31
gb|BC003248.1|BC003248 Mus musculus, clone IMAGE:3498707, m... 144 1e-31
gb|AF332048.1|AF332048 Meriones shawi BRCA1 (BRCA1) gene, p... 143 1e-31
gb|AF332043.1|AF332043 Oryzomys couesi BRCA1 (BRCA1) gene, ... 142 4e-31
gb|AY057830.1| Tapirus pinchaque BRCA1 (BRCA1) gene, partia... 141 6e-31
gb|AF332044.1|AF332044 Sciurus niger BRCA1 (BRCA1) gene, pa... 140 9e-31
gb|AY057827.1| Ochotona princeps BRCA1 (BRCA1) gene, partia... 138 5e-30
gb|AF355795.1|AF355795 Phascogale tapoatafa BRCA1 gene, par... 137 1e-29
gb|AY057825.1| Sotalia fluviatilis BRCA1 (BRCA1) gene, part... 136 2e-29
gb|AF203747.1|AF203747 Tadarida brasiliensis Brca1 (Brca1) ... 136 2e-29
gb|AF284018.1|AF284018 Felis catus BRCA1 gene, partial cds 136 2e-29
gb|AF284008.1|AF284008 Erinaceus europaeus BRCA1 gene, part... 135 3e-29
gb|AF203746.1|AF203746 Myotis daubentoni Brca1 (Brca1) gene... 135 4e-29
gb|AF355796.1|AF355796 Echymipera kalubu BRCA1 gene, partia... 135 5e-29
gb|AY057829.1| Rousettus amplexicaudatus BRCA1 (BRCA1) gene... 134 7e-29
gb|AF284007.1|AF284007 Scalopus aquaticus BRCA1 gene, parti... 131 6e-28
gb|AF284023.1|AF284023 Procavia capensis BRCA1 gene, partia... 131 7e-28
gb|AY057828.1| Sorex araneus BRCA1 (BRCA1) gene, partial cds 131 7e-28
gb|AF284017.1|AF284017 Megaptera novaeangliae BRCA1 gene, p... 130 1e-27
gb|AF284024.1|AF284024 Dendrohyrax dorsalis BRCA1 gene, par... 128 6e-27
gb|AF284006.1|AF284006 Tupaia tana BRCA1 gene, partial cds 127 1e-26
gb|AF284015.1|AF284015 Hippopotamus amphibius BRCA1 gene, p... 127 1e-26
gb|AF284009.1|AF284009 Manis sp. BRCA1 gene, partial cds 127 1e-26
gb|AY057826.1| Lutreolina crassicaudata BRCA1 (BRCA1) gene,... 123 2e-25
gb|AF332045.1|AF332045 Aplodontia rufa BRCA1 (BRCA1) gene, ... 123 2e-25
gb|AF284016.1|AF284016 Physeter catodon BRCA1 gene, partial... 123 2e-25
gb|AF284028.1|AF284028 Elephantulus rufescens BRCA1 gene, p... 119 4e-24
gb|AF284005.1|AF284005 Lepus capensis BRCA1 gene, partial cds 115 3e-23
gb|AF284026.1|AF284026 Tenrec ecaudatus BRCA1 gene, partial... 114 7e-23
gb|AF203748.1|AF203748 Taphozous sp. Brca1 (Brca1) gene, pa... 111 8e-22
gb|AF203751.1|AF203751 Pteropus rayneri Brca1 (Brca1) gene,... 106 3e-20
gb|AF284013.1|AF284013 Bos taurus BRCA1 gene, partial cds 98 7e-18
gb|AF203749.1|AF203749 Megaderma lyra Brca1 (Brca1) gene, p... 89 3e-15
gb|AF284025.1|AF284025 Echinops telfairi BRCA1 gene, partia... 89 6e-15
ref|NM_100283.1| Arabidopsis thaliana chromosome 1 CHR1v12... 85 6e-14
gb|AF284033.1|AF284033 Macropus rufus BRCA1 gene, partial cds 81 9e-13
ref|NM_118225.1| Arabidopsis thaliana chromosome 4 CHR4v12... 80 2e-12
gb|AF203750.1|AF203750 Cynopterus sphinx Brca1 (Brca1) gene... 77 2e-11
gb|AF284004.1|AF284004 Hystrix africaeaustralis BRCA1 gene,... 72 5e-10
dbj|AB023055.1|AB023055 Homo sapiens genomic DNA, chromosom... 69 5e-09
dbj|AB023054.1|AB023054 Homo sapiens genomic DNA, chromosom... 69 5e-09
ref|NM_065379.1| Zinc finger, C3HC4 type (RING finger) 69 5e-09
gb|AC004202.1|AC004202 Homo sapiens clone UWGC:y2c224 from ... 69 5e-09
dbj|AP000518.1|AP000518 Homo sapiens genomic DNA, chromosom... 69 5e-09
gb|BC017017.1|BC017017 Homo sapiens, Similar to tripartite ... 69 5e-09
ref|XM_004547.4| Homo sapiens tripartite motif-containing 3... 69 5e-09
ref|NM_052816.1| Homo sapiens tripartite motif-containing 3... 67 2e-08
ref|NM_007028.2| Homo sapiens tripartite motif-containing 3... 67 2e-08
gb|AF230386.1|AF230386 Homo sapiens tripartite motif protei... 65 5e-08
gb|U33835.1|MMU33835 Mus musculus breast and ovarian cancer... 65 5e-08
gb|AF230387.1|AF230387 Homo sapiens tripartite motif protei... 65 5e-08
emb|Y07828.1|HSRINGR H.sapiens mRNA for RING protein 65 5e-08
gb|AF234782.1|AF234782 Rattus norvegicus BRCA1 mRNA, partia... 64 1e-07
gb|AC091507.2|AC091507 Sus scrofa clone RP44-397B10, comple... 62 4e-07
gb|AF284032.1|AF284032 Lutreolina crassicaudata BRCA1 gene,... 60 2e-06
gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb2... 60 2e-06
ref|NM_123795.1| Arabidopsis thaliana chromosome 5 CHR5v12... 60 3e-06
gb|AF120281.1|AF120281 Sus scrofa BRCA1 protein (BRCA1) gen... 60 3e-06
gb|BC005447.1|BC005447 Mus musculus, clone MGC:6159 IMAGE:3... 59 4e-06
gb|AF220015.1|AF220015 Mus musculus tripartite motif protei... 58 8e-06
gb|AC092727.2| Bos taurus clone RP42-351K5, complete sequence 58 8e-06
gb|AF220014.1|AF220014 Mus musculus tripartite motif protei... 58 8e-06
gb|AF220016.1|AF220016 Mus musculus tripartite motif protei... 58 8e-06
emb|AJ251829.1|SSC251829 Sus scrofa MHC class I SLA genomic... 58 8e-06
ref|NM_009099.1| Mus musculus tripartite motif protein 30 (... 58 8e-06
gb|J03776.1|MUSRPT1 Mouse down regulatory protein (rpt-1r) ... 58 8e-06
ref|NM_009277.1| Mus musculus tripartite motif protein 21 (... 58 1e-05
gb|L27990.1|MUSROP Mus musculus Ro protein mRNA, complete cds 58 1e-05
ref|XM_091412.1| Homo sapiens similar to tripartite motif p... 58 1e-05
gb|BC010580.1|BC010580 Mus musculus, Sjogren syndrome antig... 58 1e-05
ref|NM_024596.1| Homo sapiens hypothetical protein FLJ12847... 58 1e-05
dbj|AK022909.1|AK022909 Homo sapiens cDNA FLJ12847 fis, clo... 58 1e-05
gb|AC018737.9| Homo sapiens BAC clone RP11-416H1 from 2, co... 56 3e-05
dbj|AK005854.1|AK005854 Mus musculus adult male testis cDNA... 56 3e-05
gb|AC103565.1| Caenorhabditis briggsae cosmid CB019K16, com... 56 3e-05
gb|AC087262.2| Rattus norvegicus clone RP31-151E23 strain B... 56 3e-05
ref|NM_026205.1| Mus musculus RIKEN cDNA 1700010O16 gene (1... 56 3e-05
dbj|AK005850.1|AK005850 Mus musculus adult male testis cDNA... 56 3e-05
ref|XM_015680.4| Homo sapiens hypothetical protein FLJ12847... 56 3e-05
ref|NM_006074.2| Homo sapiens tripartite motif-containing 2... 56 4e-05
gb|U13657.1|HSROSSA1 Human 52 kD Ro/SSA autoantigen (RO52) ... 56 4e-05
ref|XM_015243.2| Homo sapiens tripartite motif-containing 2... 56 4e-05
gb|AC009758.8| Homo sapiens chromosome 11, clone RP11-101E4... 56 4e-05
gb|M34551.1|HUMROSSA Human 52-kD ribonucleoprotein Ro/SSA m... 56 4e-05
emb|Z49834.1|ANNUVAMR A.nidulans nuvA mRNA for NUVA 56 4e-05
gb|AF391283.1|AF391283 Homo sapiens 11p15.5 clone LOH11A, p... 56 4e-05
gb|BC010861.1|BC010861 Homo sapiens, clone MGC:9233 IMAGE:3... 56 4e-05
gb|AF101874.4|AF101874 Homo sapiens clone pTWB9n12.11T7 seq... 56 4e-05
gb|U01882.1|HSU01882 Homo sapiens SS-A/Ro autoantigen 52 kd... 56 4e-05
emb|Z49875.1|ANL20NUVA A.nidulans nuvA gene 56 4e-05
emb|AL033391.1|CAC20C1 C.albicans cosmid Ca20C1 56 4e-05
emb|X82200.1|HSSTAF50 H.sapiens Staf50 mRNA 56 4e-05
emb|AL360187.1|HST000229 Homo sapiens mRNA full length inse... 56 4e-05
ref|NM_003141.2| Homo sapiens Sjogren syndrome antigen A1 (... 56 4e-05
dbj|AK057366.1|AK057366 Homo sapiens cDNA FLJ32804 fis, clo... 56 4e-05
gb|AF203745.1|AF203745 Tonatia bidens Brca1 (Brca1) gene, p... 56 4e-05
gb|S79392.1|S79392 uvsH=DNA repair/zinc finger protein [Eme... 56 4e-05
gb|BC022281.1| Homo sapiens, clone IMAGE:4718024, mRNA 56 4e-05
gb|AF230395.1|AF230395 Mus musculus tripartite motif protei... 55 7e-05
ref|NM_030698.4| Mus musculus tripartite motif protein 26 (... 55 7e-05
gb|AF230396.1|AF230396 Mus musculus tripartite motif protei... 55 7e-05
gb|AF196346.1|AF196346 Danio rerio Ring finger protein 1b (... 55 7e-05
gb|AC074359.2| Mus musculus chromosome 5 clone RP23-289J24 ... 55 9e-05
emb|Z66495.1|CEC36A4 Caenorhabditis elegans cosmid C36A4, c... 55 9e-05
gb|AC024608.4| Mus musculus chromosome 5 clone RP23-333I24 ... 55 9e-05
gb|AC004186.1|AC004186 Homo sapiens clone UWGC:y17c054 from... 54 1e-04
ref|NM_003449.2| Homo sapiens tripartite motif-containing 2... 54 1e-04
ref|XM_084540.1| Homo sapiens similar to 52kD Ro/SSA autoan... 54 1e-04
dbj|AP000517.1|AP000517 Homo sapiens genomic DNA, chromosom... 54 1e-04
ref|NM_101724.1| Arabidopsis thaliana chromosome 1 CHR1v12... 54 1e-04
emb|AL662832.5|AL662832 Human DNA sequence from clone XXbac... 54 1e-04
ref|NM_033034.1| Homo sapiens tripartite motif-containing 5... 54 1e-04
dbj|AK027593.1|AK027593 Homo sapiens cDNA FLJ14687 fis, clo... 54 1e-04
gb|U09825.1|HSU09825 Human acid finger protein mRNA, comple... 54 1e-04
ref|XM_006063.8| Homo sapiens SSA protein SS-56 (SS-56), mRNA 54 2e-04
ref|NM_016271.1| Homo sapiens STRIN protein (STRIN), mRNA 54 2e-04
gb|AF162680.3|AF162680 Homo sapiens HSD-4 protein (HSD-4) m... 54 2e-04
gb|AC090719.8| Homo sapiens chromosome 11, clone RP11-648B1... 54 2e-04
ref|NM_018073.4| Homo sapiens SSA protein SS-56 (SS-56), mRNA 54 2e-04
gb|AF439153.1|AF439153 Homo sapiens Ro/SSA1 related protein... 54 2e-04
gb|AF360739.1|AF360739 Homo sapiens SSA protein SS-56 (SS-5... 54 2e-04
ref|XM_059810.2| Homo sapiens similar to similar to RFP tra... 54 2e-04
gb|AC073841.9| Homo sapiens BAC clone RP11-483G21 from 7, c... 54 2e-04
gb|BC018107.1|BC018107 Homo sapiens, clone MGC:8758 IMAGE:3... 54 2e-04
gb|AF394913.1|AF394913 Rosa hybrid cultivar photoregulatory... 54 2e-04
gb|BC003712.1|BC003712 Mus musculus, Trif gene, clone MGC:5... 54 2e-04
dbj|AK012358.1|AK012358 Mus musculus 11 days embryo whole b... 54 2e-04
ref|NM_019706.1| Mus musculus Trif gene (Trif-pending), mRNA 54 2e-04
dbj|AB025011.1|AB025011 Mus musculus mRNA for Trif-d, compl... 54 2e-04
ref|NM_033093.1| Homo sapiens tripartite motif-containing 5... 54 2e-04
ref|NM_007212.1| Homo sapiens ring finger protein 2 (RNF2),... 54 2e-04
gb|AF141327.1|AF141327 Homo sapiens ring finger protein BAP... 54 2e-04
dbj|AK004238.1|AK004238 Mus musculus 18 days embryo whole b... 54 2e-04
dbj|AB040053.1|AB040053 Oryza sativa subsp. japonica rCOP1 ... 54 2e-04
gb|AF220029.1|AF220029 Homo sapiens tripartite motif protei... 54 2e-04
dbj|AK010486.1|AK010486 Mus musculus ES cells cDNA, RIKEN f... 54 2e-04
ref|XM_085412.1| Homo sapiens similar to RIKEN cDNA 1700010... 54 2e-04
ref|NM_033092.1| Homo sapiens tripartite motif-containing 5... 54 2e-04
gb|BC020770.1|BC020770 Homo sapiens, Similar to tripartite ... 54 2e-04
gb|AF220027.1|AF220027 Homo sapiens tripartite motif protei... 54 2e-04
gb|AF220028.1|AF220028 Homo sapiens tripartite motif protei... 54 2e-04
dbj|AK013124.1|AK013124 Mus musculus 10, 11 days embryo who... 54 2e-04
dbj|AB025010.1|AB025010 Mus musculus mRNA for Trif, complet... 54 2e-04
ref|NM_053588.1| Rattus norvegicus Trif gene (Trif-pending)... 54 2e-04
gb|AF220026.1|AF220026 Homo sapiens tripartite motif protei... 54 2e-04
gb|AF220025.1|AF220025 Homo sapiens tripartite motif protei... 54 2e-04
gb|AF315468.1|AF315468 Rattus norvegicus RSD-4 mRNA, comple... 54 2e-04
gb|AF290197.1|AF290197 Mus musculus RING finger protein 33 ... 54 2e-04
ref|XM_001741.3| Homo sapiens ring finger protein 2 (RNF2),... 54 2e-04
gb|BC020122.1|BC020122 Mus musculus, ring finger protein 2,... 54 2e-04
gb|BC012583.1|BC012583 Homo sapiens, Similar to ring finger... 54 2e-04
emb|Y12880.1|MMY12880 Mus musculus mRNA for polycomb-M33 in... 54 2e-04
gb|BC021258.1|BC021258 Homo sapiens, tripartite motif-conta... 54 2e-04
emb|Y10571.1|HSDING H.sapiens mRNA for dinG gene 54 2e-04
dbj|AK056523.1|AK056523 Homo sapiens cDNA FLJ31961 fis, clo... 54 2e-04
dbj|AK013419.1|AK013419 Mus musculus 10, 11 days embryo who... 53 3e-04
gb|AY060824.1| Drosophila melanogaster GM01182 full length ... 53 3e-04
emb|AL391121.29|AL391121 Human DNA sequence from clone RP11... 53 3e-04
ref|XM_081374.1| CG10981, mRNA 53 3e-04
ref|NM_053100.1| Mus musculus tripartite motif protein 8 (T... 53 3e-04
gb|AY058535.1| Drosophila melanogaster LD23953 full length ... 53 3e-04
gb|AF281047.1|AF281047 Mus musculus domesticus glioblastoma... 53 3e-04
gb|AE003601.2|AE003601 Drosophila melanogaster genomic scaf... 53 3e-04
gb|AE003762.2|AE003762 Drosophila melanogaster genomic scaf... 53 3e-04
emb|AJ001514.1|DMDRING Drosophila melanogaster mRNA for DRI... 53 3e-04
gb|AC011252.4|AC011252 Drosophila melanogaster, chromosome ... 53 3e-04
ref|XM_096414.1| Homo sapiens region containing ; ring fing... 53 3e-04
ref|NM_009066.1| Mus musculus ring finger protein 1 (Ring1)... 53 3e-04
emb|Y12881.1|MMY12881 Mus musculus mRNA for transcription r... 53 3e-04
ref|NM_030912.1| Homo sapiens ring finger protein 27 (RNF27... 53 3e-04
gb|AF281046.1|AF281046 Homo sapiens glioblastoma-expressed ... 53 3e-04
gb|AC008311.3|AC008311 Drosophila melanogaster, chromosome ... 53 3e-04
ref|NG_000825.1| Drosophila melanogaster (Ring) on chromos... 53 3e-04
gb|AC007818.7|AC007818 Drosophila melanogaster, chromosome ... 53 3e-04
ref|NM_002931.2| Homo sapiens ring finger protein 1 (RING1)... 53 3e-04
emb|Z14000.1|HSRING1 H.sapiens RING1 gene 53 3e-04
gb|AF220034.1|AF220034 Homo sapiens tripartite motif protei... 53 3e-04
gb|M62800.1|HUMSSARO Human 52-kD SS-A/Ro autoantigen mRNA, ... 53 3e-04
ref|NM_058161.1| Drosophila melanogaster (Ring), transcrip... 53 3e-04
gb|BC021925.1|BC021925 Homo sapiens, ring finger protein 27... 53 3e-04
emb|AJ335896.1|HSA335896 Homo sapiens genomic sequence surr... 53 3e-04
emb|AJ334588.1|HSA334588 Homo sapiens genomic sequence surr... 53 3e-04
emb|AL360160.1|HST000217 Homo sapiens mRNA full length inse... 53 3e-04
gb|BC002922.1|BC002922 Homo sapiens, ring finger protein 1,... 53 3e-04
gb|AC084851.2| Homo sapiens chromosome 11, clone CTD-2132H1... 52 4e-04
gb|AF220030.1|AF220030 Homo sapiens tripartite motif protei... 52 4e-04
ref|NM_028842.1| Mus musculus RIKEN cDNA 1700045I19 gene (1... 52 4e-04
dbj|AK006700.1|AK006700 Mus musculus adult male testis cDNA... 52 4e-04
gb|AC005700.2|AC005700 Arabidopsis thaliana chromosome II s... 52 4e-04
ref|XM_012034.3| Homo sapiens similar to ring finger protei... 52 4e-04
ref|XM_044478.3| Homo sapiens tripartite motif-containing 3... 52 4e-04
ref|XM_016444.1| Homo sapiens similar to ring finger protei... 52 4e-04
dbj|AK027664.1|AK027664 Homo sapiens cDNA FLJ14758 fis, clo... 52 4e-04
ref|NM_058166.2| Homo sapiens tripartite motif-containing 6... 52 4e-04
ref|XM_062300.1| Homo sapiens similar to ring finger protei... 52 6e-04
ref|XM_093996.1| Homo sapiens similar to ring finger protei... 52 6e-04
ref|NM_022798.1| Rattus norvegicus RING finger protein terf... 52 6e-04
gb|AF156272.1|AF156272 Rattus norvegicus RING finger protei... 52 6e-04
gb|AC027369.8| Homo sapiens chromosome , clone RP11-56P9, c... 52 6e-04
emb|Y07829.2|HSRINGG Homo sapiens RFB30 gene for RING finge... 52 8e-04
gb|AC013258.5|AC013258 Arabidopsis thaliana chromosome 1 BA... 52 8e-04
gb|AF220024.1|AF220024 Homo sapiens tripartite motif protei... 52 8e-04
ref|NM_106156.1| Arabidopsis thaliana chromosome 1 CHR1v12... 52 8e-04
ref|NG_000004.1| Homo sapiens genomic cytochrome P450, subf... 52 8e-04
ref|NM_130390.1| Homo sapiens tripartite motif-containing 3... 52 8e-04
dbj|AB039902.1|AB039902 Homo sapiens ifp1 mRNA for interfer... 52 8e-04
ref|XM_069474.1| Homo sapiens similar to tripartite motif p... 52 8e-04
gb|AF220144.1|AF220144 Homo sapiens tripartite motif protei... 52 8e-04
gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F... 52 8e-04
gb|AF220143.1|AF220143 Homo sapiens tripartite motif protei... 52 8e-04
ref|NM_130389.1| Homo sapiens tripartite motif-containing 3... 52 8e-04
gb|AC011904.3|AC011904 Homo sapiens BAC clone CTD-3244O18 f... 52 8e-04
gb|BC011763.1|BC011763 Homo sapiens, Similar to tripartite ... 52 8e-04
ref|NM_021616.3| Homo sapiens tripartite motif-containing 3... 52 8e-04
dbj|AB039904.1|AB039904 Homo sapiens ifp1 mRNA for interfer... 52 8e-04
dbj|AB039903.1|AB039903 Homo sapiens ifp1 mRNA for interfer... 52 8e-04
ref|NM_033091.1| Homo sapiens tripartite motif-containing 4... 52 8e-04
gb|AC004977.2|AC004977 Homo sapiens PAC clone RP5-1152C17 f... 52 8e-04
ref|NM_122181.1| Arabidopsis thaliana chromosome 5 CHR5v12... 52 8e-04
dbj|AK027876.1|AK027876 Homo sapiens cDNA FLJ14970 fis, clo... 52 8e-04
dbj|AB005245.2|AB005245 Arabidopsis thaliana genomic DNA, c... 52 8e-04
ref|NM_120595.1| Arabidopsis thaliana chromosome 5 CHR5v12... 52 8e-04
gb|AF220023.1|AF220023 Homo sapiens tripartite motif protei... 52 8e-04
ref|NM_023835.1| Mus musculus tripartite motif protein 12 (... 52 8e-04
ref|NM_033017.2| Homo sapiens tripartite motif-containing 4... 52 8e-04
gb|AF220126.1|AF220126 Mus musculus tripartite motif protei... 52 8e-04
dbj|AK009769.1|AK009769 Mus musculus adult male tongue cDNA... 52 8e-04
emb|AL139288.15|AL139288 Human DNA sequence from clone RP5-... 51 0.001
emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome... 51 0.001
gb|AC008784.7| Homo sapiens chromosome 5 clone CTD-2028D11,... 51 0.001
dbj|AB014086.1|AB014086 Homo sapiens genomic DNA, chromosom... 51 0.001
gb|AY046033.1| Arabidopsis thaliana putative RING zinc fing... 51 0.001
emb|AL662795.5|AL662795 Human DNA sequence from clone XXbac... 51 0.001
gb|BC007661.1|BC007661 Homo sapiens, Similar to ring finger... 51 0.001
gb|BC023999.1| Homo sapiens, tripartite motif-containing 17... 51 0.001
ref|NM_016102.1| Homo sapiens tripartite motif-containing 1... 51 0.001
gb|AF156271.1|AF156271 Homo sapiens RING finger protein ter... 51 0.001
dbj|AB015468.1|AB015468 Arabidopsis thaliana genomic DNA, c... 51 0.001
ref|NM_021253.1| Homo sapiens ring finger protein 23 (RNF23... 51 0.001
dbj|AB046381.1|AB046381 Homo sapiens mRNA for testis-abunda... 51 0.001
ref|XM_044477.3| Homo sapiens similar to tripartite motif-c... 51 0.001
gb|AC004188.1|AC004188 Homo sapiens clone UWGC:y17c090 from... 51 0.001
dbj|AP000516.1|AP000516 Homo sapiens genomic DNA, chromosom... 51 0.001
dbj|AK055426.1|AK055426 Homo sapiens cDNA FLJ30864 fis, clo... 51 0.001
ref|NM_124242.1| Arabidopsis thaliana chromosome 5 CHR5v12... 51 0.001
ref|NM_115665.1| Arabidopsis thaliana chromosome 3 CHR3v12... 51 0.001
ref|NM_024468.1| Mus musculus ring finger protein 23 (Rnf23... 51 0.001
dbj|AB046382.1|AB046382 Mus musculus mRNA for testis-abunda... 51 0.001
ref|NM_128855.1| Arabidopsis thaliana chromosome 2 CHR2v12... 51 0.001
gb|U90439.2|U90439 Arabidopsis thaliana chromosome II secti... 51 0.001
gb|AY072117.1| Arabidopsis thaliana putative RING zinc fing... 51 0.001
gb|AY058184.1| Arabidopsis thaliana At2g42030/T6D20.8 mRNA,... 51 0.001
ref|NM_129766.1| Arabidopsis thaliana chromosome 2 CHR2v12... 51 0.001
gb|L04190.1|SMRPWA33A Pleurodeles waltlii Zn-binding protei... 51 0.001
gb|AF265664.1|AF265664 Solanum tuberosum resistance gene cl... 51 0.001
gb|L24437.1|ATHCOP1A Arabidopsis thaliana (COP1) regulatory... 51 0.001
ref|XM_093998.1| Homo sapiens similar to ring finger protei... 51 0.001
emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome... 50 0.002
gb|AF071527.1|AF071527 Arabidopsis thaliana BAC F9H3, from ... 50 0.002
ref|NM_053168.1| Mus musculus tripartite motif protein 11 (... 50 0.002
gb|BC009070.1|BC009070 Mus musculus, ring finger protein 1,... 50 0.002
gb|AF220124.1|AF220124 Mus musculus tripartite motif protei... 50 0.002
ref|NM_116589.1| Arabidopsis thaliana chromosome 4 CHR4v12... 50 0.002
gb|BC020102.1|BC020102 Mus musculus, Similar to tripartite ... 50 0.002
dbj|AB008518.1|AB008518 Arabidopsis thaliana RMA1 mRNA, com... 50 0.002
ref|NM_111600.1| Arabidopsis thaliana chromosome 3 CHR3v12... 50 0.002
emb|AJ325069.1|HSA325069 Homo sapiens genomic sequence surr... 50 0.002
ref|NM_012210.2| Homo sapiens tripartite motif-containing 3... 50 0.002
gb|U18543.1|HSU18543 Human zinc-finger protein mRNA, comple... 50 0.002
dbj|AP003734.3|AP003734 Oryza sativa genomic DNA, chromosom... 50 0.002
gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome II... 50 0.002
gb|U96166.2|SCU96166 Streptococcus crista ATP-binding casse... 50 0.002
gb|AF220121.1|AF220121 Mus musculus tripartite motif protei... 50 0.002
ref|NM_003071.1| Homo sapiens SWI/SNF related, matrix assoc... 50 0.002
gb|L34673.1|HUMHIP116A Human ATPase, DNA-binding protein (H... 50 0.002
emb|Z46606.1|HSHLTF1 H.sapiens HLTF gene for helicase-like ... 50 0.002
ref|NM_011280.1| Mus musculus tripartite motif protein 10 (... 50 0.002
gb|AF134811.1|AF134811 Mus musculus hematopoietic RING fing... 50 0.002
ref|XM_046292.3| Homo sapiens similar to hypothetical prote... 50 0.002
gb|AF289544.1|AF289544 Oryza sativa copI gene, complete cds 50 0.002
dbj|AK011082.1|AK011082 Mus musculus 13 days embryo liver c... 50 0.002
gb|AE003407.1|DROSADH01 Drosophila melanogaster, chromosome... 50 0.003
gb|U91328.1|HSU91328 Human hereditary haemochromatosis regi... 50 0.003
gb|BC015353.1|BC015353 Homo sapiens, clone MGC:21446 IMAGE:... 50 0.003
emb|AJ276591.1|PSA276591 Pisum sativum cop1 gene for consti... 50 0.003
emb|AJ276592.1|PSA276592 Pisum sativum lip1 mutant cop1 gen... 50 0.003
ref|NM_018207.1| Homo sapiens hypothetical protein FLJ10759... 50 0.003
gb|AE003641.1|AE003641 Drosophila melanogaster genomic scaf... 50 0.003
dbj|AK001621.1|AK001621 Homo sapiens cDNA FLJ10759 fis, clo... 50 0.003
gb|AC009237.3| Homo sapiens BAC clone RP11-440D17 from 2, c... 50 0.003
gb|AC092236.1|AC092236 Drosophila melanogaster, chromosome ... 50 0.003
ref|XM_001764.5| Homo sapiens similar to hypothetical prote... 50 0.003
dbj|AK016522.1|AK016522 Mus musculus adult male testis cDNA... 50 0.003
gb|BC012152.1|BC012152 Homo sapiens, clone MGC:20370 IMAGE:... 50 0.003
gb|BC007999.1|BC007999 Homo sapiens, hypothetical protein F... 50 0.003
gb|BC001222.1|BC001222 Homo sapiens, hypothetical protein F... 50 0.003
gb|BC021115.1|BC021115 Homo sapiens, Similar to tripartite ... 50 0.003
gb|U90547.1|HSU90547 Human Ro/SSA ribonucleoprotein homolog... 50 0.003
ref|NM_006355.1| Homo sapiens ring finger protein 15 (RNF15... 50 0.003
ref|XM_059379.1| Homo sapiens similar to ring finger protei... 50 0.003
ref|XM_059381.1| Homo sapiens similar to ring finger protei... 50 0.003
gb|BC011689.1|BC011689 Homo sapiens, clone MGC:19672 IMAGE:... 50 0.003
gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis tha... 49 0.004
gb|AY057705.1| Arabidopsis thaliana At1g19310/F18O14_14 mRN... 49 0.004
gb|AF284812.1|AF284812 Homo sapiens BRCAI (BRCA1) gene, exo... 49 0.004
ref|XM_008732.4| Homo sapiens hypothetical protein FLJ20456... 49 0.004
ref|NM_017831.1| Homo sapiens hypothetical protein FLJ20456... 49 0.004
dbj|AK000463.1|AK000463 Homo sapiens cDNA FLJ20456 fis, clo... 49 0.004
ref|NM_101788.1| Arabidopsis thaliana chromosome 1 CHR1v12... 49 0.004
gb|BC012021.1|BC012021 Homo sapiens, clone MGC:21737 IMAGE:... 49 0.004
gb|S80988.1|S80988 xnf7-O=nuclear factor 7 [Xenopus laevis,... 49 0.004
gb|AC021488.5| Homo sapiens chromosome 11, clone RP11-77F24... 49 0.004
gb|AC006014.2|AC006014 Homo sapiens PAC clone RP5-953A4 fro... 49 0.004
emb|AL365214.16|AL365214 Human DNA sequence from clone RP11... 49 0.004
ref|NM_024114.1| Homo sapiens hypothetical protein MGC4827 ... 49 0.004
gb|BC001862.1|BC001862 Homo sapiens, clone MGC:4827 IMAGE:3... 49 0.004
dbj|AK016103.1|AK016103 Mus musculus adult male testis cDNA... 49 0.004
dbj|AB060918.1|AB060918 Macaca fascicularis brain cDNA clon... 49 0.004
ref|XM_017350.1| Homo sapiens similar to hypothetical prote... 49 0.004
gb|AC003033.2|AC003033 Arabidopsis thaliana chromosome II s... 49 0.005
gb|U67953.1| Caenorhabditis elegans cosmid ZC13, complete s... 49 0.005
emb|AL133284.13|AL133284 Human DNA sequence from clone RP11... 49 0.005
gb|AF010138.1|AF010138 Mus musculus transcription factor (P... 49 0.005
gb|AF315714.1|AF315714 Ipomoea nil COP1 mRNA, complete cds 49 0.005
ref|NM_009210.1| Mus musculus SWI/SNF related, matrix assoc... 49 0.005
gb|AF165911.1|AF165911 Mus musculus helicase-like transcrip... 49 0.005
gb|AF010600.1|AF010600 Mus musculus TNF-response element bi... 49 0.005
ref|XM_069216.1| Homo sapiens similar to ret finger protein... 49 0.005
gb|AC036111.7| Homo sapiens chromosome 11, clone RP11-738O1... 49 0.005
ref|XM_005335.5| Homo sapiens tripartite motif-containing 3... 49 0.005
gb|BC003154.1|BC003154 Homo sapiens, TAT-INTERACTIVE PROTEI... 49 0.005
emb|AJ289773.1|PSA289773 Pisum sativum mRNA for COP1 regula... 49 0.006
gb|U63818.1|XLU63818 Xenopus laevis RING finger protein mRN... 49 0.006
gb|AF029984.1|AF029984 Lycopersicon esculentum COP1 homolog... 49 0.006
dbj|AK013959.1|AK013959 Mus musculus 13 days embryo head cD... 49 0.006
emb|AJ289774.1|PSA289774 Pisum sativum mRNA for COP1 regula... 49 0.006
emb|Y09579.1|PSCOP1PRT P.sativum mRNA for Cop1 protein 49 0.006
ref|XM_084193.1| Homo sapiens similar to tripartite motif-c... 48 0.008
gb|U66565.1|OCU66565 Oryctolagus cuniculus RUSH-1beta mRNA,... 48 0.008
gb|AF220123.1|AF220123 Homo sapiens tripartite motif protei... 48 0.008
gb|U66564.1|OCU66564 Oryctolagus cuniculus RUSH-1alpha mRNA... 48 0.008
ref|XM_092184.1| Homo sapiens similar to putative (LOC16483... 48 0.008
ref|NM_052828.1| Homo sapiens ring finger protein 9 (RNF9),... 48 0.008
emb|AJ224819.1|HSAJ4819 Homo sapiens mRNA for candidate tum... 48 0.008
gb|U48717.1|CPU48717 Cryptosporidium parvum zinc finger pro... 48 0.008
dbj|AP003437.3|AP003437 Oryza sativa genomic DNA, chromosom... 48 0.008
ref|XM_041688.2| Homo sapiens tripartite motif-containing 1... 48 0.008
ref|NM_006778.2| Homo sapiens ring finger protein 9 (RNF9),... 48 0.008
gb|AF220122.1|AF220122 Homo sapiens tripartite motif protei... 48 0.008
gb|U63817.1|XLU63817 Xenopus laevis RING finger protein mRN... 48 0.008
gb|AC004189.1|AC004189 Homo sapiens clone UWGC:y18c247 from... 48 0.008
ref|NM_024778.1| Homo sapiens hypothetical protein FLJ22612... 48 0.008
dbj|AK026265.1|AK026265 Homo sapiens cDNA: FLJ22612 fis, cl... 48 0.008
gb|AY070592.1| Drosophila melanogaster RE69393 full length ... 48 0.008
ref|NM_000465.1| Homo sapiens BRCA1 associated RING domain ... 48 0.008
gb|U76638.1|HSU76638 Human BRCA1-associated RING domain pro... 48 0.008
gb|AC005488.2|AC005488 Homo sapiens clone NH0313P13, comple... 48 0.011
gb|BC006908.1|BC006908 Mus musculus, clone MGC:6886 IMAGE:2... 48 0.011
dbj|D63902.1|MUSEFP Mouse mRNA for estrogen-responsive fing... 48 0.011
gb|AY033605.1|AY033602S4 Mus musculus putative transcriptio... 48 0.011
emb|AL161571.2|ATCHRIV67 Arabidopsis thaliana DNA chromosom... 48 0.011
ref|NM_053166.1| Mus musculus tripartite motif protein 7 (T... 48 0.011
ref|NM_005798.2| Homo sapiens ret finger protein 2 (RFP2), ... 48 0.011
gb|AF220033.1|AF220033 Mus musculus tripartite motif protei... 48 0.011
gb|AF241850.1|AF241850 Homo sapiens ret finger protein 2 (R... 48 0.011
gb|AF220127.1|AF220127 Homo sapiens tripartite motif protei... 48 0.011
gb|BC018337.1|BC018337 Homo sapiens, clone MGC:17233 IMAGE:... 48 0.011
emb|AL078467.1|ATF27G19 Arabidopsis thaliana DNA chromosome... 48 0.011
ref|NM_118882.1| Arabidopsis thaliana chromosome 4 CHR4v12... 48 0.011
dbj|D11458.1|NEUUVS2 N.crassa uvs-2 gene for UVS-2 protein,... 48 0.011
ref|XM_027437.2| Homo sapiens tripartite motif-containing 3... 48 0.011
gb|BC003579.1|BC003579 Homo sapiens, ret finger protein 2, ... 48 0.011
emb|AL360196.1|HST000232 Homo sapiens mRNA full length inse... 48 0.011
dbj|AB029021.1|AB029021 Homo sapiens mRNA for KIAA1098 prot... 48 0.011
ref|NM_052811.1| Homo sapiens ret finger protein 2 (RFP2), ... 48 0.011
ref|NM_130060.1| Arabidopsis thaliana chromosome 2 CHR2v12... 48 0.011
gb|AE003614.2|AE003614 Drosophila melanogaster genomic scaf... 47 0.014
emb|AL662880.6| Zebrafish DNA sequence from clone XX-182N13... 47 0.014
dbj|AB079544.1| Schizosaccharomyces pombe rhp18 gene for Sc... 47 0.014
ref|NM_016698.1| Mus musculus ring finger protein 10 (Rnf10... 47 0.014
dbj|AK004579.1|AK004579 Mus musculus adult male lung cDNA, ... 47 0.014
dbj|AB026621.1|AB026621 Mus musculus mRNA for RIE2, complet... 47 0.014
gb|BC016622.1|BC016622 Homo sapiens, clone MGC:17738 IMAGE:... 47 0.014
gb|AC003052.1|AC003052 Drosophila melanogaster DNA sequence... 47 0.014
ref|NM_066643.1| Zinc finger, C3HC4 type (RING finger) 47 0.014
emb|AJ010258.2|PWA010258 Pleurodeles waltl rag1 gene for V(... 47 0.014
emb|AL389976.1|IR2005348 Homo sapiens mRNA full length inse... 47 0.014
gb|BC021778.1|BC021778 Mus musculus, Similar to ring finger... 47 0.014
emb|AL031856.1|SPBC1734 S.pombe chromosome II cosmid c1734 47 0.014
gb|AC092397.1|AC092397 Drosophila melanogaster, chromosome ... 47 0.014
ref|NM_104575.1| Arabidopsis thaliana chromosome 1 CHR1v12... 47 0.014
ref|NM_014868.1| Homo sapiens ring finger protein 10 (RNF10... 47 0.014
dbj|D87451.1|D87451 Human mRNA for KIAA0262 gene, complete cds 47 0.014
gb|S64515.1|S64515 xnf7=zinc finger nuclear phosphoprotein ... 47 0.014
gb|M63705.1|XELXNF7AA X.laeivs xnf7 protein mRNA, complete cds 47 0.014
gb|BC010342.1|BC010342 Mus musculus, ring finger protein 10... 47 0.014
dbj|AB027196.1|AB027196 Homo sapiens mRNA for RIE2 sid2705,... 47 0.014
gb|AY065438.1| Arabidopsis thaliana putative transcription ... 47 0.019
gb|AC004584.1|AC004584 Homo sapiens chromosome 17, clone hR... 47 0.019
ref|NM_104576.1| Arabidopsis thaliana chromosome 1 CHR1v12... 47 0.019
ref|NM_005082.2| Homo sapiens zinc finger protein 147 (estr... 47 0.019
dbj|D21205.1|HUMERFP Human mRNA for estrogen responsive fin... 47 0.019
gb|BC016924.1|BC016924 Homo sapiens, zinc finger protein 14... 47 0.019
gb|U73646.1|U73646 Human Chromosome 11 Cosmid cSRL47b8, com... 47 0.024
ref|XM_053475.1| Homo sapiens ring finger protein 18 (RNF18... 47 0.024
ref|NM_023233.1| Mus musculus tripartite motif protein 13 (... 47 0.024
ref|NM_020358.1| Homo sapiens ring finger protein 18 (RNF18... 47 0.024
dbj|AK017850.1|AK017850 Mus musculus 8 days embryo whole bo... 47 0.024
dbj|AB037682.1|AB037682 Homo sapiens mRNA for testis-specif... 47 0.024
ref|XM_061893.2| Homo sapiens similar to ring finger protei... 47 0.024
gb|AF220129.1|AF220129 Mus musculus tripartite motif protei... 47 0.024
gb|AE003824.2|AE003824 Drosophila melanogaster genomic scaf... 46 0.032
gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome ... 46 0.032
ref|NG_000709.1| Drosophila melanogaster Elongation factor ... 46 0.032
emb|AJ276134.1|ATH276134 Arabidopsis thaliana mRNA for Pex1... 46 0.032
ref|NM_128192.1| Arabidopsis thaliana chromosome 2 CHR2v12... 46 0.032
gb|AC005466.5|AC005466 Drosophila melanogaster, chromosome ... 46 0.032
gb|AF119572.1|AF119572 Arabidopsis thaliana zinc-binding pe... 46 0.032
gb|AF302839.1|AF302839 Mus musculus putative tumor suppress... 46 0.032
gb|AF182946.1|AF182946 Rattus norvegicus BRCA1-associated R... 46 0.032
ref|NM_022622.1| Rattus norvegicus BRCA1-associated RING do... 46 0.032
dbj|AK074329.1| Homo sapiens cDNA FLJ23749 fis, clone HEP16452 46 0.032
gb|AF416869.1|AF416869 Xenopus laevis BRCA1-associated RING... 46 0.032
emb|AJ326740.1|HSA326740 Homo sapiens genomic sequence surr... 46 0.041
gb|BC011567.1|BC011567 Homo sapiens, clone MGC:20185 IMAGE:... 46 0.041
gb|AY051931.1| Drosophila melanogaster LD41235 full length ... 46 0.041
gb|AC008443.9| Homo sapiens chromosome 5 clone CTC-338M12, ... 46 0.041
gb|BC011261.1|BC011261 Homo sapiens, clone IMAGE:4178758, mRNA 46 0.041
dbj|AK027601.1|AK027601 Homo sapiens cDNA FLJ14695 fis, clo... 46 0.041
gb|L19324.1|XELRAG1X Xenopus laevis recombination activatio... 46 0.041
ref|XM_057122.1| Homo sapiens similar to tripartite motif-c... 46 0.041
gb|AC104772.3| Homo sapiens chromosome 2 clone RP11-3I22, c... 46 0.041
emb|AL591669.5|AL591669 Zebrafish DNA sequence from clone X... 46 0.041
emb|AJ277889.1|CAL277889 Candida albicans cvb1 gene 46 0.041
ref|NM_033342.1| Homo sapiens tripartite motif-containing 7... 46 0.041
gb|AF220032.1|AF220032 Homo sapiens tripartite motif protei... 46 0.041
gb|AF396651.1|AF396651 Homo sapiens glycogenin-interacting ... 46 0.041
gb|AF220139.1|AF220139 Mus musculus tripartite motif protei... 45 0.054
ref|NM_030743.1| Mus musculus zinc finger protein 313 (Zfp3... 45 0.054
gb|AF282919.1|AF282919 Mus musculus Zfp228 (Znf228) mRNA, c... 45 0.054
>gb|AF355273.1|AF355273 Gallus gallus breast and ovarian cancer susceptibility-like protein
(BRCA1) mRNA, complete cds
Length = 5560
Score = 3377 bits (8755), Expect = 0.0
Identities = 1699/1749 (97%), Positives = 1699/1749 (97%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI
Sbjct: 109 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 288
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL
Sbjct: 289 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 468
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG
Sbjct: 469 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 648
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 240
VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG
Sbjct: 649 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 828
Query: 241 ETDFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPLNVFDADLLTGQRDGIGNASPLKND 300
ETDFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPLNVFDADLLTGQRDGIGNASPLKND
Sbjct: 829 ETDFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPLNVFDADLLTGQRDGIGNASPLKND 1008
Query: 301 TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEMCEPMDDSL 360
TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEMCEPMDDSL
Sbjct: 1009 TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEMCEPMDDSL 1188
Query: 361 LEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQNDHAEAT 420
LEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWF QNDHAEAT
Sbjct: 1189 LEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFSKSSRILSSSSSQNDHAEAT 1368
Query: 421 DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIEDKIFGKTYERGR 480
DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIEDKIFGKTYERGR
Sbjct: 1369 DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIEDKIFGKTYERGR 1548
Query: 481 KSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDFIKKKDLEEAD 540
KSNPSTILRDILPATKKEDAAAEEGCLNNS SACILQPEDFIKKKDLEEAD
Sbjct: 1549 KSNPSTILRDILPATKKEDAAAEEGCLNNSRKDRLKRKRKSACILQPEDFIKKKDLEEAD 1728
Query: 541 RCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTLAEFKERGLQWKNAAEKVSGKCS 600
RCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTLAEFKERGLQWKNAAEKVSGKCS
Sbjct: 1729 RCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTLAEFKERGLQWKNAAEKVSGKCS 1908
Query: 601 DGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRNPGSFDLAEPLINSYPSNEEP 660
DGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRNPGSFDLAEPLINSYPSNEEP
Sbjct: 1909 DGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRNPGSFDLAEPLINSYPSNEEP 2088
Query: 661 SKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQ 720
SKADC ITKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQ
Sbjct: 2089 SKADCERRQVRRSRRLQLLSEEITKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQ 2268
Query: 721 CKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSP 780
CKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSP
Sbjct: 2269 CKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSP 2448
Query: 781 SSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFR 840
SSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFR
Sbjct: 2449 SSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFR 2628
Query: 841 IGKSPMAKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLN 900
IGKSPMAKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLN
Sbjct: 2629 IGKSPMAKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLN 2808
Query: 901 TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHT 960
TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHT
Sbjct: 2809 TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHT 2988
Query: 961 VENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRS 1020
VENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRS
Sbjct: 2989 VENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRS 3168
Query: 1021 NRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTA 1080
NRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTA
Sbjct: 3169 NRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTA 3348
Query: 1081 CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT 1140
CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT
Sbjct: 3349 CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT 3528
Query: 1141 DLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGI 1200
DLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGI
Sbjct: 3529 DLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGI 3708
Query: 1201 QRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPC 1260
QRFRRRAQKLQ LPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPC
Sbjct: 3709 QRFRRRAQKLQSSDEESSDDEDLPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPC 3888
Query: 1261 SECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVS 1320
SECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVS
Sbjct: 3889 SECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVS 4068
Query: 1321 NVKKSKEAPQSCSGGLKRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQG 1380
NVKKSKEAPQSCSGGLKRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQG
Sbjct: 4069 NVKKSKEAPQSCSGGLKRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQG 4248
Query: 1381 EILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERM 1440
EILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERM
Sbjct: 4249 EILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERM 4428
Query: 1441 RQETENVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGD 1500
RQETENVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGD
Sbjct: 4429 RQETENVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGD 4608
Query: 1501 NKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFA 1560
NKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFA
Sbjct: 4609 NKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFA 4788
Query: 1561 RKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRIL 1620
RKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRIL
Sbjct: 4789 RKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRIL 4968
Query: 1621 DEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGA 1680
DEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGA
Sbjct: 4969 DEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGA 5148
Query: 1681 SVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQE 1740
SVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQE
Sbjct: 5149 SVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQE 5328
Query: 1741 LDAYLVSQD 1749
LDAYLVSQD
Sbjct: 5329 LDAYLVSQD 5355
>gb|AF207822.1|AF207822 Pan troglodytes BRCA1 (BRCA1) mRNA, partial cds
Length = 5589
Score = 403 bits (1036), Expect = e-110
Identities = 460/1609 (28%), Positives = 717/1609 (43%), Gaps = 99/1609 (6%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 1 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 177
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 178 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 351
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +K
Sbjct: 352 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKK 528
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 529 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 684
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 685 SETDVTNTEHHQPSNNDLNTTEKRATERHPEKYQGSSVSNLHVEPCGTNT-------HAS 843
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 844 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1017
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1018 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1194
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K + ED
Sbjct: 1195 HDGGSESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNTED 1374
Query: 470 KIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY R N S + + I+ A E +E L N L P
Sbjct: 1375 KIFGKTYRRKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRATSG----LHP 1542
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1543 EDFIKKADL-AVQKTPEMINQGTNQMEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1719
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1720 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 1890
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K + K +
Sbjct: 1891 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEDKEPATGVKKSNKPNEQTSK 2070
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N + C + + ++ ++ + LE + ++++
Sbjct: 2071 RHDSDTFPELKL----TNAPGSFTNCSNTSELKEFVNPSLPREEEEEKLETVKVSNNAED 2238
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2239 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVS- 2409
Query: 808 AASILTEEKRSWSCTVFSQDKGC---CSRNVPKDFRIGKSPM---AKNASEFTMEAEDSE 861
C F KG CS++ D K P+ ++ E ++E E+SE
Sbjct: 2410 ------------QCAAFENPKGLIHGCSKDTRNDTEGFKYPLGHEVNHSRETSIEMEESE 2553
Query: 862 LDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLNTSCPDQVEERNSKY---- 914
LD QYL+N F+ SKRQSF+L+ P + C T L P ER K
Sbjct: 2554 LDAQYLQNTFKVSKRQSFALFSNPGNPEEECATFSAHCRSLKKQSPKVTFEREQKEQNQG 2733
Query: 915 LKTENLQEEKTT--AENLSSVCEKFETCESA----------CVSPVSCFVSSAACVHTVE 962
N++ +T VC+K + + A C+S S F + + T
Sbjct: 2734 KNESNIKPVQTVNITAGFPVVCQKDKPVDYAKCSIKGGSRFCLS--SQFRGNETGLITPN 2907
Query: 963 NQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNR 1022
+ + N ++ L I + + E E ++S E ++ + S
Sbjct: 2908 KHGL--LQNPYHIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTV 3069
Query: 1023 SQSDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHF 1070
S ++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3070 STISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEVGSSDENIQAELGRNRGPKLNAM 3249
Query: 1071 QPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALE 1130
+L P +Q+ E NC+ E K K E V+QTV+T S + + LE
Sbjct: 3250 LRLGVLQPEVYKQSLPESNCKHPEIK---------KQEYEEVVQTVNTDFSPCLISDNLE 3402
Query: 1131 ESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSV 1190
+ + SETPD LL D + +E SF + K++SAVF K V
Sbjct: 3403 QPMGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQRGE 3555
Query: 1191 VSCKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQV 1245
+S P + Q +RR A+KL+ LP FQ L+FGK V
Sbjct: 3556 LSRSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------V 3702
Query: 1246 TSVVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSV 1292
+++ S ST+ +ECL++N E+ L S N+C++ S+E++CS
Sbjct: 3703 SNIPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSA 3879
Query: 1293 NLFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LND 1345
+LFSSQ + E+ L S + + Q K L ++ L +
Sbjct: 3880 SLFSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEE 4059
Query: 1346 EYQEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAV 1404
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA
Sbjct: 4060 NNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQDNLIKLQQEMAE 4239
Query: 1405 LEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPV 1464
LEAVL+QHGSQ + P I + LE ++ ++ SE T K+S P
Sbjct: 4240 LEAVLEQHGSQPSNSYP-------SIISDSSALEDLQNPEQSTSEKAVLTS-QKSSEYP- 4392
Query: 1465 LCGNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 4393 ----ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 4509
Score = 285 bits (728), Expect = 4e-74
Identities = 195/505 (38%), Positives = 263/505 (51%), Gaps = 30/505 (5%)
Frame = +1
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 4123 ETSVSEDCSGLSSQSDILTTQQRDTMQDNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 4302
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 4303 DSSALEDLQNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 4482
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 4483 RSSPSKCPSLDDRWYMHSCSGSLQNTNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 4653
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE K +++ + GN+ SS+ ++K P
Sbjct: 4654 YLPRQDLEGTPYLESGISLFSDDPESDPSEDKAPESAHV----GNIP----SSTSALKVP 4809
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A N + + S K +S MS+
Sbjct: 4810 QLKVAESAQSPAAAHTTNTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 4956
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 4957 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 5136
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 5137 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 5316
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 5317 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 5496
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5497 VTREWVLDSVALYQCQELDTYLIPQ 5571
>ref|NM_007299.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta14-17, mRNA
Length = 6391
Score = 399 bits (1026), Expect = e-108
Identities = 447/1547 (28%), Positives = 695/1547 (44%), Gaps = 94/1547 (6%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 670 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 825
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 826 SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-------HAS 984
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 985 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1158
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1159 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1335
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1336 HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1515
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1516 KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1683
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1684 EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1860
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1861 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 2031
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K K +
Sbjct: 2032 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSK 2211
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N ++C + + ++ ++ + LE + ++++
Sbjct: 2212 RHDSDTFPELKL----TNAPGSFTKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAED 2379
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2380 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVSQ 2553
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
A+ + C S+D +RN + F+ ++ E ++E E+SELD QYL
Sbjct: 2554 CAAFENPKGLIHGC---SKD----NRNDTEGFKYPLGHEVNHSRETSIEMEESELDAQYL 2712
Query: 868 RNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEER------NS 912
+N F+ SKRQSF+ + P A C T S L P +Q EE N
Sbjct: 2713 QNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKNESNI 2892
Query: 913 KYLKTENL--------QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQ 964
K ++T N+ Q++K S+ C S S F + + T
Sbjct: 2893 KPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS------SQFRGNETGLITPNKH 3054
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 3055 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 3216
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3217 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 3396
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 3397 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 3549
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 3550 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQKGELS 3702
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 3703 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 3849
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 3850 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 4026
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 4027 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 4206
Query: 1348 QEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLE 1406
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LE
Sbjct: 4207 QEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELE 4386
Query: 1407 AVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSE 1453
AVL+QHGSQ + P I + LE +R ++ SE D+E
Sbjct: 4387 AVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKDAE 4506
Score = 227 bits (579), Expect = 8e-57
Identities = 275/1117 (24%), Positives = 457/1117 (40%), Gaps = 106/1117 (9%)
Frame = +1
Query: 738 DRNGADLEANGIQISSKNSDDMAKNRSFFNPTFSCQL-SNFNSPSSKAGSQEGEMLGKLF 796
++NG + +K D +N NP S + S F + + S M +L
Sbjct: 1759 EQNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELN 1938
Query: 797 LPQS--PSKTVL---------HAASILTEEKRSW-SCTVFSQDKGCCSRNVPKDFRIGKS 844
+ S P K L HA ++ S +CT D C S K + +
Sbjct: 1939 IHNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDS-CSSSEEIKKKKYNQM 2115
Query: 845 PMAKNASEFTMEAEDSELDMQYLRNIF-RSSKRQSFSLYPT--------PMKACTTDDVA 895
P+ + + ME ++ + ++SKR +P C+
Sbjct: 2116 PVRHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSEL 2295
Query: 896 SEKLNTSCPDQVEERNSKYLKTENLQEE-KTTAENLSSVCEKFETCESACVSPVS----- 949
E +N S P + +E + +K N E+ K + V + + ES+ +S V
Sbjct: 2296 KEFVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYG 2475
Query: 950 -------CFVSSAACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKT 1002
VS+ T N+ VS+ A N L+ C+ N + K G E
Sbjct: 2476 TQESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVN 2655
Query: 1003 LSTGIGVESK------------LRLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSS 1050
S +E + ++S +S S+ N EE A + S
Sbjct: 2656 HSRETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEEC-------ATFSAHSGS 2814
Query: 1051 ESNQVEKAEVVDDKGLMQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKG--- 1107
Q K ++ + + P A F + K + + +KG
Sbjct: 2815 LKKQSPKVTFECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSR 2994
Query: 1108 ---------NEERVIQTVSTGLSE--------FSVREALEESLKGH---SDFTDLSETPD 1147
NE +I GL + F ++ ++ K + +F + S +P+
Sbjct: 2995 FCLSSQFRGNETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPE 3174
Query: 1148 GLLCSDNDTEESASFYVTNR-----KDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGIQR 1202
+ ++N ++ N K+ S+ + G++ EV S+ E IQ
Sbjct: 3175 REMGNENIPSTVSTISRNNIRENVFKEASSSNINEVGSS-TNEVGSSINEIGSSDENIQA 3351
Query: 1203 F--RRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPC 1260
R R KL + +++ + G + P +I+KQ V + N P
Sbjct: 3352 ELGRNRGPKLNAMLRLGVLQPEV--YKQSLPGSNCKHP-EIKKQEYEEVVQTVNTDFSPY 3522
Query: 1261 SECLNENNEQKTLEAALSNECASPSQE----SECSVNLFSSQSNMSEESVDGAQELKK-T 1315
+++N EQ + S C+ + E + +++++ E S ++ ++K
Sbjct: 3523 --LISDNLEQPMGSSHASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGE 3696
Query: 1316 LTQVSNVKKSKEAPQSCSGGLKRLKN---NLNDEYQEDPNMGANL-GEASGYDSETSRVE 1371
L++ + Q G K+L++ NL+ E +E P L G+ + S+++R
Sbjct: 3697 LSRSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTR-- 3870
Query: 1372 DSHEPFSQGEILSTQQKN--AMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYC 1429
H + + ++N +++N+L ++ + +A + H S++ + C +
Sbjct: 3871 --HSTVATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETK----CSASLFS 4032
Query: 1430 SIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLCGNVTK-NPNSSSFSVKHPCPQTA 1488
S + T N + D P L G+ + S S V +
Sbjct: 4033 S-----QCSELEDLTANTNTQD-----------PFLIGSSKQMRHQSESQGVGLSDKELV 4164
Query: 1489 EATDSSAVAQGDNKSNVQVCKSK----RSVC-FPTSVLHNVAGKENAASSGTTCRTEM-- 1541
+ +N Q S S C TSV + +G + + TT + +
Sbjct: 4165 SDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQ 4344
Query: 1542 -SIVASGLNQSE-HLMVQKFARKTQSTFSNHITDGTTHVIMKT--------DEELVCERT 1591
+++ +E ++++ + +++ + I+D + ++ D E VCERT
Sbjct: 4345 HNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALEDLRNPEQSTSEKDAEFVCERT 4524
Query: 1592 LKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKI 1651
LKYFLGIAG KWVVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KI
Sbjct: 4525 LKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKI 4704
Query: 1652 FKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTS 1711
F+ EICC GPFT+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E
Sbjct: 4705 FRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNG 4884
Query: 1712 YEAIQRKNNVAVVTREWVLDSVACFECQELDAYLVSQ 1748
+ AI + VVTREWVLDSVA ++CQELD YL+ Q
Sbjct: 4885 FHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 4995
>gb|U14680.1|HSU14680 Human breast and ovarian cancer susceptibility (BRCA1) mRNA, complete
cds
Length = 5711
Score = 397 bits (1020), Expect = e-108
Identities = 459/1607 (28%), Positives = 718/1607 (44%), Gaps = 97/1607 (6%)
Frame = +3
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 120 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 296
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 297 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 470
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 471 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 647
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 648 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 803
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 804 SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-------HAS 962
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 963 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1136
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1137 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1313
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1314 HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1493
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1494 KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1661
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1662 EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1838
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1839 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 2009
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K K +
Sbjct: 2010 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSK 2189
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N ++C + + ++ ++ + LE + ++++
Sbjct: 2190 RHDSDTFPELKL----TNAPGSFTKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAED 2357
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2358 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVSQ 2531
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
A+ + C S+D +RN + F+ ++ E ++E E+SELD QYL
Sbjct: 2532 CAAFENPKGLIHGC---SKD----NRNDTEGFKYPLGHEVNHSRETSIEMEESELDAQYL 2690
Query: 868 RNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEER------NS 912
+N F+ SKRQSF+ + P A C T S L P +Q EE N
Sbjct: 2691 QNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKNESNI 2870
Query: 913 KYLKTENL--------QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQ 964
K ++T N+ Q++K S+ C S S F + + T
Sbjct: 2871 KPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS------SQFRGNETGLITPNKH 3032
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 3033 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 3194
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3195 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 3374
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 3375 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 3527
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 3528 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQKGELS 3680
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 3681 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 3827
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 3828 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 4004
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 4005 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 4184
Query: 1348 QEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLE 1406
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LE
Sbjct: 4185 QEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELE 4364
Query: 1407 AVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLC 1466
AVL+QHGSQ + P I + LE +R ++ SE T K+S P
Sbjct: 4365 AVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS-QKSSEYP--- 4511
Query: 1467 GNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 4512 --ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 4628
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +3
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 4242 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 4421
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 4422 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 4601
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 4602 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 4772
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 4773 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 4928
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 4929 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 5075
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 5076 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 5255
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 5256 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 5435
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 5436 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 5615
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5616 VTREWVLDSVALYQCQELDTYLIPQ 5690
>ref|NM_007294.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1a, mRNA
Length = 7108
Score = 397 bits (1020), Expect = e-108
Identities = 459/1607 (28%), Positives = 718/1607 (44%), Gaps = 97/1607 (6%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 670 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 825
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 826 SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-------HAS 984
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 985 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1158
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1159 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1335
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1336 HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1515
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1516 KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1683
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1684 EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1860
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1861 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 2031
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K K +
Sbjct: 2032 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSK 2211
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N ++C + + ++ ++ + LE + ++++
Sbjct: 2212 RHDSDTFPELKL----TNAPGSFTKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAED 2379
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2380 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVSQ 2553
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
A+ + C S+D +RN + F+ ++ E ++E E+SELD QYL
Sbjct: 2554 CAAFENPKGLIHGC---SKD----NRNDTEGFKYPLGHEVNHSRETSIEMEESELDAQYL 2712
Query: 868 RNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEER------NS 912
+N F+ SKRQSF+ + P A C T S L P +Q EE N
Sbjct: 2713 QNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKNESNI 2892
Query: 913 KYLKTENL--------QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQ 964
K ++T N+ Q++K S+ C S S F + + T
Sbjct: 2893 KPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS------SQFRGNETGLITPNKH 3054
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 3055 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 3216
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3217 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 3396
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 3397 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 3549
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 3550 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQKGELS 3702
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 3703 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 3849
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 3850 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 4026
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 4027 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 4206
Query: 1348 QEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLE 1406
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LE
Sbjct: 4207 QEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELE 4386
Query: 1407 AVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLC 1466
AVL+QHGSQ + P I + LE +R ++ SE T K+S P
Sbjct: 4387 AVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS-QKSSEYP--- 4533
Query: 1467 GNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 4534 --ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 4650
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +1
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 4264 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 4443
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 4444 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 4623
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 4624 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 4794
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 4795 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 4950
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 4951 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 5097
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 5098 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 5277
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 5278 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 5457
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 5458 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 5637
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5638 VTREWVLDSVALYQCQELDTYLIPQ 5712
>ref|NM_007296.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1a', mRNA
Length = 7102
Score = 397 bits (1020), Expect = e-108
Identities = 459/1607 (28%), Positives = 718/1607 (44%), Gaps = 97/1607 (6%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 136 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 312
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 313 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 486
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 487 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 663
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 664 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 819
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 820 SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-------HAS 978
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 979 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1152
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1153 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1329
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1330 HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1509
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1510 KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1677
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1678 EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1854
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1855 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 2025
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K K +
Sbjct: 2026 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSK 2205
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N ++C + + ++ ++ + LE + ++++
Sbjct: 2206 RHDSDTFPELKL----TNAPGSFTKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAED 2373
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2374 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVSQ 2547
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
A+ + C S+D +RN + F+ ++ E ++E E+SELD QYL
Sbjct: 2548 CAAFENPKGLIHGC---SKD----NRNDTEGFKYPLGHEVNHSRETSIEMEESELDAQYL 2706
Query: 868 RNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEER------NS 912
+N F+ SKRQSF+ + P A C T S L P +Q EE N
Sbjct: 2707 QNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKNESNI 2886
Query: 913 KYLKTENL--------QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQ 964
K ++T N+ Q++K S+ C S S F + + T
Sbjct: 2887 KPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS------SQFRGNETGLITPNKH 3048
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 3049 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 3210
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3211 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 3390
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 3391 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 3543
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 3544 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQKGELS 3696
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 3697 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 3843
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 3844 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 4020
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 4021 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 4200
Query: 1348 QEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLE 1406
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LE
Sbjct: 4201 QEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELE 4380
Query: 1407 AVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLC 1466
AVL+QHGSQ + P I + LE +R ++ SE T K+S P
Sbjct: 4381 AVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS-QKSSEYP--- 4527
Query: 1467 GNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 4528 --ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 4644
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +1
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 4258 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 4437
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 4438 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 4617
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 4618 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 4788
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 4789 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 4944
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 4945 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 5091
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 5092 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 5271
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 5272 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 5451
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 5452 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 5631
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5632 VTREWVLDSVALYQCQELDTYLIPQ 5706
>ref|NM_007295.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1b, mRNA
Length = 7365
Score = 397 bits (1020), Expect = e-108
Identities = 459/1607 (28%), Positives = 718/1607 (44%), Gaps = 97/1607 (6%)
Frame = +2
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 398 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 574
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 575 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 748
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 749 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 925
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 926 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 1081
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 1082 SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-------HAS 1240
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 1241 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1414
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1415 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1591
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1592 HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1771
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1772 KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1939
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1940 EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 2116
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 2117 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 2287
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K K +
Sbjct: 2288 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSK 2467
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N ++C + + ++ ++ + LE + ++++
Sbjct: 2468 RHDSDTFPELKL----TNAPGSFTKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAED 2635
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2636 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVSQ 2809
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
A+ + C S+D +RN + F+ ++ E ++E E+SELD QYL
Sbjct: 2810 CAAFENPKGLIHGC---SKD----NRNDTEGFKYPLGHEVNHSRETSIEMEESELDAQYL 2968
Query: 868 RNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEER------NS 912
+N F+ SKRQSF+ + P A C T S L P +Q EE N
Sbjct: 2969 QNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKNESNI 3148
Query: 913 KYLKTENL--------QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQ 964
K ++T N+ Q++K S+ C S S F + + T
Sbjct: 3149 KPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS------SQFRGNETGLITPNKH 3310
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 3311 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 3472
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3473 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 3652
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 3653 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 3805
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 3806 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQKGELS 3958
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 3959 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 4105
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 4106 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 4282
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 4283 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 4462
Query: 1348 QEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLE 1406
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LE
Sbjct: 4463 QEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELE 4642
Query: 1407 AVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLC 1466
AVL+QHGSQ + P I + LE +R ++ SE T K+S P
Sbjct: 4643 AVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS-QKSSEYP--- 4789
Query: 1467 GNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 4790 --ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 4906
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +2
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 4520 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 4699
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 4700 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 4879
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 4880 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 5050
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 5051 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 5206
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 5207 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 5353
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 5354 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 5533
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 5534 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 5713
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 5714 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 5893
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5894 VTREWVLDSVALYQCQELDTYLIPQ 5968
>ref|NM_007301.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta15-17, mRNA
Length = 6519
Score = 396 bits (1017), Expect = e-107
Identities = 452/1571 (28%), Positives = 703/1571 (43%), Gaps = 94/1571 (5%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 670 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 825
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 826 SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-------HAS 984
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 985 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1158
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1159 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1335
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1336 HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1515
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1516 KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1683
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1684 EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1860
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1861 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 2031
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K K +
Sbjct: 2032 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSK 2211
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N ++C + + ++ ++ + LE + ++++
Sbjct: 2212 RHDSDTFPELKL----TNAPGSFTKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAED 2379
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2380 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVSQ 2553
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
A+ + C S+D +RN + F+ ++ E ++E E+SELD QYL
Sbjct: 2554 CAAFENPKGLIHGC---SKD----NRNDTEGFKYPLGHEVNHSRETSIEMEESELDAQYL 2712
Query: 868 RNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEER------NS 912
+N F+ SKRQSF+ + P A C T S L P +Q EE N
Sbjct: 2713 QNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKNESNI 2892
Query: 913 KYLKTENL--------QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQ 964
K ++T N+ Q++K S+ C S S F + + T
Sbjct: 2893 KPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS------SQFRGNETGLITPNKH 3054
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 3055 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 3216
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3217 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 3396
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 3397 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 3549
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 3550 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQKGELS 3702
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 3703 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 3849
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 3850 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 4026
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 4027 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 4206
Query: 1348 QEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLE 1406
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LE
Sbjct: 4207 QEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELE 4386
Query: 1407 AVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLC 1466
AVL+QHGSQ + P I + LE +R ++ SE T K+S P
Sbjct: 4387 AVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS-QKSSEYP--- 4533
Query: 1467 GNVTKNPNSSS 1477
+++NP S
Sbjct: 4534 --ISQNPEGLS 4560
Score = 226 bits (575), Expect = 2e-56
Identities = 107/166 (64%), Positives = 125/166 (74%)
Frame = +2
Query: 1583 DEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKR 1642
D E VCERTLKYFLGIAG KWVVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKR
Sbjct: 4625 DAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKR 4804
Query: 1643 ARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQ 1702
AR+S KIF+ EICC GPFT+M T LEW+V+LCGASVVK+L FT +VVVQ
Sbjct: 4805 ARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQ 4984
Query: 1703 PDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLVSQ 1748
PDAW E + AI + VVTREWVLDSVA ++CQELD YL+ Q
Sbjct: 4985 PDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 5122
>ref|NM_007300.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta14-18, mRNA
Length = 6313
Score = 395 bits (1015), Expect = e-107
Identities = 445/1543 (28%), Positives = 692/1543 (44%), Gaps = 94/1543 (6%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 670 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 825
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 826 SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-------HAS 984
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 985 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1158
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1159 VDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1335
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1336 HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1515
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1516 KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1683
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1684 EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1860
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1861 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 2031
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K K +
Sbjct: 2032 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSK 2211
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N ++C + + ++ ++ + LE + ++++
Sbjct: 2212 RHDSDTFPELKL----TNAPGSFTKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAED 2379
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2380 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVSQ 2553
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
A+ + C S+D +RN + F+ ++ E ++E E+SELD QYL
Sbjct: 2554 CAAFENPKGLIHGC---SKD----NRNDTEGFKYPLGHEVNHSRETSIEMEESELDAQYL 2712
Query: 868 RNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEER------NS 912
+N F+ SKRQSF+ + P A C T S L P +Q EE N
Sbjct: 2713 QNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKNESNI 2892
Query: 913 KYLKTENL--------QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQ 964
K ++T N+ Q++K S+ C S S F + + T
Sbjct: 2893 KPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS------SQFRGNETGLITPNKH 3054
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 3055 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 3216
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3217 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 3396
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 3397 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 3549
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 3550 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQKGELS 3702
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 3703 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 3849
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 3850 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 4026
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 4027 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 4206
Query: 1348 QEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLE 1406
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LE
Sbjct: 4207 QEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELE 4386
Query: 1407 AVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSE 1449
AVL+QHGSQ + P I + LE +R ++ SE
Sbjct: 4387 AVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSE 4494
Score = 181 bits (458), Expect = 8e-43
Identities = 264/1122 (23%), Positives = 436/1122 (38%), Gaps = 111/1122 (9%)
Frame = +1
Query: 738 DRNGADLEANGIQISSKNSDDMAKNRSFFNPTFSCQL-SNFNSPSSKAGSQEGEMLGKLF 796
++NG + +K D +N NP S + S F + + S M +L
Sbjct: 1759 EQNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELN 1938
Query: 797 LPQS--PSKTVL---------HAASILTEEKRSW-SCTVFSQDKGCCSRNVPKDFRIGKS 844
+ S P K L HA ++ S +CT D C S K + +
Sbjct: 1939 IHNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDS-CSSSEEIKKKKYNQM 2115
Query: 845 PMAKNASEFTMEAEDSELDMQYLRNIF-RSSKRQSFSLYPT--------PMKACTTDDVA 895
P+ + + ME ++ + ++SKR +P C+
Sbjct: 2116 PVRHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSEL 2295
Query: 896 SEKLNTSCPDQVEERNSKYLKTENLQEE-KTTAENLSSVCEKFETCESACVSPVS----- 949
E +N S P + +E + +K N E+ K + V + + ES+ +S V
Sbjct: 2296 KEFVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYG 2475
Query: 950 -------CFVSSAACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKT 1002
VS+ T N+ VS+ A N L+ C+ N + K G E
Sbjct: 2476 TQESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVN 2655
Query: 1003 LSTGIGVESK------------LRLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSS 1050
S +E + ++S +S S+ N EE A + S
Sbjct: 2656 HSRETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEEC-------ATFSAHSGS 2814
Query: 1051 ESNQVEKAEVVDDKGLMQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKG--- 1107
Q K ++ + + P A F + K + + +KG
Sbjct: 2815 LKKQSPKVTFECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSR 2994
Query: 1108 ---------NEERVIQTVSTGLSE--------FSVREALEESLKGH---SDFTDLSETPD 1147
NE +I GL + F ++ ++ K + +F + S +P+
Sbjct: 2995 FCLSSQFRGNETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPE 3174
Query: 1148 GLLCSDNDTEESASFYVTNR-----KDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGIQR 1202
+ ++N ++ N K+ S+ + G++ EV S+ E IQ
Sbjct: 3175 REMGNENIPSTVSTISRNNIRENVFKEASSSNINEVGSS-TNEVGSSINEIGSSDENIQA 3351
Query: 1203 F--RRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPC 1260
R R KL + +++ + G + P +I+KQ V + N P
Sbjct: 3352 ELGRNRGPKLNAMLRLGVLQPEV--YKQSLPGSNCKHP-EIKKQEYEEVVQTVNTDFSPY 3522
Query: 1261 SECLNENNEQKTLEAALSNECASPSQE----SECSVNLFSSQSNMSEESVDGAQELKK-T 1315
+++N EQ + S C+ + E + +++++ E S ++ ++K
Sbjct: 3523 --LISDNLEQPMGSSHASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGE 3696
Query: 1316 LTQVSNVKKSKEAPQSCSGGLKRLKN---NLNDEYQEDPNMGANL-GEASGYDSETSRVE 1371
L++ + Q G K+L++ NL+ E +E P L G+ + S+++R
Sbjct: 3697 LSRSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTR-- 3870
Query: 1372 DSHEPFSQGEILSTQQKN--AMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYC 1429
H + + ++N +++N+L ++ + +A + H S++ + C +
Sbjct: 3871 --HSTVATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETK----CSASLFS 4032
Query: 1430 SIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAE 1489
S + T N + D P L G SS ++H
Sbjct: 4033 S-----QCSELEDLTANTNTQD-----------PFLIG--------SSKQMRHQSESQGV 4140
Query: 1490 ATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLN 1549
+ D + + ++ + S L A+SG T +S SGL+
Sbjct: 4141 GLSDKELVSDDEERGTGLEENNQEEQSMDSNL-------GEAASGCESETSVSEDCSGLS 4299
Query: 1550 -QSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQ 1608
QS+ L Q+ D H ++K +E+ L+ L G + SY
Sbjct: 4300 SQSDILTTQQ-------------RDTMQHNLIKLQQEMA---ELEAVLEQHGSQPSNSYP 4431
Query: 1609 WII----------------------QSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQS 1646
II QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S
Sbjct: 4432 SIISDSSALEDLRNPEQSTSEKGVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARES 4611
Query: 1647 PAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAW 1706
KIF+ EICC GPFT+M T LEW+V+LCGASVVK+L FT +VVVQPDAW
Sbjct: 4612 QDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAW 4791
Query: 1707 MEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLVSQ 1748
E + AI + VVTREWVLDSVA ++CQELD YL+ Q
Sbjct: 4792 TEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 4917
>ref|NM_007306.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-exon4, mRNA
Length = 7224
Score = 325 bits (833), Expect(2) = e-102
Identities = 424/1557 (27%), Positives = 674/1557 (43%), Gaps = 92/1557 (5%)
Frame = +3
Query: 46 FCMFKLLSRKKKGVIQCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSS 105
FCM KLL++KK G QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S
Sbjct: 393 FCMLKLLNQKK-GPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANS 569
Query: 106 RYFPKTSTEVATAELLGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVK 164
F K + E L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N
Sbjct: 570 YNFAKKENN--SPEHLKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGT 740
Query: 165 GSSVRSKKQKCGIEKGVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQ 224
++R+K++ + V IELG+DSSE+ A+ + D+E L+ + S ++
Sbjct: 741 VRTLRTKQRIQPQKTSVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSA 920
Query: 225 PLKLGAKEIILPNVIGETDFLKEALDKKSM--LNITEHIKCNQVNTIEGQSSPLNVFDAD 282
K A E ETD + S LN TE + SS N+
Sbjct: 921 --KKAACEF------SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEP 1076
Query: 283 LLTGQRDGIGNASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE-- 339
T +AS L+++ +S L + M+VE+ + +K+++ L S R KE
Sbjct: 1077 CGTNT-----HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETC 1241
Query: 340 KDICVPSVEDVEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEW 399
D PS E + + D L E++ ++ L P + +V LN SIQKVNEW
Sbjct: 1242 NDRRTPSTE--KKVDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEW 1412
Query: 400 FXXXXXXXXXXXXQNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNK 457
F + +E+ + L++ D S SEK + + A+I +++
Sbjct: 1413 FSRSDELLGSDDSHDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSE 1592
Query: 458 R-WTKQTTYSIEDKIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXX 514
R +K +IEDKIFGKTY ++ N S + + I+ A E +E L N
Sbjct: 1593 RVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRK 1772
Query: 515 XXXXXXSACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL--- 569
L PEDFIKK DL + P+ I E+ + + ++ EN
Sbjct: 1773 RRPTSG----LHPEDFIKKADLA-VQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGD 1937
Query: 570 -LEKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHST 628
++ K E E+ +K AE +S S+ +LELN + K+ K K ST
Sbjct: 1938 SIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---ST 2108
Query: 629 RTRCAIHLV-DRNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXX 682
R A+ LV RN + E I+S S+EE K
Sbjct: 2109 RHIHALELVVSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATG 2288
Query: 683 ITKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGA 742
K + +SD+ PE + + ++C + + ++ ++ +
Sbjct: 2289 AKKSNKPNEQTSKRHDSDTFPELKLTNAPGSF----TKCSNTSELKEFVNPSLPREEKEE 2456
Query: 743 DLEANGIQISSKNSDD-MAKNRSFFNPTFSCQLSNFNS-PSSKAGSQEGEMLGKLFLPQS 800
LE + ++++ D M S + S+ + P + G+QE L ++
Sbjct: 2457 KLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEV----- 2621
Query: 801 PSKTVLHAASILTEEKRSWS-CTVFSQDKGC---CSRNVPKDFRIGKSPMA---KNASEF 853
+ L A TE + S C F KG CS++ D K P+ ++ E
Sbjct: 2622 ---STLGKAK--TEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHSRET 2786
Query: 854 TMEAEDSELDMQYLRNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------ 904
++E E+SELD QYL+N F+ SKRQSF+ + P A C T S L P
Sbjct: 2787 SIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFEC 2966
Query: 905 DQVEERNSKYLKTENLQEEKTTAENLSSVCEKFETCESA----------CVSPVSCFVSS 954
+Q EE K + V +K + ++A C+S S F +
Sbjct: 2967 EQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS--SQFRGN 3140
Query: 955 AACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLR 1014
+ T + + N + L I + + E E ++S E ++
Sbjct: 3141 ETGLITPNKHGL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMG 3302
Query: 1015 LSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSE-----------SNQVEKAEVVDD 1063
+ S S ++N E+ F+ + ++E S+ S++ +AE+ +
Sbjct: 3303 NENIPSTVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRN 3482
Query: 1064 KG-LMQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSE 1122
+G + +L P +Q+ NC+ E K K E V+QTV+T S
Sbjct: 3483 RGPKLNAMLRLGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSP 3635
Query: 1123 FSVREALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAW 1182
+ + + LE+ + SETPD LL D + +E SF + K++SAVF K
Sbjct: 3636 YLISDNLEQPMGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVFSK------ 3794
Query: 1183 VKEVNDSVVSCKP----RSEGIQRFRRRAQKLQXXXXXXXXXXX-LPSFQELMFGKSVST 1237
V +S P + Q +RR A+KL+ LP FQ L+FGK
Sbjct: 3795 --SVQKGELSRSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK---- 3956
Query: 1238 PLQIQKQVTSVVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------ 1284
V ++ S ST+ +ECL++N E+ L S N+C++
Sbjct: 3957 -------VNNIPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHL 4112
Query: 1285 SQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-- 1342
S+E++CS +LFSSQ + E+ L S + + Q K L ++
Sbjct: 4113 SEETKCSASLFSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDE 4292
Query: 1343 -----LNDEYQEDPNMGANLGEA-SGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLK 1396
L + QE+ +M +NLGEA SG +SETS ED SQ +IL+TQQ++ MQ+NL
Sbjct: 4293 ERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLI 4472
Query: 1397 KLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKL 1456
KLQQEMA LEAVL+QHGSQ + P I + LE +R ++ SE T
Sbjct: 4473 KLQQEMAELEAVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS- 4628
Query: 1457 TKASVLPVLCGNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
K+S P +++NP ++ F V +A+++ S G +S+ C S
Sbjct: 4629 QKSSEYP-----ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 4766
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +3
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 4380 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 4559
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 4560 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 4739
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 4740 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 4910
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 4911 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 5066
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 5067 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 5213
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 5214 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 5393
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 5394 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 5573
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 5574 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 5753
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5754 VTREWVLDSVALYQCQELDTYLIPQ 5828
Score = 76.6 bits (187), Expect(2) = e-102
Identities = 31/45 (68%), Positives = 41/45 (90%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCR 45
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCK 276
>gb|AF005068.1|AF005068 Homo sapiens breast and ovarian cancer susceptibility protein splice
variant (BRCA1) mRNA, complete cds
Length = 5693
Score = 295 bits (755), Expect(2) = e-100
Identities = 407/1533 (26%), Positives = 653/1533 (42%), Gaps = 91/1533 (5%)
Frame = +3
Query: 69 VTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAELLGNNSSVI 128
V+ SL+E++RF QL+E LL+ I AF+LDTG+++ +S F K + E L + S+I
Sbjct: 306 VSFMSLQESTRFSQLVEELLKTICAFQLDTGLEYANSYNFAKKENN--SPEHLKDEVSII 479
Query: 129 QSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKGVLIELGTD 188
QS G+RNR + ++ ++ +LE ++ QL+ N ++R+K++ + V IELG+D
Sbjct: 480 QSMGYRNRAKRLLQSEPENPSLETSLSVQLS-NLGTVRTLRTKQRIQPQKTSVYIELGSD 656
Query: 189 SSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIGETDFLKEA 248
SSE+ A+ + D+E L+ + S ++ K A E ETD
Sbjct: 657 SSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSA--KKAACEF------SETDVTNTE 812
Query: 249 LDKKSM--LNITEHIKCNQVNTIEGQSSPLNVFDADLLTGQRDGIGNASPLKND-TSFLK 305
+ S LN TE + SS N+ T +AS L+++ +S L
Sbjct: 813 HHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-----HASSLQHENSSLLL 977
Query: 306 NAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEMCEPMDDSLLEK 363
+ M+VE+ + +K+++ L S R KE D PS E + + D L E+
Sbjct: 978 TKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KKVDLNADPLCER 1151
Query: 364 EPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQNDHAEATDAS 423
+ ++ L P + +V LN SIQKVNEWF + +E+
Sbjct: 1152 KEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKV 1328
Query: 424 GEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIEDKIFGKTY-ERG 479
+ L++ D S SEK + + A+I +++R +K +IEDKIFGKTY ++
Sbjct: 1329 ADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKA 1508
Query: 480 RKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDFIKKKDLEE 538
N S + + I+ A E +E L N L PEDFIKK DL
Sbjct: 1509 SLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHPEDFIKKADLA- 1673
Query: 539 ADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEFKERGLQWKNAA 592
+ P+ I E+ + + ++ EN ++ K E E+ +K A
Sbjct: 1674 VQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKA 1853
Query: 593 EKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLV-DRNPGSFDLAEPLI 651
E +S S+ +LELN + K+ K K STR A+ LV RN + E I
Sbjct: 1854 EPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRNLSPPNCTELQI 2024
Query: 652 NSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNSDSGPEGS 706
+S S+EE K K + +SD+ PE
Sbjct: 2025 DSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELK 2204
Query: 707 VFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDD-MAKNRSF 765
+ + ++C + + ++ ++ + LE + ++++ D M
Sbjct: 2205 LTNAPGSF----TKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERV 2372
Query: 766 FNPTFSCQLSNFNS-PSSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEEKRSWS-CTV 823
S + S+ + P + G+QE L ++ + L A TE + S C
Sbjct: 2373 LQTERSVESSSISLVPGTDYGTQESISLLEV--------STLGKAK--TEPNKCVSQCAA 2522
Query: 824 FSQDKGC---CSRNVPKDFRIGKSPMA---KNASEFTMEAEDSELDMQYLRNIFRSSKRQ 877
F KG CS++ D K P+ ++ E ++E E+SELD QYL+N F+ SKRQ
Sbjct: 2523 FENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHSRETSIEMEESELDAQYLQNTFKVSKRQ 2702
Query: 878 SFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEERNSKYLKTENLQEEKTTAE 928
SF+ + P A C T S L P +Q EE K +
Sbjct: 2703 SFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKNESNIKPVQTVNITA 2882
Query: 929 NLSSVCEKFETCESA----------CVSPVSCFVSSAACVHTVENQDVSKVANHGNLTTL 978
V +K + ++A C+S S F + + T + + N + L
Sbjct: 2883 GFPVVGQKDKPVDNAKCSIKGGSRFCLS--SQFRGNETGLITPNKHGL--LQNPYRIPPL 3050
Query: 979 LRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSNTEEHAFQRT 1038
I + + E E ++S E ++ + S S ++N E+ F+
Sbjct: 3051 FPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVSTISRNNIRENVFKEA 3218
Query: 1039 GLNAVSETYFS-----SESNQVEKAEVVDDKGLMQHFQPS-------PMLCPTACQQNPA 1086
+ ++E S S N++ ++ L ++ +P +L P +Q+
Sbjct: 3219 SSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRRPKLNAMLRLGVLQPEVYKQSLP 3398
Query: 1087 EFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDLSETP 1146
NC+ E K K E V+QTV+T S + + + LE+ + SETP
Sbjct: 3399 GSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQPMGSSHASQVCSETP 3551
Query: 1147 DGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKP----RSEGIQR 1202
D LL D + +E SF + K++SAVF K V +S P + Q
Sbjct: 3552 DDLL-DDGEIKEDTSFAENDIKESSAVFSK--------SVQKGELSRSPSPFTHTHLAQG 3704
Query: 1203 FRRRAQKLQXXXXXXXXXXX-LPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPCS 1261
+RR A+KL+ LP FQ L+FGK V ++ S ST+ +
Sbjct: 3705 YRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNNIPSQSTRHSTV-AT 3848
Query: 1262 ECLNENNEQKTLEAALS-NECASP------------SQESECSVNLFSSQSNMSEESVDG 1308
ECL++N E+ L S N+C++ S+E++CS +LFSSQ + E+
Sbjct: 3849 ECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTAN 4028
Query: 1309 AQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEYQEDPNMGANLGEA- 1360
L S + + Q K L ++ L + QE+ +M +NLGEA
Sbjct: 4029 TNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAA 4208
Query: 1361 SGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVL 1420
SG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LEAVL+QHGSQ +
Sbjct: 4209 SGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSY 4388
Query: 1421 PLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLCGNVTKNP---NSSS 1477
P I + LE +R ++ SE T K+S P +++NP ++
Sbjct: 4389 P-------SIISDSSALEDLRNPEQSTSEKAVLTS-QKSSEYP-----ISQNPEGLSADK 4529
Query: 1478 FSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
F V +A+++ S G +S+ C S
Sbjct: 4530 FEV------SADSSTSKNKEPGVERSSPSKCPS 4610
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +3
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 4224 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 4403
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 4404 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 4583
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 4584 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 4754
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 4755 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 4910
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 4911 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 5057
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 5058 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 5237
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 5238 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 5417
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 5418 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 5597
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5598 VTREWVLDSVALYQCQELDTYLIPQ 5672
Score = 99.8 bits (247), Expect(2) = e-100
Identities = 44/64 (68%), Positives = 56/64 (86%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 127 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 303
Query: 61 QCPL 64
QCPL
Sbjct: 304 QCPL 315
>ref|NM_007302.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta9-10, mRNA
Length = 6986
Score = 371 bits (953), Expect = e-100
Identities = 440/1607 (27%), Positives = 694/1607 (42%), Gaps = 97/1607 (6%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELG------TDSSEEHFILASSTGLEDKEELEEPKSAEKY-GSSCNTQPLKLGAKE 232
V IEL TD + S+ L E+ + EKY GSS + ++
Sbjct: 670 SVYIELAACEFSETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTN 849
Query: 233 IILPNVIGETDFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPLNVFDADLLTGQRDGIG 292
++ E L L K +N+ + CN+ ++ G+
Sbjct: 850 THASSLQHENSSL---LLTKDRMNVEKAEFCNK--------------------SKQPGLA 960
Query: 293 NASPLKNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEM 352
+ + + E + T + K +L+ + E R + K+K C + D E
Sbjct: 961 RS----QHNRWAGSKETCNDRRTPSTEKKVDLNADPLCE-RKEWNKQKLPCSENPRDTE- 1122
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+V LN SIQKVNEWF
Sbjct: 1123 ------------------------------DVPWITLNSSIQKVNEWFSRSDELLGSDDS 1212
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1213 HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1392
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1393 KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1560
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1561 EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1737
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1738 LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 1908
Query: 641 PGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ E I+S S+EE K K +
Sbjct: 1909 LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSK 2088
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+SD+ PE + N ++C + + ++ ++ + LE + ++++
Sbjct: 2089 RHDSDTFPELKL----TNAPGSFTKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAED 2256
Query: 756 SDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKTVLH 807
D M S + S+ + P + G+QE LGK P+K V
Sbjct: 2257 PKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKCVSQ 2430
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
A+ + C S+D +RN + F+ ++ E ++E E+SELD QYL
Sbjct: 2431 CAAFENPKGLIHGC---SKD----NRNDTEGFKYPLGHEVNHSRETSIEMEESELDAQYL 2589
Query: 868 RNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEER------NS 912
+N F+ SKRQSF+ + P A C T S L P +Q EE N
Sbjct: 2590 QNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKNESNI 2769
Query: 913 KYLKTENL--------QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQ 964
K ++T N+ Q++K S+ C S S F + + T
Sbjct: 2770 KPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS------SQFRGNETGLITPNKH 2931
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 2932 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 3093
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 3094 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 3273
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 3274 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 3426
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 3427 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQKGELS 3579
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 3580 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 3726
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 3727 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 3903
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 3904 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 4083
Query: 1348 QEDPNMGANLGE-ASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLE 1406
QE+ +M +NLGE ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LE
Sbjct: 4084 QEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELE 4263
Query: 1407 AVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLC 1466
AVL+QHGSQ + P I + LE +R ++ SE T K+S P
Sbjct: 4264 AVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS-QKSSEYP--- 4410
Query: 1467 GNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 4411 --ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 4527
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +1
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 4141 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 4320
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 4321 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 4500
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 4501 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 4671
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 4672 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 4827
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 4828 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 4974
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 4975 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 5154
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 5155 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 5334
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 5335 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 5514
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5515 VTREWVLDSVALYQCQELDTYLIPQ 5589
>gb|U36475.1|MMU36475 Mus musculus breast and ovarian cancer susceptibility protein (Brca1)
mRNA, complete cds
Length = 6469
Score = 359 bits (922), Expect = 1e-96
Identities = 440/1600 (27%), Positives = 686/1600 (42%), Gaps = 95/1600 (5%)
Frame = +3
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + I +VQNVL AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 27 MDLSAVQIQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 203
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK E+TKRSL+ ++RF QL E LL ++AFELDTG++ + F K + E
Sbjct: 204 QCPLCKNEITKRSLQGSTRFSQLAEELLRIMAAFELDTGMQLTNGFSFSKKRNN--SCER 377
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
L +S+IQS G+RNR R + + TL+ ++ QL++ + SV+ +Q +K
Sbjct: 378 LNEEASIIQSVGYRNRVRRLPQVEPGNATLKDSLGVQLSNLGIV-RSVKKNRQTQPRKKS 554
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 240
V IEL +DSSEE + D+E L+ T P + G + G
Sbjct: 555 VYIELDSDSSEETVTKPGDCSVRDQELLQ-------------TAPQEAGDE--------G 671
Query: 241 ETDFLKEALDK--KSMLNITEHIKCNQVNTIEGQSSP------LNVFDADLLTGQRDGIG 292
+ +EA + + + NI H + +N E ++ ++ +++
Sbjct: 672 KLHSAEEAACEFSEGIRNIEHHQCSDDLNPTENHATERHPEKCQSISISNVCVEPCGTDA 851
Query: 293 NASPLKNDTSFLKNAEE-MDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+ +TS L E+ M+ E+ + +K+++ + S + R K D VPS
Sbjct: 852 HASSLQPETSSLLLIEDRMNAEKAEFCNKSKQPGIAVSQQSRWAASKGTCNDRQVPSTG- 1028
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTK----GLNQSIQKVNEWFXXX-- 403
E P DSL ++ EK P+ CP + +T LN S+QKVNEWF
Sbjct: 1029 -EKVGPNADSLSDR----EKWTHPQ-SLCPENSGATTDVPWITLNSSVQKVNEWFSRTGE 1190
Query: 404 --XXXXXXXXXQNDHAEAT---DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKR 458
+AEA + S E D S S KT+ + ++ ++ R
Sbjct: 1191 MLTSDSASARRHESNAEAAVVLEVSNEVDGGFSS-----SRKTDLVTPDPHHTLMCKSGR 1355
Query: 459 -WTKQTTYSIEDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXX 517
++K +I DKIFGK+Y+R + +I+ E +E N
Sbjct: 1356 DFSKPVEDNISDKIFGKSYQRKGSRPHLNHVTEIIGTFITEPQITQEQPFTNKLKRKRST 1535
Query: 518 XXXSACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEK--------CDENSAVKENPL 569
LQPEDFIKK D R P I E + C EN N
Sbjct: 1536 S------LQPEDFIKKADSAGVQRTPDNINQGTDLMEPNEQAVSTTSNCQENKIAGSN-- 1691
Query: 570 LEKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTR 629
L+K K + E + A+ +S SD ++ELN K+ K R +
Sbjct: 1692 LQKEKSAHPTESLRKEPASTAGAKSISNSVSDLEVELNVHSSKAPKK-----NRLRRKSS 1856
Query: 630 TRCAIHL--VDRNPGSFDLAEPLINSYPSNEEPSK----ADCXXXXXXXXXXXXXXXXXI 683
RCA+ L + RNP AE I+S S+EE K
Sbjct: 1857 IRCALPLEPISRNPSPPTCAELQIDSCGSSEETKKNHSNQQPAGHLREPQLIEDTEPAAD 2036
Query: 684 TKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGAD 743
K+ I++ + SD+ PE + N + C RK Q ++ R G +
Sbjct: 2037 AKKNEPNEHIRKRRASDAFPEEKLM----NKAGLLTSCSSPRKSQGPVN--PSPQRTGTE 2198
Query: 744 -LEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPS 802
LE + S+K D PS K + E +P +
Sbjct: 2199 QLETRQMSDSAKELGDRVLG---------------GEPSGKTTDRSEESTSVSLVPDTDY 2333
Query: 803 KTVLHAASILTEEKRSWSCTVFSQDKGCCSRNV----PKDFRIG-----------KSPM- 846
T ++ S+L ++ T +Q C ++ V PK+ G K P+
Sbjct: 2334 DT-QNSVSVLDAHTVRYARTGSAQ---CMTQFVASENPKELVHGSNNAGSGTEGLKPPLR 2501
Query: 847 -AKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLN-- 900
A N S+ +E EDSELD QYL+N F+ SKRQSF+L+ +P K C V S++L+
Sbjct: 2502 HALNLSQEKVEMEDSELDTQYLQNTFQVSKRQSFALFSKPRSPQKDC-AHSVPSKELSPK 2678
Query: 901 -TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFE-----TCESAC-VSPVSCFVS 953
T+ Q E + + + ++Q T L C++ + C+ C + P S + S
Sbjct: 2679 VTAKGKQKERQGQEEFEISHVQAVAATV-GLPVPCQEGKLAADTMCDRGCRLCPSSHYRS 2855
Query: 954 SAACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKL 1013
+ +S+ ++ + +R ++ D +P + T ST + V ++
Sbjct: 2856 GENGLSATGKSGISQNSHFKQSVSPIR--SSIKTDNRKPLTEGRFERHTSSTEMAVGNEN 3029
Query: 1014 RLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSES-------NQVEKAEVVDDKGL 1066
L S +++ N A Q G ++ E + +S N+ K V
Sbjct: 3030 ILQSTVHTVSLNNRGN----ACQEAGSGSIHEVCSTGDSFPGQLGRNRGPKVNTVPPLDS 3197
Query: 1067 MQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVR 1126
MQ P CQQ+ + L KK + + V S
Sbjct: 3198 MQ---------PGVCQQSVPVSDKYLEIKK--------------QEGEAVCADFSPCLFS 3308
Query: 1127 EALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEV 1186
+ LE+S+ G F SETPD LL D + + SF + + SAVF +G+ +E
Sbjct: 3309 DHLEQSMSG-KVFQVCSETPDDLL-DDVEIQGHTSFGEGDIMERSAVF---NGSILRRES 3473
Query: 1187 --NDSVVSCKPRSEGIQRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTP--LQIQ 1242
+ S V+ +S+ + R R+ + + LP FQ L+ + +TP +
Sbjct: 3474 SRSPSPVTHASKSQSLHRASRKLESSE--ESDSTEDEDLPCFQHLL-SRISNTPELTRCS 3644
Query: 1243 KQVTSVVQSSANPSTLP----CSECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQ 1298
VT + A + P S+C NNE +EA+ ++ S++ CS ++FSSQ
Sbjct: 3645 SAVTQRMPEKAEGTQAPWKGSSSDC---NNEVIMIEASQEHQF---SEDPRCSGSMFSSQ 3806
Query: 1299 SNMSEESVDGAQELKKTLTQVSN-VKKSKEAPQSCSGGLKRLKNN------------LND 1345
+ ++ S A +Q SN + SK+ C L + L +
Sbjct: 3807 HSAAQGSTANAN------SQDSNFIPPSKQRSHQCGNEEAFLSDKELISDNEEMATCLEE 3968
Query: 1346 EYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVL 1405
+ ++ + EASGY+SET+ ED SQ +IL+TQQ+ M+ NL KLQQEMA L
Sbjct: 3969 DNDQEEDSIIPDSEASGYESETNLSEDC----SQSDILTTQQRATMKYNLIKLQQEMAHL 4136
Query: 1406 EAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVL 1465
EAVL+Q G+Q + P P C++ E++ D E ++ A++L
Sbjct: 4137 EAVLEQRGNQPSGHSPSLLADP-CAL-------------EDLP--DLEPNMSGAAIL--T 4262
Query: 1466 CGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNV 1505
N+ +NP S ++K C + GD++S +
Sbjct: 4263 SKNINENPVSQ--NLKSACDDKFQLQHLEGPTSGDDESGM 4376
Score = 231 bits (590), Expect = 4e-58
Identities = 156/416 (37%), Positives = 220/416 (52%), Gaps = 6/416 (1%)
Frame = +3
Query: 1337 KRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLK 1396
+ LK+ +D++Q G G+ +S R P + + +Q
Sbjct: 4293 QNLKSACDDKFQLQHLEGPTSGDD---ESGMGRPSPFKSPLAGSRGSAHGCSRHLQKRNS 4463
Query: 1397 KLQQEM---AVLEAVLKQHGSQDAEVLPLCREL---PYCSIGGTLGLERMRQETENVSEH 1450
Q+E+ A EA + H S LP REL PY G +L S
Sbjct: 4464 PSQEELLQPAGSEASSEPHNSTGQSCLPR-RELEGTPYLGSGISL-----------FSSR 4607
Query: 1451 DSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
D E++ K ++ P S+S ++K P Q A SA A G +K+ V +
Sbjct: 4608 DPESESPKEPA------HIGTTPASTS-ALKIPQGQVAFR---SAAAAGADKAVVGIVSK 4757
Query: 1511 KRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFSNH 1570
K SS ++S+V SGL E + VQKFA K + T ++
Sbjct: 4758 I---------------KPELTSSEERADRDISMVVSGLTPKEVMTVQKFAEKYRLTLTDA 4892
Query: 1571 ITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGD 1630
IT+ TTHVI+KTD E VCERTLKYFLGIAG KW+VSY W+++S +E R+L+ FEVKGD
Sbjct: 4893 ITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVVRSIQERRLLNVHEFEVKGD 5072
Query: 1631 VINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFT 1690
V+ GRNHQGP+R+R+S EK+FK ++ CC PFT+M LE +++LCGASVVK+L T
Sbjct: 5073 VVTGRNHQGPRRSRES-REKLFKGLQVYCCEPFTNMPKDELERMLQLCGASVVKELPSLT 5249
Query: 1691 HKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLV 1746
H + VV+VQP AW E ++ I + +V +WVLDS++ + C++LDAYLV
Sbjct: 5250 HDTGAHLVVIVQPSAWTEDSNCPDIGQLCKARLVMWDWVLDSLSSYRCRDLDAYLV 5417
>gb|U68174.1|MMU68174 Mus musculus breast/ovarian cancer susceptibility protein (BRCA1)
mRNA, complete cds
Length = 5549
Score = 358 bits (919), Expect = 3e-96
Identities = 438/1600 (27%), Positives = 688/1600 (42%), Gaps = 95/1600 (5%)
Frame = +3
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + I +VQNVL AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 111 MDLSAVQIQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 287
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK E+TKRSL+ ++RF QL E LL ++AFELDTG++ + F K + E
Sbjct: 288 QCPLCKNEITKRSLQGSTRFSQLAEELLRIMAAFELDTGMQLTNGFSFSKKRNN--SCER 461
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
L +S+IQS G+RNR R + + TL+ ++ QL++ + SV+ +Q +K
Sbjct: 462 LNEEASIIQSVGYRNRVRRLPQVEPGNATLKDSLGVQLSNLGIV-RSVKKNRQTQPRKKS 638
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 240
V IEL +DSSEE + D+E L+ T P + G + G
Sbjct: 639 VYIELDSDSSEETVTKPGDCSVRDQELLQ-------------TAPQEAGDE--------G 755
Query: 241 ETDFLKEALDK--KSMLNITEHIKCNQVNTIEGQSSP------LNVFDADLLTGQRDGIG 292
+ +EA + + + NI H + +N E ++ ++ +++
Sbjct: 756 KLHSAEEAACEFSEGIRNIEHHQCSDDLNPTENHATERHPEKCQSISISNVCVEPCGTDA 935
Query: 293 NASPLKNDTSFLKNAEE-MDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+ +TS L E+ M+ E+ + +K+++ + S + R K D VPS
Sbjct: 936 HASSLQPETSSLLLIEDRMNAEKAEFCNKSKQPGIAVSQQSRWAASKGTCNDRQVPSTG- 1112
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTK----GLNQSIQKVNEWFXXX-- 403
E P DSL ++ EK P+ CP + +T LN S++KVNEWF
Sbjct: 1113 -EKVGPNADSLSDR----EKWTHPQ-SLCPENSGATTDVPWITLNSSVEKVNEWFSRTGE 1274
Query: 404 --XXXXXXXXXQNDHAEAT---DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKR 458
+AEA + S E D S S KT+ + ++ ++ R
Sbjct: 1275 MLTSDSASARRHESNAEAAVVLEVSNEVDGGFSS-----SRKTDLVTPDPHHTLMCKSGR 1439
Query: 459 -WTKQTTYSIEDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXX 517
++K +I DKIFGK+Y+R + +I+ E +E N
Sbjct: 1440 DFSKPVEDNISDKIFGKSYQRKGSRPHLNHVTEIIGTFITEPQITQEQPFTNKLKRKRST 1619
Query: 518 XXXSACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEK--------CDENSAVKENPL 569
LQPEDFIKK D R P I E + C EN N
Sbjct: 1620 S------LQPEDFIKKADSAGVQRTPDNINQGTDLMEPNEQAVSTTSNCQENQIAGSN-- 1775
Query: 570 LEKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTR 629
L+K K + E + A+ +S SD ++ELN K+ K R +
Sbjct: 1776 LQKEKSAHPTESLRKEPASTAGAKSISNSVSDLEVELNVHSSKAPKK-----NRLRRKSS 1940
Query: 630 TRCAIHL--VDRNPGSFDLAEPLINSYPSNEEPSK----ADCXXXXXXXXXXXXXXXXXI 683
RCA+ L + RNP AE I+S S+EE K
Sbjct: 1941 IRCALPLEPISRNPSPPTCAELQIDSCGSSEETKKNHSNQQPAGHLREPQLIEDTEPAAD 2120
Query: 684 TKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGAD 743
K+ I++ + SD+ PE + N + C RK Q ++ R G +
Sbjct: 2121 AKKNEPNEHIRKRRASDAFPEEKLM----NKAGLLTSCSSPRKSQGPVN--PSPQRTGTE 2282
Query: 744 -LEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPS 802
LE + S+K D PS K + E +P +
Sbjct: 2283 QLETRQMSDSAKELGDRVLG---------------GEPSGKTTDRSEESTSVSLVPDTDY 2417
Query: 803 KTVLHAASILTEEKRSWSCTVFSQDKGCCSRNV----PKDFRIG-----------KSPM- 846
T ++ S+L ++ T +Q C ++ V PK+ G K P+
Sbjct: 2418 DT-QNSVSVLDAHTVRYARTGSAQ---CMTQFVASENPKELVHGSNNAGSGTEGLKPPLR 2585
Query: 847 -AKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLN-- 900
A N S+ +E EDSELD QYL+N F+ SKRQSF+L+ +P K C V S++L+
Sbjct: 2586 HALNLSQEKVEMEDSELDTQYLQNTFQVSKRQSFALFSKPRSPQKDC-AHSVPSKELSPK 2762
Query: 901 -TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFE-TCESAC-----VSPVSCFVS 953
T+ Q E + + + ++Q T L +C++ + ++ C + P S + S
Sbjct: 2763 VTAKGKQKERQGQEEFEISHVQAVAATV-GLPVLCQEGKLAADTMCDRGSRLCPSSHYRS 2939
Query: 954 SAACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKL 1013
+ +S+ ++ + +R ++ D +P + T ST + V ++
Sbjct: 2940 GENGLSATGKSGISQNSHFKQSVSPIR--SSIKTDNRKPLTEGRFERHTSSTEMAVGNEN 3113
Query: 1014 RLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSES-------NQVEKAEVVDDKGL 1066
L S +++ N A Q G ++ E + +S N+ K V
Sbjct: 3114 ILQSTVHTVSLNNRGN----ACQEAGSGSIHEVCSTGDSFPGQLGRNRGPKVNTVPPLDS 3281
Query: 1067 MQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVR 1126
MQ P CQQ+ + L KK + + V S
Sbjct: 3282 MQ---------PGVCQQSVPVSDKYLEIKK--------------QEGEAVCADFSPCLFS 3392
Query: 1127 EALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEV 1186
+ LE+S+ G F SETPD LL D + + SF + + SAVF +G+ +E
Sbjct: 3393 DHLEQSMSG-KVFQVCSETPDDLL-DDVEIQGHTSFGEGDIMERSAVF---NGSILRRES 3557
Query: 1187 --NDSVVSCKPRSEGIQRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTP--LQIQ 1242
+ S V+ +S+ + R R+ + + LP FQ L+ + +TP + +
Sbjct: 3558 SRSPSPVTHASKSQSLHRASRKLESSE--ESDSTEDEDLPCFQHLL-SRISNTPELTRCR 3728
Query: 1243 KQVTSVVQSSANPSTLP----CSECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQ 1298
VT + A + P S+C NNE +EA+ ++ S++ CS +FSSQ
Sbjct: 3729 SAVTQGIPEKAEGTQAPWKGSSSDC---NNEVIMIEASQEHQF---SEDPRCSGRMFSSQ 3890
Query: 1299 SNMSEESVDGAQELKKTLTQVSN-VKKSKEAPQSCSGGLKRLKNN------------LND 1345
++ ++ S A +Q SN + SK+ C L + L +
Sbjct: 3891 NSAAQGSTANAN------SQDSNFIPPSKQRSHQCGNEEAFLSDKELISDNEEMATCLEE 4052
Query: 1346 EYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVL 1405
+ ++ + EASGY+SET+ ED SQ +IL+TQQ+ M+ NL KLQQEMA L
Sbjct: 4053 DNDQEEDSIIPDSEASGYESETNLSEDC----SQSDILTTQQRATMKYNLIKLQQEMAHL 4220
Query: 1406 EAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVL 1465
EAVL+Q G+Q + P P C++ E++ D E ++ A++L
Sbjct: 4221 EAVLEQRGNQPSGHSPSLLADP-CAL-------------EDLP--DLEPNMSGAAIL--T 4346
Query: 1466 CGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNV 1505
N+ +NP S ++K C + GD++S +
Sbjct: 4347 SKNINENPVSQ--NLKSACDDKFQLQHLEGPTSGDDESGM 4460
Score = 231 bits (590), Expect = 4e-58
Identities = 156/416 (37%), Positives = 220/416 (52%), Gaps = 6/416 (1%)
Frame = +3
Query: 1337 KRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLK 1396
+ LK+ +D++Q G G+ +S R P + + +Q
Sbjct: 4377 QNLKSACDDKFQLQHLEGPTSGDD---ESGMGRPSPFKSPLAGSRGSAHGCSRHLQKRNS 4547
Query: 1397 KLQQEM---AVLEAVLKQHGSQDAEVLPLCREL---PYCSIGGTLGLERMRQETENVSEH 1450
Q+E+ A EA + H S LP REL PY G +L S
Sbjct: 4548 PSQEELLQPAGSEASSEPHNSTGQSCLPR-RELEGTPYLGSGISL-----------FSSR 4691
Query: 1451 DSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
D E++ K ++ P S+S ++K P Q A SA A G +K+ V +
Sbjct: 4692 DPESESPKEPA------HIGTTPASTS-ALKIPQGQVAFR---SAAAAGADKAVVGIVSK 4841
Query: 1511 KRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFSNH 1570
K SS ++S+V SGL E + VQKFA K + T ++
Sbjct: 4842 I---------------KPELTSSEERADRDISMVVSGLTPKEVMTVQKFAEKYRLTLTDA 4976
Query: 1571 ITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGD 1630
IT+ TTHVI+KTD E VCERTLKYFLGIAG KW+VSY W+++S +E R+L+ FEVKGD
Sbjct: 4977 ITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVVRSIQERRLLNVHEFEVKGD 5156
Query: 1631 VINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFT 1690
V+ GRNHQGP+R+R+S EK+FK ++ CC PFT+M LE +++LCGASVVK+L T
Sbjct: 5157 VVTGRNHQGPRRSRES-REKLFKGLQVYCCEPFTNMPKDELERMLQLCGASVVKELPSLT 5333
Query: 1691 HKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLV 1746
H + VV+VQP AW E ++ I + +V +WVLDS++ + C++LDAYLV
Sbjct: 5334 HDTGAHLVVIVQPSAWTEDSNCPDIGQLCKARLVMWDWVLDSLSSYRCRDLDAYLV 5501
>ref|NM_012514.1| Rattus norvegicus Breast cancer 1 (Brca1), mRNA
Length = 5607
Score = 357 bits (916), Expect = 6e-96
Identities = 414/1576 (26%), Positives = 671/1576 (42%), Gaps = 70/1576 (4%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + I +VQNVL AMQK LECP+CL++IKEPVST+CDH+FC+FCM KLL+ +KKG
Sbjct: 118 MDLSAVRIQEVQNVLHAMQKILECPICLELIKEPVSTQCDHIFCKFCMLKLLN-QKKGPS 294
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK E+TKRSL+ ++RF QL+E LL+ I AFELDTG++ + F K +++EL
Sbjct: 295 QCPLCKNEITKRSLQGSARFSQLVEELLKIIDAFELDTGMQCANGFSFSKKKN--SSSEL 468
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
L ++S+IQS G+RNR + ++ S TL+ ++ QL++ + S++ +Q K
Sbjct: 469 LNEDASIIQSVGYRNRVKKLQQIESGSATLKDSLSVQLSNLGIV-RSMKKNRQTQPQNKS 645
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELE-EPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V I L +DSSEE + D+E + P A G KL + +
Sbjct: 646 VYIALESDSSEERVNAPDGCSVRDQELFQIAPGGAGDEG--------KLNSAK------- 780
Query: 240 GETDFLKEALDKKSMLNITEHIKCN--QVNTIEGQSSPLN------VFDADLLTGQRDGI 291
K A D + EH +C+ +N E ++ + + A++
Sbjct: 781 ------KAACDFSEGIRNIEHHQCSDKDLNPTENHATERHPEKCPRISVANVHVEPCGTD 942
Query: 292 GNASPLKNDT-SFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDV 350
AS L+ T S L + +D E+ + ++++ S + R KE P
Sbjct: 943 ARASSLQRGTRSLLFTEDRLDAEKAEFCDRSKQSGAAVSQQSRWADSKETCNGRPVPRTE 1122
Query: 351 EMCEPMDDSLL-EKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+P DSL K+ K L P+ T +V LN SIQKVNEWF
Sbjct: 1123 GKADPNVDSLCGRKQWNHPKSLCPENSGATT--DVPWITLNSSIQKVNEWFSRTGEMLTS 1296
Query: 410 XXXQNDHAEATDASGEGDISLSDK-DSCI--SEKTNPIVDSVEFAVIERNKR-WTKQTTY 465
+D A++A + +S++ D C S+K + + + AV+ + R ++K
Sbjct: 1297 DNA-SDRRPASNAEAAVVLEVSNEVDGCFSSSKKIDLVAPDPDNAVMCTSGRDFSKPVEN 1473
Query: 466 SIEDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACIL 525
I DKIFGKTY+R + +I+ E +E N S C L
Sbjct: 1474 IINDKIFGKTYQRKGSRPHLNHVTEIIGTFTTEPQIIQEQPFTNK-----LKRKRSTC-L 1635
Query: 526 QPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTL------- 578
PEDFIKK DL R + + G + E D+ ++ N + G+ L
Sbjct: 1636 HPEDFIKKADLTVVQRISENLNQ--GTDQMEPNDQAMSITSNGQENRATGNDLQRGRNAH 1809
Query: 579 -AEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL- 636
E + + A+ +S SD ++ELN K+ K K TRC + L
Sbjct: 1810 PIESLRKEPAFTAKAKSISNSISDLEVELNVHSSKAPK------KNRLRRKSTRCVLPLE 1971
Query: 637 -VDRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ RNP AE I S S+EE K + + +T + +
Sbjct: 1972 PISRNPSPPTCAELQIESCGSSEETKKNN-------------------SNQTPAGHIREP 2094
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
D+ P E N + D ++ +++ L + + G S
Sbjct: 2095 QLIEDTEPAADAKKNEPNEHIRKRSASDAFPEEKLMNKAGLLTSCSSPRKPQGPVNPSPE 2274
Query: 756 SDDMAKNRSFFNPTFSCQLSNF---NSPSSKAGSQEGEMLGKLFLPQSP-----SKTVLH 807
+ + P + +L + PS K E +P + S ++L
Sbjct: 2275 RKGIEQLEMCQMPDNNKELGDLVLGGEPSGKPTEPSEESTSVSLVPDTDYDTQNSVSILE 2454
Query: 808 AASILTEEKRSWSC-TVFSQDKG-----CCSRNVPKDFRIGKSPMAK--NASEFTMEAED 859
A ++ S C T F + S N K P+ N ++ T+E ED
Sbjct: 2455 ANTVRYARTGSVQCMTQFVASENPKELVHGSNNAGSGSECFKHPLRHELNHNQETIEMED 2634
Query: 860 SELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLN------TSCPDQVEER 910
SELD QYL+N F+ SKRQSF+L+ +P K CT S TS +Q E +
Sbjct: 2635 SELDTQYLQNTFQVSKRQSFALFSKLRSPQKDCTLVGARSVPSREPSPKVTSRGEQKERQ 2814
Query: 911 NSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSA---ACVHTVENQDVS 967
+ + ++Q T L C++ + + VS S+ +C + + D S
Sbjct: 2815 GQEESEISHVQAVTVTV-GLPVPCQEGKPGAVTMCADVSRLCPSSHYRSCENGLNTTDKS 2991
Query: 968 KVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQ 1027
++ + + + + + NR E EK G+G E+ ++ + +
Sbjct: 2992 GISQNSHFRQSVSPLRSSIKTDNRKTLTEGRFEKHTERGMGNETAVQ------STIHTIS 3153
Query: 1028 SNTEEHAFQRTGLNAVSETYFSSESNQVE----KAEVVDDKGLMQHFQPSPMLCPTACQQ 1083
N A +V E + + E+ Q + + V+ L+ QP
Sbjct: 3154 LNNRGDACLEASSGSVIEVHSTGENVQGQLDRNRGPKVNTVSLLDSTQP----------- 3300
Query: 1084 NPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDLS 1143
++ + +++K + ++ S + VS S + LE+ ++ F S
Sbjct: 3301 GVSKQSAPVSDKYLEIKQES----------KAVSADFSPCLFSDHLEKPMRSDKTFQVCS 3450
Query: 1144 ETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEV--NDSVVSCKPRSEGIQ 1201
ETPD LL D + +E+ASF + SA+F +G+ +E + S V+ +S +
Sbjct: 3451 ETPDDLL-DDVEIQENASFGEGGITEKSAIF---NGSVLRRESSRSPSPVTHASKSRSLH 3618
Query: 1202 RFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTP--LQIQKQVTSVVQSSANPSTLP 1259
R R+ + + LP FQ L+ + STP + VT V A + P
Sbjct: 3619 RGSRKLEFSE--ESDSTEDEDLPCFQHLL-SRVSSTPELTRCSSVVTQRVPEKAKGTQAP 3789
Query: 1260 CSECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQV 1319
+++ N + L A ++ S++++CS ++FSSQ + + S A
Sbjct: 3790 RKSSISDCNNEVILGEA--SQEYQFSEDAKCSGSMFSSQHSAALGSPANALSQDPDFNPP 3963
Query: 1320 SNVKKSKEAPQSCSGGLKRLKNNLND---------EYQEDPNMGANLGEASGYDSETSRV 1370
S ++ + + K L ++ D + +ED + ++ ASGY+SE +
Sbjct: 3964 SKQRRHQAENEEAFLSDKELISDHEDMAACLEEASDQEEDSIIPDSV--ASGYESEANLS 4137
Query: 1371 EDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCS 1430
ED SQ +IL+TQQ+ M++NL KLQQEMA LEAVL+QHGSQ + P C C+
Sbjct: 4138 EDC----SQSDILTTQQRATMKDNLIKLQQEMAQLEAVLEQHGSQPSG-HPPCLPADPCA 4302
Query: 1431 IGGTLGLERMRQETENVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEA 1490
+ E+ R T ++ N+ +NP S + K C ++
Sbjct: 4303 LEDLPDPEQNRSGTAILTSK-----------------NINENPVSQ--NPKRACDDKSQP 4425
Query: 1491 TDSSAVAQGDNKSNVQ 1506
+ GD +S ++
Sbjct: 4426 QPPDGLPSGDKESGMR 4473
Score = 233 bits (595), Expect = 1e-58
Identities = 161/482 (33%), Positives = 235/482 (48%), Gaps = 4/482 (0%)
Frame = +1
Query: 1269 EQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEA 1328
E LEA L + PS C + E+ D Q ++ T + K E
Sbjct: 4216 EMAQLEAVLEQHGSQPSGHPPC----LPADPCALEDLPDPEQN--RSGTAILTSKNINEN 4377
Query: 1329 PQSCSGGLKRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQK 1388
P S + K +D+ Q P G G+ +S R P + +
Sbjct: 4378 PVS-----QNPKRACDDKSQPQPPDGLPSGDK---ESGMRRPSPFKSPLTSSRCSARGHS 4533
Query: 1389 NAMQNNLKKLQQEM---AVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETE 1445
++QN Q+E+ A LE + H LP RQ+ E
Sbjct: 4534 RSLQNRNSTSQEELLQPAXLEKSCEPHNLTGRSCLP-------------------RQDLE 4656
Query: 1446 NVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNV 1505
+S +L + ++P+S S V +T + ++QG +
Sbjct: 4657 GTPYPESGIRLVSS-----------RDPDSESPKVSALVCTAPASTSALKISQGQVAGS- 4800
Query: 1506 QVCKSKRSVCFPTSVLHNVAG-KENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQ 1564
C+S + T+V+ V+ K S ++S+V SGL E ++VQKFA K +
Sbjct: 4801 --CRSPAAGGADTAVVEIVSKIKPEVTSPKERAERDISMVVSGLTPKEVMIVQKFAEKYR 4974
Query: 1565 STFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEH 1624
++ IT+ TTHVI+KTD E VCERTLKYFLGIAG KW+VSY W+I+S +E ++L
Sbjct: 4975 LALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQERKLLSVHE 5154
Query: 1625 FEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVK 1684
FEVKGDV+ G NHQGP+R+R+S EK+F+ +I CC PFT+M LE +++LCGASVVK
Sbjct: 5155 FEVKGDVVTGSNHQGPRRSRES-QEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVK 5331
Query: 1685 QLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAY 1744
+L L T + +V+VQP AW E I + +V +WVLDS++ + C++LDAY
Sbjct: 5332 ELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAY 5511
Query: 1745 LV 1746
LV
Sbjct: 5512 LV 5517
>gb|AF036760.1|AF036760 Rattus norvegicus BRCA1 mRNA, complete cds
Length = 5607
Score = 357 bits (916), Expect = 6e-96
Identities = 414/1576 (26%), Positives = 671/1576 (42%), Gaps = 70/1576 (4%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + I +VQNVL AMQK LECP+CL++IKEPVST+CDH+FC+FCM KLL+ +KKG
Sbjct: 118 MDLSAVRIQEVQNVLHAMQKILECPICLELIKEPVSTQCDHIFCKFCMLKLLN-QKKGPS 294
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK E+TKRSL+ ++RF QL+E LL+ I AFELDTG++ + F K +++EL
Sbjct: 295 QCPLCKNEITKRSLQGSARFSQLVEELLKIIDAFELDTGMQCANGFSFSKKKN--SSSEL 468
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
L ++S+IQS G+RNR + ++ S TL+ ++ QL++ + S++ +Q K
Sbjct: 469 LNEDASIIQSVGYRNRVKKLQQIESGSATLKDSLSVQLSNLGIV-RSMKKNRQTQPQNKS 645
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELE-EPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V I L +DSSEE + D+E + P A G KL + +
Sbjct: 646 VYIALESDSSEERVNAPDGCSVRDQELFQIAPGGAGDEG--------KLNSAK------- 780
Query: 240 GETDFLKEALDKKSMLNITEHIKCN--QVNTIEGQSSPLN------VFDADLLTGQRDGI 291
K A D + EH +C+ +N E ++ + + A++
Sbjct: 781 ------KAACDFSEGIRNIEHHQCSDKDLNPTENHATERHPEKCPRISVANVHVEPCGTD 942
Query: 292 GNASPLKNDT-SFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDV 350
AS L+ T S L + +D E+ + ++++ S + R KE P
Sbjct: 943 ARASSLQRGTRSLLFTEDRLDAEKAEFCDRSKQSGAAVSQQSRWADSKETCNGRPVPRTE 1122
Query: 351 EMCEPMDDSLL-EKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+P DSL K+ K L P+ T +V LN SIQKVNEWF
Sbjct: 1123 GKADPNVDSLCGRKQWNHPKSLCPENSGATT--DVPWITLNSSIQKVNEWFSRTGEMLTS 1296
Query: 410 XXXQNDHAEATDASGEGDISLSDK-DSCI--SEKTNPIVDSVEFAVIERNKR-WTKQTTY 465
+D A++A + +S++ D C S+K + + + AV+ + R ++K
Sbjct: 1297 DNA-SDRRPASNAEAAVVLEVSNEVDGCFSSSKKIDLVAPDPDNAVMCTSGRDFSKPVEN 1473
Query: 466 SIEDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACIL 525
I DKIFGKTY+R + +I+ E +E N S C L
Sbjct: 1474 IINDKIFGKTYQRKGSRPHLNHVTEIIGTFTTEPQIIQEQPFTNK-----LKRKRSTC-L 1635
Query: 526 QPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTL------- 578
PEDFIKK DL R + + G + E D+ ++ N + G+ L
Sbjct: 1636 HPEDFIKKADLTVVQRISENLNQ--GTDQMEPNDQAMSITSNGQENRATGNDLQRGRNAH 1809
Query: 579 -AEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL- 636
E + + A+ +S SD ++ELN K+ K K TRC + L
Sbjct: 1810 PIESLRKEPAFTAKAKSISNSISDLEVELNVHSSKAPK------KNRLRRKSTRCVLPLE 1971
Query: 637 -VDRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
+ RNP AE I S S+EE K + + +T + +
Sbjct: 1972 PISRNPSPPTCAELQIESCGSSEETKKNN-------------------SNQTPAGHIREP 2094
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
D+ P E N + D ++ +++ L + + G S
Sbjct: 2095 QLIEDTEPAADAKKNEPNEHIRKRSASDAFPEEKLMNKAGLLTSCSSPRKPQGPVNPSPE 2274
Query: 756 SDDMAKNRSFFNPTFSCQLSNF---NSPSSKAGSQEGEMLGKLFLPQSP-----SKTVLH 807
+ + P + +L + PS K E +P + S ++L
Sbjct: 2275 RKGIEQLEMCQMPDNNKELGDLVLGGEPSGKPTEPSEESTSVSLVPDTDYDTQNSVSILE 2454
Query: 808 AASILTEEKRSWSC-TVFSQDKG-----CCSRNVPKDFRIGKSPMAK--NASEFTMEAED 859
A ++ S C T F + S N K P+ N ++ T+E ED
Sbjct: 2455 ANTVRYARTGSVQCMTQFVASENPKELVHGSNNAGSGSECFKHPLRHELNHNQETIEMED 2634
Query: 860 SELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLN------TSCPDQVEER 910
SELD QYL+N F+ SKRQSF+L+ +P K CT S TS +Q E +
Sbjct: 2635 SELDTQYLQNTFQVSKRQSFALFSKLRSPQKDCTLVGARSVPSREPSPKVTSRGEQKERQ 2814
Query: 911 NSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSA---ACVHTVENQDVS 967
+ + ++Q T L C++ + + VS S+ +C + + D S
Sbjct: 2815 GQEESEISHVQAVTVTV-GLPVPCQEGKPGAVTMCADVSRLCPSSHYRSCENGLNTTDKS 2991
Query: 968 KVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQ 1027
++ + + + + + NR E EK G+G E+ ++ + +
Sbjct: 2992 GISQNSHFRQSVSPLRSSIKTDNRKTLTEGRFEKHTERGMGNETAVQ------STIHTIS 3153
Query: 1028 SNTEEHAFQRTGLNAVSETYFSSESNQVE----KAEVVDDKGLMQHFQPSPMLCPTACQQ 1083
N A +V E + + E+ Q + + V+ L+ QP
Sbjct: 3154 LNNRGDACLEASSGSVIEVHSTGENVQGQLDRNRGPKVNTVSLLDSTQP----------- 3300
Query: 1084 NPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDLS 1143
++ + +++K + ++ S + VS S + LE+ ++ F S
Sbjct: 3301 GVSKQSAPVSDKYLEIKQES----------KAVSADFSPCLFSDHLEKPMRSDKTFQVCS 3450
Query: 1144 ETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEV--NDSVVSCKPRSEGIQ 1201
ETPD LL D + +E+ASF + SA+F +G+ +E + S V+ +S +
Sbjct: 3451 ETPDDLL-DDVEIQENASFGEGGITEKSAIF---NGSVLRRESSRSPSPVTHASKSRSLH 3618
Query: 1202 RFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTP--LQIQKQVTSVVQSSANPSTLP 1259
R R+ + + LP FQ L+ + STP + VT V A + P
Sbjct: 3619 RGSRKLEFSE--ESDSTEDEDLPCFQHLL-SRVSSTPELTRCSSVVTQRVPEKAKGTQAP 3789
Query: 1260 CSECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQV 1319
+++ N + L A ++ S++++CS ++FSSQ + + S A
Sbjct: 3790 RKSSISDCNNEVILGEA--SQEYQFSEDAKCSGSMFSSQHSAALGSPANALSQDPDFNPP 3963
Query: 1320 SNVKKSKEAPQSCSGGLKRLKNNLND---------EYQEDPNMGANLGEASGYDSETSRV 1370
S ++ + + K L ++ D + +ED + ++ ASGY+SE +
Sbjct: 3964 SKQRRHQAENEEAFLSDKELISDHEDMAACLEEASDQEEDSIIPDSV--ASGYESEANLS 4137
Query: 1371 EDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCS 1430
ED SQ +IL+TQQ+ M++NL KLQQEMA LEAVL+QHGSQ + P C C+
Sbjct: 4138 EDC----SQSDILTTQQRATMKDNLIKLQQEMAQLEAVLEQHGSQPSG-HPPCLPADPCA 4302
Query: 1431 IGGTLGLERMRQETENVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEA 1490
+ E+ R T ++ N+ +NP S + K C ++
Sbjct: 4303 LEDLPDPEQNRSGTAILTSK-----------------NINENPVSQ--NPKRACDDKSQP 4425
Query: 1491 TDSSAVAQGDNKSNVQ 1506
+ GD +S ++
Sbjct: 4426 QPPDGLPSGDKESGMR 4473
Score = 233 bits (595), Expect = 1e-58
Identities = 161/482 (33%), Positives = 235/482 (48%), Gaps = 4/482 (0%)
Frame = +1
Query: 1269 EQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEA 1328
E LEA L + PS C + E+ D Q ++ T + K E
Sbjct: 4216 EMAQLEAVLEQHGSQPSGHPPC----LPADPCALEDLPDPEQN--RSGTAILTSKNINEN 4377
Query: 1329 PQSCSGGLKRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQK 1388
P S + K +D+ Q P G G+ +S R P + +
Sbjct: 4378 PVS-----QNPKRACDDKSQPQPPDGLPSGDK---ESGMRRPSPFKSPLTSSRCSARGHS 4533
Query: 1389 NAMQNNLKKLQQEM---AVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETE 1445
++QN Q+E+ A LE + H LP RQ+ E
Sbjct: 4534 RSLQNRNSTSQEELLQPAXLEKSCEPHNLTGRSCLP-------------------RQDLE 4656
Query: 1446 NVSEHDSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNV 1505
+S +L + ++P+S S V +T + ++QG +
Sbjct: 4657 GTPYPESGIRLVSS-----------RDPDSESPKVSALVCTAPASTSALKISQGQVAGS- 4800
Query: 1506 QVCKSKRSVCFPTSVLHNVAG-KENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQ 1564
C+S + T+V+ V+ K S ++S+V SGL E ++VQKFA K +
Sbjct: 4801 --CRSPAAGGADTAVVEIVSKIKPEVTSPKERAERDISMVVSGLTPKEVMIVQKFAEKYR 4974
Query: 1565 STFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEH 1624
++ IT+ TTHVI+KTD E VCERTLKYFLGIAG KW+VSY W+I+S +E ++L
Sbjct: 4975 LALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQERKLLSVHE 5154
Query: 1625 FEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVK 1684
FEVKGDV+ G NHQGP+R+R+S EK+F+ +I CC PFT+M LE +++LCGASVVK
Sbjct: 5155 FEVKGDVVTGSNHQGPRRSRES-QEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVK 5331
Query: 1685 QLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAY 1744
+L L T + +V+VQP AW E I + +V +WVLDS++ + C++LDAY
Sbjct: 5332 ELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAY 5511
Query: 1745 LV 1746
LV
Sbjct: 5512 LV 5517
>gb|U31625.1|MMU31625 Mus musculus breast/ovarian cancer susceptibility homolog (Brca1)
mRNA, complete cds
Length = 5702
Score = 356 bits (914), Expect = 1e-95
Identities = 441/1603 (27%), Positives = 687/1603 (42%), Gaps = 98/1603 (6%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + I +VQNVL AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 64 MDLSAVQIQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 240
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK E+TKRSL+ ++RF QL E LL ++AFELDTG++ + F K + E
Sbjct: 241 QCPLCKNEITKRSLQGSTRFSQLAEELLRIMAAFELDTGMQLTNGFSFSKKRNN--SCER 414
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
L +S+IQS G+RNR R + + TL+ ++ QL++ + SV+ +Q +K
Sbjct: 415 LNEEASIIQSVGYRNRVRRLPQVEPGNATLKDSLGVQLSNLGIV-RSVKKNRQTQPRKKS 591
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 240
V IEL +DSSEE + D+E L+ T P + G + G
Sbjct: 592 VYIELDSDSSEETVTKPGDCSVRDQELLQ-------------TAPQEAGDE--------G 708
Query: 241 ETDFLKEALDK--KSMLNITEHIKCNQVNTIEGQSSP------LNVFDADLLTGQRDGIG 292
+ +EA + + + NI H + +N E ++ ++ +++
Sbjct: 709 KLHSAEEAACEFSEGIRNIEHHQCSDDLNPTENHATERHPEKCQSISISNVCVEPCGTDA 888
Query: 293 NASPLKNDTSFLKNAEE-MDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+ +TS L E+ M+ E+ + +K+++ + S + R K D VPS
Sbjct: 889 HASSLQPETSSLLLIEDRMNAEKAEFCNKSKQPGIAVSQQSRWAASKGTCNDRQVPSTG- 1065
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTK----GLNQSIQKVNEWFXXX-- 403
E P DSL ++ EK P+ CP + +T LN S+QKVNEWF
Sbjct: 1066 -EKVGPNADSLSDR----EKWTHPQ-SLCPENSGATTDVPWITLNSSVQKVNEWFSRTGE 1227
Query: 404 --XXXXXXXXXQNDHAEAT---DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKR 458
+AEA + S E D S S KT+ + ++ ++ R
Sbjct: 1228 MLTSDSASARRHESNAEAAVVLEVSNEVDGGFSS-----SRKTDLVTPDPHHTLMCKSGR 1392
Query: 459 -WTKQTTYSIEDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXX 517
++K +I DKIFGK+Y+R + +I+ E +E N
Sbjct: 1393 DFSKPVEDNISDKIFGKSYQRKGSRPHLNHVTEIIGTFITEPQITQEQPFTNKLKRKRST 1572
Query: 518 XXXSACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEK--------CDENSAVKENPL 569
LQPEDFIKK D R P I E + C EN N
Sbjct: 1573 S------LQPEDFIKKADSAGVQRTPDNINQGTDLMEPNEQAVSTTSNCQENKIAGSN-- 1728
Query: 570 LEKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTR 629
L+K K + E + A+ +S SD ++ELN K+ K R +
Sbjct: 1729 LQKEKSAHPTESLRKEPASTAGAKSISNSVSDLEVELNVHSSKAPKK-----NRLRRKSS 1893
Query: 630 TRCAIHL--VDRNPGSFDLAEPLINSYPSNEEPSK----ADCXXXXXXXXXXXXXXXXXI 683
RCA+ L + RNP AE I+S S+EE K
Sbjct: 1894 IRCALPLEPISRNPSPPTCAELQIDSCGSSEETKKNHSNQQPAGHLREPQLIEDTEPAAD 2073
Query: 684 TKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGAD 743
K+ I++ + SD+ PE + N + C RK Q ++ R G +
Sbjct: 2074 AKKNEPNEHIRKRRASDAFPEEKLM----NKAGLLTSCSSPRKSQGPVN--PSPQRTGTE 2235
Query: 744 -LEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPS 802
LE + S+K D PS K + E + +
Sbjct: 2236 QLETRQMSDSAKELGDRVLG---------------GEPSGKTTDRSEESTSVSLVSDTDY 2370
Query: 803 KTVLHAASILTEEKRSWSCTVFSQDKGCCSRNV----PKDFRIG-----------KSPM- 846
T ++ S+L ++ T +Q C ++ V PK+ G K P+
Sbjct: 2371 DT-QNSVSVLDAHTVRYARTGSAQ---CMTQFVASENPKELVHGSNNAGSGTEGLKPPLR 2538
Query: 847 -AKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLN-- 900
A N S+ +E EDSELD QYL+N F+ SKRQSF+L+ +P K C V S++L+
Sbjct: 2539 HALNLSQEKVEMEDSELDTQYLQNTFQVSKRQSFALFSKPRSPQKDC-AHSVPSKELSPK 2715
Query: 901 -TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFE-----TCESAC-VSPVSCFVS 953
T+ Q E + + + ++Q T L C++ + C+ C + P S + S
Sbjct: 2716 VTAKGKQKERQGQEEFEISHVQAVAATV-GLPVPCQEGKLAADTMCDRGCRLCPSSHYRS 2892
Query: 954 SAACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKL 1013
+ +S+ ++ + +R ++ D +P + T ST + V ++
Sbjct: 2893 GENGLSATGKSGISQNSHFKQSVSPIR--SSIKTDNRKPLTEGRFERHTSSTEMAVGNEN 3066
Query: 1014 RLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSES-------NQVEKAEVVDDKGL 1066
L S +++ N A Q G ++ E + +S N+ K V
Sbjct: 3067 ILQSTVHTVSLNNRGN----ACQEAGSGSIHEVCSTGDSFPGQLGRNRGPKVNTVPPLDS 3234
Query: 1067 MQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVR 1126
MQ P CQQ+ + L KK Q ++FS R
Sbjct: 3235 MQ---------PGVCQQSVPVSDKYLEIKK-----------------QEGEAVCADFSPR 3336
Query: 1127 ---EALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWV 1183
+ LE+S+ G F SETPD LL D + + SF + + SAVF +G+
Sbjct: 3337 LFSDHLEQSMSG-KVFQVCSETPDDLL-DDVEIQGHTSFGEGDIMERSAVF---NGSILR 3501
Query: 1184 KEV--NDSVVSCKPRSEGIQRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTP--L 1239
+E + S V+ +S+ + R R+ + + LP FQ L+ + +TP
Sbjct: 3502 RESSRSPSPVTHASKSQSLHRASRKLESSE--ESDSTEDEDLPCFQHLL-SRISNTPELT 3672
Query: 1240 QIQKQVTSVVQSSANPSTLP----CSECLNENNEQKTLEAALSNECASPSQESECSVNLF 1295
+ VT + A + P S+C NNE +EA+ ++ S++ CS ++F
Sbjct: 3673 RCSSAVTQRMPEKAEGTQAPWKGSSSDC---NNEVIMIEASQEHQF---SEDPRCSGSMF 3834
Query: 1296 SSQSNMSEESVDGAQELKKTLTQVSN-VKKSKEAPQSCSGGLKRLKNN------------ 1342
SSQ + ++ S A +Q SN + SK+ C L +
Sbjct: 3835 SSQHSAAQGSTANAN------SQDSNFIPPSKQRSHQCGNEEAFLSDKELISDNEEMATC 3996
Query: 1343 LNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEM 1402
L ++ ++ + EASGY+SET+ ED SQ +IL+TQQ+ M+ NL KLQQEM
Sbjct: 3997 LEEDNDQEEDSIIPDSEASGYESETNLSEDC----SQSDILTTQQRATMKYNLIKLQQEM 4164
Query: 1403 AVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVL 1462
A LEAVL+Q G+Q + P P C++ E++ D E ++ A++L
Sbjct: 4165 AHLEAVLEQRGNQPSGHSPSLLADP-CAL-------------EDLP--DLEPNMSGAAIL 4296
Query: 1463 PVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNV 1505
N+ +NP S ++K C + GD++S +
Sbjct: 4297 --TSKNINENPVSQ--NLKSACDDKFQLQHLEGPTSGDDESGM 4413
Score = 230 bits (586), Expect = 1e-57
Identities = 156/416 (37%), Positives = 219/416 (52%), Gaps = 6/416 (1%)
Frame = +1
Query: 1337 KRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLK 1396
+ LK+ +D++Q G G+ +S R P + + +Q
Sbjct: 4330 QNLKSACDDKFQLQHLEGPTSGDD---ESGMGRPSPFKSPLAGSRGSAHGCSRHLQKRNS 4500
Query: 1397 KLQQEM---AVLEAVLKQHGSQDAEVLPLCREL---PYCSIGGTLGLERMRQETENVSEH 1450
Q+E+ A EA + H S LP REL PY G +L S
Sbjct: 4501 PSQEELLQPAGSEASSEPHNSTGQSCLPR-RELEGTPYLGSGISL-----------FSSR 4644
Query: 1451 DSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
D E++ K ++ P S+S ++K P Q A SA A G +K+ V +
Sbjct: 4645 DPESESPKEPA------HIGTTPASTS-ALKIPQGQVAFR---SAAAAGADKAVVGIVSK 4794
Query: 1511 KRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFSNH 1570
K SS ++S+V SGL E + VQKFA K + T ++
Sbjct: 4795 I---------------KPELTSSEERADRDISMVVSGLTPKEVMTVQKFAEKYRLTLTDA 4929
Query: 1571 ITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGD 1630
IT+ TTHVI+KTD E VCERTLKYFLGIAG KW+VSY W+++S +E R+L+ FEVKGD
Sbjct: 4930 ITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVVRSIQERRLLNVHEFEVKGD 5109
Query: 1631 VINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFT 1690
V+ GRNHQGP+R+R+S EK+FK ++ CC PFT+M LE +++LCGASVVK+L T
Sbjct: 5110 VVTGRNHQGPRRSRES-REKLFKGLQVYCCEPFTNMPKDELERMLQLCGASVVKELPSLT 5286
Query: 1691 HKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLV 1746
H + VV+VQP AW E ++ I + +V +WVLDS++ + C+ LDAYLV
Sbjct: 5287 HDTGAHLVVIVQPSAWTEDSNCPDIGQLCKARLVMWDWVLDSLSSYRCRGLDAYLV 5454
>gb|U32446.1|MMU32446 Mus musculus putative breast/ovarian cancer susceptibility protein
homolog (Brca1) mRNA, complete cds
Length = 5555
Score = 356 bits (913), Expect = 1e-95
Identities = 437/1600 (27%), Positives = 687/1600 (42%), Gaps = 95/1600 (5%)
Frame = +3
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + I +VQNVL AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 117 MDLSAVQIQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 293
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK E+TKRSL+ ++RF QL E LL ++A ELDTG++ + F K + E
Sbjct: 294 QCPLCKNEITKRSLQGSTRFSQLAEELLRIMAALELDTGMQLTNGFSFSKKRNN--SCER 467
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
L +S+IQS G+RNR R + + TL+ ++ QL++ + SV+ +Q +K
Sbjct: 468 LNEEASIIQSVGYRNRVRRLPQVEPGNATLKDSLGVQLSNLGIV-RSVKKNRQTQPRKKS 644
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 240
V IEL +DSSEE + D+E L+ T P + G + G
Sbjct: 645 VYIELDSDSSEETVTKPGDCSVRDQELLQ-------------TAPQEAGDE--------G 761
Query: 241 ETDFLKEALDK--KSMLNITEHIKCNQVNTIEGQSSP------LNVFDADLLTGQRDGIG 292
+ +EA + + + NI H + +N E ++ ++ +++
Sbjct: 762 KLHSAEEAACEFSEGIRNIEHHQCSDDLNPTENHATERHPEKCQSISISNVCVEPCGTDA 941
Query: 293 NASPLKNDTSFLKNAEE-MDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+ +TS L E+ M+ E+ + +K+++ + S + R K D VPS
Sbjct: 942 HASSLQPETSSLLLIEDRMNAEKAEFCNKSKQPGIAVSQQSRWAASKGTCNDRQVPSTG- 1118
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTK----GLNQSIQKVNEWFXXX-- 403
E P DSL ++ EK P+ CP + +T LN S++KVNEWF
Sbjct: 1119 -EKVGPNADSLSDR----EKWTHPQ-SLCPENSGATTDVPWITLNSSVEKVNEWFSRTGE 1280
Query: 404 --XXXXXXXXXQNDHAEAT---DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKR 458
+AEA + S E D S S KT+ + ++ ++ R
Sbjct: 1281 MLTSDSASARRHESNAEAAVVLEVSNEVDGGFSS-----SRKTDLVTPDPHHTLMCKSGR 1445
Query: 459 -WTKQTTYSIEDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXX 517
++K +I DKIFGK+Y+R + +I+ E +E N
Sbjct: 1446 DFSKPVEDNISDKIFGKSYQRKGSRPHLNHVTEIIGTFITEPQITQEQPFTNKLKRKRST 1625
Query: 518 XXXSACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEK--------CDENSAVKENPL 569
LQPEDFIKK D R P I E + C EN N
Sbjct: 1626 S------LQPEDFIKKADSAGVQRTPDNINQGTDLMEPNEQAVSTTSNCQENQIAGSN-- 1781
Query: 570 LEKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTR 629
L+K K + E + A+ +S SD ++ELN K+ K R +
Sbjct: 1782 LQKEKSAHPTESLRKEPASTAGAKSISNSVSDLEVELNVHSSKAPKK-----NRLRRKSS 1946
Query: 630 TRCAIHL--VDRNPGSFDLAEPLINSYPSNEEPSK----ADCXXXXXXXXXXXXXXXXXI 683
RCA+ L + RNP AE I+S S+EE K
Sbjct: 1947 IRCALPLEPISRNPSPPTCAELQIDSCGSSEETKKNHSNQQPAGHLREPQLIEDTEPAAD 2126
Query: 684 TKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGAD 743
K+ I++ + SD+ PE + N + C RK Q ++ R G +
Sbjct: 2127 AKKNEPNEHIRKRRASDAFPEEKLM----NKAGLLTSCSSPRKSQGPVN--PSPQRTGTE 2288
Query: 744 -LEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPS 802
LE + S+K D PS K + E +P +
Sbjct: 2289 QLETRQMSDSAKELGDRVLG---------------GEPSGKTTDRSEESTSVSLVPDTDY 2423
Query: 803 KTVLHAASILTEEKRSWSCTVFSQDKGCCSRNV----PKDFRIG-----------KSPM- 846
T ++ S+L ++ T +Q C ++ V PK+ G K P+
Sbjct: 2424 DT-QNSVSVLDAHTVRYARTGSAQ---CMTQFVASENPKELVHGSNNAGSGTEGLKPPLR 2591
Query: 847 -AKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLN-- 900
A N S+ +E EDSELD QYL+N F+ SKRQSF+L+ +P K C V S++L+
Sbjct: 2592 HALNLSQEKVEMEDSELDTQYLQNTFQVSKRQSFALFSKPRSPQKDC-AHSVPSKELSPK 2768
Query: 901 -TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFE-TCESAC-----VSPVSCFVS 953
T+ Q E + + + ++Q T L +C++ + ++ C + P S + S
Sbjct: 2769 VTAKGKQKERQGQEEFEISHVQAVAATV-GLPVLCQEGKLAADTMCDRGSRLCPSSHYRS 2945
Query: 954 SAACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKL 1013
+ +S+ ++ + +R ++ D +P + T ST + V ++
Sbjct: 2946 GENGLSATGKSGISQNSHFKQSVSPIR--SSIKTDNRKPLTEGRFERHTSSTEMAVGNEN 3119
Query: 1014 RLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSES-------NQVEKAEVVDDKGL 1066
L S +++ N A Q G ++ E + +S N+ K V
Sbjct: 3120 ILQSTVHTVSLNNRGN----ACQEAGSGSIHEVCSTGDSFPGQLGRNRGPKVNTVPPLDS 3287
Query: 1067 MQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVR 1126
MQ P CQQ+ + L KK + + V S
Sbjct: 3288 MQ---------PGVCQQSVPVSDKYLEIKK--------------QEGEAVCADFSPCLFS 3398
Query: 1127 EALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEV 1186
+ LE+S+ G F SETPD LL D + + SF + + SAVF +G+ +E
Sbjct: 3399 DHLEQSMSG-KVFQVCSETPDDLL-DDVEIQGHTSFGEGDIMERSAVF---NGSILRRES 3563
Query: 1187 --NDSVVSCKPRSEGIQRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTP--LQIQ 1242
+ S V+ +S+ + R R+ + + LP FQ L+ + +TP + +
Sbjct: 3564 SRSPSPVTHASKSQSLHRASRKLESSE--ESDSTEDEDLPCFQHLL-SRISNTPELTRCR 3734
Query: 1243 KQVTSVVQSSANPSTLP----CSECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQ 1298
VT + A + P S+C NNE +EA+ ++ S++ CS +FSSQ
Sbjct: 3735 SAVTQGIPEKAEGTQAPWKGSSSDC---NNEVIMIEASQEHQF---SEDPRCSGRMFSSQ 3896
Query: 1299 SNMSEESVDGAQELKKTLTQVSN-VKKSKEAPQSCSGGLKRLKNN------------LND 1345
++ ++ S A +Q SN + SK+ C L + L +
Sbjct: 3897 NSAAQGSTANAN------SQDSNFIPPSKQRSHQCGNEEAFLSDKELISDNEEMATCLEE 4058
Query: 1346 EYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVL 1405
+ ++ + EASGY+SET+ ED SQ +IL+TQQ+ M+ NL KLQQEMA L
Sbjct: 4059 DNDQEEDSIIPDSEASGYESETNLSEDC----SQSDILTTQQRATMKYNLIKLQQEMAHL 4226
Query: 1406 EAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVL 1465
EAVL+Q G+Q + P P C++ E++ D E ++ A++L
Sbjct: 4227 EAVLEQRGNQPSGHSPSLLADP-CAL-------------EDLP--DLEPNMSGAAIL--T 4352
Query: 1466 CGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNV 1505
N+ +NP S ++K C + GD++S +
Sbjct: 4353 SKNINENPVSQ--NLKSACDDKFQLQHLEGPTSGDDESGM 4466
Score = 231 bits (590), Expect = 4e-58
Identities = 156/416 (37%), Positives = 220/416 (52%), Gaps = 6/416 (1%)
Frame = +3
Query: 1337 KRLKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLK 1396
+ LK+ +D++Q G G+ +S R P + + +Q
Sbjct: 4383 QNLKSACDDKFQLQHLEGPTSGDD---ESGMGRPSPFKSPLAGSRGSAHGCSRHLQKRNS 4553
Query: 1397 KLQQEM---AVLEAVLKQHGSQDAEVLPLCREL---PYCSIGGTLGLERMRQETENVSEH 1450
Q+E+ A EA + H S LP REL PY G +L S
Sbjct: 4554 PSQEELLQPAGSEASSEPHNSTGQSCLPR-RELEGTPYLGSGISL-----------FSSR 4697
Query: 1451 DSETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
D E++ K ++ P S+S ++K P Q A SA A G +K+ V +
Sbjct: 4698 DPESESPKEPA------HIGTTPASTS-ALKIPQGQVAFR---SAAAAGADKAVVGIVSK 4847
Query: 1511 KRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFSNH 1570
K SS ++S+V SGL E + VQKFA K + T ++
Sbjct: 4848 I---------------KPELTSSEERADRDISMVVSGLTPKEVMTVQKFAEKYRLTLTDA 4982
Query: 1571 ITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGD 1630
IT+ TTHVI+KTD E VCERTLKYFLGIAG KW+VSY W+++S +E R+L+ FEVKGD
Sbjct: 4983 ITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVVRSIQERRLLNVHEFEVKGD 5162
Query: 1631 VINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFT 1690
V+ GRNHQGP+R+R+S EK+FK ++ CC PFT+M LE +++LCGASVVK+L T
Sbjct: 5163 VVTGRNHQGPRRSRES-REKLFKGLQVYCCEPFTNMPKDELERMLQLCGASVVKELPSLT 5339
Query: 1691 HKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLV 1746
H + VV+VQP AW E ++ I + +V +WVLDS++ + C++LDAYLV
Sbjct: 5340 HDTGAHLVVIVQPSAWTEDSNCPDIGQLCKARLVMWDWVLDSLSSYRCRDLDAYLV 5507
>gb|U35641.1|MMU35641 Mus musculus Brca1 mRNA, complete cds
Length = 5538
Score = 353 bits (905), Expect = 1e-94
Identities = 436/1594 (27%), Positives = 678/1594 (42%), Gaps = 89/1594 (5%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + I +VQNVL AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 100 MDLSAVQIQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 276
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK E+TKRSL+ ++RF QL E LL ++AFELDTG++ + F K + E
Sbjct: 277 QCPLCKNEITKRSLQGSTRFSQLAEELLRIMAAFELDTGMQLTNGFSFSKKRNN--SCER 450
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
L +S+IQS G+RNR R + + TL+ ++ QL++ + SV+ +Q +K
Sbjct: 451 LNEEASIIQSVGYRNRVRRLPQVEPGNATLKDSLGVQLSNLGIV-RSVKKNRQTQPRKKS 627
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 240
V IEL +DSSEE + D+E L+ T P + G + G
Sbjct: 628 VYIELDSDSSEETVTKPGDCSVRDQELLQ-------------TAPQEAGDE--------G 744
Query: 241 ETDFLKEALDK--KSMLNITEHIKCNQVNTIEGQSSP------LNVFDADLLTGQRDGIG 292
+ +EA + + + NI H + +N E ++ ++ +++
Sbjct: 745 KLHSAEEAACEFSEGIRNIEHHQCSDDLNPTENHATERHPEKCQSISISNVCVEPCGTDA 924
Query: 293 NASPLKNDTSFLKNAEE-MDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+ +TS L E+ M+ E+ + +K ++ + S + R K D VPS
Sbjct: 925 HASSLQPETSSLLLIEDRMNAEKAEFCNKTKQPGIAVSQQSRWPASKGTCNDRQVPSTG- 1101
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTK----GLNQSIQKVNEWFXXX-- 403
E P DSL ++ EK P+ CP + +T LN S+QKVNEWF
Sbjct: 1102 -EKVGPNADSLSDR----EKWTHPQ-SLCPENSGATTDVPWITLNSSVQKVNEWFSRTGE 1263
Query: 404 --XXXXXXXXXQNDHAEAT---DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKR 458
+AEA + S E D S S KT+ + ++ ++ R
Sbjct: 1264 MLTSDSASARRHESNAEAAVVLEVSNEVDGGFSS-----SRKTDLVTPDPHHTLMCKSGR 1428
Query: 459 -WTKQTTYSIEDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXX 517
++K +I DKIFGK+Y+R + +I+ E +E N
Sbjct: 1429 DFSKPVEDNISDKIFGKSYQRKGSRPHLNHVTEIIGTFITEPQITQEQPFTNKLKRKRST 1608
Query: 518 XXXSACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEK--------CDENSAVKENPL 569
LQPEDFIKK D R P I E + C EN N
Sbjct: 1609 S------LQPEDFIKKADSAGVQRTPDNINQGTDLMEPNEQAVSTTSNCQENKIAGSN-- 1764
Query: 570 LEKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTR 629
L+K K + E + A+ +S SD ++ELN K+ K R +
Sbjct: 1765 LQKEKSAHPTESLRKEPASTAGAKSISNSVSDLEVELNVHSSKAPKK-----NRLRRKSS 1929
Query: 630 TRCAIHL--VDRNPGSFDLAEPLINSYPSNEEPSK----ADCXXXXXXXXXXXXXXXXXI 683
RCA+ L + RNP AE I+S S+EE K
Sbjct: 1930 IRCALPLEPISRNPSPPTCAELQIDSCGSSEETKKNHSNQQAAGHLREPQLIEDTEPAAD 2109
Query: 684 TKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGAD 743
K+ I++ + SD+ PE + N + C RK Q ++ R G +
Sbjct: 2110 AKKNEPNEHIRKRRASDAFPEEKLM----NKAGLLTSCSSPRKSQGPVN--PSPQRTGTE 2271
Query: 744 -LEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPS 802
LE + S+K D PS K + E + +
Sbjct: 2272 QLETRQMSDSAKELGDRVLG---------------GEPSGKTTDRSEESTSVSLVSDTDY 2406
Query: 803 KTVLHAASILTEEKRSWSCTVFSQDKGCCSRNV----PKDFRIG-----------KSPM- 846
T ++ S+L ++ T +Q C ++ V PK+ G K P+
Sbjct: 2407 DT-QNSVSVLDAHTVRYARTGSAQ---CMTQFVASENPKELVHGSNNAGSGTEGLKPPLR 2574
Query: 847 -AKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLN-- 900
A N S+ +E EDSELD QYL+N F+ SKRQSF+L+ +P K C V S++L+
Sbjct: 2575 HALNLSQEKVEMEDSELDTQYLQNTFQVSKRQSFALFSKPRSPQKDC-AHSVPSKELSPK 2751
Query: 901 -TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFE-----TCESAC-VSPVSCFVS 953
T+ Q E + + + ++Q T L C++ + C+ C + P S + S
Sbjct: 2752 VTAKGKQKERQGQEEFEISHVQAVAATV-GLPVPCQEGKLAADTMCDRGCRLCPSSHYRS 2928
Query: 954 SAACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKL 1013
+ +S+ ++ + +R ++ D +P + T ST + V ++
Sbjct: 2929 GENGLSATGKSGISQNSHFKQSVSPIR--SSIKTDNRKPLTEGRFERHTSSTEMAVGNEN 3102
Query: 1014 RLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSES-------NQVEKAEVVDDKGL 1066
L S +++ N A Q G ++ E + +S N+ K V
Sbjct: 3103 ILQSTVHTVSLNNRGN----ACQEAGSGSIHEVCSTGDSFPGQLGRNRGPKVNTVPPLDS 3270
Query: 1067 MQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVR 1126
MQ P CQQ+ + L KK + + V S
Sbjct: 3271 MQ---------PGVCQQSVPVSDKYLEIKK--------------QEGEAVCADFSPCLFS 3381
Query: 1127 EALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEV 1186
+ LE+S+ G F SETPD LL D + + SF + + SAVF +G+ +E
Sbjct: 3382 DHLEQSMSG-KVFQVCSETPDDLL-DDVEKQGHTSFGEGDIMERSAVF---NGSILRRES 3546
Query: 1187 --NDSVVSCKPRSEGIQRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTP--LQIQ 1242
+ S V+ +S+ + R R+ + + LP FQ L+ + +TP +
Sbjct: 3547 SRSPSPVTHASKSQSLHRASRKLESSE--ESDSTEDEDLPCFQHLL-SRISNTPELTRCS 3717
Query: 1243 KQVTSVVQSSANPSTLP----CSECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQ 1298
VT + A + P S+C NNE +EA+ ++ S++ CS ++FSSQ
Sbjct: 3718 SAVTQRMPEKAEGTQAPWKGSSSDC---NNEVIMIEASQEHQF---SEDPRCSGSMFSSQ 3879
Query: 1299 SNMSEESVDGAQELKKTL----TQVSNVKKSKEA---PQSCSGGLKRLKNNLNDEYQEDP 1351
+ + S A TQ S+ ++EA + + + L ++ ++
Sbjct: 3880 HSAVQGSTPNANSQDSNFIPPSTQRSHQCGNEEAFLSDKELISDNEEMATCLEEDNDQEE 4059
Query: 1352 NMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLEAVLKQ 1411
+ EASGY+SET+ ED SQ +IL TQ+ M+ NL KLQQEMA LEAVL+Q
Sbjct: 4060 DSIIPDSEASGYESETTLSEDC----SQSDILPTQEGATMKYNLIKLQQEMAHLEAVLEQ 4227
Query: 1412 HGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLCGNVTK 1471
G+Q + P +G LE + N+S A++L N+ +
Sbjct: 4228 RGNQSSGHSP-------SLLGDPCALEDLPVLEPNMS---------GAAIL--TSKNINE 4353
Query: 1472 NPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNV 1505
NP S ++K C + GD++S +
Sbjct: 4354 NPVSQ--NLKSACDDKFQLQHLEGPTSGDDESGM 4449
Score = 229 bits (583), Expect = 3e-57
Identities = 112/220 (50%), Positives = 152/220 (68%)
Frame = +1
Query: 1527 KENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEEL 1586
K SS ++S+V SGL E + VQKFA K + T ++ IT+ TTHVI+KTD E
Sbjct: 4834 KPELTSSEERADRDISMVVSGLTPKEVMTVQKFAEKYRLTLTDAITEETTHVIIKTDAEF 5013
Query: 1587 VCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQS 1646
VCERTLKYFLGIAG KW+VSY W+++S +E R+L+ FEV GDV+ GRNHQGP+R+R+S
Sbjct: 5014 VCERTLKYFLGIAGGKWIVSYSWVVRSIQERRLLNVHEFEVTGDVVTGRNHQGPRRSRES 5193
Query: 1647 PAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAW 1706
EK+FK ++ CC PFT+M LE +++LCGASVVK+L TH + VV+VQP AW
Sbjct: 5194 -REKLFKGLQVYCCDPFTNMPKDDLERMLQLCGASVVKELPSLTHDTGAHLVVIVQPSAW 5370
Query: 1707 MEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLV 1746
E ++ I + +V +WVLDS++ + C++LDAYLV
Sbjct: 5371 TEDSNCPDIGQLCKARLVMWDWVLDSLSSYRCRDLDAYLV 5490
>ref|NM_007298.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta9-11, mRNA
Length = 3559
Score = 282 bits (721), Expect = 3e-73
Identities = 215/600 (35%), Positives = 293/600 (48%), Gaps = 33/600 (5%)
Frame = +1
Query: 1182 WVKEVNDSVVSCKPRSEGIQR--FRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVS--- 1236
+ K+ N+S K IQ +R RA++L PS QE +S
Sbjct: 460 FAKKENNSPEHLKDEVSIIQSMGYRNRAKRLLQSEPEN------PSLQETSLSVQLSNLG 621
Query: 1237 ------TPLQIQKQVTSVVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASPSQESE 1289
T +IQ Q TSV + S C +E + + S ++ + Q
Sbjct: 622 TVRTLRTKQRIQPQKTSVYIELGEAA----SGCESETSVSEDCSGLSSQSDILTTQQRDT 789
Query: 1290 CSVNLFSSQSNMSE-ESV---DGAQELKK--TLTQVSNVKKSKEAPQSCSGGLKRLKNNL 1343
NL Q M+E E+V G+Q ++ S+ + P+ + L +
Sbjct: 790 MQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALEDLRNPEQSTSEKAVLTSQK 969
Query: 1344 NDEY---QEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQK-------NAMQN 1393
+ EY Q + A+ E S S + E E S + S + ++QN
Sbjct: 970 SSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVERSSPSKCPSLDDRWYMHSCSGSLQN 1149
Query: 1394 NLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSE 1449
Q+E+ V E L++ G D L LP + GT LE + E
Sbjct: 1150 RNYPSQEELIKVVDVEEQQLEESGPHD---LTETSYLPRQDLEGTPYLESGISLFSDDPE 1320
Query: 1450 HD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVC 1508
D SE + +++ + GN+ SS+ ++K P + AE+ S A A + +
Sbjct: 1321 SDPSEDRAPESARV----GNIP----SSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAM 1476
Query: 1509 KSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFS 1568
+ S K +S MS+V SGL E ++V KFARK T +
Sbjct: 1477 EESVS-----------REKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLT 1623
Query: 1569 NHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVK 1628
N IT+ TTHV+MKTD E VCERTLKYFLGIAG KWVVSY W+ QS KE ++L+E FEV+
Sbjct: 1624 NLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVR 1803
Query: 1629 GDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHL 1688
GDV+NGRNHQGPKRAR+S KIF+ EICC GPFT+M T LEW+V+LCGASVVK+L
Sbjct: 1804 GDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSS 1983
Query: 1689 FTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLVSQ 1748
FT +VVVQPDAW E + AI + VVTREWVLDSVA ++CQELD YL+ Q
Sbjct: 1984 FTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 2163
Score = 177 bits (449), Expect = 9e-42
Identities = 129/389 (33%), Positives = 214/389 (54%), Gaps = 12/389 (3%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG +++G E + + E S G S + L ++ + N+I
Sbjct: 670 SVYIELG----------EAASGCESETSVSEDCS----GLSSQSDILTTQQRDTMQHNLI 807
Query: 240 GETDFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPL--------NVFDADLLTGQRDGI 291
+E + +++L N +I SS L + + +LT Q+
Sbjct: 808 ---KLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALEDLRNPEQSTSEKAVLTSQK--- 969
Query: 292 GNASPLKNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEK---DICVPSVE 348
+ P+ + L +A++ +V + KN+E +E SS + + ++ C S++
Sbjct: 970 SSEYPISQNPEGL-SADKFEVSADSSTSKNKEPGVERSSPSKCPSLDDRWYMHSCSGSLQ 1146
Query: 349 DVEMCEPMDDSLLEKEPPVEKPLQPKIPH 377
+ P + L++ E+ L+ PH
Sbjct: 1147NRNY--PSQEELIKVVDVEEQQLEESGPH 1227
>ref|NM_007305.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta9-10-11b, mRNA
Length = 3676
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +1
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 832 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 1011
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 1012 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 1191
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 1192 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 1362
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 1363 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 1518
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 1519 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 1665
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 1666 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 1845
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 1846 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 2025
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 2026 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 2205
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 2206 VTREWVLDSVALYQCQELDTYLIPQ 2280
Score = 174 bits (441), Expect = 8e-41
Identities = 133/411 (32%), Positives = 217/411 (52%), Gaps = 34/411 (8%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELG------TDSSEEHFILASSTGLEDKEELEEPKSAEKY----GSSCNTQP---- 225
V IEL TD + S+ L E+ + EKY S C ++
Sbjct: 670 SVYIELAACEFSETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGEAASGCESETSVSE 849
Query: 226 --LKLGAKEIILPNVIGET------DFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPL- 276
L ++ IL +T +E + +++L N +I SS L
Sbjct: 850 DCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALE 1029
Query: 277 -------NVFDADLLTGQRDGIGNASPLKNDTSFLKNAEEMDVEETQCSHKNQELDLEDS 329
+ + +LT Q+ + P+ + L +A++ +V + KN+E +E S
Sbjct: 1030DLRNPEQSTSEKAVLTSQK---SSEYPISQNPEGL-SADKFEVSADSSTSKNKEPGVERS 1197
Query: 330 SEGRLDKIKEK---DICVPSVEDVEMCEPMDDSLLEKEPPVEKPLQPKIPH 377
S + + ++ C S+++ P + L++ E+ L+ PH
Sbjct: 1198SPSKCPSLDDRWYMHSCSGSLQNRNY--PSQEELIKVVDVEEQQLEESGPH 1344
Score = 76.3 bits (186), Expect = 3e-11
Identities = 85/295 (28%), Positives = 131/295 (43%), Gaps = 15/295 (5%)
Frame = +1
Query: 1231 FGKSVSTPLQIQKQVTSVVQSSANPSTLPCSECLNENNEQKTLEAALSNECASPS-QESE 1289
F K + + K S++QS + N K L L +E +PS QE+
Sbjct: 460 FAKKENNSPEHLKDEVSIIQS------------MGYRNRAKRL---LQSEPENPSLQETS 594
Query: 1290 CSVNLFSSQSNMSEESVDGAQELKKTL-----------TQVSNVKKSKEAPQSCSGGLKR 1338
SV L + + + + Q K ++ T V+N + + + + KR
Sbjct: 595 LSVQLSNLGTVRTLRTKQRIQPQKTSVYIELAACEFSETDVTNTEHHQPSNNDLNTTEKR 774
Query: 1339 LKNNLNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKL 1398
++YQ + ASG +SETS ED SQ +IL+TQQ++ MQ+NL KL
Sbjct: 775 AAERHPEKYQGEA--------ASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKL 930
Query: 1399 QQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTK 1458
QQEMA LEAVL+QHGSQ + P I + LE +R ++ SE T K
Sbjct: 931 QQEMAELEAVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS-QK 1086
Query: 1459 ASVLPVLCGNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+S P +++NP ++ F V +A+++ S G +S+ C S
Sbjct: 1087 SSEYP-----ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 1218
>ref|NM_007297.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta2-10, mRNA
Length = 6419
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +2
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 3575 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 3754
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 3755 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 3934
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 3935 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 4105
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 4106 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 4261
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 4262 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 4408
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 4409 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 4588
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 4589 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 4768
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 4769 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 4948
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 4949 VTREWVLDSVALYQCQELDTYLIPQ 5023
Score = 236 bits (602), Expect = 2e-59
Identities = 340/1307 (26%), Positives = 545/1307 (41%), Gaps = 89/1307 (6%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S R KE D PS E
Sbjct: 287 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE- 463
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ + D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 464 -KKVDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGS 637
Query: 410 XXXQNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYS 466
+ +E+ + L++ D S SEK + + A+I +++R +K +
Sbjct: 638 DDSHDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESN 817
Query: 467 IEDKIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACI 524
IEDKIFGKTY ++ N S + + I+ A E +E L N
Sbjct: 818 IEDKIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG---- 985
Query: 525 LQPEDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTL 578
L PEDFIKK DL + P+ I E+ + + ++ EN ++ K
Sbjct: 986 LHPEDFIKKADLA-VQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNP 1162
Query: 579 AEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLV- 637
E E+ +K AE +S S+ +LELN + K+ K K STR A+ LV
Sbjct: 1163 IESLEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVV 1333
Query: 638 DRNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMRV 692
RN + E I+S S+EE K K
Sbjct: 1334 SRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQ 1513
Query: 693 IKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQIS 752
+ +SD+ PE + + ++C + + ++ ++ + LE + +
Sbjct: 1514 TSKRHDSDTFPELKLTNAPGSF----TKCSNTSELKEFVNPSLPREEKEEKLETVKVSNN 1681
Query: 753 SKNSDD-MAKNRSFFNPTFSCQLSNFNS-PSSKAGSQEGEMLGKLFLPQSPSKTVLHAAS 810
+++ D M S + S+ + P + G+QE L ++ + L A
Sbjct: 1682 AEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEV--------STLGKAK 1837
Query: 811 ILTEEKRSWS-CTVFSQDKGC---CSRNVPKDFRIGKSPMA---KNASEFTMEAEDSELD 863
TE + S C F KG CS++ D K P+ ++ E ++E E+SELD
Sbjct: 1838 --TEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHSRETSIEMEESELD 2011
Query: 864 MQYLRNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEERNSKY 914
QYL+N F+ SKRQSF+ + P A C T S L P +Q EE K
Sbjct: 2012 AQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKN 2191
Query: 915 LKTENLQEEKTTAENLSSVCEKFETCESA----------CVSPVSCFVSSAACVHTVENQ 964
+ V +K + ++A C+S S F + + T
Sbjct: 2192 ESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS--SQFRGNETGLITPNKH 2365
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 2366 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 2527
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSSE-----------SNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 2528 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 2707
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 2708 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 2860
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 2861 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVFSK--------SVQKGELS 3013
Query: 1193 CKP----RSEGIQRFRRRAQKLQXXXXXXXXXXX-LPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 3014 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 3160
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 3161 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 3337
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 3338 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 3517
Query: 1348 QEDPNMGANLGEA-SGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLE 1406
QE+ +M +NLGEA SG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA LE
Sbjct: 3518 QEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELE 3697
Query: 1407 AVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVLC 1466
AVL+QHGSQ + P I + LE +R ++ SE T K+S P
Sbjct: 3698 AVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS-QKSSEYP--- 3844
Query: 1467 GNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 3845 --ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 3961
>ref|NM_007303.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta11, mRNA
Length = 3682
Score = 281 bits (718), Expect = 6e-73
Identities = 193/505 (38%), Positives = 262/505 (51%), Gaps = 30/505 (5%)
Frame = +1
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQELKK--TLTQ 1318
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 838 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIIS 1017
Query: 1319 VSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSHE 1375
S+ + P+ + L + + EY Q + A+ E S S + E E
Sbjct: 1018 DSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVE 1197
Query: 1376 PFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLCR 1424
S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 1198 RSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTETS 1368
Query: 1425 ELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKHP 1483
LP + GT LE + E D SE + +++ + GN+ SS+ ++K P
Sbjct: 1369 YLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKVP 1524
Query: 1484 CPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMSI 1543
+ AE+ S A A + + + S K +S MS+
Sbjct: 1525 QLKVAESAQSPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMSM 1671
Query: 1544 VASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKW 1603
V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG KW
Sbjct: 1672 VVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKW 1851
Query: 1604 VVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGPF 1663
VVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GPF
Sbjct: 1852 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPF 2031
Query: 1664 TDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVAV 1723
T+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI + V
Sbjct: 2032 TNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 2211
Query: 1724 VTREWVLDSVACFECQELDAYLVSQ 1748
VTREWVLDSVA ++CQELD YL+ Q
Sbjct: 2212 VTREWVLDSVALYQCQELDTYLIPQ 2286
Score = 182 bits (461), Expect = 4e-43
Identities = 100/210 (47%), Positives = 149/210 (70%), Gaps = 1/210 (0%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELE 209
V IELG+DSSE+ A+ + D+E L+
Sbjct: 670 SVYIELGSDSSEDTVNKATYCSVGDQELLQ 759
Score = 75.5 bits (184), Expect = 5e-11
Identities = 90/294 (30%), Positives = 131/294 (43%), Gaps = 14/294 (4%)
Frame = +1
Query: 1231 FGKSVSTPLQIQKQVTSVVQSSA---NPSTLPCSECLNENNEQKTLEAALSN-------E 1280
F K + + K S++QS L SE N + ++ +L LSN
Sbjct: 460 FAKKENNSPEHLKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLR 639
Query: 1281 CASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLK 1340
Q + SV + S+ SE++V+ K T V + + + PQ
Sbjct: 640 TKQRIQPQKTSVYI-ELGSDSSEDTVN-----KATYCSVGDQELLQITPQGT-------- 777
Query: 1341 NNLNDEYQEDPNMGANLGEA-SGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQ 1399
DE D A GEA SG +SETS ED SQ +IL+TQQ++ MQ+NL KLQ
Sbjct: 778 ---RDEISLD---SAKKGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQ 939
Query: 1400 QEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKA 1459
QEMA LEAVL+QHGSQ + P I + LE +R ++ SE T K+
Sbjct: 940 QEMAELEAVLEQHGSQPSNSYP-------SIISDSSALEDLRNPEQSTSEKAVLTS-QKS 1095
Query: 1460 SVLPVLCGNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
S P +++NP ++ F V +A+++ S G +S+ C S
Sbjct: 1096 SEYP-----ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 1224
>gb|U64805.1|HSU64805 Homo sapiens Brca1-delta11b (Brca1) mRNA, complete cds
Length = 2280
Score = 279 bits (714), Expect = 2e-72
Identities = 195/506 (38%), Positives = 263/506 (51%), Gaps = 31/506 (6%)
Frame = +1
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQ---ELKKTLT 1317
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 814 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPPNSYPSIIS 993
Query: 1318 QVSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSH 1374
S ++ + QS S K L + + EY Q + A+ E S S + E
Sbjct: 994 DSSALEDLRNPEQSTSE--KVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGV 1167
Query: 1375 EPFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLC 1423
E S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 1168 ERSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTET 1338
Query: 1424 RELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKH 1482
LP + GT LE + E D SE + +++ + GN+ SS+ ++K
Sbjct: 1339 SYLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKV 1494
Query: 1483 PCPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMS 1542
P + AE+ A A + + + S K +S MS
Sbjct: 1495 PQLKVAESAQGPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMS 1641
Query: 1543 IVASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRK 1602
+V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG K
Sbjct: 1642 MVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGK 1821
Query: 1603 WVVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGP 1662
WVVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GP
Sbjct: 1822 WVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGP 2001
Query: 1663 FTDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVA 1722
FT+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI +
Sbjct: 2002 FTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAP 2181
Query: 1723 VVTREWVLDSVACFECQELDAYLVSQ 1748
VVTREWVLDSVA ++CQELD YL+ Q
Sbjct: 2182 VVTREWVLDSVALYQCQELDTYLIPQ 2259
Score = 182 bits (461), Expect = 4e-43
Identities = 100/210 (47%), Positives = 149/210 (70%), Gaps = 1/210 (0%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 1 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 177
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 178 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 351
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 352 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 528
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELE 209
V IELG+DSSE+ A+ + D+E L+
Sbjct: 529 SVYIELGSDSSEDTVNKATYCSVGDQELLQ 618
Score = 79.0 bits (193), Expect = 4e-12
Identities = 83/288 (28%), Positives = 132/288 (45%), Gaps = 13/288 (4%)
Frame = +1
Query: 1236 STPLQIQKQVTSVVQSSANPSTLPCSECLNENNEQKT---LEAALSNECASPSQESECSV 1292
S P Q TS+ +N T+ QKT +E + + ++ + CSV
Sbjct: 418 SEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYIELGSDSSEDTVNKATYCSV 597
Query: 1293 N-----LFSSQSNMSEESVDGAQEL--KKTLTQVSNVKKSKEAPQSCSGGLKRLKNNLND 1345
+ Q E S+D A++ + + T V+N + + + + KR+ +
Sbjct: 598 GDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHRQPSNNDLNTTEKRVAERHPE 777
Query: 1346 EYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVL 1405
+YQ + ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA L
Sbjct: 778 KYQGEA--------ASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAEL 933
Query: 1406 EAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVL 1465
EAVL+QHGSQ P I + LE +R ++ SE ++ K+S P
Sbjct: 934 EAVLEQHGSQPPNSYP-------SIISDSSALEDLRNPEQSTSEKVLTSQ--KSSEYP-- 1080
Query: 1466 CGNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 1081 ---ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 1197
>ref|NM_007304.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant
BRCA1-delta11b, mRNA
Length = 3796
Score = 279 bits (714), Expect = 2e-72
Identities = 195/506 (38%), Positives = 263/506 (51%), Gaps = 31/506 (6%)
Frame = +1
Query: 1274 EAALSNECASPSQESECSV---------NLFSSQSNMSE-ESV---DGAQ---ELKKTLT 1317
E ++S +C+ S +S+ NL Q M+E E+V G+Q ++
Sbjct: 955 ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPPNSYPSIIS 1134
Query: 1318 QVSNVKKSKEAPQSCSGGLKRLKNNLNDEY---QEDPNMGANLGEASGYDSETSRVEDSH 1374
S ++ + QS S K L + + EY Q + A+ E S S + E
Sbjct: 1135 DSSALEDLRNPEQSTSE--KVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGV 1308
Query: 1375 EPFSQGEILSTQQK-------NAMQNNLKKLQQEMA----VLEAVLKQHGSQDAEVLPLC 1423
E S + S + ++QN Q+E+ V E L++ G D L
Sbjct: 1309 ERSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHD---LTET 1479
Query: 1424 RELPYCSIGGTLGLERMRQETENVSEHD-SETKLTKASVLPVLCGNVTKNPNSSSFSVKH 1482
LP + GT LE + E D SE + +++ + GN+ SS+ ++K
Sbjct: 1480 SYLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARV----GNIP----SSTSALKV 1635
Query: 1483 PCPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGKENAASSGTTCRTEMS 1542
P + AE+ A A + + + S K +S MS
Sbjct: 1636 PQLKVAESAQGPAAAHTTDTAGYNAMEESVS-----------REKPELTASTERVNKRMS 1782
Query: 1543 IVASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRK 1602
+V SGL E ++V KFARK T +N IT+ TTHV+MKTD E VCERTLKYFLGIAG K
Sbjct: 1783 MVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGK 1962
Query: 1603 WVVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQSPAEKIFKDFEICCCGP 1662
WVVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S KIF+ EICC GP
Sbjct: 1963 WVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGP 2142
Query: 1663 FTDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQRKNNVA 1722
FT+M T LEW+V+LCGASVVK+L FT +VVVQPDAW E + AI +
Sbjct: 2143 FTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAP 2322
Query: 1723 VVTREWVLDSVACFECQELDAYLVSQ 1748
VVTREWVLDSVA ++CQELD YL+ Q
Sbjct: 2323 VVTREWVLDSVALYQCQELDTYLIPQ 2400
Score = 182 bits (461), Expect = 4e-43
Identities = 100/210 (47%), Positives = 149/210 (70%), Gaps = 1/210 (0%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 142 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 318
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 319 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 492
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 493 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 669
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELE 209
V IELG+DSSE+ A+ + D+E L+
Sbjct: 670 SVYIELGSDSSEDTVNKATYCSVGDQELLQ 759
Score = 79.0 bits (193), Expect = 4e-12
Identities = 83/288 (28%), Positives = 132/288 (45%), Gaps = 13/288 (4%)
Frame = +1
Query: 1236 STPLQIQKQVTSVVQSSANPSTLPCSECLNENNEQKT---LEAALSNECASPSQESECSV 1292
S P Q TS+ +N T+ QKT +E + + ++ + CSV
Sbjct: 559 SEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYIELGSDSSEDTVNKATYCSV 738
Query: 1293 N-----LFSSQSNMSEESVDGAQEL--KKTLTQVSNVKKSKEAPQSCSGGLKRLKNNLND 1345
+ Q E S+D A++ + + T V+N + + + + KR+ +
Sbjct: 739 GDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHRQPSNNDLNTTEKRVAERHPE 918
Query: 1346 EYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVL 1405
+YQ + ASG +SETS ED SQ +IL+TQQ++ MQ+NL KLQQEMA L
Sbjct: 919 KYQGEA--------ASGCESETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAEL 1074
Query: 1406 EAVLKQHGSQDAEVLPLCRELPYCSIGGTLGLERMRQETENVSEHDSETKLTKASVLPVL 1465
EAVL+QHGSQ P I + LE +R ++ SE ++ K+S P
Sbjct: 1075 EAVLEQHGSQPPNSYP-------SIISDSSALEDLRNPEQSTSEKVLTSQ--KSSEYP-- 1221
Query: 1466 CGNVTKNP---NSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKS 1510
+++NP ++ F V +A+++ S G +S+ C S
Sbjct: 1222 ---ISQNPEGLSADKFEV------SADSSTSKNKEPGVERSSPSKCPS 1338
>gb|U68041.1|HSU68041 Human breast and ovarian cancer susceptibility protein (BRCA1) mRNA,
partial cds
Length = 1536
Score = 271 bits (694), Expect = 4e-70
Identities = 133/222 (59%), Positives = 158/222 (70%)
Frame = +1
Query: 1527 KENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEEL 1586
K +S MS+V SGL E ++V KFARK T +N IT+ TTHV+MKTD E
Sbjct: 16 KPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEF 195
Query: 1587 VCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQS 1646
VCERTLKYFLGIAG KWVVSY W+ QS KE ++L+E FEV+GDV+NGRNHQGPKRAR+S
Sbjct: 196 VCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARES 375
Query: 1647 PAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPDAW 1706
KIF+ EICC GPFT+M T LEW+V+LCGASVVK+L FT +VVVQPDAW
Sbjct: 376 QDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAW 555
Query: 1707 MEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLVSQ 1748
E + AI + VVTREWVLDSVA ++CQELD YL+ Q
Sbjct: 556 TEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 681
>gb|U50709.1|CFU50709 Canis familiaris BRCA1 homolog gene, complete cds
Length = 5637
Score = 269 bits (687), Expect = 2e-69
Identities = 150/286 (52%), Positives = 184/286 (63%), Gaps = 5/286 (1%)
Frame = +1
Query: 1468 NVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSVLHNVAGK 1527
+V+ P S+S ++K P Q E+ S+A + + KS+ SV K
Sbjct: 4774 HVSSMPTSTS-ALKLPQFQVEESAKSTAAVHIASTAGYN--KSEDSVGIE---------K 4917
Query: 1528 ENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEELV 1587
SS +S+VASGL E ++V KFARK + +N I++ TTHVIMKTD E V
Sbjct: 4918 PEVISSTRGVNKRISMVASGLTPKEFMLVHKFARKHHISLTNLISEETTHVIMKTDAEFV 5097
Query: 1588 CERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRA---- 1643
CERTLKYFLGIAG KWVVSY W+ QS KE +ILDE FEV+GDV+NGRNHQGPKRA
Sbjct: 5098 CERTLKYFLGIAGGKWVVSYFWVTQSIKERKILDEHDFEVRGDVVNGRNHQGPKRARESQ 5277
Query: 1644 -RQSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQ 1702
R+S KIF+ EICC GPFT+M T LEW+V LCGASVVK+ LFT + VVVVQ
Sbjct: 5278 DRESQDRKIFRGLEICCYGPFTNMPTDQLEWMVHLCGASVVKEPSLFTLSKGTHPVVVVQ 5457
Query: 1703 PDAWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYLVSQ 1748
PDAW E + + AI + VVTREWVLDSVA ++CQELD YL+ Q
Sbjct: 5458 PDAWTEDSGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 5595
Score = 267 bits (682), Expect = 9e-69
Identities = 227/679 (33%), Positives = 339/679 (49%), Gaps = 17/679 (2%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + +VQNVL+AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ ++KG
Sbjct: 1 MDLSADRVEEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QRKGPS 177
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AFELDTG++F S F K E + E
Sbjct: 178 QCPLCKNDITKRSLQESTRFSQLVEELLKIIHAFELDTGLQFADSYNFSK--KENNSPEH 351
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKG 180
L S+IQS G+RNR + +++ ++ TLE ++ QL++ + S+R+K+Q K
Sbjct: 352 LKEEVSIIQSMGYRNRAKRLRQSEPENPTLETSLSVQLSNLGIV-RSLRTKQQIQPQNKS 528
Query: 181 VLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVIG 240
V IELG+DSSE+ ASS + D +ELE + +S N P K A E G
Sbjct: 529 VYIELGSDSSEDTVNKASSCSVGD-DELEITSQGARAEASLN--PAKKAACEF-----SG 684
Query: 241 E-TDFLKEALDKKSMLNITEHIKCNQVNTIEGQS-SPLNVFDADLLTGQRDGIGNASPLK 298
+ T+ K + +H +G S S L+V T +AS L+
Sbjct: 685 DITNIEHHQSSNKDLTTTEKHATKKHPEKYQGISVSNLHVEPCGTNT-------HASSLQ 843
Query: 299 ND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEMCEP 355
++ +S L M+VE+ + + +++ L S + R + KE D +PS E ++
Sbjct: 844 HENSSLLLTKHRMNVEKAEICNNSKQPGLARSQQSRWAESKETCNDRQIPSTEK-KVVVN 1020
Query: 356 MDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQND 415
D KE +KP P +V LN SI+KVNEWF +
Sbjct: 1021ADLLCGRKELNKQKPPHSDSPR--DSQDVPWITLNSSIRKVNEWFSRSDEILTSDDSHDR 1194
Query: 416 HAEA-TDASGEGDI-SLSDKDSCISEKTNPIVDSVEFAVI-ERNKRWTKQTTYSIEDKIF 472
+E T+ G ++ + + S SEK + + + A I E + TK +IEDKIF
Sbjct: 1195GSELNTEVGGAVEVPNEVGEYSGSSEKIDLMASDPQDAFICESERVHTKPVGGNIEDKIF 1374
Query: 473 GKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDFIK 532
GKTY RK++ + T A + + + L PEDFIK
Sbjct: 1375GKTYR--RKASLPKVSHTTEVLTIGACAIEPQTMQTHPFMNKAEHKRRTTSSLHPEDFIK 1548
Query: 533 KKDLEEADRCPQGIKSSLGDAEKE--------KCDENSAVKENPLLEKRKGSTLAEFKER 584
K +L + P+ + + +++ EN E ++K K + E E+
Sbjct: 1549KVELGIVPKTPEKLIEGINQIKRDGHVINITNNGPENET--EGDYVQKEKNANPTESLEK 1722
Query: 585 GLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIH-LVDRNPGS 643
++ E +S + S+ +LELN+S K+ K K S R CA+ +V+RN
Sbjct: 1723ESAFRTKTEPMSSRISNMELELNSSSSKAPKKNRLRRKS---SARHTCALEFVVNRNLNP 1893
Query: 644 FDLAEPLINSYPSNEEPSK 662
D +E I S S+EE K
Sbjct: 1894PDHSELQIESCSSSEEMKK 1950
Score = 155 bits (392), Expect = 4e-35
Identities = 185/681 (27%), Positives = 298/681 (43%), Gaps = 51/681 (7%)
Frame = +1
Query: 829 GCC--SRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSL--YPT 884
GC +RN + F + + + E ++E E+SELD Q LRN+F+ SKRQSF+L YP
Sbjct: 2443 GCSKDTRNDTEGFVVPLTCKDNHTQETSIEMEESELDTQCLRNMFKVSKRQSFALFSYPR 2622
Query: 885 -PMKACTTDDVAS-------EKLNTSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEK 936
P + C T S K+ C + E + K + ++Q T A S+V +K
Sbjct: 2623 DPEEDCVTVCPRSGAFGKQGPKVTLECGQKEESQGKKESEIRHVQAVHTNA-GFSAVSQK 2799
Query: 937 ------FETCESACVSPV---SCFVSSAACVHTVENQDVSKVANHGNLTTLLRICAARNE 987
F C VS + S F + +S+ H + +R C
Sbjct: 2800 AKKPGDFAKCSIKGVSRLCLSSQFKGKETELLIANYHGISQNPYHIPPLSPIRSCVKTLC 2979
Query: 988 DGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETY 1047
N ++ + + +G E ++S S Q+N E A + G ++V+E
Sbjct: 2980 QENLSEEKFEQHSMSPERAVGNERV-----IQSTVSTISQNNIRECASKEVGSSSVNEVV 3144
Query: 1048 FSSE-----------SNQVEKAEVVDDKG-LMQHFQPSPMLCPTACQQNPAEFNCELTEK 1095
S+ S + +AE+ ++G + ++ P C+Q+ + NC+ E
Sbjct: 3145 SSTNEVGSSVNEVGSSGENIQAELGRNRGPKLNAMLRLGLMQPEVCKQSLSLSNCKHPEM 3324
Query: 1096 KIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDLSETPDGLLCSDND 1155
K +G E + +VS S + + E+ + SETPD LL D
Sbjct: 3325 KW--------QGQSEGAVLSVSADFSPCLISDNPEQPMGSSRSSQVCSETPDDLLNGDK- 3477
Query: 1156 TEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGIQRFRRRAQKLQXXXX 1215
+ SF ++ K+ SAVF K + E + S S + Q ++R +KL+
Sbjct: 3478 IKGKVSFAESDIKEKSAVFSKSVQSG---EFSRSP-SPSDHTRLAQGYQRGTKKLESSEE 3645
Query: 1216 XXXXXXX-LPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPCSECLNENNE-QKTL 1273
LP FQ L+FGK + P Q + +N + N ++ +
Sbjct: 3646 NMSSEEEELPCFQHLIFGKVTNMPSQSTSHNAVAAEGLSNKTEENLDSLKNSLSDISNQV 3825
Query: 1274 EAALSNECASPSQESECSVNLFSSQSNMSEE------SVDGAQELKKTLTQVSNVKKSKE 1327
+A +++ S+E+ CS +LFSSQ + E+ + D T QV + ++ +
Sbjct: 3826 PSAKASQEHHLSEEARCSGSLFSSQCSALEDLTVNTNTQDPFSMFDPTSKQVRHQSENLD 4005
Query: 1328 APQSCSGGLKRLKNNLNDEY---------QEDPNMGANLGE-ASGYDSETSRVEDSHEPF 1377
K L ++ +DE QE+ ++ ++LGE ASGY+SETS ED
Sbjct: 4006 VLND-----KELVSDDDDEREPGLEEDSPQEEQSVDSDLGEVASGYESETSLSEDCSRLS 4170
Query: 1378 SQGEILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLGL 1437
SQ +IL+TQQ++ MQ+NL KLQQEMA LEAVL+QH SQ + P CS L
Sbjct: 4171 SQSDILTTQQRDTMQDNLIKLQQEMAELEAVLEQHESQPSNSSP-SLIADSCSPEDLLNP 4347
Query: 1438 ERMRQETENVSEHDSETKLTK 1458
E+ E SE S++ +++
Sbjct: 4348 EQNASERVLTSEKSSDSPISQ 4410
>gb|AF416868.1|AF416868 Xenopus laevis breast and ovarian cancer susceptibility protein
(BRCA1) mRNA, complete cds
Length = 6177
Score = 265 bits (677), Expect = 3e-68
Identities = 143/281 (50%), Positives = 182/281 (63%), Gaps = 3/281 (1%)
Frame = +2
Query: 1468 NVTKNPNSSSFSVKHPCPQTAEATDSSAVAQGDNKSNVQVCKSKRSVCFPTSV---LHNV 1524
N N SF + + EA +S + + NK+ + + S F + + +V
Sbjct: 3980 NKRSTSNQGSFCL------SVEAAESPQIPK-QNKAEFGIARKSTSPTFASPARAKVPSV 4138
Query: 1525 AGKENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDE 1584
K SS R +S VASGLNQ E +VQ+F++ TQS S+ ITD TTHVIMKTD
Sbjct: 4139 GFKSPVVSS----RRNLSFVASGLNQCEMALVQRFSKTTQSILSSRITDSTTHVIMKTDA 4306
Query: 1585 ELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRAR 1644
ELVCERTLKYF GIA RKWVVSY+W++QSF+EG+ILDE FEVKGDVINGRNH+GP+R+R
Sbjct: 4307 ELVCERTLKYFQGIASRKWVVSYEWVVQSFREGQILDEYDFEVKGDVINGRNHRGPRRSR 4486
Query: 1645 QSPAEKIFKDFEICCCGPFTDMTTGHLEWIVELCGASVVKQLHLFTHKVNSTAVVVVQPD 1704
+ DFEIC G FTDMT LEW+V CGA+VVK+L F K N T++V+VQPD
Sbjct: 4487 LGSDGLLLIDFEICFFGSFTDMTLDDLEWMVSECGATVVKKLQFFKKKHNVTSLVIVQPD 4666
Query: 1705 AWMEGTSYEAIQRKNNVAVVTREWVLDSVACFECQELDAYL 1745
A E Y I++K+ VVTREW++DSVA + Q+ DAYL
Sbjct: 4667 ASTEVRDYTEIRKKHKALVVTREWLMDSVATYRLQKFDAYL 4789
Score = 181 bits (459), Expect = 6e-43
Identities = 163/582 (28%), Positives = 244/582 (41%), Gaps = 19/582 (3%)
Frame = +2
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
M S + I + +V+S MQKNLECP+CL+++KEPV+TKCDH+FC+FCM +LLS+KKKG +
Sbjct: 56 MTCSRMDIEGICSVISVMQKNLECPICLELMKEPVATKCDHIFCKFCMLQLLSKKKKGTV 235
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
CPLCKTEVT+RSL+E+ RFK L+EG L+ I AFE D+G KF S+ K L
Sbjct: 236 PCPLCKTEVTRRSLQESHRFKLLVEGQLKIIKAFEFDSGYKFFPSQEHTKGLDSTIEDVL 415
Query: 121 LGNNSSVIQSKGFRNRKRGA---KENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGI 177
+ + S++ KG+RNRK+G K + + + Q + R KK K
Sbjct: 416 VKEDQSIVHCKGYRNRKKGVFNRKTYEETGMLSVSKAEEQFAKEVTRLIPCRQKKPK--K 589
Query: 178 EKGVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPN 237
E ++ S + +L GL + P EK + ++ E ++ +
Sbjct: 590 EAALIFSNCVPDSSDGDLLNKENGLRND---CSPLHYEK-------EDTQIPEMEEMVES 739
Query: 238 VIGETDFLKEALDKKSMLNITEHIKCNQVNTIEGQSSPLNVFDADLLTGQRDGIGNASPL 297
+ E +F + A + + G P + + T + GN
Sbjct: 740 DLAECEFAESA-----------------GSNLLGFDGPEGIPEISAET-SINAAGNC--- 856
Query: 298 KNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDIC--VPSVEDVEMCEP 355
F E + CS K D E + K C VP P
Sbjct: 857 ----DFYGRKTEQFPNDHHCSFKQNIADAEQN--------KRNQHCGNVPFA-------P 979
Query: 356 MDDSLLEKEPPVEKPLQPKIPHCPTLNE----VSTKGLNQSIQKVNEWFXXXXXXXXXXX 411
M S L+++ VE + N TK + +S ++VNEW
Sbjct: 980 MGKSNLDEKETVETDFDNQHNDSNPENNDPLGKVTKLMRRSTERVNEWLLKTNQDFSTLS 1159
Query: 412 XQNDHAEATDASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIEDKI 471
+ D DA + SDK SC S+ + + + A + + ++DKI
Sbjct: 1160AEED--PILDALALQNKETSDKRSCSSDDSELMPVLHKHAEKGISGGGFDKPAVGVKDKI 1333
Query: 472 FGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLN-----NSXXXXXXXXXXSACILQ 526
F K Y+R RK+ P + + A D+A E G N + L
Sbjct: 1334FCKVYKRERKAMPPNNITCV--AEVHHDSALETGKENMTLEYGTGMSHLMSKRKMVYSLN 1507
Query: 527 PEDFIKKKDLEEADRCPQGIKSSLGDA-----EKEKCDENSA 563
PE+ KK DL + + DA +K + D NSA
Sbjct: 1508PENTSKKNDLANINGSINVFPDCISDANLELEDKSEADSNSA 1633
Score = 114 bits (284), Expect = 1e-22
Identities = 104/310 (33%), Positives = 149/310 (47%), Gaps = 7/310 (2%)
Frame = +2
Query: 1121 SEFSVREALEESLKGHSDF-TDL-SETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRS 1178
S+ SV + ++DF +D+ S TPDGLL + E ++S + T R +A+
Sbjct: 2747 SQSSVADKSTAHSNVNTDFISDINSATPDGLLHYMDKAEGNSSPWDTTRDKNAAL----- 2911
Query: 1179 GAAWVKEVNDSVVSCKPRSEGIQRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTP 1238
+ SC P + G + K+Q S Q L K P
Sbjct: 2912 -----------LESCLPSAYGSTGEKTPIPKVQSSEEG--------SSQGLFNQK----P 3022
Query: 1239 LQIQKQVTSVVQSSANPSTLPC---SECLNENNEQKTLEAALSNECASPS--QESECSVN 1293
SS NP C S+ +N K + ++ A PS QES+CSV+
Sbjct: 3023 KCSSSGKADQKNSSKNPGKSQCRILSDFSGSSNNGKCSSQEMLSKAAFPSLSQESQCSVS 3202
Query: 1294 LFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNNLNDEYQEDPNM 1353
LFS+QSNMS++SVD ++ K+ + Q V +K + SG + + L D+YQ
Sbjct: 3203 LFSTQSNMSQQSVD--EDHKQDVLQDELVSPNKTKRTAISGTEETQISPLRDQYQNP--- 3367
Query: 1354 GANLGEASGYDSETSRVEDSHEPFSQGEILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHG 1413
++ EAS +SE S DS SQ E+L+TQQ+N M+++LKKLQQEMA LEAVL QHG
Sbjct: 3368 --DIDEASECESEASHTGDSSILSSQDELLNTQQRNYMKDSLKKLQQEMAALEAVLGQHG 3541
Query: 1414 SQDAEVLPLC 1423
+Q E C
Sbjct: 3542 TQKLEAETTC 3571
>gb|BC012577.1|BC012577 Homo sapiens, clone IMAGE:3996658, mRNA
Length = 2101
Score = 245 bits (625), Expect = 4e-62
Identities = 226/682 (33%), Positives = 342/682 (50%), Gaps = 20/682 (2%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVI 60
MDLS + + +VQNV++AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG
Sbjct: 124 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPS 300
Query: 61 QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAEL 120
QCPLCK ++TKRSL+E++RF QL+E LL+ I AF+LDTG+++ +S F K E + E
Sbjct: 301 QCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAK--KENNSPEH 474
Query: 121 LGNNSSVIQSKGFRNRKRGAKENRQDSCTL-EANVDPQLTDNRVKGSSVRSKKQKCGIEK 179
L + S+IQS G+RNR + ++ ++ +L E ++ QL+ N ++R+K++ +
Sbjct: 475 LKDEVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLS-NLGTVRTLRTKQRIQPQKT 651
Query: 180 GVLIELGTDSSEEHFILASSTGLEDKEELEEPKSAEKYGSSCNTQPLKLGAKEIILPNVI 239
V IELG+DSSE+ A+ + D+E L+ + + K A E
Sbjct: 652 SVYIELGSDSSEDTVNKATYCSVGDQELLQITPQGTR--DEISLDSAKKAACE------F 807
Query: 240 GETDFLKEALDKKSM--LNITEHIKCNQ-VNTIEGQS-SPLNVFDADLLTGQRDGIGNAS 295
ETD + S LN TE + +G S S L+V T +AS
Sbjct: 808 SETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNT-------HAS 966
Query: 296 PLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEM 352
L+++ +S L + M+VE+ + +K+++ L S R KE D PS E +
Sbjct: 967 SLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE--KK 1140
Query: 353 CEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
+ D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 1141VDLNADPLCERKEWNKRKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDS 1317
Query: 413 QNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIED 469
+ +E+ + L++ D S SEK + + A+I +++R +K +IED
Sbjct: 1318HDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIED 1497
Query: 470 KIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY ++ N S + + I+ A E +E L N L P
Sbjct: 1498KIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG----LHP 1665
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLAEF 581
EDFIKK DL + P+ I E+ + + ++ EN ++ K E
Sbjct: 1666EDFIKKADL-AVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIES 1842
Query: 582 KERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRN 640
E+ +K AE +S S+ +LELN + K+ K K STR A+ L V RN
Sbjct: 1843LEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVSRN 2013
Query: 641 PGSFDLAEPLINSYPSNEEPSK 662
+ E I+S S+EE K
Sbjct: 2014LSPPNCTELQIDSCSSSEEIKK 2079
>gb|AF284031.1|AF284031 Vombatus ursinus BRCA1 gene, partial cds
Length = 2592
Score = 211 bits (536), Expect = 7e-52
Identities = 241/907 (26%), Positives = 368/907 (40%), Gaps = 53/907 (5%)
Frame = +2
Query: 294 ASPLKNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVED--VE 351
+S L +S L N + M+VE+ + HKN++ L + E LD+ KE IC P E
Sbjct: 5 SSLLPKTSSLLPNTDRMNVEKAELCHKNKQPALGRNQESSLDESKE--ICSPGKTPGACE 178
Query: 352 MCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXX----XXXX 407
E D L E++ EKP P+ P N +S L SIQKVNEW
Sbjct: 179 RHELNDHHLCERQGLEEKPQHPESPRGNPQNCLSGTKLKSSIQKVNEWLSRSSDILASDN 358
Query: 408 XXXXXQNDHAEATDASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKR-WTKQTTYS 466
AE A +G ++ +S +SEKT+P+ DS + A + KR + +
Sbjct: 359 SNGRSHEQSAEVPSALEDGHPDTAEGNSSVSEKTDPVADSTDDAWLHVPKRSCLRPAENN 538
Query: 467 IEDKIFGKTYER-GRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACIL 525
IEDKIFGKTY R N + + ++ D+ L S L
Sbjct: 539 IEDKIFGKTYRRKSGHPNLNYVTENLFAEAVAPDSLIP---LEAPKNTRLKRKGRSIADL 709
Query: 526 QPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVKENPLLE-KRKGSTLAEFK-- 582
QPEDFI+K D+ + P+ S+ K + + N L E K G + E K
Sbjct: 710 QPEDFIRKTDVPVIHKTPEKKNHSVDQILKREQSDQVMNTANSLPEQKALGGHVGEVKDV 889
Query: 583 --------ERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAI 634
E+ ++ E V+G + G+LELN+ + K T+ K S R A+
Sbjct: 890 QVLELFSAEKESTFRTGTEPVAGSTNHGELELNSRNAKMTRKDRLRKK---PSARIVRAL 1060
Query: 635 HL-VDRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVI 693
L VDRNP S + +E I+SYPS+EE K + E +
Sbjct: 1061 ELVVDRNPSSSNESELQIDSYPSSEEIRKG----TNSEQKQIRRSRRLRLLSEEIVVGAK 1228
Query: 694 KEAKNSDSGPEGSVFGVERNVLVHN-----SQCKDLRKQQDILSYMSLADRNGADLEANG 748
K K D E + V + + N + + Q + S +R+ LEA
Sbjct: 1229 KAHKPDDQAEESCISEVFPELKIGNVPACATDSLTTDRDQVLASCSFTEERDERSLEA-- 1402
Query: 749 IQISSKNSDDMAKN--RSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQS----PS 802
I S D+ N L P + +Q+ L PQ+ PS
Sbjct: 1403 --IPSSKDQDLPLNGGEGLQGERAPGSLEALEVPDTDWDTQDSTSLFPADTPQNSKAGPS 1576
Query: 803 KTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPM---AKNASEFTMEAED 859
H+ + T ++ GC S+N D +S M KNAS+ T E ED
Sbjct: 1577 PHRSHSEIMETPKELL---------DGCSSKNTESDEEDLRSLMRQEVKNASKTTTEMED 1729
Query: 860 SELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCPDQVEERNSKYLKTEN 919
SELD QYL+N F+ SKRQSF+L +P + C +N PD + + + +
Sbjct: 1730 SELDTQYLQNTFKRSKRQSFALRSSPRQECRKPSAVPGTVNQQSPDNTTDCGGQEKEKQG 1909
Query: 920 LQEE------KTTAENLSSVCE----------KFETCESACVSPVSCFVSSAACVHTV-E 962
+E K+ +L++ C+ K T E + + ++ C H
Sbjct: 1910 NRESNKPVWPKSAVMSLAAACQTEERKPGVYAKCSTTEVSRLCHIAPLHGVIDCEHIAGN 2089
Query: 963 NQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTL-STGIGVESKLRLSPVRSN 1021
NQ +S+V + + R A++ + + + T T +G ES +S+
Sbjct: 2090 NQGISQVPDQKPSVSPARSSASKTINTKNLLEERLDEQTTCPETAMGNESL-----AQSS 2254
Query: 1022 RSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPS-PMLCPTA 1080
S QSN+ E+ + T LN S E +Q +K E +K + QP ++ P
Sbjct: 2255 LSPVSQSNSREYISKATDLNRFISIGSSGEGSQAQKGE---NKESELNTQPKLKLVQPQI 2425
Query: 1081 CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT 1140
CQQ+ + NC+ +++K KG ++ Q +ST S LE++ +
Sbjct: 2426 CQQSFPQDNCKESKRK--------GKGGNGKLAQAISTDSS-----PCLEQTKESTHSSQ 2566
Query: 1141 DLSETPD 1147
SETPD
Sbjct: 2567 VCSETPD 2587
>gb|AF019081.1| Cynocephalus variegatus breast and ovarian susceptibility (BRCA1)
gene, partial cds
Length = 3441
Score = 193 bits (491), Expect = 1e-46
Identities = 276/1128 (24%), Positives = 462/1128 (40%), Gaps = 75/1128 (6%)
Frame = +3
Query: 252 KSMLNITEHIKCNQ-VNTIEGQSS---PLNVFDADLLTGQRDGIG---NASPLKND-TSF 303
+ + NI H C++ +NTIE ++ P + + + G +AS L+++ +S
Sbjct: 18 EDITNIEHHQSCDKDLNTIEKHATERHPEKYQSSSVSNLHVEPCGTNTHASSLQHENSSL 197
Query: 304 LKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEMCEPMDDSLL 361
L+ + ++VE+T+ +K+++ L S E R + KE D PS E ++ D
Sbjct: 198 LRTKDRINVEKTEFCNKSKQPGLARSQESRWAESKETCNDRQTPSTEK-KIDLNADSQHG 374
Query: 362 EKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQNDHAEATD 421
KE ++KP P+ P +V LN SIQKVNEWF + D ++
Sbjct: 375 RKERNMQKPPYPESPR--DTQDVPWITLNSSIQKVNEWFSRSDEILASDDSR-DRVSESN 545
Query: 422 ASGEGDISLS---DKDSCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIEDKIFGKTYE 477
A G + + D S SEK + + A+I +++R ++ +I+DKIFGKTY+
Sbjct: 546 AKVAGALEVPNDVDGYSDSSEKVDLMASDPHDALICKSERIHSRPVESNIKDKIFGKTYQ 725
Query: 478 RGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDFIKKKD 535
R N S + D I+ A E +E L N L PEDFIKK D
Sbjct: 726 RKTSLPNLSHVNEDLIIGAFVTEPQITQERPLTNKVKPKRRTTSG----LHPEDFIKKAD 893
Query: 536 LEEADRCPQGIKSSLGDAEKEKCDEN--SAVKENPL----LEKRKGSTLAEFKERGLQWK 589
L + P+ I + E+ N ++ EN ++K K + E E+ ++
Sbjct: 894 LAVVQKTPEKINQGIDQMEQNDRVMNIINSGHENETKDDYVQKEKNANPTESLEKESAFR 1073
Query: 590 NAAEKVSGKCSDGQLELNNSDQK-STKNACSTAKGCRHSTRTRCAIHLVDRNPGSFDLAE 648
AE +S S+ ++ELN + K S KN RH +V+RNP + E
Sbjct: 1074 TKAEPISSSISNMEIELNIHNSKPSKKNRLRKMSSTRHIHALEL---VVNRNPSPPNYTE 1244
Query: 649 PLINSYPSNEEPSKADCXXXXXXXXXXXXXX-----XXXITKETGKMRVIKEAKNSDSGP 703
I+S S+EE K + K I +S++ P
Sbjct: 1245 LQIDSCSSSEEIEKKNSSQMPVRHSRKLQLMENKEPATGAKKSNKPNEQISRRHSSNAFP 1424
Query: 704 EGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDDMAKN- 762
E + NV V + C K Q+ + + +LE + S+K+ D+ +
Sbjct: 1425 ELRL----TNVPVFFANCSSSNKLQEFIDPSLQREEIEENLETIHVSNSAKDPKDLVLSG 1592
Query: 763 -------RSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEE 815
RS + + S E +LGK +PS+ A+I +
Sbjct: 1593 EKGLQTERSVESTSISLVPDTDYGTQDSISILEANILGKA--KTAPSQHANQCAAIENPK 1766
Query: 816 KRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYLRNIFRSSK 875
+ C KG +RN +DF+ + + ++E ++SELD QYL+NIF+ SK
Sbjct: 1767 ELIHGCP-----KG--TRNDTEDFKDPLRCGVDHIQKTSIEMQESELDTQYLQNIFKVSK 1925
Query: 876 RQSFSLYP---TPMKACTTDDV-------ASEKLNTSCPDQVEERNSKYLKTENLQEEKT 925
RQSF+L+ P K C T S K+ C + E +K K +++Q T
Sbjct: 1926 RQSFALFSNPGNPEKECATVYAHSRLLRKQSPKVTPECEQKEENEGNKESKIKHIQAVNT 2105
Query: 926 TAENLSSVCE---------KFETCESACVSPVSCFVSSAACVHTVENQDVSKVANHGNLT 976
T S +C+ KF + S F + + T + + + H +
Sbjct: 2106 TV-GFSVLCQNVKKPGDYAKFSIKGVSRHCSSSQFRGNETELITANKHGILQNSCHMSSL 2282
Query: 977 TLLR----------ICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSD 1026
+ +R + R E+ + + +++ + + + S+ + S + S
Sbjct: 2283 SPIRSSVKIKCKKNLSEERFEEHSVSPERAMANKRIIQSTVNTISQNNIRDSASKEASSS 2462
Query: 1027 QSNTEEHAFQRTGLNAVSETYFSSESNQVE-------KAEVVDDKGLMQHFQPSPMLCPT 1079
N + G ++++E S E+ Q E K + GLMQ P
Sbjct: 2463 SINEVGSSTNEVG-SSINEVGPSGENIQAELGRNRGPKLSAMLRLGLMQ---------PE 2612
Query: 1080 ACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDF 1139
+QN NC+ E I +E + E ++Q V+T LS + LE+ ++
Sbjct: 2613 VYKQNLPLGNCKHPE---IRQEEN------EGIVQAVNTNLSLCLISHNLEQPMESSHAS 2765
Query: 1140 TDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEG 1199
SETPD LL D + +E+ SF ++ K+ SAVF K + + S + ++G
Sbjct: 2766 QVCSETPDDLLDGD-EIKENTSFAESDSKERSAVFSKSVQRGELSR-SPSPFAQTCLAQG 2939
Query: 1200 IQRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTPLQIQKQ---VTSVVQSSANPS 1256
QR R+ + + LP FQ L+FGK + P Q + T + +
Sbjct: 2940 HQRGARKLESSE--ENVSSEDEELPCFQHLLFGKVTNIPSQSTRHSAVATEYLPKKTEDN 3113
Query: 1257 TLPCSECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEE 1304
+ LN+ + Q L A ++E++CS +LFSSQ + E+
Sbjct: 3114 LVSLKNSLNDCSNQVILAEASQEH--HLNEEAKCSCSLFSSQYSAVED 3251
>gb|AF019079.1|AF019079 Alouatta seniculus breast and ovarian susceptibility (BRCA1) gene,
partial cds
Length = 3441
Score = 180 bits (457), Expect = 1e-42
Identities = 288/1157 (24%), Positives = 466/1157 (39%), Gaps = 92/1157 (7%)
Frame = +3
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVE- 348
+AS L+++ +S L + ++VE+ + +K+++ L S R + +E D PS E
Sbjct: 165 HASSLQHENSSLLLTKDTLNVEKAEFCNKSKQPGLARSQHNRWAESEETCNDRQTPSTEK 344
Query: 349 --DVEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXX 406
DV+ +P+ KE +KP + P T +V+ LN SIQKVNEWF
Sbjct: 345 KVDVD-ADPLHG---RKEWNKQKPPCSENPRDDT-EDVAWIMLNSSIQKVNEWFSRSDEL 509
Query: 407 XXXXXXQNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQT 463
+ +E+ E L++ D S SEK + + +I +++R K
Sbjct: 510 LTSDDSHDGGSESNAKVAEALEVLNEVDGYSSSSEKIDLLASDPHDHLICKSERVHCKSV 689
Query: 464 TYSIEDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXS 521
SIEDKIFGKTY R N S + + I+ A E +E L N
Sbjct: 690 ESSIEDKIFGKTYRRKASLPNLSHVTENLIIGAFVTEPQIIQEHPLTNKLKRKRRVTSG- 866
Query: 522 ACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTL--- 578
L PEDFIKK DL + P+ K + G + E+ D+ + + K KG ++
Sbjct: 867 ---LHPEDFIKKADL-AVQKTPE--KINQGTNQTERNDQVMNITNSGHENKTKGDSIQNE 1028
Query: 579 -----AEFKERGLQWKNAAEKVSGKCSDGQLELN-NSDQKSTKNACSTAKGCRHSTRTRC 632
E E+ +K+ AE +S S+ +LELN ++ + S KN RH
Sbjct: 1029 NNPNPVESLEKE-SFKSKAEPISSSISNMELELNVHNSKASKKNRLRRKSSTRHIHELEL 1205
Query: 633 AIHLVDRNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKET 687
+V RN + E I+S S+EE K + K +
Sbjct: 1206 ---VVSRNLSPPNYTEVQIDSCSSSEEIKKKNYNQMPVRHSRKLQLMEDKERAARAKKSS 1376
Query: 688 GKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEAN 747
+ SD+ PE + N+ + C + + ++ ++ ++ LE
Sbjct: 1377 KPNEQTSKRHASDTFPELRL----TNIPGSFTNCSNTNEFKEFVNPSLPREQTEEKLETV 1544
Query: 748 GIQISSKNSDD-MAKNRSFFNPTFSCQLSN-FNSPSSKAGSQEG------EMLGKLFLPQ 799
+ ++K+ D M S S + S+ P + G+QE LGK
Sbjct: 1545 KLSNNAKDPKDLMLSGESVLQIERSVESSSILLIPGTDYGTQESISLLEVSTLGK--AKT 1718
Query: 800 SPSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAED 859
P+K V A+ ++ C S+D +RN + + P + E +++ +
Sbjct: 1719 EPNKCVSQCAAFENPKELIHGC---SKD----TRNGTEGLKYPLGPEVNYSQETSIDMRE 1877
Query: 860 SELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLNTSCP------DQVEER 910
SELD QYL+N F+ SKRQSF+L+ P K C T S L P +Q EE
Sbjct: 1878 SELDTQYLQNTFKVSKRQSFALFSNPGNPEKECATFSACSRSLKKQSPKVTPECEQKEEN 2057
Query: 911 NSKYLKTENLQEEKTTAENLSSVCEKFETCESA-CVSPVS--CFVSSAACVHT---VENQ 964
+ L E T VC+K + + A C+ S C S T + N+
Sbjct: 2058 QGEKESNIELVETVNTTAGFPMVCQKDKPVDYARCIEGGSRLCLSSQFRGNETGLIIPNK 2237
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ N +++ L+ + + E E ++S + +K + S S
Sbjct: 2238 H-GLLQNPYHMSPLIPTRSFVKTKCKKNLLEENSEEHSMSPERAMGNKNIIPSTVSTISH 2414
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFS------------SESNQVEKAEVVDDKGLMQHFQP 1072
N E+AF+ T +++ E S S N+V ++ L ++ +P
Sbjct: 2415 ----NNRENAFKETSSSSIYEVGSSTNEAGSSTNEVGSSINEVGSSDENIQAELGRNRRP 2582
Query: 1073 S-------PMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSV 1125
+L P C+Q+ +C+ E K K E V+QTV+T +S +
Sbjct: 2583 KLNAMLRLGLLQPEICKQSLPISDCKHPEIK---------KQEHEEVVQTVNTDVSLCLI 2735
Query: 1126 REALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKE 1185
LE+ + SETPD LL D + +E SF K+TS VF K
Sbjct: 2736 SYNLEQHMGSSHTSQVCSETPDNLL-DDGEIKEDTSFAEYGIKETSTVF--------SKS 2888
Query: 1186 VNDSVVSCKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQ 1240
V +S P + Q ++R A+KL+ LP FQ L+FGK +TP Q
Sbjct: 2889 VQRGELSRSPSPFTHTHLAQVYQRGAKKLESSEENLSSEEEELPCFQHLLFGKVSNTP-Q 3065
Query: 1241 IQKQVTSVVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQE 1287
+ TS +ECL++N E+ L S ++C++ S+E
Sbjct: 3066 STRHSTS------------AAECLSKNTEENLLSLKSSLSDCSNQVILAKASQEHYLSEE 3209
Query: 1288 SECSVNLFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKN------ 1341
++CS +LFSSQ + E+ L S + + Q K L +
Sbjct: 3210 TKCSGSLFSSQCSELEDLTTNTNTQDPFLIDSSKRMRRQSESQGVGLSDKELVSDDEERG 3389
Query: 1342 -NLNDEYQEDPNMGANL 1357
+L ++ QE+ +M +NL
Sbjct: 3390 TDLEEDNQEEQSMDSNL 3440
>gb|AF019078.1|AF019078 Macaca mulatta breast and ovarian cancer susceptibility (BRCA1) gene,
partial cds
Length = 3423
Score = 180 bits (456), Expect = 1e-42
Identities = 282/1153 (24%), Positives = 465/1153 (39%), Gaps = 88/1153 (7%)
Frame = +3
Query: 293 NASPLKNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDV 350
+AS L+++ S L + M+VE+ + +K+++ L S R KE D PS E
Sbjct: 165 HASSLQHENSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWTGSKETCNDRQTPSTEKK 344
Query: 351 EMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXX 410
++ + L + K P + +V LN SIQKVNEWF
Sbjct: 345 V---DLNANALYERKEWNKQKLPCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLSSD 515
Query: 411 XXQNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKRWTKQTTYS-I 467
+ +E+ + L++ D S SEK + + +I +++R + S I
Sbjct: 516 DSHDGGSESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEPLICKSERVHSSSVESNI 695
Query: 468 EDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACIL 525
+DKIFGKTY R N S + + I+ A E +E L N L
Sbjct: 696 KDKIFGKTYRRKANLPNLSHVTENLIIGALVTESQIMQERPLTNKLKRKRRTTSG----L 863
Query: 526 QPEDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTLA 579
PEDFIKK DL + P+ I E+ + + ++ EN ++ K
Sbjct: 864 HPEDFIKKADLA-VQKTPEIINQGTNQMEQNGQVMNITNSAHENKTKGDSIQNEKNPNPI 1040
Query: 580 EFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLV-D 638
E E +K AE +S ++ +LELN + K+ K K STR A+ LV
Sbjct: 1041 ESLEEESAFKTKAEPISSSINNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVVS 1211
Query: 639 RNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMRVI 693
RN + E I+S S+EE K + K
Sbjct: 1212 RNLSPPNCTELQIDSCSSSEEIKKKNYNQMPVRHSRNLQLMEDKESATGAKKSNKPNEQT 1391
Query: 694 KEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISS 753
+ SD+ PE + V + + C + +++ + +S ++ LE + ++
Sbjct: 1392 SKRHASDTFPELKLTKVPGSF----TNCSNTSEKEFVNPSLSREEKE-EKLETVKVSNNA 1556
Query: 754 KNSDDMA-KNRSFFNPTFSCQLSNFNS-PSSKAGSQEGEMLGKLFLPQSPSKTVLHAASI 811
K+ D+ S + S+ + P + G+QE L ++ + L A
Sbjct: 1557 KDPKDLILSGERVLQTERSVESSSISLVPGTDYGTQESISLLEV--------STLGKAK- 1709
Query: 812 LTEEKRSWS-CTVFSQDK----GCC--SRNVPKDFRIGKSPMAKNASEFTMEAEDSELDM 864
TE + S C F K GC +RN + F+ ++ E ++E E+SELD
Sbjct: 1710 -TERNKCMSQCAAFENPKELIHGCSEDTRNDTEGFKYPLGSEVNHSQETSIEIEESELDT 1886
Query: 865 QYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLNTSCP------DQVEERNSKYL 915
QYL+N F+ SKRQSF+L+ P + C T S L P +Q EE K
Sbjct: 1887 QYLQNTFKVSKRQSFALFSNPGNPEEECATFSAHSRSLKKQSPKVTSECEQKEENQGK-- 2060
Query: 916 KTENLQEEKTT--AENLSSVCEKFETCESA----------CVSPVSCFVSSAACVHTVEN 963
K N++ +T S VC+K + ++A C+S S F + + T
Sbjct: 2061 KQSNIKPVQTVNITAGFSVVCQKDKPVDNAKCSIKGGSRFCLS--SQFRGNETGLITPNK 2234
Query: 964 QDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRS 1023
+ + N ++ L + + N+ E E ++S V +K + + S S
Sbjct: 2235 HGL--LQNPYHIPPLFPVKSFVKTKCNKNLLEENSEEHSVSPERAVGNK---NIIPSTVS 2399
Query: 1024 QSDQSNTEEHAFQRTGLNAVSETYFS-----SESNQVEKAEVVDDKGLMQHFQPS----- 1073
+N E+AF+ + ++E S S N+V ++ L ++ P
Sbjct: 2400 TISHNNIRENAFKEASSSNINEVGSSTNEVGSSINEVGSSDENIQAELGRNRGPKLNAVL 2579
Query: 1074 --PMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEE 1131
+L P C+Q+ NC+ E K K E ++QTV+T S + + LE+
Sbjct: 2580 RLGLLQPEVCKQSLPISNCKHPEIK---------KQEHEELVQTVNTDFSPCLISDNLEQ 2732
Query: 1132 SLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVV 1191
+ SETPD LL D + +E SF + K++SAVF K + +
Sbjct: 2733 PMGSSHASEVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSIQRGEL 2885
Query: 1192 SCKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVT 1246
S P + Q +R+ A+KL+ LP FQ L+FGK + P Q + T
Sbjct: 2886 SRSPSPFTHTHLAQGYRKEAKKLESSEENLSSEDEELPCFQHLLFGKVSNIPSQTTRHST 3065
Query: 1247 SVVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVN 1293
+ECL++N E+ L S +C++ S+E++CS +
Sbjct: 3066 ------------VATECLSKNTEENLLSLKNSLTDCSNQVILAKASQEHHLSEETKCSGS 3209
Query: 1294 LFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGL--KRLKNN-------LN 1344
LFSSQ + E+ L + + K+ + +S GL K L ++ L
Sbjct: 3210 LFSSQCSELEDLTANTNTQDPFL--IGSSKRMRHQSESQGVGLSDKELVSDDEERGTGLE 3383
Query: 1345 DEYQEDPNMGANL 1357
++ QE+ ++ +NL
Sbjct: 3384 EDNQEEQSVDSNL 3422
>gb|S82500.1|S82500 Rattus norvegicus Brca1 (Brca1) gene, partial cds
Length = 647
Score = 179 bits (454), Expect = 2e-42
Identities = 96/199 (48%), Positives = 136/199 (68%)
Frame = +3
Query: 8 IGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVIQCPLCKT 67
I +VQNVL AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG QCPLCK
Sbjct: 3 IQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLCKN 179
Query: 68 EVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAELLGNNSSV 127
E+TKRSL+ ++RF QL+E LL+ I AFELDTG++ + F K +++ELL ++S+
Sbjct: 180 EITKRSLQGSARFSQLVEELLKIIDAFELDTGMQCANGFSFSKKKN--SSSELLNEDASI 353
Query: 128 IQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKGVLIELGT 187
IQS G+RNR + ++ S TL+ ++ QL++ + S++ +Q K V I L +
Sbjct: 354 IQSVGYRNRVKKLQQIESGSATLKDSLSVQLSNLGIV-RSMKKNRQTQPQNKSVYIALES 530
Query: 188 DSSEEHFILASSTGLEDKE 206
DSSEE + + D+E
Sbjct: 531 DSSEERVNMPDGCSVRDQE 587
>gb|U60523.1|RNU60523 Rattus norvegicus Brca1 mRNA, partial cds
Length = 647
Score = 179 bits (454), Expect = 2e-42
Identities = 96/199 (48%), Positives = 136/199 (68%)
Frame = +3
Query: 8 IGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHVFCRFCMFKLLSRKKKGVIQCPLCKT 67
I +VQNVL AMQK LECP+CL++IKEPVSTKCDH+FC+FCM KLL+ +KKG QCPLCK
Sbjct: 3 IQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLCKN 179
Query: 68 EVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSRYFPKTSTEVATAELLGNNSSV 127
E+TKRSL+ ++RF QL+E LL+ I AFELDTG++ + F K +++ELL ++S+
Sbjct: 180 EITKRSLQGSARFSQLVEELLKIIDAFELDTGMQCANGFSFSKKKN--SSSELLNEDASI 353
Query: 128 IQSKGFRNRKRGAKENRQDSCTLEANVDPQLTDNRVKGSSVRSKKQKCGIEKGVLIELGT 187
IQS G+RNR + ++ S TL+ ++ QL++ + S++ +Q K V I L +
Sbjct: 354 IQSVGYRNRVKKLQQIESGSATLKDSLSVQLSNLGIV-RSMKKNRQTQPQNKSVYIALES 530
Query: 188 DSSEEHFILASSTGLEDKE 206
DSSEE + + D+E
Sbjct: 531 DSSEERVNMPDGCSVRDQE 587
>gb|AF019080.1| Otolemur crassicaudatus breast and ovarian cancer susceptibility
(BRCA1) gene, partial cds
Length = 3426
Score = 177 bits (450), Expect = 7e-42
Identities = 292/1203 (24%), Positives = 484/1203 (39%), Gaps = 94/1203 (7%)
Frame = +3
Query: 249 LDKKSMLNITEHIKCNQ-VNTIEGQSS---PLNVFDADLLTGQRDGIG---NASPLKNDT 301
+ +K + +I H N+ +NTIE +++ P + + + G +AS L++++
Sbjct: 12 VSEKDITSIEHHQSSNKDLNTIEKRATEMHPEKYQGSSVSNLHVEPCGKNTHASSLQHES 191
Query: 302 S-FLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEMCEPMDDSL 360
S L ++M+VE+ + +K+++ L S + R + KE + D C P
Sbjct: 192 SSLLLTKDKMNVEKAEFCNKSKQPGLARSQQSRSAQSKE------TCNDRHTCSPEQKVD 353
Query: 361 LEKEPPVEKPLQPKIPHCPTLN-----EVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQND 415
L PP + Q K + N +V LN SIQKVNEWF ++
Sbjct: 354 LNTAPPYGRKEQNKEKLLCSKNPRDSQDVPWITLNSSIQKVNEWFSRSDEMLTSDDSHDE 533
Query: 416 HAEA-TDASGEGDI-SLSDKDSCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIEDKIF 472
+E+ + +G ++ S D S SEK + + + +I +++R +K +EDKIF
Sbjct: 534 GSESHAEVAGALEVPSEVDGYSSSSEKIDLLASDPHYPIICKSERVHSKPIKSKVEDKIF 713
Query: 473 GKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDF 530
GKTY R N S + + I+ A E +E L N L PEDF
Sbjct: 714 GKTYRRKASLPNLSHVTENLIIRAAATEPQITQECSLTNKLKRKRRTTSG----LCPEDF 881
Query: 531 IKKKDLEEADRCPQGIKSSLGDAEKEKCD--------ENSAVKENPLLEKRKGSTLAEFK 582
IKK DL + P+ ++ EN + EK ST + K
Sbjct: 882 IKKADLAVVQKTPEKRIQGTNQVDQNSHVVNITNSGYENETKGDYVQNEKNANSTESLEK 1061
Query: 583 ERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRNPG 642
E L K AE +S S+ +LELN + K++K K S R +V++NP
Sbjct: 1062 ESSLGTK--AEPISSSISNMKLELNIHNSKASKKKRLRKKSS--SRHIRALELVVNKNPS 1229
Query: 643 SFDLAEPLINSYPSNEE-----PSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAK 697
+ I+S S+EE + K I +
Sbjct: 1230 PPNHTNLQIDSCSSSEEIKDKSSDQIPVRHSRKPGLMEDREPATGAKKSNKPNEQISKRH 1409
Query: 698 NSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSD 757
SD+ PE ++ N+ + C + ++ ++ + +LE IQ+S+
Sbjct: 1410 VSDTFPEVAL----TNISSFFTNCSGSNRLKEFVNPSLQRKKTEENLEET-IQVSNSTKG 1574
Query: 758 DM----------AKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQ----SPSK 803
+ ++ RS + + S P + G+Q+ L K+ + + +P+K
Sbjct: 1575 PVLSGERVLQIESEERSIKSTSISLV------PDTDYGTQDSNSLLKVKVLRKVKTAPNK 1736
Query: 804 TVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELD 863
+ ++ C S+D G N + ++ + + +ME EDSELD
Sbjct: 1737 HASQGTATENPKELIHGC---SKDTG----NDTEGYKDPLRHEINHIQKISMEMEDSELD 1895
Query: 864 MQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCP---------DQVEERNSKY 914
QYL+N F+ SKRQSF+L+ K C T V ++ L+ S +Q+E K
Sbjct: 1896 TQYLQNTFKFSKRQSFALFSNLGKECAT--VCAQSLSASLRKGSKVILECEQIENPGMKE 2069
Query: 915 LKTENLQEEKTTAENLSSVCEKFETCESAC---VSPVSCF-VSSAACVHTVENQDVSKVA 970
K +++Q S VC+K + + + S F +S+ + E+ V+K+
Sbjct: 2070 PKIKHIQGNNINT-GFSVVCQKDKKTDDYAKYSIKEASRFCLSNQFRDNETESITVNKLG 2246
Query: 971 NHGNLTTLLRICAARNEDGNR----------------PQKGEQGSEKTLSTGIGVESKLR 1014
NL + + R D + P+K ST + R
Sbjct: 2247 ILQNLYHIPPLSPIRLFDKTKCNTNLLEERFEEHSVLPEKAVGNENTVPSTMNTINQNNR 2426
Query: 1015 LSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVE-------KAEVVDDKGLM 1067
S + S S N + G ++V+E SSE+ Q E K V GLM
Sbjct: 2427 ESAYKEASSSS--INEVSSSTNEVG-SSVNEVGPSSENIQAELDKNRGPKLNAVLRLGLM 2597
Query: 1068 QHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEER-VIQTVSTGLSEFSVR 1126
Q P +QN NCE + +KG EE V+Q V+ S +
Sbjct: 2598 Q---------PEVYKQNLPISNCEHPK----------IKGQEENGVVQPVNPDFSSCLIS 2720
Query: 1127 EALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEV 1186
+ LE+ + SETPD LL D++ +E+ SF N K+ SAVF K +E+
Sbjct: 2721 DNLEQPTRSSHASQLCSETPDDLLV-DDELKENTSFAENNIKERSAVFSKN---VMRREI 2888
Query: 1187 NDSVVSCKPRSEGIQRFRRRAQKLQXXXXXXXXXXX-LPSFQELMFGKSVSTPLQIQKQ- 1244
+ S S Q +R +KL+ LP FQ L+FGK +T Q +Q
Sbjct: 2889 SRSP-SPLAHIHLTQAHQREVRKLESSEENMSSEDEELPCFQHLLFGKVTNTSSQSTRQS 3065
Query: 1245 --VTSVVQSSANPSTLPCSECLNENNEQKTL-EAALSNECASPSQESECSVNLFSSQSNM 1301
T + + + LN+ + Q TL +A+ N S+E++CSV+LFSSQ +
Sbjct: 3066 TIATECLSRKTEETLVSLQNTLNDCSNQVTLVKASQENHL---SEEAKCSVSLFSSQCSE 3236
Query: 1302 SEESVDGAQE-------LKKTLTQVSNVKKSKEAPQSCSGGLKRLKNNLNDEYQEDPNMG 1354
+ Q+ L K + S ++ + S +R + D +QE+ ++
Sbjct: 3237 DLTANTNTQDPFLMSDPLSKQMRDQSENQEVLSDNELVSNDEEREPSLEEDNHQEEQSVD 3416
Query: 1355 ANL 1357
++L
Sbjct: 3417 SDL 3425
>gb|AF332047.1|AF332047 Pedetes capensis BRCA1 (BRCA1) gene, partial cds
Length = 3190
Score = 174 bits (440), Expect = 1e-40
Identities = 268/1057 (25%), Positives = 436/1057 (40%), Gaps = 45/1057 (4%)
Frame = +2
Query: 293 NASPLKNDTS-FLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L++ +S L + M+VE+ +K+++ L S R + KE D PS +
Sbjct: 53 HASLLQHGSSNLLVTKDRMNVEKADFCNKSKQPGLARSQHNRWAESKETCNDRQTPSTKK 232
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
++ D KE +KP + P +VS LN SIQKVNEWF
Sbjct: 233 -KLDLNADPFYGRKERNKQKPPCSENPR--DTQDVSWVTLNSSIQKVNEWFSRRDEMLTS 403
Query: 410 XXXQNDHAEATDASGEGDISLSDK---DSCISEKTNPIVDSVEFAVIERNKR-WTKQTTY 465
+D ++A G + + D+ S SEK + + A+ +++R K
Sbjct: 404 DDL-HDGVSESNAEVLGALEVPDEIKGHSGSSEKIDLLASDPHNALTCKSERVCAKPVES 580
Query: 466 SIEDKIFGKTYERGRK-SNPSTILRDILP---ATKKEDAAAEEGCLNNSXXXXXXXXXXS 521
+IEDK+FGKTY R N S I +++ ATK + +E L N
Sbjct: 581 NIEDKVFGKTYRRKISLPNLSPITENLIVGAFATKPQ--IRQEHPLTNKLKRKRKATS-- 748
Query: 522 ACILQPEDFIKKKDLEEADRCPQGIK---SSLGDAEKEKCDENSAVK---ENPLLEKRKG 575
L+PEDFIKK DL + P+ I + +G + + N+ ++ +N + K K
Sbjct: 749 --FLRPEDFIKKVDLTVIQKTPEKINQGTAQMGQNGQVINNTNNDLENETKNDYVLKEKN 922
Query: 576 STLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIH 635
+ E E+ + AE +S S+ +LELN + K+ K K STR A+
Sbjct: 923 ANPIESLEKESTHRTKAEPISISISNMELELNTHNSKAPKKNRLRRKS---STRHIHALE 1093
Query: 636 LV-DRNPGSFDLAEPLINSYPSNEEPSKA-----DCXXXXXXXXXXXXXXXXXITKETGK 689
LV ++NP + E I+S S+ E K K
Sbjct: 1094 LVVNKNPSPPNQTELQIDSCSSSNEIKKKCSDQMSVRQSRKLQLMEDAEPAMGAKKNNTP 1273
Query: 690 MRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGI 749
+ I E +D+ PE V N+ + C + K ++ +S + +LE +
Sbjct: 1274 VEKISEKHATDAFPEVKV----TNIPGFLNNCSNSNKPEEFVSPGFQREEIEENLETIQV 1441
Query: 750 QISSKNSDDMAKNRSFFNPTFSCQLSNFNS--PSSKAGSQEG-EMLGKLFLPQSPSKT-- 804
S+K+ ++ + P S S P + +Q+ +L L ++ + +
Sbjct: 1442 SNSTKDPKNLVLSAEKGLPPERSTESTSVSLVPDTDYDTQDSISLLETNTLRKAKTMSNQ 1621
Query: 805 -VLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELD 863
+ +I ++ S SC S+D +RN K F+ + E E E+SELD
Sbjct: 1622 CMTQYVAIEHPKELSHSC---SKD----TRNDTKGFKDALRREVNHIQETNTEMEESELD 1780
Query: 864 MQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLNTSCPDQVEERNSKYLKTENL 920
QYL+N F++SKRQSF+L+P P K C ++ K +T + E++ K E+
Sbjct: 1781 TQYLQNTFQASKRQSFALFPNSRNPEKEC-AHSMSLRKQSTKVTLEYEQKEENQGKEESK 1957
Query: 921 ---QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQDVSKVANHGNLTT 977
+E T VC++ + C A S T ++S V HG L
Sbjct: 1958 IKPAQEVNTTVGFPVVCQEDKPCADANHSITGVSRLCPLSQLTDNETELSTVNKHGVLQN 2137
Query: 978 --LLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKL-RLSPVRSNRSQSDQSNTEEHA 1034
L+ + K EK E+ + S ++S Q+N E+A
Sbjct: 2138 PYLIPSISPVKSFITTKYKKSPSEEKFEKYSASHENAMGNESIIQSIVYTIGQNNIRENA 2317
Query: 1035 FQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTACQQNPAEFNCELTE 1094
F+ +++E S E+ QVE K + Q + P C+Q+
Sbjct: 2318 FKEASSGSINEVGSSGENMQVELGRNRGPK--LNSVQRLGHIQPEVCKQS---------- 2461
Query: 1095 KKIITRERSLVKGNE-ERVIQTVSTGLSEFSVREALEESLKGHSDFTDLSETPDGLLCSD 1153
+ ++ + K E E V+Q V S +LE+ ++ SETPD LL D
Sbjct: 2462 LPVSSKHPEMKKQQENEGVVQAVDADFSPCLTSNSLEQPMRSGCVSQICSETPDDLL-DD 2638
Query: 1154 NDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRS--EGIQRFRRRAQKLQ 1211
+ +E+ SF K+TSAVF K + +S S P + Q +RRA+KL+
Sbjct: 2639 KEVKENTSFTEGGIKETSAVFSKSI------QRGESSRSPSPLTHISLAQCHQRRARKLE 2800
Query: 1212 XX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQK---QVTSVVQSSANPSTLPCSECLNEN 1267
LP FQ L+FGK +TP Q + T + + + LN+
Sbjct: 2801 SSEESISSEDEDLPCFQHLLFGKVTNTPSQSTRGNAVTTEYLSKKTKENLVSLKTDLNDC 2980
Query: 1268 NEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEE 1304
N L A +++ S+E++ S +LFSSQ ++ E+
Sbjct: 2981 NNDLIL--AKTSQEPHLSEEAKYSGSLFSSQCSVLED 3085
>gb|AF019076.1|AF019076 Gorilla gorilla breast and ovarian cancer susceptibility (BRCA1)
gene, partial cds
Length = 3426
Score = 173 bits (439), Expect = 1e-40
Identities = 285/1156 (24%), Positives = 456/1156 (38%), Gaps = 91/1156 (7%)
Frame = +3
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +KN++ L S R KE D PS E
Sbjct: 165 HASSLQHENSSLLLTKDRMNVEKAEFCNKNKQPGLARSQHNRWAGSKETCNDRRTPSTE- 341
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ + D L E+ ++ L P + +V LN SIQKVNEWF
Sbjct: 342 -KKVDLNADPLCERNEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGS 515
Query: 410 XXXQNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYS 466
+ +E+ + L++ D S SEK + + A+I +++R +K +
Sbjct: 516 DDSHDGGSESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESN 695
Query: 467 IEDKIFGKTYERGRKSNPS---TILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSAC 523
IEDKIFGKTY R + S PS I+ A E +E L N
Sbjct: 696 IEDKIFGKTYRR-KASLPSLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRATSG--- 863
Query: 524 ILQPEDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGST 577
L PEDFIKK DL + P+ I E+ + + ++ EN ++ K
Sbjct: 864 -LHPEDFIKKADL-AVQKTPEMINQGTNQMEQNGQVMNITNSGHENKTKGDSIQNEKNPN 1037
Query: 578 LAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL- 636
E E+ +K AE +S S+ +LELN + K+ K K STR A+ L
Sbjct: 1038 PIESLEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELV 1208
Query: 637 VDRNPGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMR 691
V RN + E I+S S+EE K K
Sbjct: 1209 VSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEDKEPATGAKKSNKPNE 1388
Query: 692 VIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQI 751
+ +SD+ PE + N + C + + ++ ++ + LE +
Sbjct: 1389 QTSKRHDSDTFPELKL----TNAPGSFTNCSNTSELKEFVNPSLPREEKEEKLETVKVSN 1556
Query: 752 SSKNSDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSK 803
++++ D M S + S+ + P + G+QE LGK P+K
Sbjct: 1557 NAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNK 1730
Query: 804 TVLHAASILTEEKRSWSCTVFSQDKGC---CSRNVPKDFRIGKSPM---AKNASEFTMEA 857
V C F KG CS++ D K P+ ++ E ++E
Sbjct: 1731 CVS-------------QCAAFENPKGLIHGCSKDTRNDTEGFKYPLGHEVNHSRETSIEM 1871
Query: 858 EDSELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLNTSCP------DQVE 908
E+SELD QYL+N F+ SKRQSF+L+ P + C T S L P +Q E
Sbjct: 1872 EESELDAQYLQNTFKVSKRQSFALFSNPGNPEEECATFSAHSRSLKKQSPKVTFECEQKE 2051
Query: 909 ERNSKYLKTENLQEEKTTAENLSSVCEKFETCESA----------CVSPVSCFVSSAACV 958
E K + VC+K + + A C+S S F + +
Sbjct: 2052 ENQGKNESNIKPVQTVNITAGFPVVCQKDKPVDYAKCSIKGGSRFCLS--SQFRGNETGL 2225
Query: 959 HTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPV 1018
T + + N ++ L I + + E E ++S E ++ +
Sbjct: 2226 ITPNKHGL--LQNPYHIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENI 2387
Query: 1019 RSNRSQSDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-L 1066
S S ++N E+ F+ + ++E S+ S++ +AE+ ++G
Sbjct: 2388 PSTVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEVGSSDENIQAELGRNRGPK 2567
Query: 1067 MQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVR 1126
+ +L P +Q+ NC+ E K K E V+QTV+T S +
Sbjct: 2568 LNAMLRLGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPCLIS 2720
Query: 1127 EALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEV 1186
+ LE+ + SETPD LL D + +E SF + K++SAVF K V
Sbjct: 2721 DNLEQPMGSSHASQVCSETPDDLL-DDGEIKEDTSFAKNDIKESSAVF--------SKSV 2873
Query: 1187 NDSVVSCKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQI 1241
+S P + Q +RR A+KL+ LP FQ L+FGK
Sbjct: 2874 QRGELSRSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-------- 3029
Query: 1242 QKQVTSVVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQES 1288
V ++ S ST+ +ECL++N E+ L S N+C++ S+E+
Sbjct: 3030 ---VNNIPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKTSQEHHLSEET 3197
Query: 1289 ECSVNLFSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN------ 1342
+CS +LFSSQ + E+ L S + + Q K L ++
Sbjct: 3198 KCSASLFSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGT 3377
Query: 1343 -LNDEYQEDPNMGANL 1357
L + QE+ +M +NL
Sbjct: 3378 GLEENNQEEQSMDSNL 3425
>gb|AF019075.1|AF019075 Pan troglodytes breast and ovarian cancer susceptibility (BRCA1)
gene, partial cds
Length = 3426
Score = 173 bits (438), Expect = 2e-40
Identities = 282/1150 (24%), Positives = 463/1150 (39%), Gaps = 85/1150 (7%)
Frame = +3
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S R KE D PS E
Sbjct: 165 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE- 341
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ + D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 342 -KKVDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGS 515
Query: 410 XXXQNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYS 466
+ +E+ + L++ D S SEK + + A+I +++R +K +
Sbjct: 516 DDSHDGGSESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESN 695
Query: 467 IEDKIFGKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACI 524
EDKIFGKTY R N S + + I+ A E +E L N
Sbjct: 696 TEDKIFGKTYRRKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRATSG---- 863
Query: 525 LQPEDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTL 578
L PEDFIKK DL + P+ I E+ + + ++ EN ++ K
Sbjct: 864 LHPEDFIKKADLA-VQKTPEMINQGTNQMEQNGQVMNITNSGHENKTKGDSIQNEKNPNP 1040
Query: 579 AEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLV- 637
E E+ +K AE +S S+ +LELN + K+ K K STR A+ LV
Sbjct: 1041 IESLEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVV 1211
Query: 638 DRNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMRV 692
RN + E I+S S+EE K + K
Sbjct: 1212 SRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEDKEPATGVKKSNKPNEQ 1391
Query: 693 IKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQIS 752
+ +SD+ PE + + + C + + ++ ++ + LE + +
Sbjct: 1392 TSKRHDSDTFPELKLTNAPGSF----TNCSNTSELKEFVNPSLPREEEEEKLETVKVSNN 1559
Query: 753 SKNSDD-MAKNRSFFNPTFSCQLSNFNS-PSSKAGSQEGEMLGKLFLPQSPSKTVLHAAS 810
+++ D M S + S+ + P + G+QE L ++ + L A
Sbjct: 1560 AEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEV--------STLGKAK 1715
Query: 811 ILTEEKRSWS-CTVFSQDKGC---CSRNVPKDFRIGKSPMA---KNASEFTMEAEDSELD 863
TE + S C F KG CS++ D K P+ ++ E ++E E+SELD
Sbjct: 1716 --TEPNKCVSQCAAFENPKGLIHGCSKDTRNDTEGFKYPLGHEVNHSRETSIEMEESELD 1889
Query: 864 MQYLRNIFRSSKRQSFSLYPTP---MKACTTDDVASEKLNTSCPDQVEERNSKYLKT--- 917
QYL+N F+ SKRQSF+L+ P + C T L P ER K
Sbjct: 1890 AQYLQNTFKVSKRQSFALFSNPGNPEEECATFSAHCRSLKKQSPKVTFEREQKEQNQGKN 2069
Query: 918 -ENLQEEKTT--AENLSSVCEKFETCESA----------CVSPVSCFVSSAACVHTVENQ 964
N++ +T VC+K + + A C+S S F + + T
Sbjct: 2070 ESNIKPVQTVNITAGFPVVCQKDKPVDYAKCSIKGGSRFCLS--SQFRGNETGLITPNKH 2243
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N ++ L I + + E E ++S E ++ + S S
Sbjct: 2244 GL--LQNPYHIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 2405
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSSE-----------SNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 2406 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEVGSSDENIQAELGRNRGPKLNAMLR 2585
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ E NC+ E K K E V+QTV+T S + + LE+
Sbjct: 2586 LGVLQPEVYKQSLPESNCKHPEIK---------KQEYEEVVQTVNTDFSPCLISDNLEQP 2738
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 2739 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQRGELS 2891
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V++
Sbjct: 2892 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VSN 3038
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 3039 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 3215
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 3216 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 3395
Query: 1348 QEDPNMGANL 1357
QE+ +M +NL
Sbjct: 3396 QEEQSMDSNL 3425
>gb|AF355794.1|AF355794 Caenolestes fuliginosus BRCA1 gene, partial cds
Length = 2386
Score = 173 bits (438), Expect = 2e-40
Identities = 218/812 (26%), Positives = 337/812 (40%), Gaps = 47/812 (5%)
Frame = +3
Query: 295 SPLKNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDIC----VPSVEDV 350
S L TS L N + M+VE+ + +K+++ L + + LD+ KE IC P E
Sbjct: 3 SLLPEITSLLPNTDRMNVEKAELCNKSKQPGLASNQQSNLDESKE--ICSASKTPGAE-- 170
Query: 351 EMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXX-- 408
E E + L E++ EK P+ P + + +S + SIQKVNEW
Sbjct: 171 EQPELNANHLCERKELEEKLQCPESPRGDSGDCLSGTKVKNSIQKVNEWLFRSNDVLAPD 350
Query: 409 --XXXXQNDHAEATDASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYS 466
+AEAT+A G + +D +S ISEKT+ + DS + + + ++ + S
Sbjct: 351 YSSVRSHEQNAEATNALEYGHVE-TDGNSSISEKTDMVADSTDGSWLHAPEKNCPRPAES 527
Query: 467 --IEDKIFGKTYERGRKSNP--STILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSA 522
IEDKIFGKTY R + +P + + +++ T D+ L + +
Sbjct: 528 NNIEDKIFGKTYRR-KSVHPVLNYVTENLIVETIAPDSVIPPEPLKKTKLKRKRK---TI 695
Query: 523 CILQPEDFIKKKDLEEADRCPQGIKSSLGDA-EKEKCDENSAVKENPLLEKRKGSTLAEF 581
C LQPEDFIKK ++ + P+ + EKE+ + + + +K G + E
Sbjct: 696 CBLQPEDFIKKTNIPVIPKTPEKKNHPVDQILEKEQNGQVMSTADGQSKQKAPGCHVGEL 875
Query: 582 KE----------RGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTR 631
KE +G +K +E +G + +LELN D K TK R S RT
Sbjct: 876 KEAQASEPSSVEKGSTFKTGSEPAAGSTNQRELELNGRDAKMTKKDRPRK---RPSVRTV 1046
Query: 632 CAIHLV-DRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKM 690
CA+ LV DR+PGS + E I+SYPS+EE K + + E
Sbjct: 1047 CALELVTDRHPGSSNETELQIDSYPSSEEIRKGN----NSEQKQVRRSRRLQMLSEEIAA 1214
Query: 691 RVIKEAKNSDSGPEGSVFGVERNVLVHN-SQCK--DLRKQQD-ILSYMSLADRNGADLEA 746
K K + E V V + + S C L D +L+ S + + LEA
Sbjct: 1215 GAKKAHKPDEEVEENCVNEVSPELKIGKVSACSTDSLATDSDLVLASCSFTEGDEKSLEA 1394
Query: 747 NGIQISSKNSDDMAKNR--SFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKT 804
S++ D +A +R + S+ +Q+ L +P +P+
Sbjct: 1395 FQ---PSRDQDSLAVSRGEKLQGKRTKGNMEVLEVASTDWDTQDSTSLFPTDVPPNPT-- 1559
Query: 805 VLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDM 864
A S + T C S+N KN SE T E EDSELD
Sbjct: 1560 ---ADSGPHRNQHEVIETPKELFDDCSSKNTGSGKEDLTRQEVKNTSETTTEIEDSELDT 1730
Query: 865 QYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCPDQVEERNSKYLKTENLQEEK 924
QYL+N F+ SKRQSF+L P+P + L+ PD+ + K + +E
Sbjct: 1731 QYLQNTFKRSKRQSFALCPSPRQTSMKLRSIPRALSHQSPDKATNHGGQEKKKQGSRESD 1910
Query: 925 TTAENLSSVCEKFETCES--------ACVSPVS--CFVS----SAACVHTVE-NQDVSKV 969
+ +V C++ A S VS C ++ C H+ E N+ +S+V
Sbjct: 1911 KAVQPELAVMSSAAVCQTKEKKPGDYAKCSTVSRLCHIAPLHDDNDCDHSAENNKGISQV 2090
Query: 970 ANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTL--STGIGVESKLRLSPVRSNRSQSDQ 1027
+ + + A R+ + E+ E+T T +G ES V S+ S Q
Sbjct: 2091 PDQKQSVSPAKSSAGRS-IYTKSLLEERLDEQTTCPETVMGNESL-----VHSSLSLVSQ 2252
Query: 1028 SNTEEHAFQRTGLNAVSETYFSSESNQVEKAE 1059
SN+ E+ + T N S E +Q EK E
Sbjct: 2253 SNSGEYISKATDSNRFVGVDSSGEGSQEEKGE 2348
>gb|L78833.1|HUMBRCA1 Human BRCA1, Rho7 and vatI genes, complete cds, and ipf35 gene, partial
cds
Length = 117143
Score = 169 bits (429), Expect = 2e-39
Identities = 281/1151 (24%), Positives = 462/1151 (39%), Gaps = 85/1151 (7%)
Frame = +1
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S R KE D PS E
Sbjct: 34036 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTE- 34212
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ + D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 34213 -KKVDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGS 34386
Query: 410 XXXQNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYS 466
+ +E+ + L++ D S SEK + + A+I +++R +K +
Sbjct: 34387 DDSHDGESESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESN 34566
Query: 467 IEDKIFGKTY-ERGRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACI 524
IEDKIFGKTY ++ N S + + I+ A E +E L N
Sbjct: 34567 IEDKIFGKTYRKKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRPTSG---- 34734
Query: 525 LQPEDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTL 578
L PEDFIKK DL + P+ I E+ + + ++ EN ++ K
Sbjct: 34735 LHPEDFIKKADLA-VQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNP 34911
Query: 579 AEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLV- 637
E E+ +K AE +S S+ +LELN + K+ K K STR A+ LV
Sbjct: 34912 IESLEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVV 35082
Query: 638 DRNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMRV 692
RN + E I+S S+EE K K
Sbjct: 35083 SRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQ 35262
Query: 693 IKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQIS 752
+ +SD+ PE + + ++C + + ++ ++ + LE + +
Sbjct: 35263 TSKRHDSDTFPELKLTNAPGSF----TKCSNTSELKEFVNPSLPREEKEEKLETVKVSNN 35430
Query: 753 SKNSDD-MAKNRSFFNPTFSCQLSNFNS-PSSKAGSQEGEMLGKLFLPQSPSKTVLHAAS 810
+++ D M S + S+ + P + G+QE L ++ + L A
Sbjct: 35431 AEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQESISLLEV--------STLGKAK 35586
Query: 811 ILTEEKRSWS-CTVFSQDKGC---CSRNVPKDFRIGKSPMA---KNASEFTMEAEDSELD 863
TE + S C F KG CS++ D K P+ ++ E ++E E+SELD
Sbjct: 35587 --TEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHSRETSIEMEESELD 35760
Query: 864 MQYLRNIFRSSKRQSFSLYPTPMKA---CTTDDVASEKLNTSCP------DQVEERNSKY 914
QYL+N F+ SKRQSF+ + P A C T S L P +Q EE K
Sbjct: 35761 AQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQGKN 35940
Query: 915 LKTENLQEEKTTAENLSSVCEKFETCESA----------CVSPVSCFVSSAACVHTVENQ 964
+ V +K + ++A C+S S F + + T
Sbjct: 35941 ESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLS--SQFRGNETGLITPNKH 36114
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+ + N + L I + + E E ++S E ++ + S S
Sbjct: 36115 GL--LQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSP----EREMGNENIPSTVST 36276
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSSE-----------SNQVEKAEVVDDKG-LMQHFQP 1072
++N E+ F+ + ++E S+ S++ +AE+ ++G +
Sbjct: 36277 ISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLR 36456
Query: 1073 SPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEES 1132
+L P +Q+ NC+ E K K E V+QTV+T S + + + LE+
Sbjct: 36457 LGVLQPEVYKQSLPGSNCKHPEIK---------KQEYEEVVQTVNTDFSPYLISDNLEQP 36609
Query: 1133 LKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVS 1192
+ SETPD LL D + +E SF + K++SAVF K V +S
Sbjct: 36610 MGSSHASQVCSETPDDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQKGELS 36762
Query: 1193 CKP----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTS 1247
P + Q +RR A+KL+ LP FQ L+FGK V +
Sbjct: 36763 RSPSPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGK-----------VNN 36909
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALS-NECASP------------SQESECSVNL 1294
+ S ST+ +ECL++N E+ L S N+C++ S+E++CS +L
Sbjct: 36910 IPSQSTRHSTV-ATECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASL 37086
Query: 1295 FSSQSNMSEESVDGAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNN-------LNDEY 1347
FSSQ + E+ L S + + Q K L ++ L +
Sbjct: 37087 FSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENN 37266
Query: 1348 QEDPNMGANLG 1358
QE+ +M +NLG
Sbjct: 37267 QEEQSMDSNLG 37299
Score = 51.2 bits (121), Expect = 0.001
Identities = 24/36 (66%), Positives = 24/36 (66%)
Frame = +2
Query: 1572 TDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSY 1607
T V D E VCERTLKYFLGIAG KWVVSY
Sbjct: 64748 TSNPLSVFHSADAEFVCERTLKYFLGIAGGKWVVSY 64855
Score = 50.4 bits (119), Expect = 0.002
Identities = 31/73 (42%), Positives = 42/73 (57%)
Frame = +1
Query: 1377 FSQGEILSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDAEVLPLCRELPYCSIGGTLG 1436
FS + +Q++ MQ+NL KLQQEMA LEAVL+QHGSQ + P I +
Sbjct: 46126 FSWCHLSFLKQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYP-------SIISDSSA 46284
Query: 1437 LERMRQETENVSE 1449
LE +R ++ SE
Sbjct: 46285 LEDLRNPEQSTSE 46323
Score = 49.3 bits (116), Expect = 0.004
Identities = 20/30 (66%), Positives = 25/30 (82%)
Frame = +3
Query: 1622 EEHFEVKGDVINGRNHQGPKRARQSPAEKI 1651
+ FEV+GDV+NGRNHQGPKRAR+S K+
Sbjct: 71595 QHDFEVRGDVVNGRNHQGPKRARESQDRKV 71684
Score = 48.1 bits (113), Expect = 0.008
Identities = 22/35 (62%), Positives = 26/35 (73%)
Frame = +3
Query: 1714 AIQRKNNVAVVTREWVLDSVACFECQELDAYLVSQ 1748
AI + VVTREWVLDSVA ++CQELD YL+ Q
Sbjct: 82935 AIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 83039
Score = 43.1 bits (100), Expect = 0.27
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +2
Query: 42 VFCRFCMFKLLSRKKKGVIQCPLCKTEVTKR 72
+ RFCM KLL++KK G QCPLCK ++TKR
Sbjct: 22190 IIYRFCMLKLLNQKK-GPSQCPLCKNDITKR 22279
Score = 41.2 bits (95), Expect = 1.0
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +2
Query: 25 PVCLDVIKEPVSTKCDHVFCR 45
P L++IKEPVSTKCDH+FC+
Sbjct: 12947 PASLELIKEPVSTKCDHIFCK 13009
Score = 40.4 bits (93), Expect = 1.7
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +1
Query: 72 RSLKENSRFKQLIEGLLEAISAFELDTGVK 101
RSL+E++RF QL+E LL+ I AF+LDTG++
Sbjct: 23776 RSLQESTRFSQLVEELLKIICAFQLDTGLE 23865
Score = 38.9 bits (89), Expect = 5.1
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPV 26
MDLS + + +VQNV++AMQK LECP+
Sbjct: 4639 MDLSALRVEEVQNVINAMQKILECPI 4716
>gb|AF284030.1|AF284030 Orycteropus afer BRCA1 gene, partial cds
Length = 2788
Score = 167 bits (423), Expect = 9e-39
Identities = 237/940 (25%), Positives = 376/940 (39%), Gaps = 56/940 (5%)
Frame = +2
Query: 293 NASPLKNDTSFLK-NAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVE 351
+AS L+++ S L + M+VE+ + +K+++ L S + R + KE ++ E
Sbjct: 17 HASSLQHENSSLSLTKDRMNVEKAEFCNKSKQPGLVRSQQSRWAESKETCNDRQTLSTGE 196
Query: 352 MCEPMDDSLL-EKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXX 410
+ D L KE +KP + P ++ LN SIQKVNEWF
Sbjct: 197 KVDMKADPLYGRKEVNKQKPPCSENPR--DTEDIPWITLNSSIQKVNEWFSRSDGL---- 358
Query: 411 XXQNDHAEATDASGE--GDISLSDKD---SCISEKTNPIVDSVEFAVIERNKR-WTKQTT 464
H E ++++ E G + +S++ S SEK + + A+I ++R +K
Sbjct: 359 --DGSHDEGSESNAEIGGALEVSNEVHSYSGSSEKIDLMASEPHVALICESERVLSKPAE 532
Query: 465 YSIEDKIFGKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSA 522
+IEDKIFGKTY R N S I D IL A E A E L N
Sbjct: 533 SNIEDKIFGKTYRRKSSLPNISHITEDLILGAIATEPQVARECPLGNKLKRKRRTSG--- 703
Query: 523 CILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSA------VKENPLLEKRKGS 576
L PEDFIKK DL + P+ I E+ +EN A + ++K+K +
Sbjct: 704 --LHPEDFIKKVDLA-VQKTPEKINQENDQMEQNGQEENIADGCHENATKGEYMQKKKSA 874
Query: 577 TLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL 636
E ++ AE +S S+ +LELN + K++K K STR A+ L
Sbjct: 875 NPTESLATESVFRTKAEPISSSISNLELELNTHNSKASKKNKLRRKS---STRHIHALEL 1045
Query: 637 V-DRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
V +RNP E I+S+PS+EE K TG + K
Sbjct: 1046 VVNRNPSPPSHTELQIDSWPSSEELKKKSSEHKPIRQNTNLQLMKDQ-EATTGAKKSNKP 1222
Query: 696 AKNSDSGPEGSVFGVER--NVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISS 753
+ +G +F N+ + C Q+ ++ + +L + S+
Sbjct: 1223 NEQISTGHASDIFPKLNLTNITGFITNCSSSDNLQEFVNPSLQEEEIKENLGTIQVSDST 1402
Query: 754 KNSDDMAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEGEMLGKLFLPQSPSKTVLHAASIL 812
++ D NR S + ++ + P + +Q+ +L K + A+I
Sbjct: 1403 RDPTDEVLNRRGLQTERSVENTSISVKPDTDYSTQDSILLLKANSLRKAKTAPSQCAAIE 1582
Query: 813 TEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYLRNIFR 872
K S F +D +RN + F+ + E +E E+SELD QYL+N F+
Sbjct: 1583 NPNKLSHG---FPKD----TRNDIEGFKDLFRGEDNHVQETYIEMEESELDTQYLQNTFK 1741
Query: 873 SSKRQSFSLYPTPMKACTTDDVASEKLNTSCPDQVEERNSKYLKTENLQEEKTTAENLSS 932
SKRQSF+L+ P K T S L P+ E K EN E++ +
Sbjct: 1742 VSKRQSFALFSNPEKEFATVHAHSRSLRKQSPNITLECGE---KEENQGNEESKIK---- 1900
Query: 933 VCEKFETCESACVSPVSCFVSSAACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRP 992
CV V A + D +K + G + R+C + GN
Sbjct: 1901 -----------CVQLVLSTTGYAGACQKEKPSDYAKCSIKG----VSRLCQSSQFRGNES 2035
Query: 993 Q---KGEQGSEKTLS-------TGIGVESKLRL---------------------SPVRSN 1021
+ E G + L T V++K + S ++S
Sbjct: 2036 EIITANEHGVSQNLDQTPSLSPTRSSVKAKCKTNLSKERFEQQKISHERVMGNESTIQST 2215
Query: 1022 RSQSDQSNTEEHAFQRTGLNAVSETYFS----SESNQVEKAEVVDDKG-LMQHFQPSPML 1076
QSN E AF+ ++++E S S + +AE+ ++G + ++
Sbjct: 2216 VGTVSQSNIRESAFKEASSSSINEVGSSVNEIGSSGENIQAELGKNRGPKLNAVLKLCLM 2395
Query: 1077 CPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGH 1136
P +Q+P NC+ K +G E V+Q V+TG S + + L + +
Sbjct: 2396 QPEEYKQSPPISNCKHPSIK--------TQGQNEGVVQAVNTGFSSCLISDNLGQPMGSS 2551
Query: 1137 SDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL D+ +E+ SF V+ K+ SAVF K
Sbjct: 2552 HASQICSETPDDLL-DDDKIKENTSFAVSGIKERSAVFSK 2668
>gb|AF332046.1|AF332046 Graphiurus murinus BRCA1 (BRCA1) gene, partial cds
Length = 2919
Score = 167 bits (423), Expect = 9e-39
Identities = 231/941 (24%), Positives = 387/941 (40%), Gaps = 64/941 (6%)
Frame = +1
Query: 300 DTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED-VEM-CEP 355
++S L + M+VE+ + +K+++ L S + R + KE D PS E V++ +P
Sbjct: 139 NSSLLLTKDRMNVEKAEFCNKSKQPGLARSQQSRWAESKETCNDRQTPSTEKKVDLNTDP 318
Query: 356 MDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQND 415
+ S KE +KP P + ++ LN SIQKVNEWF ++
Sbjct: 319 LHRS---KEQNKQKP--PCSENPSDTQDIPWITLNSSIQKVNEWFSRSNEILTSDDSHDE 483
Query: 416 HAEAT-DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRW-TKQTTYSIEDKIFG 473
+E+ + +G + D++S SEK + + A+I +++R +K +IEDKIFG
Sbjct: 484 GSESNAEVAGALVPNEVDRNSGSSEKIDLLASDPHNALICKSERVRSKPVESNIEDKIFG 663
Query: 474 KTYERGRK-SNPSTILRDILP-ATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDFI 531
KTY R N S + +++ A E +E L N S L PEDFI
Sbjct: 664 KTYRRKASLPNLSHVPENLITGAFATEPQITQERPLTNKLKRKRK----STLCLHPEDFI 831
Query: 532 KKKDLEEADRCPQGIKSSLGDAEKEKCDENSAV-----------KENPLLEKRKGSTLAE 580
KK DL + P+ + + E ++ ++N V +N ++K K L E
Sbjct: 832 KKTDLTVVQKTPEKV-----NQETDQMEQNDQVMSITNRGHENESKNDYVQKEKNVNLVE 996
Query: 581 FKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRN 640
E+ ++ AE +S S+ +LELN + K+ K K STR A+ LV RN
Sbjct: 997 SLEKESAFRTKAEPISSSISNMELELNVYNSKAPKKNRLRRKS---STRHIHALELVSRN 1167
Query: 641 PGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNSD 700
+ E I+SY S+EE K D ++ + +K K ++
Sbjct: 1168 TSPPNGTELQIDSYTSSEETQKED-----SNQMSVGHDRKLQFMEDAESVTGVKNNKPNE 1332
Query: 701 SGPEGSVFGVERNVLVHN-----SQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+ + + + N + C K ++ ++ + +LEA + S+K+
Sbjct: 1333 QISKRHINDAFPELTLTNKPGLFTNCSGSNKLKEFVNPGLQKEEIEENLEAIQVSTSTKD 1512
Query: 756 SDDMA----KNRSFFNPTFSCQLSNFNSPSSKAGSQ------EGEMLGKLFLPQSPSKTV 805
D+ K T S +S P + G+Q + + LGK + T
Sbjct: 1513 PKDLVLSEEKGLQTERSTESTSMSLV--PDTDYGTQDSISVLQADTLGKARTASNQCVTQ 1686
Query: 806 LHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQ 865
A E S+D +RN + F+ + E E E+SELD Q
Sbjct: 1687 YEAIENPKELIHG------SKD----TRNDTEGFKDSLRCEVNHIQETNAEMEESELDTQ 1836
Query: 866 YLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCP-------DQVEERNSKYLKTE 918
YL+N F++S RQSF+L+ K CTT + + L P + E + K K
Sbjct: 1837 YLQNTFQASSRQSFALFSNSGKECTTVYASPKPLRKQSPKVSLEYEQKKENKEKKEAKIT 2016
Query: 919 NLQEEKTTAENLSSVCEKFETCESA--CVSPVSCFVSSAAC------VHTVENQDVSKVA 970
+ T + +C++ + + A + VS S + T + +S+
Sbjct: 2017 LHVQAVNTPTDFPMICQEDKPGDDAKHSIPGVSSLYPSFQLRGNKTELVTADQHGISQ-- 2190
Query: 971 NHGNLTTLLRICA-ARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSN 1029
N ++ + I + + ED N ++ + +L +G E R +S Q+N
Sbjct: 2191 NPYHMPPISPITSFVKTEDKNLSEERFEKHSLSLEKAVGCE--------RIVQSTISQNN 2346
Query: 1030 TEEHAFQRTGLNAVSETYFSSESNQVE-------------KAEVVDDKG-LMQHFQPSPM 1075
E +F+ N+ S T S +N+V +AE+ +G + +
Sbjct: 2347 VRESSFKEA--NSGSNTEIGSSTNEVGSSTNKRFQGGENIQAELARKRGPKLNAVLRLGL 2520
Query: 1076 LCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKG 1135
+ P A +Q+ NCE E K + E+ V+Q V T S + + + LE +
Sbjct: 2521 MQPEAYKQSLPVSNCEHPEIK---------RQGEDEVVQAVDTDFSPYLISDNLEHPMGN 2673
Query: 1136 HSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL D++ +++ SF D SAVF K
Sbjct: 2674 THASQICSETPDDLL-DDDEIQDNISFAEGGINDRSAVFSK 2793
>gb|AF284000.1|AF284000 Chaetophractus villosus BRCA1 gene, partial cds
Length = 2794
Score = 166 bits (421), Expect = 2e-38
Identities = 240/929 (25%), Positives = 387/929 (40%), Gaps = 52/929 (5%)
Frame = +2
Query: 300 DTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEMCEPMD 357
++S L + ++VE+ + +K+++ L + R + KE D P+ E + +
Sbjct: 41 NSSLLLTKDRVNVEKAEFCNKSKQPGLARRQQSRWAESKETCNDRQTPNTE--KKVDVAA 214
Query: 358 DSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQNDHA 417
DSL ++ + K P ++ LN SIQKVNEWF + +
Sbjct: 215 DSLYGRKE-LNKQKLPCSESPRDTQDIPWITLNSSIQKVNEWFSRSDDLLTSDDSHDGGS 391
Query: 418 EATDASGEGDISLSDKD---SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIEDKIFG 473
E+ A G + + ++ S SEK + + A+I ++R +K +I+DKIFG
Sbjct: 392 ESK-AEVAGALKVPNEVNGYSSSSEKIDLLASDPHNALIFASERVQSKPAESNIKDKIFG 568
Query: 474 KTYERGRK-SNPSTILRDI-LPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDFI 531
KTY R N S I D+ + A E +E L N ++C L PEDFI
Sbjct: 569 KTYHRKASFPNLSHITEDLFIGAIATEPKIIQEHSLTNKIKRKRRT---TSC-LHPEDFI 736
Query: 532 KKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVK------ENPLLEKRKGSTLAEFKERG 585
KK DL + P+ I E+ NSA + ++K + + E E+
Sbjct: 737 KKVDLTVVQKTPEKINQGTDQMEQNDQVMNSANSGHENETKGDYVQKEENANPIESLEKE 916
Query: 586 LQWKNAAEKVSGKCSDGQLELNNSDQK-STKNACSTAKGCRHSTRTRCAIHLV-DRNPGS 643
++ E +S S+ +LELN + K S KN RH A+ LV +RNP
Sbjct: 917 SAFRTKGEPISSSISNMELELNIYNSKASKKNRLRRMSSTRHIH----ALELVGNRNPSP 1084
Query: 644 FDLAEPLINSYPSNEEPSKADCXXX-----XXXXXXXXXXXXXXITKETGKMRVIKEAKN 698
E I+S S EE K + K I E
Sbjct: 1085 PKHTELQIDSCSSTEEIEKINSNQKPIRHNRMLQLMKEKENTTGAKKNNKPNEQISERHA 1264
Query: 699 SDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDD 758
SD PE + NV +C + K Q+ ++ SL +LE + +++N +D
Sbjct: 1265 SDVFPELKL----TNVTDFLPKCSNPDKLQEFVN-SSLQGEVAENLETIQVSDTTRNPED 1429
Query: 759 M--AKNRSFFNPTFSCQLSNFNSPSSKAGSQ------EGEMLGKLFLPQSPSKTVLHAAS 810
+ ++ +S + S P + G+Q E + LGK +KT L+
Sbjct: 1430 LVLSEGKSLQTQRSAESTSISVVPDTDYGTQDSVSLLEADTLGK-------AKTALNQP- 1585
Query: 811 ILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYLRNI 870
+++ + T S +RN +DF+ + E ++E E+SELD QYL+N
Sbjct: 1586 -MSQYAAIKNATELSHGCAKDTRNDTEDFKDPLRHEVTHTQETSVEMEESELDTQYLQNT 1762
Query: 871 FRSSKRQSFSLYPTPMKACTTD-------DVASEKLNTSCPDQVEERNSKYLKTENLQEE 923
F+ SKRQSF+L+ P C T S K+ C + E + K K +++Q
Sbjct: 1763 FKISKRQSFALFSNPENECATVCAHSRFLGKQSPKVIFECRQKEENQGKKESKIKHVQAV 1942
Query: 924 KTTAENLSSVCEK-----FETCESACVSPV---SCFVSSAACVHTVENQDVSKVANHGNL 975
TTA VC+K + C VS + S F + + + T ++S+ N +
Sbjct: 1943 HTTA-GFPVVCQKDKPGDYAKCSIQEVSRLCQSSQFRGNESELITANEHEISQ--NPDQM 2113
Query: 976 TTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSNTEEHAF 1035
+L I ++ E+ E T+S V ++ + V+S S +N E+AF
Sbjct: 2114 PSLSHIRSSVKTKCKENLSEEKFEELTISLERTVGNE---NIVQSTVSTISHNNIRENAF 2284
Query: 1036 QRTGLNAVSETYFSSESNQVE-------KAEVVDDKGLMQHFQPSPMLCPTACQQNPAEF 1088
+ ++++E S E+ Q E K + GLMQ P +Q+
Sbjct: 2285 KEASSSSINEVGSSGENIQAELGRNRAPKLNAMLRLGLMQ---------PEVYKQSLPIT 2437
Query: 1089 NCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDL-SETPD 1147
+C+ E K +G E IQ V T S + + LE + G+S + + SETPD
Sbjct: 2438 SCKHPEIK--------RQGENEEAIQAVDTDFSPHLISDNLELPM-GNSHVSQICSETPD 2590
Query: 1148 GLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
LL D++ +E+ SF K+ SAVF K
Sbjct: 2591 DLL-DDDEIKENNSFAEBGIKERSAVFSK 2674
>gb|AF019077.1|AF019077 Pongo pygmaeus breast and ovarian cancer susceptibility (BRCA1) gene,
partial cds
Length = 3426
Score = 166 bits (420), Expect = 2e-38
Identities = 275/1138 (24%), Positives = 451/1138 (39%), Gaps = 65/1138 (5%)
Frame = +3
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S R KE D PS E
Sbjct: 165 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRQTPSTE- 341
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ + D L E++ ++ L P + +V LN SIQKVNEWF
Sbjct: 342 -KKVDLNADPLCERKEWNKQKL-PCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGS 515
Query: 410 XXXQNDHAEATDASGEGDISLSDKD--SCISEKTNPIVDSVEFAVIERNKR-WTKQTTYS 466
+ +E+ + L++ D S SEK + + A+I +++R +K +
Sbjct: 516 DDSHDGRSESNAKVADVLDVLNEVDEYSGSSEKIDLLASDPHEALICKSERVHSKSVESN 695
Query: 467 IEDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACI 524
IEDKIFGKTY R N S + + I+ A E +E L N
Sbjct: 696 IEDKIFGKTYRRKASLPNLSHVTENLIIGAFVTEPQIIQERPLTNKLKRKRRATSG---- 863
Query: 525 LQPEDFIKKKDLEEADRCPQGIKSSLGDAEK--EKCDENSAVKENPL----LEKRKGSTL 578
L PEDFIKK DL + P+ I E+ + + ++ EN ++ K
Sbjct: 864 LHPEDFIKKADL-AVQKTPEMINQGTNQMEQNGQVMNITNSGHENKTKGDSIQNEKNPNP 1040
Query: 579 AEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-V 637
E E+ +K AE +S S+ +LELN + K+ K K STR A+ L V
Sbjct: 1041 IESLEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKS---STRHIHALELVV 1211
Query: 638 DRNPGSFDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRV 692
RN + E I+S S+EE K K
Sbjct: 1212 SRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEDKEPATGAKKSNKPNEQ 1391
Query: 693 IKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQIS 752
+ +SD+ PE + N + C + + ++ ++ + L + +
Sbjct: 1392 TSKRHDSDTFPELKL----TNAPGSFTNCSNTSELKEFVNPSLPREEKEEKLGTVKVSNN 1559
Query: 753 SKNSDD-MAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEG------EMLGKLFLPQSPSKT 804
+K+ D M S + S+ + P + G+QE LGK P+K
Sbjct: 1560 AKDPKDLMLSGGRVLQTERSVESSSISLVPGTDYGTQESISLLEVSTLGK--AKTEPNKC 1733
Query: 805 VLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDM 864
V A+ ++ C F +RN + F+ ++ E ++E E+SELD
Sbjct: 1734 VSQCAAFENPKELIHGC--FKD-----TRNDTEGFKYPLGHEVNHSQETSIEMEESELDT 1892
Query: 865 QYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLNTSCP------DQVEERNSKYL 915
QYL+N F+ SKRQSF+L+ P + C T S L P +Q EE K
Sbjct: 1893 QYLQNTFKVSKRQSFALFSNPGNPEEECATFSAHSRSLKKQSPKVTFECEQKEENQGKNE 2072
Query: 916 KTENLQEEKTTAENLSSVCEKFETCESA----------CVSPVSCFVSSAACVHTVENQD 965
+ VC+K + + A C+S S F + + T
Sbjct: 2073 SNIKPVQTANITAGFPVVCQKDKPVDYAKCSIKGGSRFCLS--SQFRGNETGLITPNKHG 2246
Query: 966 VSKVANH----GNLTTLLRICAARN------EDGNRPQKGEQGSEKTLSTGIGVESKLRL 1015
+S+ H + + ++ +N E+ + + E G+E ST + + S+ +
Sbjct: 2247 LSQNPYHIPPLFPIKSFVKTKCKKNLLEENSEEHSMSPEREMGNENIPST-VSIISRNNI 2423
Query: 1016 SPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPM 1075
+ S N + G ++++E S E+ Q E K + +
Sbjct: 2424 RENVFKEASSSNINEVGSSTNEVG-SSINEVGSSDENIQAELGRSRGPK--LNAMLRLGV 2594
Query: 1076 LCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKG 1135
L P +Q+ N + E K K E V+QTV+T S + + LE+ ++
Sbjct: 2595 LQPEVYKQSFPGSNGKHPEIK---------KQEYEEVLQTVNTDFSPCLISDNLEQPMRS 2747
Query: 1136 HSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKP 1195
SETP+ LL D + +E SF + K++SAVF K V +S P
Sbjct: 2748 SHASQVCSETPNDLL-DDGEIKEDTSFAENDIKESSAVF--------SKSVQRGELSRSP 2900
Query: 1196 ----RSEGIQRFRRRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQ---VTS 1247
+ Q +RR A+KL+ LP FQ L+FGK + P Q + T
Sbjct: 2901 SPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVSNIPSQSTRHSTVATE 3080
Query: 1248 VVQSSANPSTLPCSECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVD 1307
+ + + L LN+ + Q L A S+E++CS +LFSSQ + E+
Sbjct: 3081 CLSKNTEENLLSLKNSLNDYSNQVILVKASQEH--HLSEETKCSASLFSSQCSELEDLTA 3254
Query: 1308 GAQELKKTLTQVSNVKKSKEAPQSCSGGLKRLKNNLNDEYQEDPNMGANLGEASGYDS 1365
+ + + K+ + +S GL K ++D+ + ++ N E G DS
Sbjct: 3255 NTNTQDRFF--IGSSKQMRHQSESQGVGLSD-KELVSDDEERGTDLEENNQEEQGVDS 3419
>gb|AF284002.1|AF284002 Bradypus tridactylus BRCA1 gene, partial cds
Length = 2815
Score = 166 bits (419), Expect = 3e-38
Identities = 243/943 (25%), Positives = 388/943 (40%), Gaps = 64/943 (6%)
Frame = +2
Query: 298 KNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEMCEP 355
+ ++S L M+VE+ + +K+++ L S + R + KE D PS E ++
Sbjct: 35 RENSSLLLTKNRMNVEKAEFCNKSKQPGLARSQQNRWAESKETRNDRQTPSTEK-KVDVD 211
Query: 356 MDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQND 415
D KE +KP + P ++ LN SIQKVNEWF N
Sbjct: 212 ADPLYGRKELNKQKPPCSESPQ--NTQDIPWITLNSSIQKVNEWFSRSDDILTSDDSHNG 385
Query: 416 HAEATDASGEGDISLS---DKDSCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIEDKI 471
+E+ +A G + + D S SEK + I A+I +R +K T +IEDKI
Sbjct: 386 GSES-NAEVVGALKVPNEVDGYSGSSEKIDLIASDPHNALIFAGERVQSKPTETNIEDKI 562
Query: 472 FGKTYERGRK-SNPSTILRDI-LPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPED 529
FGKTY R N S I ++ + A + +E L L PED
Sbjct: 563 FGKTYHRKASLPNLSHIAENLFIGAIATKPKITQEHPLTKKIKHKSRTTSG----LHPED 730
Query: 530 FIKKKDLEEADRCPQGIKSSLGDAEKEKCD---------ENSAVKENPLLEKRKGSTLAE 580
FIKK DL + P+ I E++ EN ++ ++K K + E
Sbjct: 731 FIKKVDLTVVQKMPEKINQGTDQMEQKNSQVINIANSGHENET--KDDYVQKEKNANPTE 904
Query: 581 FKERGLQWKNAAEKVSGKCSDGQLELNNSDQK-STKNACSTAKGCRHSTRTRCAIHLV-D 638
E+ ++ E +S S+ +LELN + K S KN RH A+ LV +
Sbjct: 905 SLEKESAFRTEGEPISSSISNMELELNIFNSKVSKKNRLKRMSSTRHIH----ALELVAN 1072
Query: 639 RNPGSFDLAEPLINSYPSNEEPSKADCXXX----XXXXXXXXXXXXXXITKETGKMRV-I 693
RNP + E I+S S+EE K + +TK++ K I
Sbjct: 1073 RNPSQPNHNELQIDSCSSSEEIKKENSVQKPIRHSRMLQLLKGKETPTVTKKSNKRNEQI 1252
Query: 694 KEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISS 753
+ +SD+ PE ++ NV ++C K Q+ ++ SL +LE IQ+S
Sbjct: 1253 SKRHSSDAFPELNL----TNVTGFLTKCSSSDKLQEFVN-SSLQGEVAENLET--IQVSD 1411
Query: 754 KNSDDMA----------KNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSK 803
D A RS + + + E + LGK +P++
Sbjct: 1412 STRDPGALVLSGGKGLQTERSLESTSITMIPETDYDTQDSISLLEADTLGKA--KAAPNQ 1585
Query: 804 TVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELD 863
V A+I K C S+D +R+ ++F+ + E +E E+SELD
Sbjct: 1586 HVSQYAAIGNATKLFHGC---SKD----TRSDTENFKDPLRHEVNHTQETFVEMEESELD 1744
Query: 864 MQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCPD------QVEERNSKYLKT 917
QYL+N F+ SKRQSF+L+ P K C T S L P Q E++ K K
Sbjct: 1745 TQYLQNTFKISKRQSFALFSNPEKECATVSAHSRPLGKQSPKVTFDCRQKEDQEKKESKI 1924
Query: 918 ENLQEEKTTAENLSSVCEK-----FETCESACVSPVS---CFVSSAACVHTVENQDVSKV 969
+++Q TTA+ VC+K + C VS + F + + T + ++S+
Sbjct: 1925 KHVQAVHTTAD-FPVVCQKDKPGDYAKCSIQGVSKLCQLFQFRGNESEPITADEHEISQ- 2098
Query: 970 ANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLS--TGIGVESKLR--LSPVRSNRSQS 1025
N + +L + ++ E+ E T+S +G E ++ +SP+
Sbjct: 2099 -NPDQMPSLSPMKSSVKSKFKENLSEERFEEHTVSLERAVGKEHIIQRTVSPI------- 2254
Query: 1026 DQSNTEEHAFQRTGLNAVSETYFS-----------SESNQVEKAEVVDDKG-LMQHFQPS 1073
Q+N E AF+ ++++E S S + +AE+ ++G +
Sbjct: 2255 SQNNIRESAFKEASSSSINEVGSSVNEVGSSVNEVGSSGENTQAELGRNRGSKLSAMLRL 2434
Query: 1074 PMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESL 1133
++ P +Q+ NC+ E K +G E V+Q V T L + + LE +
Sbjct: 2435 SLMQPEVYKQSLPITNCKHPEIK--------KQGENEEVVQAVKTCL----ISDNLELPM 2578
Query: 1134 KGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL D + +E+ SF + K+ SAVF K
Sbjct: 2579 GSSHASQICSETPDDLL-DDGEIKENNSFAESGIKERSAVFTK 2704
>gb|AF284019.1|AF284019 Dugong dugon BRCA1 gene, partial cds
Length = 2773
Score = 165 bits (417), Expect = 5e-38
Identities = 241/939 (25%), Positives = 382/939 (40%), Gaps = 55/939 (5%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + HK+++ L S + R + KE D PS E
Sbjct: 17 HASSLQHENSSLLLTKDRMNVEKAEFCHKSKQPGLARSQQSRWAESKETCNDRQTPSTEK 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
M+ + L + V K P ++ LN SIQKVNEWF
Sbjct: 197 KV---DMNANPLYERKEVNKQKPPCSESVRDTQDIPWLTLNSSIQKVNEWFFRSDGLDDL 367
Query: 410 XXXQNDHAEATDASGEGDISLSDKD---SCISEKTNPIVDSVEFAVIERNKRWT-KQTTY 465
+D ++A G + + ++ S SEK + + A+I ++R K
Sbjct: 368 ----HDKGSESNAEVAGALEVPEEVHGYSSSSEKIDLMASDPHSALICESERVLFKPAES 535
Query: 466 SIEDKIFGKTYERGR-KSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSAC 523
+IEDKIFGKTY R + S + D I+ A E A+E L N
Sbjct: 536 NIEDKIFGKTYRRKAILPHLSHVTEDLIIGAVATEPQIAQERPLTNKLKRKRRTSG---- 703
Query: 524 ILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSA------VKENPLLEKRKGST 577
L PEDFIKK DL + P+ I E+ N A ++ ++K K +
Sbjct: 704 -LHPEDFIKKVDLAVVQKTPEKINQETDQVEQNGQVMNIANGGHGNETKDDYVQKEKNAN 880
Query: 578 LAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL- 636
E + ++ AE +S S+ +LELN + K+ K K STR A+ L
Sbjct: 881 PTESLTKESAFRTKAEPISSSISNMELELNMHNSKAPKKNRLRRKS---STRHIHALELV 1051
Query: 637 VDRNPGSFDLAEPLINSYPSNEEPSKAD----CXXXXXXXXXXXXXXXXXITKETGKMRV 692
V+RNP E I+S+ S+EE K+ K
Sbjct: 1052 VNRNPSPPTHTELQIDSWSSSEEIKKSSEQKPVRHNRNLQLMKNQETTTGAKKSNKPKEQ 1231
Query: 693 IKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEAN--GIQ 750
I + SD+ PE ++ + + C Q+ + G ++E N IQ
Sbjct: 1232 ISKRHASDAYPELNLTSTTGLI----TNCSSSHNYQEFNPSL-----QGEEIEENLGTIQ 1384
Query: 751 ISSKNSD--DMAKNRS-FFNPTFSCQLSNFN-SPSSKAGSQ------EGEMLGKLFLPQS 800
+S++ D D+ N S + ++ + P + GSQ E + L K +
Sbjct: 1385 VSNRTRDPEDLVLNGGRGLQTEISVESTSISVIPDTDYGSQNSISLLEADTLRK--AKTA 1558
Query: 801 PSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDS 860
P++ A+I + C +D +RN +DF+ + E +E ED
Sbjct: 1559 PNQCASQCAAIENPNELIHGC---PKD----TRNDTEDFKDLLRCEVNHIQETCVEMEDX 1717
Query: 861 ELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCP-------DQVEERNSK 913
ELD QYL++ F+ SKRQSF+L+ P K C T S+ L P ++ E + +K
Sbjct: 1718 ELDTQYLQSTFKVSKRQSFALFSNPEKECATICAHSKSLRKQSPKVTPEYGEEEENQGNK 1897
Query: 914 YLKTENLQEEKTTAENLSSVCEKFETCESACVSPV---------SCFVSSAACVHTVENQ 964
K ++ Q TTA C+K + S + S F S + T
Sbjct: 1898 ESKIKHEQAVHTTA-GYPEDCQKEKKPSDYTKSSIKGVSRLCQSSQFRGSESQHITAGEH 2074
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+S+ N + L I A+ N ++ + +L +G E S V+S S
Sbjct: 2075 GISQ--NPDQMPLLSPIRASVKSKKNLSEERFEEHTISLERAVGNE-----SIVQSTVST 2233
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSSES-------NQVEKAEVVDDKGLMQHFQPSPMLC 1077
Q++ +E A + ++++E S E+ N+ K V GLMQ
Sbjct: 2234 VSQNDIKESASKEASSSSINEVGSSGENIRAELGRNRGPKLNAVLRLGLMQ--------- 2386
Query: 1078 PTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHS 1137
P +Q+ NC+ E K +G E V+Q V+ S + + LE+ +
Sbjct: 2387 PEVYKQSLPVSNCKRPEIK--------RQGENEGVVQDVNMDFSPCLISDNLEQPMGSSR 2542
Query: 1138 DFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL D++ +E+ SF + K+ SAVF K
Sbjct: 2543 ASQICSETPDDLL-DDDEIKENISFAESGIKERSAVFSK 2656
>gb|AF284020.1|AF284020 Trichechus manatus BRCA1 gene, partial cds
Length = 2794
Score = 164 bits (415), Expect = 8e-38
Identities = 231/932 (24%), Positives = 378/932 (39%), Gaps = 48/932 (5%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + HK+++ L S + R + KE D PS E
Sbjct: 17 HASSLQHENSSLLLTKDRMNVEKAEFCHKSKQPGLTRSQQSRWAESKETCNDRQTPSTEK 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
M+ + L + V K P ++ LN SIQKVNEWF
Sbjct: 197 KV---DMNANPLYERKEVNKQKPPCSESVRDTQDIPWLTLNSSIQKVNEWFFRSDGLDDL 367
Query: 410 XXXQNDHAEATDASGEGDISLSDKD---SCISEKTNPIVDSVEFAVIERNKR-WTKQTTY 465
+D ++A G + + ++ S SEK + + A+I ++R +K
Sbjct: 368 ----HDKGSESNAEVAGALEVPEEVHGYSSSSEKIDLMASDPHSALICESERVLSKPAES 535
Query: 466 SIEDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSAC 523
+IEDKIFGKTY R + S + D I+ A E A+E L N
Sbjct: 536 NIEDKIFGKTYRRKAILPHLSHVTEDLIIGAVATEPQIAQERPLTNKLKRKRRTSG---- 703
Query: 524 ILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSA------VKENPLLEKRKGST 577
L PEDFIKK DL + P+ I E+ N A ++ ++K K +
Sbjct: 704 -LHPEDFIKKVDLAVVQKTPEKINQETDQVEQNGQVMNIANGGHENETKDDYVQKEKNAN 880
Query: 578 LAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL- 636
E + ++ AE +S S+ +LELN + K+ K K STR A+ L
Sbjct: 881 PTESLTKESAFRTKAEPISSSISNMELELNMHNSKALKKNRLRRKS---STRHIHALELV 1051
Query: 637 VDRNPGSFDLAEPLINSYPSNEEPSKAD----CXXXXXXXXXXXXXXXXXITKETGKMRV 692
V+RNP E I+S+ S++E K+ K
Sbjct: 1052 VNRNPSPPTHTELQIDSWSSSDEIKKSSEQKPVRHNRNLQLMKNQETTTGAKKSNKPKEQ 1231
Query: 693 IKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQIS 752
I + SD+ PE ++ + + C Q ++ + +L A +
Sbjct: 1232 ISKRHASDTYPELNLTSTTGLI----TNCSSSHNYQKFVNPSLQGEEIEENLGATQVSNR 1399
Query: 753 SKNSDDMAKNRS-FFNPTFSCQLSNFN-SPSSKAGSQEGEMLGKLFLPQSPSKTVLHAAS 810
+++ +D+ N S + ++ + P + GSQ L + + H AS
Sbjct: 1400 TRDPEDLVLNGGRGLQTEISVESTSISVIPDTDYGSQNSISLLEADTLRKAKTAPNHCAS 1579
Query: 811 ILTEEKRSWSCTVFSQDK----GC--CSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDM 864
C GC +RN +DF+ + E +E EDSELD
Sbjct: 1580 ---------QCAAIENPNELIHGCPKDTRNDTEDFKDLLRCEVNHVQETCIEMEDSELDT 1732
Query: 865 QYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCP-------DQVEERNSKYLKT 917
QYL++ F+ SKRQSF+L+ P K C T S+ L P ++ E + +K K
Sbjct: 1733 QYLQSTFKVSKRQSFALFSNPEKECATICAHSKSLRKQSPKVTPEYGEKEENQGNKESKI 1912
Query: 918 ENLQEEKTTAENLSSVCEK------FETCESACVSPV--SCFVSSAACVHTVENQDVSKV 969
++ Q TTA C+K + C + VS + S + H +S+
Sbjct: 1913 KHEQAVHTTA-GYPEDCQKEKKPSDYTKCSTKGVSRLCQSSQFRGSESEHITGEHGISQ- 2086
Query: 970 ANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSN 1029
N + L I A+ N ++ + +L +G E S V+S S Q+N
Sbjct: 2087 -NPDQMPLLSPIRASVKSKKNLSEERFEEHTISLERAVGNE-----SIVQSTVSTVSQNN 2248
Query: 1030 TEEHAFQRTGLNAVSETYFS----SESNQVEKAEVVDDKG-LMQHFQPSPMLCPTACQQN 1084
+E A + ++++E S S + +AE+ ++G + ++ P +Q+
Sbjct: 2249 IKESASKEASSSSINEVGSSVNEVGSSGENIEAELGRNRGPKLNAVLRLGLMQPEVYKQS 2428
Query: 1085 PAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDLSE 1144
NC+ E K +G E V++ V+ S + + LE+ + SE
Sbjct: 2429 LPVSNCKHPEIK--------RQGENEGVVEDVNMDFSPCLISDNLEQPMGSSRASQICSE 2584
Query: 1145 TPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
TPD LL D++ +E+ SF + K+ SAVF K
Sbjct: 2585 TPDDLL-DDDEIKENISFAESGIKERSAVFSK 2677
>gb|AF284001.1|AF284001 Tamandua tetradactyla BRCA1 gene, partial cds
Length = 2836
Score = 162 bits (411), Expect = 2e-37
Identities = 239/943 (25%), Positives = 379/943 (39%), Gaps = 59/943 (6%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPS-VEDV 350
+AS L+++ +S L + +VE+ + K+++ L S + R + KE C
Sbjct: 17 HASSLQHENSSLLLTKDRKNVEKAEFCDKSKQPGLARSQQSRWAESKET--CNDRHTTST 190
Query: 351 EMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXX 410
E +D L + ++K P + ++ LN SIQKVNEWF
Sbjct: 191 EKKVDVDADPLHRRKELKKWKSPYSENPRGTQDIPWITLNSSIQKVNEWFSRSDDILTSN 370
Query: 411 XXQND----HAEATDASG-EGDISLSDKDSCISEKTNPIVDSVEFAVI-ERNKRWTKQTT 464
N+ +AE DAS D+ D+ S SEK + I A+I K +K T
Sbjct: 371 DSCNEGSELNAEVADASKVPNDV---DRYSGSSEKIDLIASDPHNALICASEKVQSKPTE 541
Query: 465 YSIEDKIFGKTYERGRK-SNPSTILRDI-LPATKKEDAAAEEGCLNNSXXXXXXXXXXSA 522
+I+DKIFGKTY R N S I +D+ + A E +E L N
Sbjct: 542 SNIKDKIFGKTYHRKASLPNLSRIAKDLFIGAVAAEPKITQELPLTNEMKLKRRTTSG-- 715
Query: 523 CILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVKENP------LLEKRKGS 576
L PEDFIKK DL + P+ I E+ N A N ++K K +
Sbjct: 716 --LHPEDFIKKVDLTVVQKKPKMINQGTNQIEQNCQLMNIANSGNENETKGDFVQKEKSA 889
Query: 577 TLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL 636
E E+ ++ E +S S+ +LELN + K++K STR A+ L
Sbjct: 890 NPTESSEKESAFRTKGEPISSSISNMKLELNTCNSKASKKNRLRRMS---STRHMHALEL 1060
Query: 637 V-DRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXIT-----KETGKM 690
V +R P + E I+S S+EE K T K +
Sbjct: 1061 VANRKPSQPNHTELQIDSCSSSEEIKKKKSDQKPIRHSRTVQFMKDKETAIGAKKSNKRN 1240
Query: 691 RVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQ 750
I + SD+ PE ++ NV ++C + K Q+ ++ SL +LE IQ
Sbjct: 1241 EQINKRHASDAFPELNL----TNVTGFPTKCSNSDKLQEFVN-SSLQGEAAENLET--IQ 1399
Query: 751 ISSKNSD----------DMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQS 800
+S D ++ RS + + S E LGK +
Sbjct: 1400 VSDTTMDPEGLVLSEGKNLQTERSVESTSISLVPDTDYGTQDSISLLEAATLGKA--KAA 1573
Query: 801 PSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDS 860
P++ V A++ + C S+D +RN +DF+ + +E E+S
Sbjct: 1574 PNQHVSLCAAVGNATELVHGC---SKD----TRNDTEDFKDSLRHEVNHTQGTVIEKEES 1732
Query: 861 ELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCP-------DQVEERNSK 913
ELD QY ++ SKRQSF+LY K C T S + P + E + K
Sbjct: 1733 ELDTQYXXXXYKISKRQSFALYSNSEKECVTICAHSRSVRKQSPKVTFDYRQKEENQGKK 1912
Query: 914 YLKTENLQEEKTTAENLSSVCEK------FETCESACVSPV---SCFVSSAACVHTVENQ 964
K +++Q TTA S VC+K + C VS + S F + + + T
Sbjct: 1913 ESKIKHVQAVHTTA-GFSVVCQKDKKPHDYAKCSIQGVSKLCESSQFRGNESELITANEH 2089
Query: 965 DVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
+S N + +L ++ + E+ E T+S V ++ S ++S S
Sbjct: 2090 GIS--PNPDQMPSLSPNRSSVKTKYKKNLSEERFEEHTVSLDRAVGNE---SIIQSTVST 2254
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFS-----------SESNQVEKAEVVDDKGLMQHFQPS 1073
Q+N E F+ ++++E S S + +AE+ ++ +
Sbjct: 2255 ISQNNIRESTFKEASSSSINEVGSSINEVGSSINEVGSSGENVQAELGRNRPKLNAMLRL 2434
Query: 1074 PMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESL 1133
++ P +QN N +L+E K +G E V+Q V+T S + + LE +
Sbjct: 2435 GLMQPEVYEQNLPITNFKLSEIK--------KQGENEEVVQAVNTDFSPCLISDNLELPM 2590
Query: 1134 KGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL D++ +E+ SF + K+ SAVF K
Sbjct: 2591 GSSRVSQICSETPDDLL-DDDEIKENNSFAESGVKERSAVFSK 2716
>gb|AF284014.1|AF284014 Sus scrofa BRCA1 gene, partial cds
Length = 2839
Score = 157 bits (397), Expect = 1e-35
Identities = 242/988 (24%), Positives = 402/988 (40%), Gaps = 72/988 (7%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S + R + K D P+ E
Sbjct: 17 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPVLAKSQQSRWAESKGTCNDRQTPNTEK 196
Query: 350 VEMCEPMDDSLL--EKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXX 407
+ ++ LL E +KP P +V LN SIQKVNEWF
Sbjct: 197 KVV---LNTDLLYGRNELNKQKPACSDSPR--DSQDVPWITLNSSIQKVNEWFSRSDEML 361
Query: 408 XXXXXQNDHAEA-TDASGEGDI-SLSDKDSCISEKTNPIVDSVEFAVI-ERNKRWTKQTT 464
Q+ +E+ T +G ++ + +D SEK + + A+I ER + +K
Sbjct: 362 TSDDSQDRRSESNTGVAGAAEVPNEADGHLGSSEKIDLMASDPHGALIRERERGHSKPAE 541
Query: 465 YSIEDKIFGKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSA 522
+IEDKIFGKTY R N S ++ D IL A+ E +E L N
Sbjct: 542 SNIEDKIFGKTYRRKASLPNLSHVIEDLILGASAVEPQITQERPLTNKLKRKRRGTSG-- 715
Query: 523 CILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKE--------KCDENSAVKENPLLEKRK 574
L PEDFIK+ D + P+ + E+ K EN N EK
Sbjct: 716 --LDPEDFIKRADSAVVPKTPEKTIEGTDETEQNGQGMNITSKGHENETKSGNVQKEKNV 889
Query: 575 GSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAI 634
T + KE + + AE +S S+ +LELN K+ KN + STR A+
Sbjct: 890 NPTASLGKEPAFRAR--AEPISSSISNMELELNIHGSKAPKNRLRR----KSSTRQIHAL 1051
Query: 635 HLV-DRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXX-----XXXITKETG 688
LV +RNP E I+S S+EE K + K
Sbjct: 1052 ELVVNRNPSPPSHTELQIDSCSSSEEMKKRNSDQVPVRHSKKLHLRGDKEPTTGAKKNNR 1231
Query: 689 KMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANG 748
+ + SD+ PE ++ NV V + C + K Q+ +S + N
Sbjct: 1232 PHEQVNKRPISDAFPELNL----TNVPVSITNCSNSNKLQESVSPNLQREEN-----LGT 1384
Query: 749 IQISSKNSDD---MAKNRSFFNPTFSCQLSNFNS-PSSKAGSQ------EGEMLGKLFLP 798
IQ+S+ N D M F S + ++ + P + G+Q E + LGK
Sbjct: 1385 IQVSNSNKDPKDVMLSGGKGFQIERSVENTSISLVPDTDYGTQDSISLLETDTLGKA--K 1558
Query: 799 QSPSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAE 858
+P++ V A+ ++ S C+ KG RN DF+ + + E ++E E
Sbjct: 1559 TTPNQHVRLCAATENPKELSLGCS-----KGV--RNDTGDFKDPLAHDVNHTQEASIEVE 1717
Query: 859 DSELDMQYLRNIFRSSKRQSFSLYPTPM---KACTTDDVASEKLNTSCPDQVEERNSK-- 913
++ELD QYL+++F+ SKRQ+F+L+ P K CTT S+ L P E K
Sbjct: 1718 ENELDTQYLQSMFKVSKRQTFALFSNPANPEKECTTVHAHSKSLREQSPKVTHEGGQKDE 1897
Query: 914 -----YLKTENLQEEKTTAENL-----SSVCEKFETCESACVSPVSCFVSSAACVHTVE- 962
K ++ Q TT + L F C + V+ + +S H E
Sbjct: 1898 NQGKSESKVKHGQSVHTTVDFLVVGQKDKKPSDFAKCGAKGVT--GLYQTSQFRGHKTEF 2071
Query: 963 --------NQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLR 1014
+Q+ + + + + ++ +N + ++ + E+T+
Sbjct: 2072 INANKPGISQNPYVIPSLSPIRSSVKTICKKNLSEEKFEEPKMSPERTMGNE-------- 2227
Query: 1015 LSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQV-EKAEVVDDKGLMQHFQPS 1073
S + + S Q+N +E F+ + +E S +N+V V G +P
Sbjct: 2228 -SIIPNTESTVSQNNIQERTFKEGSSGSPNEV--GSSTNEVGSSINEVGSSGENVRAEPG 2398
Query: 1074 -------------PMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGL 1120
++ P +Q+ NC TE K +G E + Q V+
Sbjct: 2399 RNRGPKLSAMLRLGLMQPEVYKQSLPVSNCNHTEIK--------RQGENEGIFQAVNADF 2554
Query: 1121 SEFSVREALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGA 1180
S + + + E+ + SETPD LL +D+ +E+ +F ++ K+ SAVF K +
Sbjct: 2555 SPYLISDNPEQPMGSSHASQICSETPDDLL-NDDKIKENLNFAESDVKERSAVFSKSAQE 2731
Query: 1181 AWVKEVNDSVVSCKPRSEGIQRFRRRAQ 1208
K + S ++ + ++G QR+ R+ +
Sbjct: 2732 GEFKR-SPSPLAHRRLAQGHQRWARKLE 2812
>gb|AF284027.1|AF284027 Amblysomus hottentotus BRCA1 gene, partial cds
Length = 2773
Score = 156 bits (395), Expect = 2e-35
Identities = 228/958 (23%), Positives = 380/958 (38%), Gaps = 74/958 (7%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRL--DKIKEKDICVPSVED 349
+AS L+++ +S L + M+VE+ + +KN++ L S + R K D PS +
Sbjct: 17 HASSLQHENSSLLLTKDRMNVEKAEFCNKNKQSGLARSQQSRWAGSKAACNDKQTPSTQ- 193
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
E+ KE V K P E+ LN SI+KVNEWF
Sbjct: 194 TELYRSAGPMHRRKE--VNKLKSPWSESPGATQEIPWITLNSSIRKVNEWFSRSDGL--- 358
Query: 410 XXXQNDHAEATDASGEGDISLSDKD-----SCISEKTNPIVDSVEFAVIERNKR-WTKQT 463
H E ++++ E S SEK + + + A+I N+R +K
Sbjct: 359 ---DESHDEGSESNAEVACKFEFPKEVQGYSSSSEKMDLMANDPHDALICENERILSKPA 529
Query: 464 TYSIEDKIFGKTYERGRK-SNPSTILRDI-LPATKKEDAAAEEGCLNNSXXXXXXXXXXS 521
+IEDKIFGKTY R N S + +D+ + A E A+E L N
Sbjct: 530 VSNIEDKIFGKTYRRKTSLPNLSHVTKDLMIGAVATEAQMAQERPLTNKLKRKRRTSG-- 703
Query: 522 ACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVK-----------ENPLL 570
L PEDFIKK ++ + P+ I + E + ++N V+ ++ +
Sbjct: 704 ---LHPEDFIKKAGMKVVQKTPEKI-----NQETNQMEQNDQVRNIVDGGHENDTKSDYV 859
Query: 571 EKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKS-TKNACSTAKGCRHSTR 629
+K K + A+ + + AE +S S+ +LELN + K+ KN RH
Sbjct: 860 QKEKSANPAKSLAKESAFTTKAEPISSSISNMELELNMYNSKALRKNRLRRKSSSRH--- 1030
Query: 630 TRCAIH----LVDRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITK 685
IH +V+RNP E I+S+PS+EE ++ T+
Sbjct: 1031 ----IHTLDLVVNRNPSPPPYTELQIDSWPSSEEINE--------------TSSEQKPTR 1156
Query: 686 ETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLE 745
+ + ++KE + + +G + S N + + K+ ++ L N D
Sbjct: 1157 HSRNLHLMKEQETA-TGTKNS-----------NKPNEQISKRHATYTFSELNITNRTDFI 1300
Query: 746 AN-----------GIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGK 794
N + + ++ ++ ++ T + + + E
Sbjct: 1301 TNCPRSDNLQELVNPSLQGEEREEKSETMQVYDNTKEPEDQVLSGRRDLQMERSVESTSV 1480
Query: 795 LFLPQSPSKTVLH-----AASILTEEKRSWSCTVFSQDKGC---------CSRNVPKDFR 840
+P + T H A ++ E CT SQ K C RN + F+
Sbjct: 1481 SVIPDTDHGTQNHTSLPEAGTLGKAETAPNQCT--SQCKAIENPNQLIHGCPRNDTEGFK 1654
Query: 841 IGKSPMAKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDV------ 894
K+ E +E E+ ELD+QYL+N F+ SKR+SF+L+ P K C T
Sbjct: 1655 DLLKHEVKHNQETCIEMEEGELDIQYLQNTFKVSKRRSFALFSNPEKECATVSAHSRSFR 1834
Query: 895 -ASEKLNTSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVS 953
S K C ++ E + K K +++Q T+ +C+K + + S +
Sbjct: 1835 KQSPKATLECGEKEENQGHKESKVKHVQAVHTSV-GYPGLCQKEKPSDYTKGS-----IQ 1996
Query: 954 SAACVHTVE----NQDVSKVANHGNL------TTLLRICAARNEDGNRPQKGEQGSEKTL 1003
A+ +H N+ AN + T LL C N ++ + +L
Sbjct: 1997 GASRLHQSSQFSGNESEQITANENGISQSPDQTALLSKCKK-----NLSEERFEERAVSL 2161
Query: 1004 STGIGVESKLRLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFS----SESNQVEKAE 1059
+G E S ++S S +N E AF+ T ++ +E S SN+ +AE
Sbjct: 2162 EKAVGNE-----SIIQSTVSTVSHNNIRERAFKETSSSSTNEVGSSINEVGSSNENIQAE 2326
Query: 1060 VVDDKG-LMQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVST 1118
V ++G + + P +QN NC+ E IT++ G+ E +Q
Sbjct: 2327 VGRNRGPKLNAMLTLGFMQPEVYKQNLTLSNCKHPE---ITKQ-----GDNEERVQAADP 2482
Query: 1119 GLSEFSVREALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
G S + + LE + + SETPD LL D++ +E+ SF + + SAVF K
Sbjct: 2483 GFSPCLISDNLEPPMGSNHASQICSETPDDLL-DDDEIKENISFAESGINERSAVFSK 2653
>gb|AF284011.1|AF284011 Diceros bicornis BRCA1 gene, partial cds
Length = 2842
Score = 155 bits (392), Expect = 4e-35
Identities = 231/955 (24%), Positives = 382/955 (39%), Gaps = 71/955 (7%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S + R + KE D P+ E
Sbjct: 17 HASSLQHENSSVLLTKDRMNVEKAEFCNKSEQPGLAKSQQSRWAESKETCNDRQTPNSEK 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
++ D KE +KP P ++ N SIQKVNEWF
Sbjct: 197 -KLVLNADPLYGRKELNKQKPPCSDSPR--DSQDIPWITRNSSIQKVNEWFSRSDEILTS 367
Query: 410 XXXQNDHAEA-TDASGEGDISLS-DKDSCISEKTNPIVDSVEFAVIERNKR-WTKQTTYS 466
+ E+ T+ +G ++ D S SEK + A+I ++R +K +
Sbjct: 368 DDSHDGGPESNTEVAGAVEVQNEVDGYSGSSEKIGLMASDPPGALICESERVHSKPVENN 547
Query: 467 IEDKIFGKTYERGRKS-NPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACI 524
IEDKIFGKTY R N S I D I+ A+ E +E L N
Sbjct: 548 IEDKIFGKTYRRKASLLNLSHITEDLIIGASAIESQITQERPLTNKLKHKRRTTSG---- 715
Query: 525 LQPEDFIKKKDLEEADRCPQGIKSSLGDAEKE--------KCDENSAVKENPLLEKRKGS 576
L PEDFIKK DL + P+ I E+ EN + ++K K +
Sbjct: 716 LHPEDFIKKVDLAVVQKTPEKIIEGTDQIEQNGRVMSIANNGHENET--KGDYVQKEKNA 889
Query: 577 TLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL 636
E E+ ++ AE +S S+ +LELN K+ K K STR A+ L
Sbjct: 890 NPTESLEKESAFRTKAEPISSSISNLELELNIHSSKAPKKNRLRRKS---STRHIHALEL 1060
Query: 637 V-DRNPGSFDLAEPLINSYPSNEE-----PSKADCXXXXXXXXXXXXXXXXXITKETGKM 690
V RN + E ++S S+EE PS+ K
Sbjct: 1061 VVSRNLSPPNHTELQVDSCSSSEEMKKKSPSQVPVRHSRKLQLTEDKEPAAGAKKSNKPN 1240
Query: 691 RVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQ 750
I + SD+ PE + NV + C K Q+ ++ + +L A +
Sbjct: 1241 EQINKRLASDAFPELKL----TNVPGFFANCSSSNKLQEFVNPSLQREDIERNLGAIQVS 1408
Query: 751 ISSKNSDDMAKN--------RSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPS 802
S+K+ +D+ + RS + + S E + LGK +
Sbjct: 1409 NSTKDPEDLILSGGRGLQAERSVESTSISLVPDTDYGTQGSISLLEADTLGK-------A 1567
Query: 803 KTVLHAASILTEEKRSWSCTVFSQDKGC---CSRNVPKDFRIGKSPM---AKNASEFTME 856
KT ++R+ C K CS++ D K P+ + E ++E
Sbjct: 1568 KTA--------PDQRASLCAAIENPKELIHDCSKDTRNDTEGLKDPLRCEVNHTQETSIE 1723
Query: 857 AEDSELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDV-------ASEKLNTSCPDQ 906
E+SELD QYL+N F+ SKRQSF+L+ P K C S K+ C +
Sbjct: 1724 MEESELDTQYLQNTFKVSKRQSFALFSNSGNPEKDCAAVSAHTRSLRKPSPKVTLECGQK 1903
Query: 907 VEERNSKYLKTENLQEEKTTAENLSSVCE---------KFETCESACVSPVSCFVSSAAC 957
E + K K +++Q TT + VC+ K+ E + + S F +
Sbjct: 1904 EENQGKKESKVKHVQSVHTTVD-FPVVCQKDKKPGDHVKYSIKELSRLCQSSQFRGNETE 2080
Query: 958 VHTVENQDVSK----VANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKL 1013
+ T +++S+ + + + + ++ +N + ++ E+ L
Sbjct: 2081 LITANKRELSQNLCYIPSLSPIRSSVKTICKKNVSEEKLEEHSVSPERALG--------- 2233
Query: 1014 RLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVD 1062
S ++S S Q+N E F+ G ++++E S+ S + +AE+
Sbjct: 2234 NKSVIQSTVSTISQNNIRESTFKEVGSSSINEVDSSTNEVGSSINEVGSSGENIEAELGR 2413
Query: 1063 DKG-LMQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLS 1121
++G + ++ P +Q+ NC+ E K +G E V+Q V+ S
Sbjct: 2414 NRGPKLNAILRLGLMQPEVYKQSLPISNCKHPEIK--------RRGENEGVVQPVNADFS 2569
Query: 1122 EFSVREALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
+ + LE+ + SETPD LL +DN+ +E+ SF + K+ SA+F K
Sbjct: 2570 PCPISDNLEQPVGISCASQVCSETPDDLL-NDNEIKENISFTESGIKERSAIFSK 2731
>gb|AF284012.1|AF284012 Lama glama BRCA1 gene, partial cds
Length = 2833
Score = 154 bits (390), Expect = 6e-35
Identities = 244/942 (25%), Positives = 375/942 (38%), Gaps = 58/942 (6%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S + R + K+ D PS E
Sbjct: 17 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPVLARSQQSRWAESKDTCNDRQTPSTEK 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
++ D +E +KP P +V LN SIQKVNEWF
Sbjct: 197 -KVALNADRLYGSEELNKQKPACSDSPR--DSQDVPWITLNSSIQKVNEWFSRSDEMLPS 367
Query: 410 XXXQNDHAEA-TDASGEGDISLS-DKDSCISEKTNPIVDSVEFAV-IERNKRWTKQTTYS 466
E+ T+ +G ++ D S SEK + + A+ E K K +
Sbjct: 368 DDSHEVGPESNTEVAGAVEVPNEVDGYSGSSEKIDLMASDPHGALKCENEKVHAKPVGSN 547
Query: 467 IEDKIFGKTYERGRKSNPSTILRD---ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSAC 523
IEDKIFGKTY R + S P+ R IL A+ E +E N
Sbjct: 548 IEDKIFGKTYRR-KASLPNLTHRAEDLILGASVLEPQITQERPFTNKLKRKRRTLPG--- 715
Query: 524 ILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDEN--SAVKEN----PLLEKRKGST 577
L PEDFIKK DL + P+ I E+ N S EN ++K K +
Sbjct: 716 -LHPEDFIKKVDLAVVQKSPEKIIERTDQTEQNGHGMNITSNGHENETNDDYVQKEKNAN 892
Query: 578 LAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL- 636
E E+ +K AE +S S+ +LELN K+ KN + STR A+ L
Sbjct: 893 PTESLEKESAFKTKAEPISSSISNMELELNTHSSKAPKNRPRR----KSSTRQIHALELI 1060
Query: 637 VDRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEA 696
V RNP + E I S S+EE K TG + K
Sbjct: 1061 VSRNPSPPNHTELQIESCSSSEE-MKEKHSDQMPVRHRKKLQLTGDKEPTTGTKKSNKPH 1237
Query: 697 KNSDSGPEGSVFGVER--NVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSK 754
+ + G+ F N ++C K Q+ + + N IQ+S+
Sbjct: 1238 QQINKRLVGNTFPELNLTNTPGFFTKCSSSNKLQEFANPSLQREEN-----PGAIQVSNS 1402
Query: 755 NSD----------DMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKT 804
D + RS N + S E + LGK +P++
Sbjct: 1403 TKDPKVLILSGGRGLQIERSVENTSISLVPETDYDTQDSVSLLEADTLGK--AKTAPNQC 1576
Query: 805 VLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDM 864
V A+ ++ SC S+D +RN F+ + E +ME E+SELD
Sbjct: 1577 VSLCAATENPKELIHSC---SKD----TRNGTAGFKDPLGCDVNHTQEASMEVEESELDT 1735
Query: 865 QYLRNIFRSSKRQSFSLYPTP---MKACTTDDV-------ASEKLNTSCPDQVEERNSKY 914
QYL+N F+ SKRQ+F+L+ P K C T S K+ C + E +
Sbjct: 1736 QYLQNTFKVSKRQTFALFSNPGDSEKECATIYAHSGPLREQSPKITLECGQKEENQRKSK 1915
Query: 915 LKTENLQEEKTTAENLSSVCEKFETCESACVSPVS----CFVSSAACVHTVENQDVSKVA 970
+ +++Q TT N V +K + + A SP C+ S N+ +A
Sbjct: 1916 SEIKHMQAVHTTL-NFPVVGQKDKPSDYAKYSPKGISRLCWPSQLR-----GNESEFIIA 2077
Query: 971 N-HGNLTTLLRICA-ARNEDGNRPQKGEQGSEKTLSTGIGVESKL--RLSPVRSNRSQSD 1026
N HG L I + + N + + SE+ L + ++ S ++S S
Sbjct: 2078 NKHGILQNPYLITSLSPNRSSVKTMCKKNPSEEKLEKCVISPKRVMGNESTIQSIVSAMS 2257
Query: 1027 QSNTEEHAFQRTGLNAVSETYFS-----SESNQVEKAEVVDDKGLMQHFQPS-------P 1074
Q+N E F+ ++V+E S S N+V + L ++ P
Sbjct: 2258 QNNIRESTFKEVSSSSVNEVGSSTNEVGSSINEVGSSGENIQAELGRNMGPKLNAMLRLG 2437
Query: 1075 MLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLK 1134
+L P C+Q+ NC+ E K +G E + Q V+T S + + LE+ +
Sbjct: 2438 LLQPEVCKQSLPVSNCKQPEIK--------RQGENEGIFQAVNTDFSPCLISDNLEQPMG 2593
Query: 1135 GHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL D++ +E+ SF ++ K+ SAVF K
Sbjct: 2594 SSHASQVCSETPDDLL-YDDEIKENTSFAESDIKERSAVFSK 2716
>gb|AF284003.1|AF284003 Glaucomys volans BRCA1 gene, partial cds
Length = 2890
Score = 154 bits (388), Expect = 1e-34
Identities = 242/997 (24%), Positives = 387/997 (38%), Gaps = 113/997 (11%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S + R K KE D +PS E
Sbjct: 17 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQQSRWAKSKETCNDRQIPSSEK 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
++ D +KEP +K P + +V LN SI+KVNEWF
Sbjct: 197 -KVDLNADPQYEKKEPSKQK--HPCSENSRDTQDVPWITLNSSIRKVNEWFSRSDEMLTS 367
Query: 410 XXXQNDHAEATDASGEGDISLS---DKDSCISEKTNPIVDSVEFAVIERNKR-WTKQTTY 465
+ +E+ +A G + + D S SEK + + A+I + KR +K
Sbjct: 368 DDSDDGGSES-NAEIAGILEIPNEVDGFSGSSEKIDLLATDPHNALISKCKRVCSKAVKS 544
Query: 466 SIEDKIFGKTYERGRK-SNPSTILRDIL-----------------PATKKEDAAAEEGCL 507
+IEDKIFGKTY+R N S I +++ P ++ A +
Sbjct: 545 NIEDKIFGKTYQRKASLPNLSHITENLIIGAFAREPQITQELAREPQITQQLAREPQITQ 724
Query: 508 NNSXXXXXXXXXXSACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDEN--SAVK 565
+ L PEDFIKK DL + P+ I E N ++ +
Sbjct: 725 ERPLTNKLRRKRRTTSCLHPEDFIKKTDLAIVQKTPEKINQGTDQMEHNDQVMNITNSGQ 904
Query: 566 ENPL----LEKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTA 621
EN ++K K + E E+ ++ AE +S S+ +LELN + K+ K
Sbjct: 905 ENETKVDYVQKEKNANPVESLEKESAFRTKAEPISSSISNMELELNIHNSKAPKK----- 1069
Query: 622 KGCRHSTRTRCAIHLVDRNPGSFDLAEPLIN---SYPSNEEPSKADCXXXXXXXXXXXXX 678
R + TR IH++ EP++N S P + E C
Sbjct: 1070 NRLRRKSSTRY-IHVL----------EPVVNRNTSPPHHTELQIDSCTSS---------- 1186
Query: 679 XXXXITKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLAD 738
+E K +S G + + D+RK ++
Sbjct: 1187 ---------------EEIKTRNSNQMSVRHGKKLQFMEDAEPATDVRKSNKPNEQVNKRH 1321
Query: 739 RNGA--DLEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEG-EMLGKL 795
N A L+ GI N +K F NP K G++E E++
Sbjct: 1322 TNDAFPGLKLTGISGIFTNCSSSSKVEEFINPNLQ-----------KEGTEENIEIIQVS 1468
Query: 796 FLPQSPSKTVLHAASILTEEKRSWSCTV---------------------FSQDKGCCSRN 834
Q P TVL +L E+ S ++ F + + +++
Sbjct: 1469 DNTQDPKDTVLSGERVLQTERSVESTSISLVPDTDYGTQDSISLLEANTFGKARTASNQH 1648
Query: 835 V--------PKDFRIGKSPMAKN---------------ASEFTMEAEDSELDMQYLRNIF 871
V PK+F G S KN E +E E+SELD Q L N F
Sbjct: 1649 VTQYVAIENPKEFVHGHSKDTKNDPEGFKDSLRCEVNHIQETNVEMEESELDTQSLENTF 1828
Query: 872 RSSKRQSFSLYPTP---MKACTTDDVASEKLNTSCPD---QVEERNSKYLKTENLQEEKT 925
+ SKRQSF+L+ P K C + +S+ L PD + E+ + K E+ +
Sbjct: 1829 QVSKRQSFALFSNPGNLEKECAANYTSSKSLRKQSPDMTLECEQEEENWGKKES-KIRHV 2005
Query: 926 TAENLSSVCEKFETCESACVS--------PVSCFVSSAACVHTVENQDVSKVANH----- 972
A N + VC+K + + A S P F + + T + +S+ H
Sbjct: 2006 QAINATMVCQKSKPDDDAQCSVTEVSRIFPSFQFRDNLTKLITADKHGISQNPYHMPSIS 2185
Query: 973 ---GNLTTLLR--ICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQ 1027
++ T R + + E +R K G ++ + + + S+ + + S
Sbjct: 2186 PSRSSVNTKCRRNLSEEKFEKDSRSPKEAVGYKRIIQSTVSTISQNNIRQSAFKEANSGS 2365
Query: 1028 SNTEEHAFQRTGLNAVSETYFSSESNQVE-------KAEVVDDKGLMQHFQPSPMLCPTA 1080
N + G ++++E S E+ Q E K V GLMQ P A
Sbjct: 2366 INEVGSSTNEVG-SSINEVGSSGENIQAELGRNRGPKLNAVLRLGLMQ---------PEA 2515
Query: 1081 CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT 1140
C+QN NC+ E K + E+ V+Q V+ S + + LE+ + G+S T
Sbjct: 2516 CKQNLLS-NCKYPEIK---------RQGEDEVVQVVNADFSPCLISDDLEQPM-GNSHVT 2662
Query: 1141 DL-SETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
+ SETPD LL D++ +E+ SF K+ SAVF K
Sbjct: 2663 QVCSETPDDLL-DDDEIQENTSFAEGGIKERSAVFSK 2770
>gb|AF284021.1|AF284021 Loxodonta africana BRCA1 gene, partial cds
Length = 2793
Score = 152 bits (383), Expect = 4e-34
Identities = 229/934 (24%), Positives = 384/934 (40%), Gaps = 50/934 (5%)
Frame = +2
Query: 293 NASPLKN-DTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L++ ++S L + M+VE+ + +K+++ L S + R + KE D PS E
Sbjct: 17 HASSLQHKNSSLLLTKDRMNVEKAEFCNKSKQPGLARSQQSRWAESKETCNDRQTPSTE- 193
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ + D L E++ V K P+ + ++ LN SIQKVNEWF
Sbjct: 194 -KKVDVNADPLYERKE-VNKQKPPRSENLRDTQDIPWITLNSSIQKVNEWFFRSDGLDVL 367
Query: 410 XXXQNDHAEATDASGEGDISL-SDKDSCISEKTNPIVDSVEFAVIERNKRW-TKQTTYSI 467
ND + A G + + ++ S SEK + + + A+I ++R +K +I
Sbjct: 368 ----NDEGPESSAEVAGALEVPNEVHSNSSEKIDLMASDLHGALICESERVPSKPAESNI 535
Query: 468 EDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACIL 525
EDKIFGKTY R S+ S I D I+ A E A E N L
Sbjct: 536 EDKIFGKTYRRKAGMSHLSHITEDLIMGAIASEPQIAREHPFTNKLKRKRRTSG-----L 700
Query: 526 QPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSA--VKEN----PLLEKRKGSTLA 579
PEDFIKK DL + P+ I E+ N A +EN ++K K +
Sbjct: 701 HPEDFIKKVDLAVVQKIPEKINQETDHVEQNGQVMNIANGGRENETKGDYVQKEKNAIPT 880
Query: 580 EFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VD 638
E + ++ AE +S S+ +LELN + K+ K K STR A+ L V+
Sbjct: 881 ESLAKESAFRTKAEPISSSISNMELELNMHNSKAPKKNRLRRKS---STRHIHALELVVN 1051
Query: 639 RNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMRVI 693
RNP E I+S+ S+EE K K I
Sbjct: 1052 RNPSPPTHTELQIDSWSSSEETKKKSSEQKPIRHNRNLQLMKNQETATGAKKSNKPKEQI 1231
Query: 694 KEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISS 753
+ +DS PE + + ++C Q+ ++ ++ +LE + +
Sbjct: 1232 SKRHGADSYPELHLTTTAGFI----TKCSSSDNLQEFVNPSLQGEKTEENLETIQVSNIT 1399
Query: 754 KNSDDMAKNRS-FFNPTFSCQLSNFN-SPSSKAGSQEGEMLGKLFLP----QSPSKTVLH 807
K D+ N S + +N + P + G+Q+ L P +P++
Sbjct: 1400 KEPKDLVLNGGRDLQTKKSIESTNISVIPDTVYGTQDSVSLLGADTPGKAKTAPNRCASQ 1579
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
+I + + SC +D +RN + F+ A + E +E E+SELD QYL
Sbjct: 1580 CTAIENPSELTNSC---PKD----TRNDTEGFKDLLRCEASHIQETCIEIEESELDTQYL 1738
Query: 868 RNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCP-----------------DQVEER 910
++ F+ SKRQSF+L+ P K C T S+ L P +++
Sbjct: 1739 QSTFKVSKRQSFALFSNPEKKCATICAHSKSLRKQSPKVTLVCGEKEENQGNREPKIKHE 1918
Query: 911 NSKYLKT---ENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQDVS 967
+ ++ T E Q+EK + S+ C+S S F S + + T + +S
Sbjct: 1919 QAVHMPTGYPEACQKEKPSDYTKYSIKGVSGLCQS------SQFRGSESELITADGHGIS 2080
Query: 968 KVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQ 1027
+ N + +L ++ E+ E T+S + ++ + ++S S Q
Sbjct: 2081 Q--NPDQIPSLSPTRSSVKTKCKTNLLEERFEEHTISLERAMRNE---NVIQSTVSTVSQ 2245
Query: 1028 SNTEEHAFQRTGLNAVSETYFS----SESNQVEKAEVVDDKG-LMQHFQPSPMLCPTACQ 1082
+N E A + ++++E S S + +AE+ +G + ++ P +
Sbjct: 2246 NNIRESASKEASSSSINEVCSSINEVGSSGENIQAEISRKRGPKLNAVLRLGLMQPEVYK 2425
Query: 1083 QNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDL 1142
Q+ +C+ K +G E V+Q V+T S + + LE+ +
Sbjct: 2426 QSLPISDCKHPGIK--------TQGENEGVVQAVNTDFSPCLISDNLEQPVGTSRASQVC 2581
Query: 1143 SETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL D++ +E+ SF K+ S VF+K
Sbjct: 2582 SETPDDLL-DDDEIKENISFAENGIKERS-VFIK 2677
>gb|AF284010.1|AF284010 Equus caballus BRCA1 gene, partial cds
Length = 2827
Score = 151 bits (382), Expect = 5e-34
Identities = 226/939 (24%), Positives = 380/939 (40%), Gaps = 55/939 (5%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S + R + KE D P+ E+
Sbjct: 17 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLAKSQQSRRAESKETCNDRQAPNSEE 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ D L +E + K P+ +V LN SIQKVNEWF
Sbjct: 197 KLVLNA--DPLYGREE-LNKQKPPRSDSPRDSQDVPWITLNSSIQKVNEWFSRSEEMLTS 367
Query: 410 XXXQNDHAEA-TDASGEGDISLSDKD-SCISEKTNPIVDSVEFAVI-ERNKRWTKQTTYS 466
+ E+ T+ +G ++ + S SEK + + A+I E + +K +
Sbjct: 368 DDSCDGGPESNTEVAGAVEVPNEVRGYSGSSEKIDLMAGDPSSALICESERVRSKPVENN 547
Query: 467 IEDKIFGKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACI 524
IED+IFGKTY R N S I D I+ A+ E +E L N
Sbjct: 548 IEDRIFGKTYRRKASFPNLSHITEDLIIGASAIEPQITQERPLTNRVKHKRRTSSG---- 715
Query: 525 LQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVK------ENPLLEKRKGSTL 578
L PEDFIKK DL + P+ I E+ N + ++ K + L
Sbjct: 716 LHPEDFIKKVDLAVVQKTPEKIIEGTDQIEQNSHVMNITPNGHGNETKGDYVQNEKNAYL 895
Query: 579 AEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-V 637
E E ++ AE +S + +LELN K+ K K C T+ A+ L V
Sbjct: 896 TESLETESAFRTKAEPISSSIGNLELELNIHSSKAPKKNRLRRKSC---TKQIHALELVV 1066
Query: 638 DRNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMRV 692
+NP + E I+S S+EE K + K
Sbjct: 1067 SKNPSPPNHTELQIDSCSSSEEMKKKNSDQMPVRHSKKLQLMEDKEPATGAKKSNKPNEQ 1246
Query: 693 IKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQIS 752
I + SD+ PE + N+ + C K + ++ + +L AN + S
Sbjct: 1247 INKRLASDAFPELKL----TNIPGFFTNCSSSNKLHEFVNPSLQREEIEQNLGANRLSNS 1414
Query: 753 SKNSDDM-AKNRSFFNPTFSCQLSNFN-SPSSKAGSQ------EGEMLGKLFLPQSPSKT 804
+K+ D+ S + S + P + G+Q E + LGK +P++
Sbjct: 1415 AKDPKDLILSGGKCLQAERSVESSGISLVPDTDYGTQDSISLLEADTLGK--AKTAPNQC 1588
Query: 805 VLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAK---NASEFTMEAEDSE 861
A+I ++ + CS++ D + K P+ + + E ++E E+SE
Sbjct: 1589 ANLCAAIENPKELTHD----------CSKDTRNDTQGVKDPLRREVNHTQETSIEMEESE 1738
Query: 862 LDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDV-------ASEKLNTSCPDQVEERN 911
D QYL+N+F+ SKRQSF+L+ +P K C T S K+ C + +
Sbjct: 1739 FDTQYLQNMFKVSKRQSFALFSNPGSPEKKCATVSAHSRSLRKQSPKVTLKCGQKEGKEG 1918
Query: 912 SKYLKTENLQEEKTTAENLSSVCE---------KFETCESACVSPVSCFVSSAACVHTVE 962
K K +N+Q TT +C+ K T E++ + S F + + T
Sbjct: 1919 KKESKIKNVQSVHTTV-GFPVICQKDKKPGDYVKCSTKEASRLCQSSQFRGNETELITAN 2095
Query: 963 NQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNR 1022
+S+ + + +R N P+ + + +G E S V+S
Sbjct: 2096 KHGISQNPYYIPSLSPIRSSVKTVCQKNLPEGKLEEQSLSPERAMGNE-----SIVQSTV 2260
Query: 1023 SQSDQSNTEEHAFQRTGLNAVSETYFS----SESNQVEKAEVVDDKG-LMQHFQPSPMLC 1077
S Q+N E + ++++E S S + +AE+ ++G + ++
Sbjct: 2261 STISQNNIRESTLKEVSSSSINEVGSSINEVGSSGEHIQAELGRNRGPKLNAILRLGLMQ 2440
Query: 1078 PTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHS 1137
P +Q+ NC+ E K + E+ V+Q V+ S + + LE+ +
Sbjct: 2441 PEVYKQSLPISNCKHLEIK---------RQGEKEVVQAVNADFSPCLISDNLEQPMGSSC 2593
Query: 1138 DFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL +D++ +E+ SF + K+ SAVF K
Sbjct: 2594 ASQVCSETPDDLL-NDDEIKENISFAESGVKERSAVFSK 2707
>gb|AF284029.1|AF284029 Rhynchocyon sp. BRCA1 gene, partial cds
Length = 2793
Score = 150 bits (380), Expect = 9e-34
Identities = 234/951 (24%), Positives = 376/951 (38%), Gaps = 68/951 (7%)
Frame = +2
Query: 294 ASPLKNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDIC----VPSVED 349
+S L ++ L + + MDVE+ + +K+++ L S + R + KE C PS+E
Sbjct: 23 SSLLHENSRLLLSKDRMDVEKAEFCNKSKQPGLARSQQSRWTENKET--CNHRQTPSIEK 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
++ D S KE +K + P ++ LN S+QKVN WF
Sbjct: 197 -KLDMNADPSYGRKEVNKQKYECSESPQ--DTQDIPWMTLNSSVQKVNAWFSRSDGLDDA 367
Query: 410 XXXQNDHAEATDASGEGDISLSDKDSCISEKTNPIVDSVEFA-VIERNKRWTKQTTYSIE 468
++ A + E + S SEK + + + A V E + ++K ++E
Sbjct: 368 PDVGSESNTAITGALEVSKEVHGYSSS-SEKVHTMTGDPQGASVCESERVFSKPAENNVE 544
Query: 469 DKIFGKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQ 526
DKIFGKTY R N + I +D I+ A A+E L N L+
Sbjct: 545 DKIFGKTYRRKSSLPNLNHITQDLIVGAVATGPQTAQEHPLINKLKRKRRISG-----LR 709
Query: 527 PEDFIKKKDL------EEADRCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTLAE 580
PEDFIKK DL E+ ++ + SS+ E + V +K K + AE
Sbjct: 710 PEDFIKKVDLTSQKTPEKRNQTIYQVDSSIAGGGHEHETKGDCV------QKEKNVSPAE 871
Query: 581 FKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLV-DR 639
+ ++ E +S S +LELN + K K ST+ CA+ LV DR
Sbjct: 872 SLTKASAFRTKDEPISSSVSSMELELNMYSSIAPKKNRLRRKS---STKRICALELVVDR 1042
Query: 640 NPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNS 699
NP S AE I+S+PS+EE + C E G + +
Sbjct: 1043 NPTSPTHAELEIDSWPSSEE-RREKCSEFNSVRHSRTFQLMKGQETEIGDQKNNDKQNEQ 1219
Query: 700 DSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDD- 758
S + +RN+ + C + Q+ ++ G ++ IQ+ + D
Sbjct: 1220 ISKKHATDTSPKRNITGFITNCSNTDNLQEFVNPRF----EGEEIAVGPIQVLNSTKDPG 1387
Query: 759 ---MAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKTVL-----HAAS 810
++K R + S P + G Q L + + +T L H A+
Sbjct: 1388 TQVLSKERGLHTGNYVESTSISVIPDTDDGIQNSTSLLEAGTLEKAEETALTQCASHCAT 1567
Query: 811 ILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYLRNI 870
IL F +D + V + + + + +E EDSELD QYL+N
Sbjct: 1568 ILNPNTHVHG---FPKDPANDTEGVKDLLKCNPNHL----QDTCIEMEDSELDTQYLQNT 1726
Query: 871 FRSSKRQSFSLYPTPMKACTT---DDVASEKLNTS----CPDQVEERNSKYLKTENLQ-- 921
F+ SKRQSF+L+P P K CTT S+K N S C ++ E + ++ K +++Q
Sbjct: 1727 FKVSKRQSFTLFPNPEKECTTVCAHSRLSKKQNPSVTLECREKKENQGNEESKMKHVQVV 1906
Query: 922 ------------------EEKTTAENLSSVCEK--FETCESACVSPVSCFVSSAACVHTV 961
K + + +S +C+ F + ES ++ C +S +
Sbjct: 1907 HTSVHYPGVCEEEKIPDDHTKVSIKGISRLCQSSPFRSNESERITENECKMSHS------ 2068
Query: 962 ENQDVSKVANHGNLTTLLRICAARNED----GNRPQKGEQGSEKTLSTGIGV-ESKLRLS 1016
NQ S ++ T + E+ P++ + ST V ++ LR S
Sbjct: 2069 PNQTPSFSPTKPSVRTKYKQFYLSEEELEEHALSPERAMENESFIHSTVNAVSQNNLRGS 2248
Query: 1017 PVRSNRSQSDQ---SNTEEHAFQRTGLNAVSETYFSSESNQVE-------KAEVVDDKGL 1066
+ S S S+T E + ++++E S E+ Q E + V GL
Sbjct: 2249 VFKEGSSSSINEAGSSTNEVS------SSINEVCSSDENIQAELDRNRRPELNAVLRLGL 2410
Query: 1067 MQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVR 1126
MQ P Q + NCE E G E +IQ V+ + +
Sbjct: 2411 MQ---------PEVYQPSLPTNNCEYLEIS--------GPGKNEGIIQAVNPDFTPCLIS 2539
Query: 1127 EALEESLKGHSDFTDL-SETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
+ LE+ G + + + SETPD LL +D E+ SF + K+ S VF K
Sbjct: 2540 DNLEQQPMGSNHASQICSETPDDLL-NDEKRNENISFAQISIKERSTVFSK 2689
>gb|AF283999.1|AF283999 Dasypus novemcinctus BRCA1 gene, partial cds
Length = 2785
Score = 149 bits (375), Expect = 3e-33
Identities = 233/932 (25%), Positives = 377/932 (40%), Gaps = 55/932 (5%)
Frame = +2
Query: 300 DTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVE---DVEMCE 354
++S L + M+VE+ + +K+++ L + R + KE D PS+E DV+ +
Sbjct: 41 NSSLLLTKDRMNVEKAEFCNKSKQPGLARRQQSRWAESKETCNDRQTPSIEKKVDVD-AD 217
Query: 355 PM--DDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXX 412
P+ L +++PP + H T ++ LN SIQKVNEWF
Sbjct: 218 PLYGRKELNKQKPPCSES------HRDT-QDIPWIMLNSSIQKVNEWFSRGDDILTSDDS 376
Query: 413 QNDHAEATDASGEGDISLS---DKDSCISEKTNPIV----DSVEFAVIERNKRWTKQTTY 465
+D +A G + +S D+ S SEK + + D+++FA + K
Sbjct: 377 -HDRGSELNAEVAGALKVSKEVDEYSSFSEKIDLMAINPHDTLQFA---SERVQLKPAES 544
Query: 466 SIEDKIFGKTYERGRK-SNPSTILRDI-LPATKKEDAAAEEGCLNNSXXXXXXXXXXSAC 523
+I+DKIFGKTY R N S I R++ + A E +E L N +A
Sbjct: 545 NIKDKIFGKTYHRKASLPNLSHITRNLFIGAIAAEPKITQEHSLQNKIKRKRR----TAS 712
Query: 524 ILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVK------ENPLLEKRKGST 577
L+PED KK DL + P+ I E+ N A + ++K K +
Sbjct: 713 GLRPEDLSKKVDLTVVQKTPEKINQGTDQMEQNDPVMNIANSGHENETKGDCVQKEKNAN 892
Query: 578 LAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLV 637
E + ++ E +S S+ +LELN + K++K STR A+ LV
Sbjct: 893 PTESLGKESAFRTKGEPISSSISNMELELNILNSKASKKNRPKRMS---STRHIHALELV 1063
Query: 638 -DRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKE----TGKMRV 692
RNP + E I+S S EE K + +TKE TG +
Sbjct: 1064 GSRNPSPPNHTELQIDSCSSIEEIEKIN-----SNQKPIRHNRMLQLTKEKETTTGAKKN 1228
Query: 693 IKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQIS 752
K + F +NV +C K Q S SL +LE + S
Sbjct: 1229 NKPNEQISERHASDAFLELKNVTDFLPKCSSSDKLQKFNS--SLQGEVAENLETIQVSDS 1402
Query: 753 SKNSDDMAKNRSFFNPTFSCQLSNFNS--PSSKAGSQ------EGEMLGKLFLPQSPSKT 804
+++ +D+ + T S S P + G+Q E + LGK + ++
Sbjct: 1403 TRDPEDLVVSGEKCLQTERSAESTGISVVPDTDYGTQDSISLLEADTLGKA--KTALNQH 1576
Query: 805 VLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDM 864
V +I + S C S+D +RN +DF+ + +E E+SELD
Sbjct: 1577 VSQYVAIRNATELSHGC---SKD----TRNDTEDFKDSLRHEVNHTQGTNVEIEESELDT 1735
Query: 865 QYLRNIFRSSKRQSFSLYPTPMKACTTD-------DVASEKLNTSCPDQVEERNSKYLKT 917
QYL+N F+ SKRQSF+L+ P C T S K+ C + E + K K
Sbjct: 1736 QYLQNTFKISKRQSFALFSNPENECATVCAHSRFLGKQSPKVTFECRHKEENQGKKESKI 1915
Query: 918 ENLQEEKTTAENLSSVCEKFETCESA--CVSPVSCFVSSAAC----VHTVENQDVSKVAN 971
+++Q TTA VC+K + + A + VS S+ + + + N
Sbjct: 1916 KHVQVIHTTA-GFPIVCQKDKPGDYAKGSIQGVSRLCQSSQARGNESELINSNEHEISQN 2092
Query: 972 HGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSNTE 1031
+ +L + ++ E+ E T+S + + + ++S S SN
Sbjct: 2093 PDQMPSLSHMKSSVKTKCKENLSEEKFEELTVSL---ERTMVNENIIQSTVSTISHSNIR 2263
Query: 1032 EHAFQRTGLNAVSETYFSSESNQVE-------KAEVVDDKGLMQHFQPSPMLCPTACQQN 1084
E+ F+ ++++E S E+ Q E K + GLMQ P +Q+
Sbjct: 2264 ENTFKEASSSSINEVGSSDENIQAEVGRNRAPKLNAMLRLGLMQ---------PEVYKQS 2416
Query: 1085 PAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDLSE 1144
NC+ E K +G E I+ V S + + L+ + SE
Sbjct: 2417 LPITNCKYPEIK--------SQGENEEAIRAVDIDFSPCLISDNLQLPMGNSCASQICSE 2572
Query: 1145 TPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
TPD LL D++ +E+ F ++ K+ SA+F K
Sbjct: 2573 TPDDLL-DDDEIKENNCFAESDIKERSAIFSK 2665
>gb|AF203752.1|AF203752 Hipposideros commersoni Brca1 (Brca1) gene, partial cds
Length = 2851
Score = 148 bits (373), Expect = 6e-33
Identities = 244/975 (25%), Positives = 379/975 (38%), Gaps = 64/975 (6%)
Frame = +3
Query: 301 TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED--VEMCEPM 356
+S L + M+VE+ + +K+++ L S + R + KE D PS E+ V +P+
Sbjct: 66 SSLLLTEDRMNVEKAEFCNKSKQPGLARSQQSRWAESKETCNDRQTPSTEENVVLNTDPL 245
Query: 357 DDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQNDH 416
+ KE +KP P + T+ N SIQKVNEWF
Sbjct: 246 NG---RKELNKQKPPCSDSPRDSQVVAWITQ--NSSIQKVNEWFSRRDEILTSHSSCYGR 410
Query: 417 AEA-TDASGEGDISLS-DKDSCISEKTNPIVDSVEFAVI-ERNKRWTKQTTYSIEDKIFG 473
AE+ T+ SG ++ L D S +EK + AVI E + +K +IEDKIFG
Sbjct: 411 AESNTEVSGAVEVPLEVDGFSGSTEKITLMTSDPHDAVICESGRVHSKPLESTIEDKIFG 590
Query: 474 KTYERGRKSNPS---TILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDF 530
KTY R + S P+ T I+ A+ E +E L N L PEDF
Sbjct: 591 KTYRR-KASLPNFSHTTENIIIGASAVEPQITQECPLTNKLRRKRRTTSG----LHPEDF 755
Query: 531 IKKKDLEEADRCPQGIKSSLGDAEKE----KCDENSAVKE--NPLLEKRKGSTLAEFKER 584
IKK DL + P+ I E+ +N E ++K + E E+
Sbjct: 756 IKKVDLTVVQKTPEKIIERTHQTEQNGHVMNITDNGHGNETKGDYVQKEDNANPTESLEK 935
Query: 585 GLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDRNPGS 643
++ AE +S S +LELN K+ K K STR A+ L V NP
Sbjct: 936 ESAFRTTAEPISSSISHMELELNIHSSKAPKKNRLRRKS---STRPIHALELVVSGNPRP 1106
Query: 644 FDLAEPLINSYPSNEEPSK-----ADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKN 698
E I+S S+EE K + K I +
Sbjct: 1107 PSQTELQIDSCSSSEEVKKKISDQVPVTHSKTLELIEDQEPANGVKKRNKPNEQINKRLT 1286
Query: 699 SDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDD 758
S++ PE ++ + +L +S K Q+ ++ + L + S+K D
Sbjct: 1287 SNAFPELNLTNIP-GILNRSSS----NKLQEFVNPSLQREEIEESLGTIQVSNSTKGLKD 1451
Query: 759 MAKN--RSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKTVL----HAASIL 812
+ N R S P + GSQ+ L P +P K H
Sbjct: 1452 LISNGGRGLQTGQSMESTSILLVPDTDYGSQDSM---SLLEPDTPGKAKTAPNQHVGVCT 1622
Query: 813 TEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYLRNIFR 872
E S D +RN + F+ + E ++E E+SELD QYL+ F+
Sbjct: 1623 AVENPEELIHGGSND----TRNDTESFKDSLRHEVNHGQETSIEMEESELDTQYLQETFK 1790
Query: 873 SSKRQSFSLYPTP---MKACTTDD-----VASEKLNTSCPDQVEERNSKYLKTENLQEEK 924
SKRQSF+L+ P K C T S K+ C + E + K K + +Q
Sbjct: 1791 VSKRQSFALFSNPRNQRKECATIQSRSLRKQSAKVTLECGQKEENQGKKDSKIKLVQAVH 1970
Query: 925 TTAENLSSVCE---------KFETCESACVSPVSCFVSSAACVHTVENQDVSKVANHGNL 975
TTA VCE K+ T + + S F S+ + +S+ N N+
Sbjct: 1971 TTA-GYPVVCEKDENPGDYAKYSTKGVSRLCQSSLFRSNETELTIANKHGISQ--NPHNI 2141
Query: 976 -------TTLLRICAARNEDGNRPQ-----KGEQGSEKTLSTGIGVESKLRLSPVRSNRS 1023
+++ +C + N + + G+E + + + S+ + S
Sbjct: 2142 PHISPIRSSVKTVCKKNLSEENLEEYPVSPERAMGNESIIQSTVSTISQNNIRESTFKES 2321
Query: 1024 QSDQSNTEEHAFQRTGLNAVSETYFSSESNQVE-------KAEVVDDKGLMQHFQPSPML 1076
S + + G ++++E S E+ Q E K V GL+Q
Sbjct: 2322 SSSNXYEADSSTNEVG-SSINEVGSSGENIQAELGRNRGPKLNAVLGLGLVQ-------- 2474
Query: 1077 CPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGH 1136
P +Q+ NC+ E K +G E ++Q VS S + + LE+
Sbjct: 2475 -PEVYRQSLPVSNCQHPEIK--------RQGENEGIVQAVSADFSPCQISDNLEQPTGSS 2627
Query: 1137 SDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPR 1196
ETPD LL +DN+ +E+ SF ++ K+ SAVF K + + S V+
Sbjct: 2628 HASQVCPETPDDLL-NDNEIKENDSFAESDIKERSAVFSKSVQKGEFRR-SPSPVAHTRL 2801
Query: 1197 SEGIQRFRRRAQKLQ 1211
++G Q RRA+KL+
Sbjct: 2802 AQGHQ---RRARKLE 2837
>emb|AL590996.12|AL590996 Mouse DNA sequence from clone RP23-328K2 on chromosome 11, complete
sequence [Mus musculus]
Length = 139242
Score = 144 bits (364), Expect = 7e-32
Identities = 273/1115 (24%), Positives = 435/1115 (38%), Gaps = 75/1115 (6%)
Frame = -1
Query: 293 NASPLKNDTSFLKNAEE-MDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+ +TS L E+ M+ E+ + +K+++ + S + R K D VPS
Sbjct: 105219 HASSLQPETSSLLLIEDRMNAEKAEFCNKSKQPGIAVSQQSRWAASKGTCNDRQVPSTG- 105043
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTK----GLNQSIQKVNEWFXXX-- 403
E P DSL ++E K P+ CP + +T LN S+QKVNEWF
Sbjct: 105042 -EKVGPNADSLSDRE----KWTHPQ-SLCPENSGATTDVPWITLNSSVQKVNEWFSRTGE 104881
Query: 404 --XXXXXXXXXQNDHAEAT---DASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKR 458
+AEA + S E D S S KT+ + ++ ++ R
Sbjct: 104880 MLTSDSASARRHESNAEAAVVLEVSNEVDGGFSS-----SRKTDLVTPDPHHTLMCKSGR 104716
Query: 459 -WTKQTTYSIEDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXX 517
++K +I DKIFGK+Y+R + +I+ E +E N
Sbjct: 104715 DFSKPVEDNISDKIFGKSYQRKGSRPHLNHVTEIIGTFITEPQITQEQPFTNKLKRKRST 104536
Query: 518 XXXSACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEK--------CDENSAVKENPL 569
LQPEDFIKK D R P I E + C EN N
Sbjct: 104535 S------LQPEDFIKKADSAGVQRTPDNINQGTDLMEPNEQAVSTTSNCQENKIAGSN-- 104380
Query: 570 LEKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTR 629
L+K K + E + A+ +S SD ++ELN K+ K R +
Sbjct: 104379 LQKEKSAHPTESLRKEPASTAGAKSISNSVSDLEVELNVHSSKAPKK-----NRLRRKSS 104215
Query: 630 TRCAIHL--VDRNPGSFDLAEPLINSYPSNEEPSK----ADCXXXXXXXXXXXXXXXXXI 683
RCA+ L + RNP AE I+S S+EE K
Sbjct: 104214 IRCALPLEPISRNPSPPTCAELQIDSCGSSEETKKNHSNQQPAGHLREPQLIEDTEPAAD 104035
Query: 684 TKETGKMRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGAD 743
K+ I++ + SD+ PE + N + C RK Q ++ R G +
Sbjct: 104034 AKKNEPNEHIRKRRASDAFPEEKLM----NKAGLLTSCSSPRKSQGPVN--PSPQRTGTE 103873
Query: 744 -LEANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPS 802
LE + S+K D PS K + E + +
Sbjct: 103872 QLETRQMSDSAKELGDRVLG---------------GEPSGKTTDRSEESTSVSLVSDTDY 103738
Query: 803 KTVLHAASILTEEKRSWSCTVFSQDKGCCSRNV----PKDFRIG-----------KSPM- 846
T ++ S+L ++ T +Q C ++ V PK+ G K P+
Sbjct: 103737 DT-QNSVSVLDAHTVRYARTGSAQ---CMTQFVASENPKELVHGSNNAGSGTEGLKPPLR 103570
Query: 847 -AKNASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLN-- 900
A N S+ +E EDSELD QYL+N F+ SKRQSF+L+ +P K C V S++L+
Sbjct: 103569 HALNLSQEKVEMEDSELDTQYLQNTFQVSKRQSFALFSKPRSPQKDC-AHSVPSKELSPK 103393
Query: 901 -TSCPDQVEERNSKYLKTENLQEEKTTAENLSSVCEKFE-----TCESAC-VSPVSCFVS 953
T+ Q E + + + ++Q T L C++ + C+ C + P S + S
Sbjct: 103392 VTAKGKQKERQGQEEFEISHVQAVAATV-GLPVPCQEGKLAADTMCDRGCRLCPSSHYRS 103216
Query: 954 SAACVHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKL 1013
+ +S+ ++ + +R ++ D +P + T ST + V ++
Sbjct: 103215 GENGLSATGKSGISQNSHFKQSVSPIR--SSIKTDNRKPLTEGRFERHTSSTEMAVGNEN 103042
Query: 1014 RLSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSES-------NQVEKAEVVDDKGL 1066
L S +++ N A Q G ++ E + +S N+ K V
Sbjct: 103041 ILQSTVHTVSLNNRGN----ACQEAGSGSIHEVCSTGDSFPGQLGRNRGPKVNTVPPLDS 102874
Query: 1067 MQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVR 1126
MQ P CQQ+ + L KK + + V S
Sbjct: 102873 MQ---------PGVCQQSVPVSDKYLEIKK--------------QEGEAVCADFSPCLFS 102763
Query: 1127 EALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEV 1186
+ LE+S+ G F SETPD LL D + + SF + + SAVF +G+ +E
Sbjct: 102762 DHLEQSMSG-KVFQVCSETPDDLL-DDVEIQGHTSFGEGDIMERSAVF---NGSILRRES 102598
Query: 1187 --NDSVVSCKPRSEGIQRFRRRAQKLQXXXXXXXXXXXLPSFQELMFGKSVSTP--LQIQ 1242
+ S V+ +S+ + R R+ + + LP FQ L+ + +TP +
Sbjct: 102597 SRSPSPVTHASKSQSLHRASRKLESSE--ESDSTEDEDLPCFQHLL-SRISNTPELTRCS 102427
Query: 1243 KQVTSVVQSSANPSTLP----CSECLNENNEQKTLEAALSNECASPSQESECSVNLFSSQ 1298
VT + A + P S+C NNE +EA+ ++ S++ CS ++FSSQ
Sbjct: 102426 SAVTQRMPEKAEGTQAPWKGSSSDC---NNEVIMIEASQEHQF---SEDPRCSGSMFSSQ 102265
Query: 1299 SNMSEESVDGAQELKKTLTQVSN-VKKSKEAPQSC 1332
+ ++ S A +Q SN + SK+ C
Sbjct: 102264 HSAAQGSTANAN------SQDSNFIPPSKQRSHQC 102178
Score = 49.3 bits (116), Expect = 0.004
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -1
Query: 1583 DEELVCERTLKYFLGIAGRKWVVSY 1607
D E VCERTLKYFLGIAG KW+VSY
Sbjct: 81297 DAEFVCERTLKYFLGIAGGKWIVSY 81223
Score = 44.3 bits (103), Expect = 0.12
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = -1
Query: 1622 EEHFEVKGDVINGRNHQGPKRARQS 1646
+ FEVKGDV+ GRNHQGP+R+R+S
Sbjct: 76755 QHEFEVKGDVVTGRNHQGPRRSRES 76681
Score = 43.9 bits (102), Expect = 0.16
Identities = 20/28 (71%), Positives = 23/28 (81%)
Frame = -1
Query: 45 RFCMFKLLSRKKKGVIQCPLCKTEVTKR 72
RFCM KLL++KK G QCPLCK E+TKR
Sbjct: 114345 RFCMLKLLNQKK-GPSQCPLCKNEITKR 114265
Score = 39.7 bits (91), Expect = 3.0
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 1383 LSTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQ 1415
L QQ+ M+ NL KLQQEMA LEAVL+Q G+Q
Sbjct: 96192 LVLQQRATMKYNLIKLQQEMAHLEAVLEQRGNQ 96094
Score = 39.7 bits (91), Expect = 3.0
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -2
Query: 1 MDLSVIAIGDVQNVLSAMQKNLECPV 26
MDLS + I +VQNVL AMQK LECP+
Sbjct: 127832 MDLSAVQIQEVQNVLHAMQKILECPI 127755
Score = 38.9 bits (89), Expect = 5.1
Identities = 14/18 (77%), Positives = 18/18 (99%)
Frame = -3
Query: 28 LDVIKEPVSTKCDHVFCR 45
L++IKEPVSTKCDH+FC+
Sbjct: 118771 LELIKEPVSTKCDHIFCK 118718
>gb|AF284022.1|AF284022 Elephas maximus BRCA1 gene, partial cds
Length = 2786
Score = 144 bits (362), Expect = 1e-31
Identities = 227/934 (24%), Positives = 385/934 (40%), Gaps = 50/934 (5%)
Frame = +2
Query: 293 NASPLKN-DTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L++ ++S L + M+VE+ + +K+++ L S + R + KE D PS E
Sbjct: 17 HASSLQHKNSSLLLTKDRMNVEKAEFCNKSKQPGLARSQQSRWAESKETCNDRQTPSTE- 193
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ + + L E++ V K P+ + ++ LN SIQKVNEWF
Sbjct: 194 -KKVDVNANPLYERKE-VNKQKPPRSENLRDTQDIPWITLNSSIQKVNEWFFRSDGLDVL 367
Query: 410 XXXQNDHAEATDASGEGDISL-SDKDSCISEKTNPIVDSVEFAVIERNKRW-TKQTTYSI 467
ND + A G + + ++ S SEK + + + A+I ++R +K +I
Sbjct: 368 ----NDEGPESSAEVAGALEVPNEVHSNSSEKIDLMASDLRGALICESERVPSKPAESNI 535
Query: 468 EDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACIL 525
EDKIFGKTY R S+ S I D I+ A E A E N L
Sbjct: 536 EDKIFGKTYRRKAGISHLSHITEDLIMGAIASEPQIAREHPFTNKLKRKRRTSG-----L 700
Query: 526 QPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSA--VKEN----PLLEKRKGSTLA 579
PEDFIKK DL + P+ I E+ N A +EN ++K K +
Sbjct: 701 HPEDFIKKVDLAVVQKIPEKINQETDHVEQNGQVMNIANGGRENETKGDYVQKEKNAIPT 880
Query: 580 EFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VD 638
E + ++ AE +S S+ ++ELN + K+ K K STR A+ L V+
Sbjct: 881 ESLAKESAFRTKAEPISSSISNMEVELNMHNSKAPKKNRLRRKS---STRHIHALELVVN 1051
Query: 639 RNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMRVI 693
RN E I+S+ S+EE K K I
Sbjct: 1052 RNLSPPTHTELQIDSWSSSEETKKKSSEQKPIRHNRNLQLMKNQETATGAKKSNKPKEQI 1231
Query: 694 KEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISS 753
+ +DS PE + + ++C Q+ ++ ++ +LE + +
Sbjct: 1232 SKRHGADSYPELHLTTTAGFI----TKCSSSDNLQEFVNPSLQGEKTEENLETIQVSNIT 1399
Query: 754 KNSDDMAKNRS-FFNPTFSCQLSNFN-SPSSKAGSQEGEMLGKLFLP----QSPSKTVLH 807
K D+ N S + +N + P + G+Q+ L P +P++
Sbjct: 1400 KEPKDLVLNGGRDLQTKKSIESTNISVIPDTVYGTQDSVSLLGADTPGKAKTAPNQCASQ 1579
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
+I + + SC +D +RN + F+ A + E +E E+SELD QYL
Sbjct: 1580 CTAIENPSELTNSC---PKD----TRNDTEGFKDLLRCEASHIQETCIEIEESELDTQYL 1738
Query: 868 RNIFRSSKRQSFSLYPTPMKACTTDDVASE-------KLNTSCPDQVEERNSKYLK---- 916
++ F+ SKRQSF+L+ P K C T S+ K+ C ++ E + ++ K
Sbjct: 1739 QSTFKVSKRQSFALFSNPEKKCATICAHSKSLRKQSPKVTLVCGEKEENQGNREPKIKHE 1918
Query: 917 ---------TENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQDVS 967
E Q+EK + S+ C+S S F S + + T + +S
Sbjct: 1919 QAVHMPAGYPEACQKEKPSDYTKYSIKGVSGLCQS------SQFRGSESELITADGHGIS 2080
Query: 968 KVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQ 1027
+ N + +L ++ E+ E T+S + ++ + ++S S Q
Sbjct: 2081 Q--NPDQIPSLSPTRSSVKTKCKTNLLEERFEEHTISLERAMRNE---NVIQSTVSTVSQ 2245
Query: 1028 SNTEEHAFQRTGLNAVSETYFS----SESNQVEKAEVVDDKG-LMQHFQPSPMLCPTACQ 1082
+N E A + ++++E S S + +AE+ +G + ++ P +
Sbjct: 2246 NNIRESASKEASSSSINEVCSSINEVGSSGENIQAEISRKRGPKLNAVLRLGLMQPEVYK 2425
Query: 1083 QNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDL 1142
Q+ +C+ K +G E V+Q V+T S + + LE+ +
Sbjct: 2426 QSLPISDCKHPGIK--------TQGENEGVVQAVNTDFSPCLISDNLEQPVGTSRASQVC 2581
Query: 1143 SETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL D++ +E+ SF + K+ S VF+K
Sbjct: 2582 SETPDDLL-DDDEIKENISFAENSIKERS-VFIK 2677
>gb|BC003248.1|BC003248 Mus musculus, clone IMAGE:3498707, mRNA, partial cds
Length = 2148
Score = 144 bits (362), Expect = 1e-31
Identities = 68/120 (56%), Positives = 88/120 (72%)
Frame = +2
Query: 1527 KENAASSGTTCRTEMSIVASGLNQSEHLMVQKFARKTQSTFSNHITDGTTHVIMKTDEEL 1586
K SS ++S+V SGL E + VQKFA K + T ++ IT+ TTHVI+KTD E
Sbjct: 149 KPELTSSEERADRDISMVVSGLTPKEVMTVQKFAEKYRLTLTDAITEETTHVIIKTDAEF 328
Query: 1587 VCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEEHFEVKGDVINGRNHQGPKRARQS 1646
VCERTLKYFLGIAG KW+VSY W+++S +E R+L+ FEVKGDV+ GRNHQGP+R+R+S
Sbjct: 329 VCERTLKYFLGIAGGKWIVSYSWVVRSIQERRLLNVHEFEVKGDVVTGRNHQGPRRSRES 508
>gb|AF332048.1|AF332048 Meriones shawi BRCA1 (BRCA1) gene, partial cds
Length = 3092
Score = 143 bits (361), Expect = 1e-31
Identities = 261/1085 (24%), Positives = 437/1085 (40%), Gaps = 50/1085 (4%)
Frame = +3
Query: 293 NASPLKNDTSFLKNAEE-MDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ S L E+ M+VE+ + +K+++ L S + R + KE D +PS E
Sbjct: 60 HASSLQHENSSLLLTEDRMNVEKAEFCNKSKQSGLARSQQSRWAESKETCNDRQIPSTE- 236
Query: 350 VEMCEPMDDSLL-EKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXX 408
+ + DSL K+ EK L + V LN SI+KVNEWF
Sbjct: 237 -KKVDSNADSLCGRKKCNNEKSLC--LEDSGATQNVPWITLNSSIRKVNEWFSRTGEMLT 407
Query: 409 XXXXQNDHAEATDASGEGDISLSDK-DSCIS--EKTNPIVDSVEFAVIERNKR-WTKQTT 464
+D +A++A + +S++ D C+S +KT+ + AV+ +++R +K
Sbjct: 408 SDSA-SDKRQASNAEAAVALEVSNEVDGCVSNSKKTDLVTSDPHHAVMCKSERDLSKPVK 584
Query: 465 YSIEDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACI 524
+I+DKIFGKTY+R + +I+ E +E N S C
Sbjct: 585 NNIKDKIFGKTYQRKGSLPHLNHVTEIIGTFIAEPQTTQEQPFTNKLKSKRR----STC- 749
Query: 525 LQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVKENPLLEKRKGSTLAEFKE- 583
L PEDFIKK DL + P+ I G + E D+ + N + K + L E K
Sbjct: 750 LYPEDFIKKADLTIVQKTPENINQ--GTDQMEPNDQVMGITSNGQENETKNNDLQEEKTA 923
Query: 584 -------RGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL 636
+ + A +S SD ++EL+ + + K K ST A+
Sbjct: 924 NPVGSLGKESAFTAKARPISNSISDLEIELSVYNSNAPKKNRLRRKA---STVCALAVEP 1094
Query: 637 VDRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE- 695
V RNP S AE I+++ S+EE K + + +R I++
Sbjct: 1095 VSRNPSSPTHAELQIDNFSSSEETKKNN--------------------SDQAPVRHIRKP 1214
Query: 696 --AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISS 753
+ + PE ER+ V D ++ + S S +D G S
Sbjct: 1215 LLTADPEPAPEAK---KERSEQVRKRTASDAFPEEKLTSTDSPSDPEGP-------VKPS 1364
Query: 754 KNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQE--GEMLGKLFLPQSPSKT-----VL 806
++ K + P + +L + + S E E +P + + T VL
Sbjct: 1365 PQRKEIEKLETSKMPDNTKELKDLVLGGERCLSTERSEESTSVSLVPDTDNDTQNSVSVL 1544
Query: 807 HAASILTEEKRSWSC-TVF-----SQDKGCCSRNVPKDFRIGKSPMAKNASEF--TMEAE 858
A ++ + + S C T F +++ S++ D K P + T+E E
Sbjct: 1545 DANTVRSAKTGSIQCLTQFVASENTKELVYGSKDAGSDTECFKHPSKHELNHIPETVEME 1724
Query: 859 DSELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLNTSC----PDQVEERN 911
SELD QYL+N F+ SKRQSF+L+ +P+ C S L S P E
Sbjct: 1725 GSELDTQYLQNTFQVSKRQSFALFSKPRSPLNECAAVYTHSVSLLNSFRGLGPAVTSEGE 1904
Query: 912 SKYLKTE---NLQEEKTTAENLSSVCEKFET-CESACVSPVSCFVSSAACVHTVENQDVS 967
+ E + + T A +L + ++ + + C S + E
Sbjct: 1905 ESQVHEESEISHVQAVTAAMDLPVLRQQGKPGANTLCAGVCGPCPSFQYRSNESEGSTSG 2084
Query: 968 KVANHGNLTTLLRICAARNE---DGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQ 1024
K N + R+ D + E+ + TLS V ++ + VRS+
Sbjct: 2085 KPGVPQNSYLKQSVSPVRSSVKTDRRKTLSEERLEKHTLSAKKAVGNE---TVVRSSVHT 2255
Query: 1025 SDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTACQQN 1084
+ Q+N +A Q +++E SSE+ Q ++ K + P +L P C+Q
Sbjct: 2256 TSQNN-GGNACQEASSGSINEVCSSSENFQGQRDRNRGSK--VNTVLPLDLLQPEVCKQ- 2423
Query: 1085 PAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDLSE 1144
+++N L KK + + V T S + LE+S++ + F SE
Sbjct: 2424 -SDYNKYLEMKK--------------QEGKAVGTDFSPCLFSDHLEQSMRSGNIFQVCSE 2558
Query: 1145 TPDGLLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGIQRFR 1204
TPD LL D + +E+ SF + + SAVF +G+ +E N S S + +RF
Sbjct: 2559 TPDDLL-DDVEIQENTSFGEGDVMEKSAVF---NGSVQRREFNRS-PSPLTHASLARRFH 2723
Query: 1205 RRAQKLQXX-XXXXXXXXXLPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPCSEC 1263
R ++KL+ LP FQ L+ ++ VT A + P +
Sbjct: 2724 RGSRKLESSEGSDSSEDEDLPCFQHLL--------SRVSSAVTQGRSEKAEGALAPWKDS 2879
Query: 1264 LNE-NNEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDGAQELKKTLTQVSNV 1322
+++ NNE +EA+ + S++ + S ++FSSQ + + S A L
Sbjct: 2880 ISDCNNEVILVEASQEHHF---SEDPKYSGSMFSSQYSAVQGSTANADSQDPLLNPSKQT 3050
Query: 1323 KKSKE 1327
+ E
Sbjct: 3051 SQHSE 3065
>gb|AF332043.1|AF332043 Oryzomys couesi BRCA1 (BRCA1) gene, partial cds
Length = 3099
Score = 142 bits (357), Expect = 4e-31
Identities = 246/1061 (23%), Positives = 419/1061 (39%), Gaps = 45/1061 (4%)
Frame = +1
Query: 293 NASPLKNDTSFLKNAEE-MDVEETQCSHKNQELDLEDSSEGRLDKIKEK--DICVPSVED 349
+AS L+++ S L E+ M+VE+ + +K+++ DL S R + KE + +PS E
Sbjct: 55 HASSLQHENSSLLLTEDRMNVEKAELYNKSKQSDLARSQRNRWAESKESCNNRQIPSAEK 234
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
++ + K+ +K L P+ + +V LN SIQKVNEWF
Sbjct: 235 -KVDLNAESFCGRKKWNNQKSLCPE--NSRATQDVPWITLNSSIQKVNEWFSKTGEMLTS 405
Query: 410 XXXQNDH--AEATDASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSI 467
+ + A A E S S K+ T+ + A+++++KR K +I
Sbjct: 406 DGASDRRLRSPAEAAVEENGCSSSSKE------TDSVAIHPHSALMDKSKRDCKPVEKNI 567
Query: 468 EDKIFGKTYERGRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
+DKIFGKTY+R + +I+ E +E N L P
Sbjct: 568 KDKIFGKTYQRKGSFPQLNHVTEIINTFTIEPQITQEHSFTNKLKRKRRTT-----CLHP 732
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEK---EKCDENSAVKENPL----LEKRKGSTLAE 580
EDFIKK DL + P+ ++ D K + NS +EN L+K K T
Sbjct: 733 EDFIKKADLTVIQKTPEN-RNQEADQIKPNGQAMGINSTGQENETKGNSLQKEKNVTPIT 909
Query: 581 FKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRC--AIHLVD 638
+ + A+ VS S+ +LELN + ++ K R + T+C A+ LV
Sbjct: 910 SLGKESVFTTIAKPVSSSISNLELELNVHNSEAPKK-----NRLRRKSSTKCVLALELVS 1074
Query: 639 RNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXX----ITKETGK-MRVI 693
NP E I+S S+EE K + TKE + I
Sbjct: 1075 GNPSPPSCTEFQIDSCSSSEETKKNNSNLMPVKDIQKPQLIENTDPGPDTKENNEPNEQI 1254
Query: 694 KEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISS 753
++ + SD+ PE N+ + C K Q ++ S + LE + + S+
Sbjct: 1255 RKRRASDAFPEEKC----TNIPGLLTSCPSSNKPQGPVT-PSPQRKEVEKLETSQMSGST 1419
Query: 754 KNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKTVLHAASILT 813
K+ D+ S + S ++ S E + + L + + TV +A + +
Sbjct: 1420 KDLKDLVLGG---EQGLSTERSEESTSVSLVADTEYDTQNSVSLLE--ANTVRYAKTGSS 1584
Query: 814 EEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEF--TMEAEDSELDMQYLRNIF 871
+ + + +D S N K + S T+E E+ ELD QYL+ F
Sbjct: 1585 QCLTQFVASETPKDLAHGSNNAGSSTECVKHQLRHELSHIQETVEIEEGELDTQYLQKTF 1764
Query: 872 RSSKRQSFSLYP---TPMKACTTDDVASEKLNTSCPD-QVEERNSKYLKTENLQEEKTTA 927
+ S RQ+F+L+ P K C +S L P + + ++ + E K
Sbjct: 1765 QVSNRQTFTLFSKPGDPQKECIAACPSSVSLREVSPKVSSTGEHEEVIRGQEESEIKRVQ 1944
Query: 928 ENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQDVSKVANHG------------NL 975
++V E S C S C + ++ S + G +
Sbjct: 1945 VTSATVGFPLLHQEGTPGSERMCAGVSRLCSSSQYGRNPSSAGDLGIPQNSHLKQSVSPI 2124
Query: 976 TTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSNTEEHAF 1035
T+ ++ + + +K +E+T+ G +S + + N ++A
Sbjct: 2125 TSFVKTDQRKTLSEGQFEKHTLSTERTMGNGSADQSTM----------YTVSQNNRKNAC 2274
Query: 1036 QRTGLNAVSETYFSSESNQVE-------KAEVVDDKGLMQHFQPSPMLCPTACQQNPAEF 1088
Q L +++E Y S E+ Q + K V GLM+ P CQQ
Sbjct: 2275 QEANLGSINEVYSSGETVQGQQGRKRGTKLNTVLSLGLMK---------PEVCQQGFPVS 2427
Query: 1089 NCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDLSETPDG 1148
+ + E K K +E V S+ L FS + L++ + + F SETPD
Sbjct: 2428 DYKYLEMK---------KQEDEAVDADFSSCL--FS--DKLKQPMGSGNIFQVCSETPDD 2568
Query: 1149 LLCSDNDTEESASFYVTNRKDTSAVFVKRSGAAWVKEVNDSVVSCKPRSEGIQRFRRRAQ 1208
LL D + +E+ SF + + SAVF +G+ +E + S S + RR++
Sbjct: 2569 LL-DDVEIQENTSFGEDDIMEKSAVF---NGSVQRREFSRS-PSPLTHASLAHSLHRRSR 2733
Query: 1209 KLQXXXXXX-XXXXXLPSFQELMFGKSVSTPLQIQKQVTSVVQSSANPSTLPCSECLNEN 1267
KL+ LPSFQ + S Q V + A + +P + ++
Sbjct: 2734 KLKSSKESECDEDEDLPSFQHFLGRVSNIPEHTRQSDVIQCLSEKAEETQVPWKRSIGDS 2913
Query: 1268 NEQKTLEAALSNECASPSQESECSVNLFSSQSNMSEESVDG 1308
+E +EA+ + S++++CS ++FSSQ + ++ G
Sbjct: 2914 DEVILIEASQEHHL---SEDAKCSGSMFSSQHSAADAGSQG 3027
>gb|AY057830.1| Tapirus pinchaque BRCA1 (BRCA1) gene, partial cds
Length = 2842
Score = 141 bits (356), Expect = 6e-31
Identities = 230/954 (24%), Positives = 375/954 (39%), Gaps = 70/954 (7%)
Frame = +2
Query: 293 NASPLKNDT-SFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVE 351
+AS L+++ S L + M+VE+ + +K+++ L S + R + KE + D +
Sbjct: 17 HASSLQHENGSLLLTKDRMNVEKAEFCNKSKQPGLAKSQQSRWAESKE------TCNDRQ 178
Query: 352 MCEPMDDSLLEKEP-PVEKPLQPKIPHCPTLN----EVSTKGLNQSIQKVNEWFXXXXXX 406
+L +P K L + P C + +V LN SIQKVNEWF
Sbjct: 179 TPNSEKKLVLNADPLHGRKELNKQKPPCSNSSRDSQDVPWITLNSSIQKVNEWFSRSDEM 358
Query: 407 XXXXXXQNDHAEA-TDASGEGDISLS-DKDSCISEKTNPIVDSVEFAVIERNKR-WTKQT 463
++ E T+ +G ++ D S SEK + + A+I ++R +K
Sbjct: 359 LSSDDSRDGGPETHTEVAGAVEVPNEVDGYSGSSEKIDLMASDPPGALICESERVHSKPV 538
Query: 464 TYSIEDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXS 521
+IEDKIFGKTY R N S I + I+ A+ E +E L N
Sbjct: 539 ANNIEDKIFGKTYRRKANLPNLSHITEELIIEASAIEPQITQERPLTNKLKHKRRTTSG- 715
Query: 522 ACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSA------VKENPLLEKRKG 575
L PEDFIKK D + P+ + E+ N A + ++K K
Sbjct: 716 ---LHPEDFIKKVDFAIVQKTPEKVIEGTEQIEQNDHVMNIANNGHENETKGDCVQKEKN 886
Query: 576 STLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIH 635
+ E E+ ++ AE +S S+ +LELN K+ K K STR A+
Sbjct: 887 ANPTESLEKESAFRTEAEPISSSISNLELELNFRSSKAPKKNRLRRKS---STRHIHALE 1057
Query: 636 L-VDRNPGSFDLAEPLINSYPSNEEPSKADC-----XXXXXXXXXXXXXXXXXITKETGK 689
L V RNP + E I+ S+EE K + K
Sbjct: 1058 LVVSRNPSPPNHTELQIDCCSSSEEIKKKNSGQMPGRHRRKLQLMEDKAPATGAKKSNKP 1237
Query: 690 MRVIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGI 749
I + S + PE + N+ + C K Q+ ++ + +L A +
Sbjct: 1238 NEQINKRLASHAFPELKL----TNIPGFFANCSSSNKLQEFVNPSLQREEIEQNLGAIQV 1405
Query: 750 QISSKNSDD--------MAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSP 801
SSK+ D + RS + + S E + LGK
Sbjct: 1406 FNSSKDPKDLILSGGRGLQAERSVESTSISLVPDTDYGTQDSISLLEADPLGK------- 1564
Query: 802 SKTVLHAASILTEEKRSWSCTVFSQDKGC---CSRNVPKDFRIGKSPMAK---NASEFTM 855
+KT + + L C K CS++ D K P+ + + E ++
Sbjct: 1565 AKTAPNQGASL--------CAATENSKELMHGCSKDTRNDTEGLKDPLXRXVNHTQEPSI 1720
Query: 856 EAEDSELDMQYLRNIFRSSKRQSFSLYPTP--MKACTTDDV-------ASEKLNTSCPDQ 906
E E+SELD QYL N F+ SKRQSF+L+ + C T S K+ C +
Sbjct: 1721 EMEESELDTQYLHNTFKVSKRQSFALFSNSGNPEECATVCAHSRPLRKESPKVTLECGRK 1900
Query: 907 VEERNSKYLKTENLQEEKTTAENLSSVCEK-----FETCESACVS---PVSCFVSSAACV 958
E + K K +++Q T A VC+K + C VS S F + +
Sbjct: 1901 EENQGKKESKIKHVQSVHTPA-GFPVVCQKDKPGDYVKCSLKEVSRRCQSSQFRGNETEL 2077
Query: 959 HTVENQDVSK----VANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLR 1014
T +S+ + + + + ++ +N + ++ E+
Sbjct: 2078 ITANKHGLSQNLYYIPSFSPIRSSVKTTCKKNVSEEKLEEHSVSPERAXGNE-------- 2233
Query: 1015 LSPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDD 1063
S ++S S Q+N E F+ G ++++E S+ S + +AE+ +
Sbjct: 2234 -SIIQSTMSTISQNNIRESTFKEVGSSSINEVGSSTNEVGSSINEVGSSGENIQAELGRN 2410
Query: 1064 KG-LMQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSE 1122
+G + ++ P +Q+ NC+ E K +G E V+Q V+T S
Sbjct: 2411 RGPKLNAILRLGLMQPEVYKQSHPISNCKHPEIK--------RQGENEGVVQAVNTDFSP 2566
Query: 1123 FSVREALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
+ + LE+ + G S SETPD LL +D+ EE+ +F + K+ SAVF K
Sbjct: 2567 CLISDNLEQPM-GSSCAQVCSETPDDLL-NDDKIEENINFAESGIKERSAVFSK 2722
>gb|AF332044.1|AF332044 Sciurus niger BRCA1 (BRCA1) gene, partial cds
Length = 2878
Score = 140 bits (354), Expect = 9e-31
Identities = 229/952 (24%), Positives = 389/952 (40%), Gaps = 69/952 (7%)
Frame = +2
Query: 294 ASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDV 350
AS L+++ +S L + M+VE+ + +K+++ S + R K KE D PS E
Sbjct: 119 ASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGFARSQQSRWAKSKETCNDRQTPSTEK- 295
Query: 351 EMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXX 410
++ D KEP +KP P + +V LN SI+KVNEWF
Sbjct: 296 KVDLNADPQYERKEPSKQKP--PCSENSRDSQDVPWITLNSSIRKVNEWFSRSDEMLTSD 469
Query: 411 XXQNDHAEATDASGEGDISLS---DKDSCISEKTNPIVDSVEFAVIERNKR-WTKQTTYS 466
+D ++A G + + D S SEK + + A++ + +R +K +
Sbjct: 470 D-PDDGGSESNAEVTGVLEIPNEVDGFSGSSEKIDLLATDPHNALMSKCERVCSKAVESN 646
Query: 467 IEDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACI 524
IEDKIFGKTY R N S I + I+ A E +E L N ++C
Sbjct: 647 IEDKIFGKTYRRKASLPNLSHITENLIIGAFATEPQITQERPLTNK---LKRKRRTTSC- 814
Query: 525 LQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCD----------ENSAVKENPLLEKRK 574
L PEDFIKK DL + P+ K + G + ++ D EN +N ++K K
Sbjct: 815 LHPEDFIKKADLAVVQKTPE--KMNQGTDQMKQNDQVMNITNSGQENETKVDN--VQKEK 982
Query: 575 GSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKS-TKNACSTAKGCRHSTRTRCA 633
+ E E+ +K A +S S+ +LELN + K+ KN RH
Sbjct: 983 NANPVESLEKESGFKTKAGPISSSISNMELELNIHNSKAPKKNRLRRKSSTRH------- 1141
Query: 634 IHLVDRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVI 693
IH++ EP++N S ++ + + K++++
Sbjct: 1142 IHVL----------EPVVNRNTSPPHHTELQIDSFTSSEEIKTRNSNQMLVRHGRKLQLM 1291
Query: 694 KEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGA--DLEANGIQI 751
++A+ ++RK + ++ N A L+ GI
Sbjct: 1292 EDAE----------------------PATEVRKSNKLNEQINKRHTNNAFPGLKLKGISG 1405
Query: 752 SSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEML-GKLFL-----PQSPSKTV 805
N +K F NP + N S+ + +L G+ L +S S ++
Sbjct: 1406 LFTNCSSSSKVEEFVNPNLQEDETEENLKSNDTKDPKDMVLSGERVLQTERSAESTSISL 1585
Query: 806 LHAASILTEEKRS-WSCTVFSQDKGCCSRNV--------PKD--FRIGKSP------MAK 848
T++ S F + + +++V PKD F+ ++
Sbjct: 1586 GPDTDYGTQDSISLLEANTFGKARTASNQHVTQYVAIENPKDGLFKDTRNDPDSLRCEVN 1765
Query: 849 NASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTP---MKACTTDDVASEKLNTSCPD 905
+ E +E E+SELD QYL N F+ SKRQSF+L+ K S+ L P+
Sbjct: 1766 HIQETNVEMEESELDTQYLENTFQVSKRQSFALFSNQGNLEKEYAVIYTPSKSLRKQSPE 1945
Query: 906 QVEERNSKYLKTENLQEEK---TTAENLSSVCE-----KFETCESACVSPVSCFVSSAAC 957
+ E K E +E K A N + + ++ E + + P F +
Sbjct: 1946 VIIECEQKEENWEKKKESKIRHVQAVNATMGIKLDRDAQYNITEVSRMCPSFQFRGNETK 2125
Query: 958 VHTVENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSP 1017
+ T + +S+ N ++ ++ I ++ N + E+ + + S VE K
Sbjct: 2126 LITADKHGISQ--NPYHMPSISTIRSSVNSKCKKNLSEEKFEKHSRSPEKAVEYK---RI 2290
Query: 1018 VRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG- 1065
++S S Q+N + AF+ ++++E S+ S + +AE+ ++G
Sbjct: 2291 IQSTVSTISQNNIGQSAFKEANSDSINEAGSSTNEVGSSINEVGSSGENIQAELGRNRGP 2470
Query: 1066 LMQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSV 1125
+ ++ P AC+QN NC+ E K + E+ V+Q V+T S +
Sbjct: 2471 KLNAVLRLGLMQPEACKQNLLS-NCKYPEIK---------RQGEDEVVQVVNTDFSPCLI 2620
Query: 1126 REALEESLKGHSDFTDL-SETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
+ LE+ + G+S T + SETPD LL D++ +E+ SF K+ SAVF K
Sbjct: 2621 SDDLEQPM-GNSHVTQVCSETPDDLL-DDDEIQENTSFVEGGIKERSAVFSK 2770
>gb|AY057827.1| Ochotona princeps BRCA1 (BRCA1) gene, partial cds
Length = 2692
Score = 138 bits (348), Expect = 5e-30
Identities = 226/938 (24%), Positives = 380/938 (40%), Gaps = 56/938 (5%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGR-LDKIKE-KDICVPSVED 349
+AS L+++ +S L + VE+ + K++ L S +GR + +K D PS E
Sbjct: 17 HASSLQHENSSLLLTKDRTKVEKAELCDKSKPRGLARSQQGRWAESVKTYHDRQTPSTEG 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
E +D K+ +KP P+ C N T +N SIQKVNEWF
Sbjct: 197 TEPLN-VDSLCGRKQWKKQKPACPET--CRDANSWLT--VNSSIQKVNEWFSRSNVILTP 361
Query: 410 XXXQNDHAEATDASGEGDISLSDKD---SCISEKTNPIVDSVEFAVIERNKR-WTKQTTY 465
E++ A G + S+K S SEK + A++ +KR +K
Sbjct: 362 DDSLGQQTESS-AITTGTLQFSNKADGYSVSSEKAGLLTSGSHNALVCESKRIHSKPVES 538
Query: 466 SIEDKIFGKTYERGRK-SNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACI 524
+I+DKIFGKTY+R N S ++ D + + +A E + + +
Sbjct: 539 TIKDKIFGKTYQRKASLPNLSRVIEDPV-----REVSAVEPQITHPPTNKLKRKRRATIG 703
Query: 525 LQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDE--------NSAVKENPLLEKRKGS 576
L PEDFIKK DL ++ P+ + + G + + D+ N + ++K K +
Sbjct: 704 LCPEDFIKKVDLTGVEKTPK--ERNQGTEQMMQNDQVMTITNGGNENETKGDHVQKEKSA 877
Query: 577 TLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL 636
E E+ + AE +S S+ +LELN K+ K K STR A+ L
Sbjct: 878 NPTESLEKESAFNTKAEPISSSISNMELELNIHKSKTPKKNRLRRKS---STRRVHALEL 1048
Query: 637 V-DRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
V P + E I++ S+EE + T++ I++
Sbjct: 1049 VVSEKPSPPNHTELQIDNCSSSEETNFGQVRVSRRRKLQVIQDVTG--TRKNKPNEQIRK 1222
Query: 696 AKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKN 755
+ SD+ PE + V +VL S K+ + D N ++A+ K
Sbjct: 1223 RQASDASPEFKLTNVP-SVLTXYSSSKEHHESVDPSLQRGEVGENHDTVQASNTTTDPKG 1399
Query: 756 SDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEE 815
++ RS + SN P + +Q+ L + ++T+ +A + +
Sbjct: 1400 LP-LSGERSMQGERSAESTSNSLIPDTDYDTQDSISLLE-------ARTLRNAKTAANGQ 1555
Query: 816 KRSWSCTVFSQDKGCC----SRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYLRNIF 871
+ T Q+ + + P+ F+ + E E E+SELD QYL+N F
Sbjct: 1556 ESESVATGNPQEVAPAYLENTGDNPEGFKDPLRSEDDHIQETDTELEESELDTQYLQNTF 1735
Query: 872 RSSKRQSFSLYP---TPMKACTTDDV-------ASEKLNTSCPDQVEERNSKYLKTENLQ 921
++SKRQSF+L+ P + C T S K++ C + E + K + Q
Sbjct: 1736 KTSKRQSFALFSKPGDPERGCVTAHTHSSCLRNQSPKISLECEQKEENPKKEESKARHWQ 1915
Query: 922 EEKTTAENLSSVCEK-----FETCESACVSPV---SCFVSSAACVHTVENQDVSKVANHG 973
+T VC+K + C +S + S F + + T ++ H
Sbjct: 1916 AVNSTV-GFPVVCQKDKPGDYAKCSIKEISKLCLSSQFTGNETGLITANKHELLHNPYHI 2092
Query: 974 NLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSNTEEH 1033
+ +++ +N P + E+ E ++S+ V S+ S S S Q+ +E
Sbjct: 2093 PPISPIKL-TVKNTCELSPSE-ERSEEHSVSSERAVGSE---SIFYSTVSTISQNYMKES 2257
Query: 1034 AFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLM-QHFQPSP---------------MLC 1077
A + G ++V+E SS +N+V +++ G ++ Q P ++
Sbjct: 2258 ARKEGGSSSVNEV--SSSTNEV--CSSINEVGSSEENIQARPGRSRAPELNSVLRLSLVQ 2425
Query: 1078 PTACQQNPAEFNCELTEKKIITRERSLVKG-NEERVIQTVSTGLSEFSVREALEESLKGH 1136
P C+Q+ N +L E VKG E V+Q V++ + V E E +
Sbjct: 2426 PGVCEQSLPINNFKLPE----------VKGPGENEVVQAVNSDFYSYLVSETQEPPIGSK 2575
Query: 1137 SDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVF 1174
+ SETPD LL D D E+ SF ++ SAVF
Sbjct: 2576 NPSQICSETPDDLL-DDYDVMENTSFMDDGIRERSAVF 2686
>gb|AF355795.1|AF355795 Phascogale tapoatafa BRCA1 gene, partial cds
Length = 2381
Score = 137 bits (345), Expect = 1e-29
Identities = 212/837 (25%), Positives = 330/837 (39%), Gaps = 40/837 (4%)
Frame = +3
Query: 295 SPLKNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDIC----VPSVEDV 350
S L +S L N + M E+ + S+K+++ L + + RLD+ K IC PSV
Sbjct: 3 SLLPETSSLLPNTDRMS-EKAELSNKSKQSGLARNQQSRLDE--SKGICSTGKTPSVG-- 167
Query: 351 EMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXX----XXX 406
E E L EK+ EKP P+ P N +S L SIQKVNEW
Sbjct: 168 EQPELNAHHLCEKQELKEKPQGPEGPRGNPQNCLSGTKLKSSIQKVNEWLSRSNDILASD 347
Query: 407 XXXXXXQNDHAEATDASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKR-WTKQT-T 464
+AE A +G SD +S ISEKT+ + D+ + A + KR +T+
Sbjct: 348 CSLDKNHKQNAEIASALEDGHPDNSDGNSSISEKTDVVADTADGAWLHVPKRTYTRPAEN 527
Query: 465 YSIEDKIFGKTYER-GRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSAC 523
+I+DKIFGKTY R N + I +++ T D+ L N+ + C
Sbjct: 528 NNIKDKIFGKTYRRKSGHPNLNHITENLIVETVVPDSLVPPEPLKNT---KLKRKRKTIC 698
Query: 524 ILQPEDFIKKKDLEEADRCPQGIKSSLGD--AEKEKCDENSAVKENPLLEKRKGSTLAEF 581
LQPEDFI KK + + P+ K D E+E+ D+ + +K + E
Sbjct: 699 DLQPEDFI-KKTVPVTHKTPEK-KHHAADQTLEREQNDQVMNMDNGHPEQKALNGHVGEI 872
Query: 582 KERGLQWKNAAEKVS--GKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VD 638
KE +AEK S ++ LN + TK + S + CA+ L VD
Sbjct: 873 KEAQTSELFSAEKESTFRTGTEPAASLNGEETNITK---KDKLRKQPSFKIVCALELGVD 1043
Query: 639 RNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKN 698
+P S + E I+SYPS+EE + + +++E + K K
Sbjct: 1044 GSPSSSNETELQIDSYPSSEEIRRKN---NSEQKQLRRSRRLQQVSEEIA-IGAKKAHKP 1211
Query: 699 SDSGPEGSVFGVERNVLVHN-SQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSD 757
D E + V + + N C D ++ G + I S
Sbjct: 1212 DDQAEESCITEVVSELKLGNLPACAPDNVSTDKDQVLASCSFTGDERSLEVIPSSQDQDL 1391
Query: 758 DMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQS----PSKTVLHAASILT 813
++ L P + +Q+ L PQ+ PS H + T
Sbjct: 1392 ALSGKEGLQGEISQGSLGTVEVPDTAWDTQDSTSLFPADTPQNSKPGPSPHRNHCEIMET 1571
Query: 814 EEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYLRNIFRS 873
++ + + + +D R KNAS+ E EDSELD QYL+N F+
Sbjct: 1572 PKE------LLESSSSKNTESSVEDLRSLMKQEVKNASKTITEMEDSELDTQYLQNTFKR 1733
Query: 874 SKRQSFSLYPTP----MKACTTDDVASEKLNTSCPDQVEERNSKYLKTENLQEEKTTAEN 929
SKRQSF+L +P +K C S++ R + K EN + K
Sbjct: 1734 SKRQSFALCSSPRQEYVKTCAVPGAISQQ-------STVRRYQEKEKQENRESNKPVQPK 1892
Query: 930 LSSVCE--------KFETCESACVSPVSCFVSSAACVHTVE-NQDVSKVANHGNLTTLLR 980
+ V E K+ T E + + ++ S C E NQ +S+V +
Sbjct: 1893 PAVVIEKGKPGDHAKWSTREVSRLCHIASLNSGNDCEPIAEINQGISQVPDQNQ-----S 2057
Query: 981 ICAARNEDGN----RPQKGEQGSEKTL--STGIGVESKLRLSPVRSNRSQSDQSNTEEHA 1034
+ AR+ D + E+ E+T T +G ES +S+ S QSN+ E+
Sbjct: 2058 VSPARSSDSKTIYAKNFLEERLDEQTTCPETTMGNESL-----AQSSISLVSQSNSREYV 2222
Query: 1035 FQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTACQQNPAEFNCE 1091
++ + S E Q EK+E + + + ++ P QQ + NC+
Sbjct: 2223 --SNPIDLIISVGSSGEGTQAEKSE--NKESELNTPPKLKLMQPQVSQQTFPQNNCK 2381
>gb|AY057825.1| Sotalia fluviatilis BRCA1 (BRCA1) gene, partial cds
Length = 2794
Score = 136 bits (343), Expect = 2e-29
Identities = 215/936 (22%), Positives = 366/936 (38%), Gaps = 52/936 (5%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++L L S + R + K+ D PS E
Sbjct: 17 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQLVLGKSQQSRWAESKDTCNDRQTPSTEK 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ D KE +KP P E LN SIQ+VNEWF
Sbjct: 197 KVVLNA-DPLYGRKELNKQKPASSDSPR--DSQEFPWITLNSSIQRVNEWFSRSDEMLTS 367
Query: 410 XXXQNDHAEATDASGEGDISLSDKDSCI--SEKTNPIVDSVEFAVIERNKRWTKQTTYSI 467
++ E+ + D + SEK + + A+I +K +I
Sbjct: 368 YDSRDGAFESNTEVARAVEVPKEVDGYLGSSEKIDLMASDPHGALIHERVH-SKPVESNI 544
Query: 468 EDKIFGKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACIL 525
EDKIFGKTY+R N S I D I+ A+ E +E L S L
Sbjct: 545 EDKIFGKTYQRKTSLPNLSRIAEDLIIGASTVEPQITQERPLTKK----LKRKRRSTSGL 712
Query: 526 QPEDFIKKKDLEEADRCPQGIKSSLGDAEKE------KCDENSAVKENPLLEKRKGSTLA 579
PEDFIKK DL + P+ I E+ + + + ++K K + L
Sbjct: 713 HPEDFIKKVDLAVLPKTPEKIIEGTDQTEQNGHGINITSNGHETEMKGGYVQKEKNANLT 892
Query: 580 EFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLVDR 639
E E+ ++ AE +S S+ +LELN K+ KN R+ A+
Sbjct: 893 ESLEKESAFRTKAEPISSSISNMELELNIHSSKAPKNRLRRKSSTRNIHALELAVSRKPS 1072
Query: 640 NPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNS 699
P S +E + + S+ K + I + S
Sbjct: 1073 PPNSCSSSEEM-----KKKHSSQMPVRHGKKLQFMGDKEPTTGAKKSDKPHKQITKRLAS 1237
Query: 700 DSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSD-- 757
D+ PE ++ N+ V + C K Q+ ++ + + IQ+S+ D
Sbjct: 1238 DTYPELNL----TNIPVFFTHCSGSNKLQEFVNPSLQREES-----LGTIQVSNNTKDPK 1390
Query: 758 ----DMAKNRSFFNPTFSCQLSNFNSPSSKAGSQ------EGEMLGKLFLPQSPSKTVLH 807
K S +S P + G+Q E + LGK +P++ V
Sbjct: 1391 DLTLSRGKGLQIERAVESTSISLV--PDTDYGTQDSISLLEADTLGK--AKTAPNQHVSL 1558
Query: 808 AASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYL 867
A+I + ++ C ++D RN +DF+ + + ++E E+SELD QYL
Sbjct: 1559 CAAIESPKELIPGC---AKD----IRNDTEDFQNPLGHDVNHIQKASIEMEESELDTQYL 1717
Query: 868 RNIFRSSKRQSFSLYPTPMKACTTDDVASEKLN-------TSCPDQVEERNSKYLKTENL 920
+N+F+ SKRQ+F+L+ P K C T S L C + E + K +++
Sbjct: 1718 QNMFKVSKRQTFALFSNPEKECATVCAHSGSLREESPRVPLECRQKEENQGKSESKIKHM 1897
Query: 921 QEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQDVSKVANHG------N 974
+ TT + + + + + A SP + ++ HG
Sbjct: 1898 RAINTTVDFPVAGQKDKKPSDHAKRSPERVTRLCPSSQFRGNKTELIIANKHGISHNPYL 2077
Query: 975 LTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSNTEEHA 1034
+ +L I ++ + E+ E +S +E++ S V+S Q+N+ E
Sbjct: 2078 IPSLSPIRSSVKTICKKNLSEEKFEEPVMSPERAMENE---SIVQSTVRTISQNNSREST 2248
Query: 1035 FQRTGLNAVSETYFSSESNQV-----------EKAEVVDDKGLMQHFQPS---PMLCPTA 1080
F+ ++++E S +N+V E + D+ S ++ P
Sbjct: 2249 FKEVSSSSINEV--GSSTNEVGSSINEVGSSGENIQAKQDRNRGPKLSASLRLGLMQPEV 2422
Query: 1081 CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT 1140
+Q+ NC+L E K +G E +Q V+ S + LE+ +
Sbjct: 2423 YKQSLPVSNCQLPEIK--------RQGENEDTLQAVNEDFSPCLNPDNLEQPMGRSHASQ 2578
Query: 1141 DLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL ++D + ++F ++ ++ SAVF K
Sbjct: 2579 VCSETPDELL--NDDKIKESNFAESDIEERSAVFSK 2680
>gb|AF203747.1|AF203747 Tadarida brasiliensis Brca1 (Brca1) gene, partial cds
Length = 2793
Score = 136 bits (342), Expect = 2e-29
Identities = 224/936 (23%), Positives = 366/936 (38%), Gaps = 52/936 (5%)
Frame = +3
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVE 351
+AS L+++ +S L + M+VE+ + +K+++ L S + R + KE + D +
Sbjct: 39 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLAKSQQSRWAESKE------TCNDRQ 200
Query: 352 MCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXX 411
+L +P + P + +V + SIQKVNEWF
Sbjct: 201 TLSTEKRVVLNADPLNRRKEPPGSNYPRDSQDVPWITRSSSIQKVNEWFSRRDEILTTGG 380
Query: 412 XQNDHAEATDASGEGDISLSDKDSCISEKTNPIV----DSVEFAVIERNKRWTKQTTYSI 467
N E+ + G + + ++ S I D + + ER +K +I
Sbjct: 381 SHNGRFES-NVEVAGAVEVPNEVDGYSGSPEKIALMACDPPDALICERVS--SKPLESNI 551
Query: 468 EDKIFGKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACIL 525
EDKIFGKTY R N S I + I+ A+ E +E L N L
Sbjct: 552 EDKIFGKTYRRKASFPNLSHISENLIIGASAIEPQVTKECPLTNKLKRKRRTSS-----L 716
Query: 526 QPEDFIKKKDLEEADRCPQGIKSSLGDAEK--------EKCDENSAVKENPLLEKRKGST 577
PEDFIKK DL + + + E+ C EN + ++K K S
Sbjct: 717 HPEDFIKKVDLAVVQKTLEKVIEGTDQIEQNGHVMSITSNCHENKT--KGDYVQKEKNSN 890
Query: 578 LAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL- 636
E E+ + AE +S S+ +LELN K+ K K STR A+ L
Sbjct: 891 PTESLEKESAFTTKAEPISSSISNMELELNIHSSKAPKKNRLKRKS---STRHIYALELV 1061
Query: 637 VDRNPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMR 691
V+RNP + E I+S S+EE + + K
Sbjct: 1062 VNRNPSPPNHTELQIDSCSSSEEVKEKNSDQIPVRHSKKLQLMEGKEPATGAKKSNKSNE 1241
Query: 692 VIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLR-------KQQDILSYMSLADRNGADL 744
I + SD PE ++ + L ++S L+ ++++I + + +
Sbjct: 1242 QINKKLASDVFPELNLTNIP-GFLSNDSSSNKLKEFVNPNLQREEITENLGTVHMSNSTK 1418
Query: 745 EANGIQISSKNSDDMAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKT 804
+ + +S S + +RS + P + G+Q+ L + P K
Sbjct: 1419 DLKDLILSGGRS--LQTDRSMESTNI------LLVPETDYGTQDSISLLEPDTPGKAKKA 1574
Query: 805 VLHAASILTEEKRSWSCTVFSQDKGCC--SRNVPKDFRIGKSPMAKNASEFTMEAEDSEL 862
A + E K GC +RN +D + P + E+SEL
Sbjct: 1575 PNQYAGLCAEIKNXKELI-----HGCSNDNRNDREDIKDLLRPEVNHXXXXXXXXEESEL 1739
Query: 863 DMQYLRNIFRSSKRQSFSLYPTPMKACTTD-------DVASEKLNTSCPDQVEERNSKYL 915
D QYL+N F+ SKRQSF+L+ P K T S K+ C + E + K
Sbjct: 1740 DTQYLQNTFKVSKRQSFALFSNPEKEYATVYGHSRSLRKQSPKVTLECGQKEENQGEKES 1919
Query: 916 KTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQDVSKVANHGNL 975
+ + ++ TTA VCEK E E + S +S+ C Q N L
Sbjct: 1920 EIKYVRGVHTTA-GFPVVCEKDEKPEE--YAKCSIKGTSSLC------QPPQFRGNETEL 2072
Query: 976 TTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLR---LSPVRSNRSQSDQS---- 1028
T + +RN + KT++ E K +SP R+ R+++ S
Sbjct: 2073 TIANKPGISRNPYHIPCISPIRSFVKTINKKNLSEEKFEEHSVSPERAMRNENILSTVSP 2252
Query: 1029 ---NTEEHAFQRTGLNAVSETYFSS----ESNQVEKAEVVDDKG-LMQHFQPSPMLCPTA 1080
N E F+ ++ +E S+ S + +AE+ ++G + S ++ P
Sbjct: 2253 ISLNNRESTFKEGSSSSTNEVGSSTNEVGSSGENIQAELGRNRGSKINAMLRSGLMQPEV 2432
Query: 1081 CQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFT 1140
+ + + NCE E K +G E V+Q V+ S + + LE+S+
Sbjct: 2433 YKPSLSVSNCEHPEIK--------RQGENEGVVQAVNADFSPCQISDNLEQSMGSTPASQ 2588
Query: 1141 DLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL +D+ +E++SF + K+ SA+F K
Sbjct: 2589 VCSETPDDLL-NDDKIKENSSFAGSGIKERSAIFSK 2693
>gb|AF284018.1|AF284018 Felis catus BRCA1 gene, partial cds
Length = 2845
Score = 136 bits (342), Expect = 2e-29
Identities = 233/950 (24%), Positives = 387/950 (40%), Gaps = 67/950 (7%)
Frame = +2
Query: 294 ASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED- 349
AS L+++ +S L M+VE+ + +++++ + S + R + KE D PS E
Sbjct: 20 ASSLQHENSSLLLTKGRMNVEKAEFCNESKQPGVARSQQSRWAESKETCNDRQTPSTEKK 199
Query: 350 -VEMCEPMDDSLLEKE--PPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXX 406
V +P+ L K+ P + P + +V LN SIQKVNEWF
Sbjct: 200 VVLNADPLCRRKLSKQKSPCSDSPRDSQ--------DVPWITLNSSIQKVNEWFSRSDEM 355
Query: 407 XXXXXXQNDHAEATDASGEGDI-SLSDKDSCISEKTNPIVDSVEFAVIERNKR-WTKQTT 464
++ +E+ ++ ++ D S SEK + + A+I ++R TK
Sbjct: 356 LTSDDSHDEGSESNPGVAGAEVPNVVDGYSGSSEKIDLMASDPHDALICESERVHTKPVE 535
Query: 465 YSIEDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSA 522
+IEDKIFGKTY R N S D I+ A E + L N S
Sbjct: 536 SNIEDKIFGKTYRRKASLPNLSHTSEDLIIGACAIEPQITQAYPLTNK----TKRKRRST 703
Query: 523 CILQPEDFIKKKDLEEADRCPQGI---KSSLGDAEKEKCDENSAVK---ENPLLEKRKGS 576
L PEDFIKK DL + P+ + +G N+ + + ++K K +
Sbjct: 704 AGLHPEDFIKKVDLAIVQKTPEKLIEGTDRIGQNGHVMNRTNNGPENGTKGDYVQKEKNA 883
Query: 577 TLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL 636
E E+ ++ AE +S S+ + ELN+ ++ K K STR A+ L
Sbjct: 884 KPTESLEKESAFRTKAEPISSNISNMESELNSHSSRAPKENRLRRKS---STRHMRALEL 1054
Query: 637 -VDRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKE 695
V+RNP D E I+S S+EE K G + K
Sbjct: 1055 VVNRNPSPPDHTELQIDSCSSSEEMVKRKSSEQMLVRHSKTLQLVENKEPAPGAKKRNKP 1234
Query: 696 AKN------SDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGI 749
+K S++ PE ++ N+ + C Q+ ++ R + I
Sbjct: 1235 SKQINKRLASNTFPELNL----TNIPGVFTNCSSSNTLQEFVN--PGIQREELEESRGTI 1396
Query: 750 QISSKNSDDMA----KNRSFFNPTFSCQLSNFNSPSSKAGSQ------EGEMLGKLFLPQ 799
+S + D A RS S P + G+Q E + LGK
Sbjct: 1397 HVSDRTRDPKALVSSGGRSLQTERSVESTSISLVPDADYGTQDSISLLEADTLGK--AKT 1570
Query: 800 SPSKTVLHAASILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAED 859
+P++ V A+I ++ C S+D +RN + F + E ++E E+
Sbjct: 1571 APNQRVSLCAAIENPKEAIRGC---SKD----TRNGTESFTDPLRREDXHTQETSIEMEE 1729
Query: 860 SELDMQYLRNIFRSSKRQSFSLYP---TPMKACTTDDVASEKLNTSCP------DQVEER 910
+ELD Q+L N F+ SKRQSF+L+ P K C T S L P +Q EE
Sbjct: 1730 NELDTQWLYNTFKGSKRQSFALFSNPGNPEKECATAWARSTSLRKQSPKVALEYEQKEEN 1909
Query: 911 NSK-YLKTENLQEEKTTAENLSSVCEKFE------TCESACVSPV---SCFVSSAACVHT 960
K + +++Q + TA S+V +K E C V + S F + +
Sbjct: 1910 QGKNQSEIKHVQAVRATA-GFSAVSQKVEKPGDYAKCSIKGVPGLCQSSQFRGNETELFI 2086
Query: 961 VENQDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRS 1020
N D+SK N ++ L I ++ N + E+ ++++S V ++ S ++S
Sbjct: 2087 ANNHDISK--NPYHIPPLSPIRSSVNAVCKKNLSEEKFEQRSMSPERAVGNE---SVIQS 2251
Query: 1021 NRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVEKA---------EVVDDKGLMQHFQ 1071
+ Q+N E+ F+ ++V+E S +N+V + + + G + +
Sbjct: 2252 TVNTISQNNIRENTFKEVSSSSVNEV--GSSANEVGSSINEVGSSGENIQTELGRNRGPK 2425
Query: 1072 PSPML-----CPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVR 1126
S ML P +Q+ NC+ E K +G E V+Q+V+ S +
Sbjct: 2426 LSAMLRLGLMQPEVYEQSLPISNCKCPEMK--------RQGENEGVVQSVNADFSPCLIS 2581
Query: 1127 EALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
+ +E+ ++ SETP+ LL + D + + + K+ SAVF K
Sbjct: 2582 DNVEQPMESSRASQVCSETPNDLL--NGDEIKGKISFAESAKERSAVFGK 2725
>gb|AF284008.1|AF284008 Erinaceus europaeus BRCA1 gene, partial cds
Length = 2742
Score = 135 bits (341), Expect = 3e-29
Identities = 228/934 (24%), Positives = 381/934 (40%), Gaps = 55/934 (5%)
Frame = +1
Query: 298 KNDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVEDVEMCEP 355
+ ++S L +M+VE+ + K+++ L S + R + E D PS + + +
Sbjct: 1 RENSSLLLTKGKMNVEKAEFCSKSKQPGLARSQQSRWAENMETCNDRQTPSPD--KEVDL 174
Query: 356 MDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXXXQND 415
DSL E++ + + + ++S LN SIQKVNEW +
Sbjct: 175 NADSLYERKE-LNEQISSYSSSPKDSKDISWVALN-SIQKVNEWLSRSDELLTSDDSYDK 348
Query: 416 HAEA-TDASGEGDI-SLSDKDSCISEKTNPIVDSVEFAVIERNKR-WTKQTTYSIEDKIF 472
+++ T+ + ++ + D+ SEK N A+I + K +IEDKIF
Sbjct: 349 GSKSKTEVTVTTEVPNAIDRFFGSSEKINLTASDPHVALIREGEGVHFKPVKNNIEDKIF 528
Query: 473 GKTYERGRKS---NPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPED 529
GKTY GRK+ N S + D++ +E A+E L L PED
Sbjct: 529 GKTY--GRKASLLNLSHVTEDVI---IREPQVAKEPLLATKLKRKRRTDVG----LCPED 681
Query: 530 FIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVK------ENPLLEKRKGSTLAEFKE 583
FIKK D+ + P+ I G ++ N A ++ ++K K + AE +
Sbjct: 682 FIKKVDVAIVQKTPEKIIKRPGQLDQSDQVMNIATNGHETETKSDYVQKEKNANPAESPD 861
Query: 584 RGLQWKNAAEKVSGKCSDGQLELN-NSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRNPG 642
+ ++N E +S S+ +LELN +S + KN RH +V++N
Sbjct: 862 KESAFRNKPEPISSSISNMELELNVHSSKAPKKNKLRRKSSARHIHALEV---VVNKNSS 1032
Query: 643 SFDLAEPLINSYPSNEEPS--KADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNSD 700
E I+S SNEE KAD T+ + ++
Sbjct: 1033 PPSHTELQIDSCSSNEEMRGVKADQMPVRHSKQLPLIEDKEPATRAFSSSKSNEQISKQF 1212
Query: 701 SGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDDMA 760
G S + N+ + C K Q+ ++ + G + ++KN D+
Sbjct: 1213 VGETFSDLNL-TNIPGFLTSCSSSNKHQECINPNLQREVLGESRGTIQVCNNTKNPKDLI 1389
Query: 761 KN--------RSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKTVLHAASIL 812
+ RS +P + + +S S E + LGK ++P++ V +
Sbjct: 1390 VSGKRGLQIERSVESPVENTDYGSQDSIS----LLETDTLGK--AKKTPNQCVSLCVATE 1551
Query: 813 TEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEAEDSELDMQYLRNIFR 872
T ++ S SC S+D +RN + FR + E + E E+SELD QYL+N F+
Sbjct: 1552 TPKELSHSC---SKD----TRNDTEGFRDSLRCEVDHTQETSTELEESELDTQYLQNTFK 1710
Query: 873 SSKRQSFSLYPTP---MKACTTDDVASEKLN-------TSCPDQVEERNSKYLKTENLQE 922
SKR+SF+L+ +P KACT V S+ L C + E + K + + L
Sbjct: 1711 VSKRRSFALFSSPENSEKACTRGSVHSKSLRKQSPKVILDCEQKEENQGEKASEIKYLPS 1890
Query: 923 EKTTAENLSSVCEK-----FETCESACVS----PVSCFVSSAACVHTVENQDVSKVANHG 973
E TT VC K + C VS P S + +N + + +
Sbjct: 1891 EHTTT-GFPVVCYKDTSGDYAKCSVKGVSRHCQPSRFRGSEPELIVANKNLILQNLYHIP 2067
Query: 974 NLTTLL----RICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSN 1029
L T++ IC K E +LS V +K S ++S + Q+N
Sbjct: 2068 TLPTIMSSTKSIC-----------KKNLSEENSLSPERAVTNK---SIIQSTVNTISQTN 2205
Query: 1030 TEEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQP-------SPMLCPTACQ 1082
E+A + ++V++ S +N+V + L ++ P + ++ P +
Sbjct: 2206 ASENALKDVSSSSVND--MGSSTNEVGSSSENIQAKLCRNRGPRLNATLRASLMQPEVFE 2379
Query: 1083 QNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDL 1142
Q NC+ +E K +G E VIQTV+ + LE+ ++
Sbjct: 2380 QCLLMSNCKHSEMK--------RQGENEGVIQTVNIESDSCPRPDNLEQPVETSH---VC 2526
Query: 1143 SETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
SETPD LL +D++ +E+ SF + K+ SAVF K
Sbjct: 2527 SETPDDLL-NDDEMKENTSFTESGIKEQSAVFGK 2625
>gb|AF203746.1|AF203746 Myotis daubentoni Brca1 (Brca1) gene, partial cds
Length = 2812
Score = 135 bits (340), Expect = 4e-29
Identities = 224/958 (23%), Positives = 371/958 (38%), Gaps = 74/958 (7%)
Frame = +3
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ L S + R + KE D PS E
Sbjct: 39 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQQSRWAESKETCNDRQTPSTEK 218
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+L+ +P + P+ H +V + SIQKVNEWF
Sbjct: 219 --------RVILDADPLNGEKELPRSDHPRDSQDVPWITRSSSIQKVNEWFSRRDEILTS 374
Query: 410 XXXQNDHAEATDASGEGDISLSDKDSCISEKTNPIV----DSVEFAVIERNKRWTKQTTY 465
N +E+ +A G + ++++ S I D E + +K
Sbjct: 375 DGSHNGKSES-NAEVAGAVEVANEVDGYSGSPGKITLMAHDPHGALTCESERVHSKPVES 551
Query: 466 SIEDKIFGKTYER-GRKSNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSAC 523
+IEDKIFGKTY R N S I ++ I+ A+ E A+E L N S
Sbjct: 552 NIEDKIFGKTYRRKASLPNLSHITKNLIVGASAIEPQIAQECPLTNK----LKRKRRSTS 719
Query: 524 ILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVKEN------PLLEKRKGST 577
L PEDFIKK DL + P+ I E+ + N ++ ++K K +
Sbjct: 720 GLHPEDFIKKVDLAVVQKTPEEIIKGTDRIEQNGHEMNITNNDHENETKGDCVQKEKNAN 899
Query: 578 LAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL- 636
L E E+ + + AE +S S+ +LELN K+ K K STR A+ L
Sbjct: 900 LTESLEKESAFTSKAEPISSSISNMELELNVHSSKAPKKNRLKRKS---STRPIHALELV 1070
Query: 637 VDRNPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEA 696
V+RNP + E I+S S+EE + + I K + E
Sbjct: 1071 VNRNPSPSNHTELQIDSCSSSEEVKEKN---------------SDQIPVRHSKKLQLMEG 1205
Query: 697 KNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNS 756
K +G + S E+ ++ D +Q++ + + + + N +
Sbjct: 1206 KEPAAGAKKSNKSDEQ---INKKLASDAFLEQNLTNMPGVFTNGLSSNKLNEFVDPNLQR 1376
Query: 757 DDMAKNR---SFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKTVLHAASILT 813
++ +N N T + + S + E + +P++ T + S+L
Sbjct: 1377 EETEENLGAVQMSNSTKDLEDLTLSGGRSVQIDRSKESTNIVLVPETDYGT-QDSVSLLE 1553
Query: 814 EEKRSWSCTVFSQDKGCCS---------RNVPKDFRIGKSPM-------AKNASEFTMEA 857
+ + T +Q C+ R KD R + + E ++E
Sbjct: 1554 PDIPGKAKTAPNQCGDLCAAVKNPKELIRGCSKDIRNDREGFKDLLRCEVNHTQETSIEV 1733
Query: 858 EDSELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASE-------KLNTSCPDQVEER 910
E+SELD Q L+N F+ SKRQSF+L+ P K C T S+ K+ C + E +
Sbjct: 1734 EESELDTQELQNTFKVSKRQSFALFSNPEKECATAYAHSQSLRKQSPKVTLECGQKEENQ 1913
Query: 911 NSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSSAACVHTVENQDVSKVA 970
K K +++Q TA VCEK + + +H +Q
Sbjct: 1914 GKKESKIKHVQAVH-TAVGFPVVCEK-----DRKPGEYAKYSIKGTSMHCXSSQ------ 2057
Query: 971 NHGNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSP------------- 1017
GN T L ++ G P S + + + SK LS
Sbjct: 2058 FRGNKTEL----TITDKYGLSPNPYHIPSISPIKSFVKTVSKKNLSKEKFEEHLVSPERA 2225
Query: 1018 -----VRSNRSQSDQSNTEEHAFQRT-------GLNAVSETYFSSES-------NQVEKA 1058
++S S SN E AF+ + G ++++E S E+ N+ K
Sbjct: 2226 MGNENIQSTVSPISLSNIRESAFKESSSSSTNEGGSSINEVGSSGENIHAELDINKGSKL 2405
Query: 1059 EVVDDKGLMQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVST 1118
+ GLMQ P + + NC+ E K +G+ E ++Q V+
Sbjct: 2406 TAMLRLGLMQ---------PEVYKPSLPVSNCKHPEVK--------RQGDNEGLVQAVNA 2534
Query: 1119 GLSEFSVREALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
+ + LE+ + S TPD LL +D++ +E++ F + + SAVF K
Sbjct: 2535 DFPPCQISDNLEQPMGSSPVSQVCSATPDDLL-TDDEIKENSGFDESGIXERSAVFSK 2705
>gb|AF355796.1|AF355796 Echymipera kalubu BRCA1 gene, partial cds
Length = 2532
Score = 135 bits (339), Expect = 5e-29
Identities = 199/846 (23%), Positives = 327/846 (38%), Gaps = 50/846 (5%)
Frame = +3
Query: 301 TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEMCEPMDDSL 360
+S L N + M ++ + +K+++ L + + L + KE V + E + L
Sbjct: 21 SSLLSNIDRMTTKKAELCNKSKDPGLARNQQDCLGESKEISSTVKTPAAGEQHKLNAHHL 200
Query: 361 LEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXX----XXXXXXXXQNDH 416
EK+ K P+ P S L SIQKV+EW Q +
Sbjct: 201 CEKQELEVKSQHPESPKGSPRRCRSGTKLKSSIQKVSEWLSRSNDILNSDYSHERSQEQN 380
Query: 417 AEATDASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIEDKIFGKTY 476
AE A +G ++ +D +S ISEKT + + + V+E + ++ +IEDKIFGKTY
Sbjct: 381 AEIAIALEDGHLNTADGNSSISEKTXLVAXTTD--VLETSX--SRPAKSNIEDKIFGKTY 548
Query: 477 ER-GRKSNPSTILRDILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQPEDFIKKKD 535
R SN + + ++L T D+ L N LQPEDFI+K D
Sbjct: 549 RRKSXHSNLNYLTENLLVETIAPDSLIPPESLKNIKLKRKRKTISD---LQPEDFIRKTD 719
Query: 536 LEEADRCPQGIKSSLGDA-EKEKCDENSAVKENPLLEKRKGSTLAEFK----------ER 584
+ + + P+ ++ E+E+ D+ L +K G + E K E+
Sbjct: 720 VPVSHKTPEKKNPAVDQILEREQNDQVMNTANGHLKQKALGDHVKEVKDAQAAELFSTEK 899
Query: 585 GLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHLV-DRNPGS 643
++ E +G G+LELN K TK K S R A+ LV D+N GS
Sbjct: 900 ESTFRTRTEPKAGSIVHGELELNGRGAKMTKKDRLRKKP---SARIVRALELVADKNSGS 1070
Query: 644 FDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNSDSGP 703
+ AE I+SYPS++E K + + E + K + D
Sbjct: 1071 SNEAELQIDSYPSSDEIRKGN----NSEQKQIRRSRRLQLLSEEIAVGTKKAHEPYDQAE 1238
Query: 704 EGSVFGV----ERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDD- 758
E V V E + + + ++L+ S D +LE + SSK+ D
Sbjct: 1239 ERCVKKVFPELEMGTVSAGATDSLSTDRDEVLASCSFTDGEERNLE---VIPSSKDQDQD 1409
Query: 759 --MAKNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEEK 816
+++ L P + +Q+ L PQ+ S
Sbjct: 1410 LALSERERLQEKRTQGNLELLEVPDTYWETQDSTSLFPAETPQN---------SKAGPSP 1562
Query: 817 RSWSCTVFSQDKGCCSRNVPKDFRIGKSPM----AKNASEFTMEAEDSELDMQYLRNIFR 872
+C + K K+ G + K SE + EDSELD QYL+N F+
Sbjct: 1563 HRSNCEIMESSKELFDAYSSKNTDSGTEGLIRQEIKYGSETSSVMEDSELDTQYLQNTFK 1742
Query: 873 SSKRQSFSLYPTP----MKACTTDDVASEKLNTSCPDQVEERNSKYLKTENLQEEKTTAE 928
SKRQ+F+L P +K C+ S + + + D + K + +E +
Sbjct: 1743 RSKRQTFALCSNPKQEQIKPCSVPRAVSHQSSDNASDCGGQEKEK----QGNRESNKPGQ 1910
Query: 929 NLSSVCEKFETC--ESACVSPVSCFVSSAA-------------CVHTV-ENQDVSKVANH 972
S+V TC E P C + + C + + Q +S+V N
Sbjct: 1911 LASAVRSSAATCQTERKPGDPDKCSATGVSRLCHIAPLQEGNDCEYIAGKKQGISQVPNQ 2090
Query: 973 GNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVES--KLRLSPVRSNRSQSDQSNT 1030
+ R ++ N K T +G ES + LSPV Q+N+
Sbjct: 2091 KQSVSPTRSSVSKIYTKNL-LKDRLEQTTCPETVMGNESLGQSSLSPV-------SQNNS 2246
Query: 1031 EEHAFQRTGLNAVSETYFSSESNQVEKAEVVDDKGLMQHFQPSPMLCPTACQQNPAEFNC 1090
E+ + T LN S E ++ EK ++ + + + ++ P CQ + ++ NC
Sbjct: 2247 REYISKATDLNRFISRDSSGEDSRAEKGKIKESE--LNTPTKFKLVQPQVCQLSFSQDNC 2420
Query: 1091 ELTEKK 1096
+ ++K
Sbjct: 2421 KEPKRK 2438
>gb|AY057829.1| Rousettus amplexicaudatus BRCA1 (BRCA1) gene, partial cds
Length = 2755
Score = 134 bits (338), Expect = 7e-29
Identities = 235/965 (24%), Positives = 368/965 (37%), Gaps = 88/965 (9%)
Frame = +3
Query: 300 DTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEMCEPMDDS 359
+ S L + M+VE+T +K+++ L S + R VE E C S
Sbjct: 3 ENSLLYTKDRMNVEKTDFCNKSKQPGLARSQQNRW------------VETKETCNDRQTS 146
Query: 360 LLEKEPPVEK-PLQPKI------PHCPTL----NEVSTKGLNQSIQKVNEWFXXXXXXXX 408
EK+ + PL +I P C ++S N SIQKVNEWF
Sbjct: 147 STEKKVVLNADPLNGRIELNKQKPPCSDSPRDSQDISWITRNSSIQKVNEWFSRRDEILT 326
Query: 409 XXXXQNDHAEATDASGEGDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIE 468
+ +E+ ++ D S SEK + A+I + K SIE
Sbjct: 327 SDVSPDGRSESNVVEVPNEV---DGYSGASEKIALKANDPHGALICERVHY-KLVESSIE 494
Query: 469 DKIFGKTYER-GRKSNPSTILRDILP-ATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQ 526
DKIFGKTY R N S I +++ A+ E +E L N L
Sbjct: 495 DKIFGKTYHRKASLPNLSHITENLITGASAIEPQITQEYPLTNKLKRKRRTTSG----LH 662
Query: 527 PEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSA------VKENPLLEKRKGSTLAE 580
PEDFIKK DL + P+ I E+ NS + ++K+K + L E
Sbjct: 663 PEDFIKKIDLAIVQKTPENIIEGTDQIEQNGHVMNSTNNGHENETKGDYVQKKKNTNLTE 842
Query: 581 FKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDR 639
E+ +K AE + S+ +LELN K+ K K STR A+ L V+R
Sbjct: 843 SLEKESAFKTKAEPIRSSISNMELELNIHSSKALKXXXXXRKS---STRHIHALELVVNR 1013
Query: 640 NPGSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNS 699
NP + E I+S S+EE + K + +M V K
Sbjct: 1014 NPSPPNHTELQIDSCSSSEELKE----------------------KNSDQMPVRHSKKLQ 1127
Query: 700 DSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQISSKNSDDM 759
+ S G ++N H + K L ++ L N NG SS N
Sbjct: 1128 FVEDKESETGAKKNNKPHETINKRLASD----AFPELNITNIPGFFTNG---SSSN---- 1274
Query: 760 AKNRSFFNPTF----------SCQLSN---------FNSPSSKAGSQEGEMLGKLFLPQS 800
K F NP+ + Q+SN F + E G L +P++
Sbjct: 1275 -KLPEFVNPSLRREEIKENLGTIQVSNSTKDPKILIFGEGRGSQTDRSTESTGILLVPET 1451
Query: 801 PSKTVLHAASILTEEKRSWSCTVFSQDKGCCSR-NVPKDFRIGKSPMAKN---------- 849
T + S+L + + T +Q C+ P++ G S +N
Sbjct: 1452 DYGT-QDSISLLEPDIPGKAKTAPNQHADLCAAIENPRELIHGCSEDTRNDTDPLRHEVN 1628
Query: 850 -ASEFTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTP---MKACTTDDVASEKLNTSCP- 904
+ +E E++ELD QYL+N F+ SKRQSF+L+ P K C T S L P
Sbjct: 1629 YTQKTNIEIEENELDTQYLQNTFKVSKRQSFALFSNPGNLEKECATGYAHSRSLRKHSPK 1808
Query: 905 -----DQVEERNSKYLKTENLQEEKTTAENLSSVCEK---------------FETCESAC 944
++ E + K +++Q TT VCEK C+S
Sbjct: 1809 VTLECERKENQGKKESDVKHVQAVYTTV-GFPVVCEKDRKPGDYAKYGIKEVSRLCQSFQ 1985
Query: 945 VSPVSCFVSSAACVHTVEN----QDVSKVANHGNLTTLLRICAARNEDGNRPQKGEQGSE 1000
++ A + +N +S + + T + + E+ + + G+E
Sbjct: 1986 FRGNEMELTIANKLRISQNPYHMPSISPIKSSVKTTCKKNLSEEKFEERSISPERTIGNE 2165
Query: 1001 KTLSTGIGVESKLRLSPVRSNRSQSDQSNTEEHAFQRTGL--NAVSETYFSSESNQVE-- 1056
+ + +G S+ + +R + + S++ A T ++V+E S E+ Q E
Sbjct: 2166 TIIQSTVGTISQ---NNIRESTFKEGSSSSIYEAGSSTNELGSSVNEVGSSGENIQAELS 2336
Query: 1057 -----KAEVVDDKGLMQHFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEER 1111
K V GLMQ P +Q+ +C+ E K +G E
Sbjct: 2337 RNRGPKLNAVLQLGLMQ---------PEVYKQS---LSCKHPEIK--------RQGENEG 2456
Query: 1112 VIQTVSTGLSEFSVREALEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTS 1171
V+Q V+ +S+ + + LE + + SETPD +L +D+ +E+ F + K+ S
Sbjct: 2457 VVQAVNADVSQRQISDNLEPPMGNSNASQVCSETPDDML-NDDKIKENIGFDEGDIKERS 2633
Query: 1172 AVFVK 1176
AVF K
Sbjct: 2634 AVFSK 2648
>gb|AF284007.1|AF284007 Scalopus aquaticus BRCA1 gene, partial cds
Length = 2833
Score = 131 bits (330), Expect = 6e-28
Identities = 218/946 (23%), Positives = 380/946 (40%), Gaps = 62/946 (6%)
Frame = +2
Query: 293 NASPLKNDTSFLKNAEE-MDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVE 351
+AS L+++ S L E M+VE+ + +K+++ DL S + R + KE + +
Sbjct: 17 HASLLQHENSSLLLTENRMNVEKAEFCNKSKQPDLAKSQQNRWAESKETCNDRQTSSPEK 196
Query: 352 MCEPMDDSLL-EKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXX 410
+P D + KE +KP P V+ LN SI+KVNEWF
Sbjct: 197 RVDPNADPMYGRKELNKQKPPCSDSPR--NSQGVAWITLNSSIRKVNEWFSRSDEILTSD 370
Query: 411 XXQNDHAEAT-DASGEGDI-SLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIE 468
++ + + + +GE ++ + D S SEK + + + + + TK +IE
Sbjct: 371 ESRDGESPSNIEMTGEVEVPNTVDGFSGSSEKIDLMASDPPALMCKSERVRTKPVESNIE 550
Query: 469 DKIFGKTYERGRK-SNPSTILRDILPATK-KEDAAAEEGCLNNSXXXXXXXXXXSACILQ 526
DKIFGKTY R N S + ++ T E +E N L
Sbjct: 551 DKIFGKTYRRKTSLPNLSHVAEYLITGTSVTEPQIVQERPFTNRLKRKRRTLPG----LC 718
Query: 527 PEDFIKKKDLEEADRCPQGIKSSLGDAEKEKCDENSAVKEN--------PLLEKRKGSTL 578
PEDFIKK DLE P+ K S G + ++ + V N ++K K +
Sbjct: 719 PEDFIKKVDLEVVQNTPE--KISAGTDQMDQSGQVMDVAYNGHGNETKRDYVQKEKSANP 892
Query: 579 AEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-V 637
AE E+ ++ A+ +S S+ +LELN K+ K K ST+ A+ L V
Sbjct: 893 AESLEKESTFRIKAKPISSSISNMELELNIHSSKAPKKNRLRRKS---STKHIHALELVV 1063
Query: 638 DRNPGSFDLAEPLINSYPSNEEPSKADC------XXXXXXXXXXXXXXXXXITKETGKMR 691
RNP + E I+S S+EE + + + K +
Sbjct: 1064 KRNPSPPNHTELQIDSCSSSEEMKERNSNQMPVRHSKRLQLMEDKDPATEAVKSNKPKEQ 1243
Query: 692 VIKEAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQI 751
+ + A SD+ PE + V + ++S L L + G + +N
Sbjct: 1244 IKRFA--SDTLPELNSTHVPGFLSNYSSSNNLEEFSNPSLQREELEENLGTNQVSNN--- 1408
Query: 752 SSKNSDDMAKNRSFFNPTFSCQLSNFN-SPSSKAGSQEGEMLGKLFLPQSPSKTVLHAAS 810
+ D + + S + +N + P + GSQ+ L ++ + K AS
Sbjct: 1409 TKDPKDPILSGQRDLQAERSGESTNISLVPETDFGSQDSVSLLEIDILGKAKKVPNQCAS 1588
Query: 811 ILTEEKRSWSCTVFSQDKGCCSRNVPKDFRIGKSPM---AKNASEFTMEAEDSELDMQYL 867
+ T+ + S + CS++ D + K P+ + E +E E++ELD QYL
Sbjct: 1589 LCTKIENS------KELIHSCSKDTRNDTQGCKDPLKYEVNHTQEIRIEMEENELDTQYL 1750
Query: 868 RNIFRSSKRQSFSL----------YPTPMKACTTDDVASEKLNTSCPDQVEERNSKYLKT 917
++ F++SKRQSF+L YP + + K+ C + E + K KT
Sbjct: 1751 QSTFKASKRQSFALSSHPGNSEKKYPPVSAPSRSLKRQTPKITLECELKEENQGKKESKT 1930
Query: 918 ENLQEEKTTAENLSSVCEKFETCESA--CVSPVSCFVSSAACVHTVENQDVSKVANH--- 972
E++Q A+ L+ C+ + +SA + VS S+ N+ VAN
Sbjct: 1931 EHVQAVHRIAD-LTLACQNDKPHDSAKCSIKGVSRLCQSS---QFRGNETEVIVANKRLI 2098
Query: 973 ----------GNLTTLLRICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNR 1022
++ + ++ +N + ++ E+ G +ES +
Sbjct: 2099 LQNPYLIPPLSSIQSSVKSACKKNLAEEKLEEHSWSPERETGNGSIIESTV--------- 2251
Query: 1023 SQSDQSNTEEHAFQRTGLNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHF 1070
S+ Q+N E+AF+ ++++E S+ S + +AE+ +G +
Sbjct: 2252 SRVSQNNNRENAFKEVSSSSINEVGSSTNEADSSINEVGSSGENIQAELDGSRGPKLNAM 2431
Query: 1071 QPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALE 1130
++ P +Q+ + C+ E K +G E ++Q V T + + E
Sbjct: 2432 LRLGLMQPEVYKQSLPKSTCKHPEVK--------RQGENEGIVQAVHTDFFPCLISDNQE 2587
Query: 1131 ESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
+ + SETP+ LL +D + + SF + K+ SAVF K
Sbjct: 2588 QPMGSSHASQVCSETPEDLL-NDEIKDNNISFADSGIKERSAVFSK 2722
>gb|AF284023.1|AF284023 Procavia capensis BRCA1 gene, partial cds
Length = 2757
Score = 131 bits (329), Expect = 7e-28
Identities = 229/941 (24%), Positives = 365/941 (38%), Gaps = 65/941 (6%)
Frame = +2
Query: 294 ASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVEM 352
AS L+++ +S L + MDVE+ + K+++ L S + R + E + +
Sbjct: 20 ASSLQHENSSLLLTKDRMDVEKAEFCSKSKQPGLARSQQSRWAESTETCNGRQILRTEKK 199
Query: 353 CEPMDDSLL-EKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXX 411
E D L +KE +KP P ++ LN SIQKVNEWF
Sbjct: 200 VETNADPLYGKKEGNKQKP--PCSESRTDTQDIPWVTLNNSIQKVNEWFSRSDNLS---- 361
Query: 412 XQNDHAEATDASGE--GDISLSDKDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIED 469
+ +E ++ +G+ G + L + S I ER K +I+D
Sbjct: 362 --DSPSEGSELNGKVAGPVKLPGEVHRYSSFPENIDLMASGPPGERIP--CKPPKSNIKD 529
Query: 470 KIFGKTYER-GRKSNPSTILRDILP-ATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY+R G + S I D++ A + A E L N L P
Sbjct: 530 KIFGKTYQRKGSLPHLSHITEDLVKGAIATQPQIAREHPLTNKLQHKRRTSG-----LHP 694
Query: 528 EDFIKKKDLEEADRCPQGIKSSLGDAEKE-------KCDENSAVKENPLLEKRKGSTLAE 580
EDFIKK DL + + I E+ + K++ +L+++ G+
Sbjct: 695 EDFIKKADLTVVQKASEKINQETDKVEQSGQVINIGNGGHENETKDDYVLKEKNGNPAES 874
Query: 581 FKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHSTRTRCAIHL-VDR 639
K+ + +K AE +S S+ +LELN + KS K K S+R A+ L V+R
Sbjct: 875 LKKESV-FKTKAEPISNSISNMELELNTHNSKSLKKNRLRKKS---SSRHVHALELVVNR 1042
Query: 640 NPGSFDLAEPLINSYPSNEEPSKAD-----CXXXXXXXXXXXXXXXXXITKETGKMRVIK 694
NP S I+S+ +EE K K I
Sbjct: 1043 NPSSPPHTGLQIDSWSGSEEMKKTSSEQKPVRHNINLQLMKNQETTTGAKKSNKPKEQIN 1222
Query: 695 EAKNSDSGPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEAN--GIQIS 752
+ S+ PE ++ + V +S D L G ++E N +Q+S
Sbjct: 1223 KRHTSNPYPELNLTSTAGFITVCSS--------SDNLQEPVNPSLQGEEIEENLATVQMS 1378
Query: 753 --SKNSDDMAKNRSFFNPTFSCQLSNFNS--PSSKAGSQEGEMLGKLFLPQSPSKTVLHA 808
+K +D+ N T S S P + G+Q+ +
Sbjct: 1379 NTAKEPEDLELNGGRVLQTKRSVESTSTSVIPDADCGAQD-------------------S 1501
Query: 809 ASILTEEKRSWSCTVFSQDKGCCS---------RNVPKDFRIG----KSPM---AKNASE 852
S+L + + T +Q G CS PKD R K P+ E
Sbjct: 1502 ISLLEADTLGKAKTAPNQGAGQCSAIENPNELIHGSPKDTRNDIEGFKDPLRCKVNPIQE 1681
Query: 853 FTMEAEDSELDMQYLRNIFRSSKRQSFSLYPTPMKACTTDDVASEKLNTSCP----DQVE 908
+E +++ELD QY+++ F+ SKR SF+L+ P K C T S+ L P + E
Sbjct: 1682 ICVEMDENELDTQYIQSTFKVSKRHSFALFSNPEKECATSYTHSKSLRKENPKVTLQRGE 1861
Query: 909 ERNSKYLKTENLQEEKTTAENLSSVCEKFETCESACVSPVSCFVSS-AACVHTVENQDVS 967
E ++ K ++ TTA + VC++ ++ +C V H+ + +
Sbjct: 1862 EEENQGNKESKIKHVHTTA-SCPEVCQE----DTKPSDRTNCSVKGLPRLCHSSQFK--- 2017
Query: 968 KVANHGNLTTLLRICAARNED---GNRPQKGEQGSE--KTLSTGIGVESKLRL------- 1015
+ L T A+N D + P + S+ K LS E K+ L
Sbjct: 2018 --GSESELITEGEHGIAQNPDQMPSSSPIRSSVNSKCNKNLSEERFKEHKILLERTTGNE 2191
Query: 1016 SPVRSNRSQSDQSNTEEHAFQRTGLNAVSETYFSSESNQVE-------KAEVVDDKGLMQ 1068
+ V+S S Q N A + T ++++E SSE+ Q E + V G+MQ
Sbjct: 2192 TIVQSTVSTGSQDNIRGSASKETSSSSINEVGSSSENIQAEISRNREPRLNAVLRLGVMQ 2371
Query: 1069 HFQPSPMLCPTACQQNPAEFNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREA 1128
P +Q+ + NC+ E K +G E V+Q VST S + E
Sbjct: 2372 ---------PEVYKQSLSISNCKQPEIK--------KRGENEGVVQAVSTDFSACPISEN 2500
Query: 1129 LEESLKGHSDFTDLSETPDGLLCSDNDTEESASFYVTNRKD 1169
LE+ ++ S+TPD LL D++ + F ++ KD
Sbjct: 2501 LEQPVRSSHTSQVCSQTPDNLL-DDDEIKGKTDFAGSSIKD 2620
>gb|AY057828.1| Sorex araneus BRCA1 (BRCA1) gene, partial cds
Length = 2709
Score = 131 bits (329), Expect = 7e-28
Identities = 227/929 (24%), Positives = 364/929 (38%), Gaps = 45/929 (4%)
Frame = +1
Query: 293 NASPLK-NDTSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKEKDICVPSVEDVE 351
+AS L+ ++S L + M VE+ +C HK+++ L S + R + KEK S + +
Sbjct: 1 HASSLQPENSSLLLTEDRMYVEKAECCHKSKQPSLAKSQQNRWTESKEKYDRQTSSAEKK 180
Query: 352 MCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXXXX 411
+ D K+P K P E++ N SIQKVN+WF
Sbjct: 181 VDLSADPLSGGKQP--NKQELPCSGSSRESQEMTWITQNSSIQKVNDWFSRSDDVLSSDD 354
Query: 412 XQNDHAEATDASGEGDISLSD--KDSCISEKTNPIVDSVEFAVIERNKRWTKQTTYSIED 469
DA E + +++ + S +++ + + ++ E + +K +IED
Sbjct: 355 FH-------DAGLESNTEVAEIIEISSTADEFSGSSEQIDLTASESRRTLSKPVESNIED 513
Query: 470 KIFGKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXXXXXXXXXSACILQP 527
KIFGKTY R N + I D IL ++ E A E N L P
Sbjct: 514 KIFGKTYRRKTSFPNLNRITEDVILGSSILEPHIAPEQPFTNKLKRKRSMTSS----LCP 681
Query: 528 EDFIKKKDLEEADRCPQGI--KSSLGDAEKEKCD---ENSAVKENPLLEKRKGSTLAEFK 582
EDFIKK DL + P+ + KS D + + + + +K K + E
Sbjct: 682 EDFIKKGDLAVVQKTPEKVIEKSDQTDQNGQVMNITTNGESETKIDYAQKGKNTNPTESS 861
Query: 583 ERGLQWKNAAEKVSGKCSDGQLELN-NSDQKSTKNACSTAKGCRHSTRTRCAIHLVDRNP 641
E+ +++ E VS S+ +LELN +S + S KN RH +V +NP
Sbjct: 862 EKESAFRHKGECVSSSISNMELELNIHSSKTSKKNRLRRKSSSRHIHALEL---VVSKNP 1032
Query: 642 GSFDLAEPLINSYPSNEEPSKADCXXXXXXXXXXXXXXXXXITKETGKMRVIKEAKNSDS 701
+ E I+S S EE + + TG + ++ + ++
Sbjct: 1033 SPHNHMELQIDSCSSGEEVKEKNFDQIPVRHSKKPQLTEDK-ELSTGTINSNEQNEQINT 1209
Query: 702 GPEGSVFGVERNVLVHNSQCKDLRKQQDILSYMSLADRNGADLEANGIQ-ISSKNSDDMA 760
G +F E N++ S+ L++ + L + G E+N + + +
Sbjct: 1210 RISGDIFS-ELNLVNDCSRANKLQEFVNPSPQKELEENIGTIQESNHPKDLRLSRGKGLQ 1386
Query: 761 KNRSFFNPTFSCQLSNFNSPSSKAGSQEGEMLGKLFLPQSPSKTVLHAASILTEEKRSWS 820
R N S +P + GSQ+ L + P KTVL I +K +
Sbjct: 1387 IERYVENTGISL------APDTDYGSQDSISLLDTDTLEKP-KTVLD-QQIENPKKLTRG 1542
Query: 821 CTVFSQDKGCCSRNVPKDFRIGKSPMAKNASEFTMEA--EDSELDMQYLRNIFRSSKRQS 878
CT K C RN +D K T+EA E+SELD QYL N F++S R S
Sbjct: 1543 CT-----KDC--RNDTED----SKGQLKYEDNHTVEARVEESELDTQYLHNTFKASNRHS 1689
Query: 879 FSLYPTP---MKACTTDDVASEKL-------NTSCPDQVEERNSKYLKTENLQEEKTTAE 928
FSL P + C+T S L C + E + K ++LQ TT
Sbjct: 1690 FSLLSNPGNSGRECSTVFAHSGSLRKQSPKGTLGCEQKEESCGPEESKIKHLQPIHTTL- 1866
Query: 929 NLSSVCEKFETCESA--CVSPVSCFVSS-------AACVHTVENQDVSKVANHGNLTTLL 979
+ C K + A + VS F +S A H N +V + + +
Sbjct: 1867 SFPGTCPKSSPGDYAKCSIKGVSRFCNSSEFRGSEAELTHLNLNLQNPQVPSFSPNRSSV 2046
Query: 980 RICAARNEDGNRPQKGEQGSEKTLSTGIGVESKLRLSPVRSNRSQSDQSNTEEHAFQRTG 1039
+ +N + SEK + G + N + N E+AF+
Sbjct: 2047 KTLCKKNLPEEMFEDRSPSSEKAMGNG----------SIIQNTVSTISQNNRENAFKEVS 2196
Query: 1040 LNAVSETYFSS-----------ESNQVEKAEVVDDKG-LMQHFQPSPMLCPTACQQNPAE 1087
+ ++E FS+ S + KAE+ ++G + S ++ P +
Sbjct: 2197 SSTINEVGFSTNEIGSSVNEIGSSGENVKAELGGNRGHKLNTILRSVLMQPEVNNLSLPV 2376
Query: 1088 FNCELTEKKIITRERSLVKGNEERVIQTVSTGLSEFSVREALEESLKGHSDFTDLSETPD 1147
+C E K R L E V+Q V+T S V + EE + S+ + SETPD
Sbjct: 2377 GSCTHPEIK-----RQL---ENEGVVQAVTTDFSPCLVSDNPEELM--GSNASSCSETPD 2526
Query: 1148 GLLCSDNDTEESASFYVTNRKDTSAVFVK 1176
L+ ++D + SF ++ K+ SAVF K
Sbjct: 2527 DLV--NDDEIKEISFAESDIKEQSAVFGK 2607
>gb|AF284017.1|AF284017 Megaptera novaeangliae BRCA1 gene, partial cds
Length = 2821
Score = 130 bits (327), Expect = 1e-27
Identities = 225/952 (23%), Positives = 377/952 (38%), Gaps = 68/952 (7%)
Frame = +2
Query: 293 NASPLKND-TSFLKNAEEMDVEETQCSHKNQELDLEDSSEGRLDKIKE--KDICVPSVED 349
+AS L+++ +S L + M+VE+ + +K+++ S + R + K+ D PS E
Sbjct: 17 HASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPVSAKSQQSRWAESKDTCNDRQTPSTEK 196
Query: 350 VEMCEPMDDSLLEKEPPVEKPLQPKIPHCPTLNEVSTKGLNQSIQKVNEWFXXXXXXXXX 409
+ D KE +KP P E +N IQKVNEWF
Sbjct: 197 KVVLNA-DPLYGRKELNKQKPACSDSPR--DSQEFPWITVNSRIQKVNEWFS-------- 343
Query: 410 XXXQNDHAEATDASGEGDISLSDKDSCI-------------SEKTNPIVDSVEFAVIERN 456
++D ++ S +G + + +C SEK + + A+I +
Sbjct: 344 ---RSDEMLTSNDSRDGGFESNTEVACAVEVPKEVDGYLGSSEKIDLMASDPHGALIRES 514
Query: 457 KR-WTKQTTYSIEDKIFGKTYERGRK-SNPSTILRD-ILPATKKEDAAAEEGCLNNSXXX 513
+R +K +IEDKIFGKTY R N S I I+ A+ E +E L N
Sbjct: 515 ERVHSKPVESNIEDKIFGKTYRRKASLPNLSHIAEHLIIGASTVEPQITQERPLTNKLKR 694
Query: 514 XXXXXXXSACILQPEDFIKKKDLEEADRCPQGIKSSLGDAEKE------KCDENSAVKEN 567
L PEDFIKK DL + P+ I E+ + ++
Sbjct: 695 KRRSTSG----LHPEDFIKKVDLAVIAKTPEKITEGTDQTEQNGHGMHVTSNGPETEMKD 862
Query: 568 PLLEKRKGSTLAEFKERGLQWKNAAEKVSGKCSDGQLELNNSDQKSTKNACSTAKGCRHS 627
++K K + L E E+ ++ E +S