TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(425 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,171,752 sequences; 566,364,212 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
gb|L28099.1|CHKZPAMED Gallus gallus sonic hedgehog mRNA, co... 818 0.0
ref|NM_000193.1| Homo sapiens sonic hedgehog homolog (Droso... 662 0.0
gb|L38518.1|HUMSHH Homo sapiens sonic hedgehog protein (SHH... 662 0.0
emb|X76290.1|MMSHH M.musculus (C57BL/6J) Shh mRNA 657 0.0
ref|NM_017221.1| Rattus norvegicus sonic hedgehog homolog, ... 655 0.0
gb|L27340.1|RATVHH1X Rat (vhh-1) mRNA, complete cds 655 0.0
dbj|D63339.1|NEWSPA Cynops pyrrhogaster sonic hedgehog mRNA... 598 e-169
gb|AF003532.1|AF003532 Pleurodeles waltl sonic hedgehog-rel... 587 e-166
gb|L39213.1|XELXSH Xenopus laevis morphogen (sonic hedgehog... 568 e-160
gb|U26314.1|XLU26314 Xenopus laevis sonic hedgehog mRNA, co... 567 e-159
dbj|AB029748.1|AB029748 Paralichthys olivaceus shh mRNA for... 560 e-157
gb|L35248.1|XELVHH1A Xenopus laevis (clone fhh-4) hedgehog ... 557 e-157
emb|Z35669.1|BRSONHP B.rerio shh mRNA for sonic hedgehog pr... 555 e-156
gb|L27585.1|ZEFVHH1A Brachydanio rerio (vhh-1) mRNA, comple... 555 e-156
gb|U30711.1|DRU30711 Danio rerio sonic hedgehog (shh), comp... 554 e-156
gb|U30710.1|DRU30710 Danio rerio tiggy-winkle hedgehog (twh... 542 e-152
gb|AF047466.1|AF047466 Notophthalmus viridescens hedgehog s... 478 e-133
gb|U58511.1|GGU58511 Gallus gallus indian hedgehog protein ... 476 e-132
gb|U26404.1|XLU26404 Xenopus laevis banded hedgehog protein... 472 e-131
ref|NM_010544.1| Mus musculus Indian hedgehog homolog, (Dro... 465 e-129
gb|U85610.1|MMU85610 Mus musculus Indian hedgehog protein (... 465 e-129
emb|Y08426.1|DRECHIDNA D.rerio mRNA for EHH protein 457 e-127
ref|NM_007857.1| Mus musculus desert hedgehog homolog, (Dro... 441 e-122
emb|X76292.1|MMDHH M.musculus (129/Su) Dhh gene 441 e-122
ref|XM_090366.1| Homo sapiens similar to DESERT HEDGEHOG PR... 439 e-121
gb|U26349.1|XLU26349 Xenopus laevis cephalic hedgehog prote... 416 e-114
emb|AJ245882.2|BBE245882 Branchiostoma belcheri partial mRN... 410 e-112
gb|U26350.1|XLU26350 Xenopus laevis hedgehog protein 4 (hh4... 409 e-112
emb|Y13858.1|BFAMPHIHH Branchiostoma floridae mRNA for Amph... 408 e-112
emb|X76291.1|MMIHH M.musculus (C57BL/6J) Ihh mRNA 389 e-106
dbj|AB044709.1|AB044709 Gryllus bimaculatus mRNA for hedgeh... 389 e-106
gb|S66384.1|S66384 hh=segment polarity gene hedgehog [Droso... 343 2e-92
gb|L02793.1|DROHHA Drosophila melanogaster hedgehog protein... 343 2e-92
ref|XM_082291.1| hedgehog, mRNA 343 2e-92
gb|L38517.1|HUMIHH Homo sapiens indian hedgehog protein (IH... 340 1e-91
ref|NM_079735.1| Drosophila melanogaster hedgehog (hh), mRNA 339 3e-91
gb|L05404.1|DROHHB Drosophila melanogaster hedgehog protein... 339 3e-91
gb|AF059606.1|AF059606 Lytechinus variegatus hedgehog mRNA,... 335 4e-90
ref|XM_050846.2| Homo sapiens Indian hedgehog homolog (Dros... 333 2e-89
gb|AF162915.1|AF162915 Rattus norvegicus sonic hedgehog pro... 323 2e-86
gb|AC078834.5| Homo sapiens BAC clone RP11-69O3 from 7, com... 303 2e-80
gb|AC002484.1|AC002484 Human cosmid clone LL157A05 from 7q3... 303 2e-80
gb|AF031480.1|AF031480 Ambystoma mexicanum sonic hedgehog m... 288 7e-76
gb|AF144100.1|AF144100 Bos taurus sonic hedgehog mRNA, part... 287 1e-75
gb|AF113403.1|AF113403 Eleutherodactylus coqui sonic hedgeh... 279 4e-73
gb|AF056116.1|AF056116 Fugu rubripes serine/threonine kinas... 259 4e-67
gb|AF162914.1|AF162914 Rattus norvegicus indian hedgehog pr... 258 1e-66
gb|AF022882.1|CCSHH2 Coturnix coturnix sonic hedgehog (shh)... 258 1e-66
gb|AF117742.1|AF117742 Junonia coenia hedgehog protein (hh)... 243 2e-62
gb|AF124382.1|AF124382 Danio rerio sonic hedgehog protein (... 209 3e-52
dbj|AB007129.1|AB007129 Oryzias latipes mRNA for shh, parti... 209 5e-52
gb|AF148226.1|AF148226 Rattus norvegicus desert hedgehog pr... 202 4e-50
dbj|AB018075.1|AB010092S2 Homo sapiens hedgehog gene, exon 2 182 4e-44
gb|AC097468.3| Homo sapiens chromosome 2 clone RP11-33O4, c... 182 4e-44
gb|U59748.1|HSU59748 Human desert hedgehog (hDHH) mRNA, par... 177 2e-42
dbj|AB010993.2|AB010581S2 Homo sapiens hedgehog gene, exon 2 165 8e-39
dbj|AB010994.2|AB010581S3 Homo sapiens hedgehog gene, exon ... 164 2e-38
gb|AF071236.1|AF071236 Danio rerio desert hedgehog protein ... 157 2e-36
emb|Z97019.1|OLZ97019 Oryzias latipes mRNA for sonic hedgehog 155 7e-36
dbj|AB018076.2|AB010092S3 Homo sapiens hedgehog gene, exon ... 154 1e-35
gb|AC008200.4|AC008200 Drosophila melanogaster, chromosome ... 152 7e-35
emb|Z11840.1|DMHDGHOGD D.melanogaster hedgehog gene DNA 152 7e-35
gb|AE003742.2|AE003742 Drosophila melanogaster genomic scaf... 152 7e-35
gb|AC008365.3|AC008365 Drosophila melanogaster, chromosome ... 152 7e-35
dbj|AB010092.1|AB010092S1 Homo sapiens hedgehog gene, exon 1 140 2e-31
gb|AF275308.1|AF275308 Rana catesbeiana sonic hedgehog (Shh... 135 9e-30
dbj|AB030474.1|AB030474 Oryzias latipes shh gene for sonic ... 132 6e-29
dbj|AB030473.1|AB030473 Oryzias latipes shh gene for sonic ... 132 6e-29
gb|U51354.1|RHU51354 Rasbora heteromorpha sonic hedgehog (s... 131 1e-28
gb|U51355.1|REU51355 Rasbora elegans sonic hedgehog (shh) g... 131 1e-28
gb|U51349.1|TAU51349 Tanichthys albonubes sonic hedgehog (s... 130 3e-28
gb|U51352.1|PTU51352 Puntius tetrazona sonic hedgehog (shh)... 130 3e-28
gb|U51353.1|PCU51353 Puntius conchonius sonic hedgehog (shh... 130 3e-28
gb|U51351.1|DRU51351 Danio rerio sonic hedgehog (shh) gene,... 130 3e-28
gb|U51345.1|DPU51345 Devario pathirana sonic hedgehog (shh)... 130 3e-28
gb|U51342.1|DPU51342 Danio pulcher sonic hedgehog (shh) gen... 130 3e-28
gb|U51346.1|DMU51346 Devario malabaricus sonic hedgehog (sh... 130 3e-28
gb|U51340.1|DKU51340 Danio kerri sonic hedgehog (shh) gene,... 130 3e-28
gb|U51339.1|DFU51339 Danio frankei sonic hedgehog (shh) gen... 130 3e-28
gb|U51350.1|DDU51350 Devario devario sonic hedgehog (shh) g... 130 3e-28
gb|U51348.1|DCU51348 Danio cf. tweediei sonic hedgehog (shh... 130 3e-28
gb|U51347.1|DAU51347 Danio aff. albolineatus sonic hedgehog... 130 3e-28
gb|U51344.1|DAU51344 Devario aequipinnatus sonic hedgehog (... 130 3e-28
gb|U51356.1|CAU51356 Carassius auratus sonic hedgehog (shh)... 130 3e-28
gb|U51343.1|RPU51343 Rasbora paviei sonic hedgehog (shh) ge... 129 4e-28
gb|U51341.1|ACU51341 Amblypharyngodon chulabhornae sonic he... 129 7e-28
emb|Z62881.1|HS74G11F H.sapiens CpG island DNA genomic Mse1... 126 4e-27
dbj|AB018401.1|AB018401 Homo sapiens hedgehog gene, exon 1 124 2e-26
dbj|AB010581.2|AB010581S1 Homo sapiens hedgehog gene, exon 1 122 5e-26
dbj|AB048729.1|AB048729 Homo sapiens gene for desert hedgeh... 122 8e-26
emb|AJ011384.1|HVU011384 Hydra vulgaris hedgehog gene, partial 119 5e-25
gb|U51362.1|RPU51362 Rasbora paviei sonic hedgehog gene, ex... 117 2e-24
gb|U51374.1|REU51374 Rasbora elegans sonic hedgehog gene, e... 117 2e-24
gb|U51371.1|PTU51371 Puntius tetrazona sonic hedgehog gene,... 117 2e-24
gb|U51375.1|CAU51375 Carassius auratus sonic hedgehog gene,... 117 2e-24
gb|U51360.1|ACU51360 Amblypharyngodon chulabhornae sonic he... 117 2e-24
gb|U51385.1|REU51385 Rasbora elegans b hedgehog gene, exon ... 117 2e-24
gb|U51384.1|PTU51384 Puntius tetrazona b hedgehog gene, exo... 117 2e-24
gb|U51377.1|DPU51377 Danio pulcher b hedgehog gene, exon 2,... 117 2e-24
gb|U51376.1|DKU51376 Danio kerri b hedgehog gene, exon 2, p... 117 2e-24
gb|U51382.1|DDU51382 Devario devario b hedgehog gene, exon ... 117 2e-24
gb|U51381.1|DCU51381 Danio cf. tweediei b hedgehog gene, ex... 117 2e-24
gb|U51386.1|CAU51386 Carassius auratus b hedgehog gene, exo... 117 2e-24
gb|U51368.1|TAU51368 Tanichthys albonubes sonic hedgehog ge... 117 3e-24
gb|U51372.1|RHU51372 Rasbora heteromorpha sonic hedgehog ge... 116 4e-24
gb|AF359590.1|AF359590 Oryzias latipes indian hedgehog prot... 115 6e-24
gb|U51358.1|PCU51358 Pseudorasbora cf. parva sonic hedgehog... 115 6e-24
gb|U51370.1|DRU51370 Danio rerio sonic hedgehog gene, exon ... 115 6e-24
gb|U51364.1|DPU51364 Devario pathirana sonic hedgehog gene,... 115 6e-24
gb|U51361.1|DPU51361 Danio pulcher sonic hedgehog gene, exo... 115 6e-24
gb|U51365.1|DMU51365 Devario malabaricus sonic hedgehog gen... 115 6e-24
gb|U51359.1|DKU51359 Danio kerri sonic hedgehog gene, exon ... 115 6e-24
gb|U51357.1|DFU51357 Danio frankei sonic hedgehog gene, exo... 115 6e-24
gb|U51369.1|DDU51369 Devario devario sonic hedgehog gene, e... 115 6e-24
gb|U51363.1|DCU51363 Devario cf. aequipinnatus sonic hedgeh... 115 6e-24
gb|U51367.1|DAU51367 Danio aff. tweediei sonic hedgehog gen... 115 6e-24
gb|U51366.1|DAU51366 Danio aff. albolineatus sonic hedgehog... 115 6e-24
gb|U51388.1|DRU51388 Danio rerio a hedgehog gene, exon 2, p... 115 8e-24
gb|U51387.1|DKU51387 Danio kerri a hedgehog gene, exon 2, p... 115 8e-24
gb|U51383.1|RHU51383 Rasbora heteromorpha b hedgehog gene, ... 115 8e-24
gb|U51380.1|DMU51380 Devario malabaricus b hedgehog gene, e... 115 8e-24
gb|U51378.1|RPU51378 Rasbora paviei b hedgehog gene, exon 2... 115 1e-23
gb|U51379.1|DPU51379 Devario pathirana b hedgehog gene, exo... 115 1e-23
gb|U51373.1|PCU51373 Puntius conchonius sonic hedgehog gene... 114 2e-23
gb|U51389.1|PTU51389 Puntius tetrazona a hedgehog gene, exo... 112 6e-23
gb|U68238.1|PPU68238 Pseudorasbora parva tiggy-winkle hedge... 111 1e-22
gb|U68236.1|PTU68236 Puntius tetrazona tiggy-winkle hedgeho... 110 2e-22
gb|U68240.1|DPU68240 Devario pathirana tiggy-winkle hedgeho... 110 2e-22
gb|U68239.1|DKU68239 Danio kerri tiggy-winkle hedgehog gene... 110 2e-22
gb|U68241.1|CAU68241 Carassius auratus tiggy-winkle hedgeho... 110 2e-22
emb|Z57700.1|HS190D9R H.sapiens CpG island DNA genomic Mse1... 81 7e-22
gb|U68237.1|DFU68237 Danio frankei tiggy-winkle hedgehog ge... 108 9e-22
gb|AF022881.1|CCSHH1 Coturnix coturnix sonic hedgehog (shh)... 101 1e-19
ref|XM_098035.1| Homo sapiens LOC151297 (LOC151297), mRNA 100 4e-19
gb|L05405.1|DROHHC Drosophila melanogaster hedgehog protein... 99 1e-18
ref|NM_076196.1| Caenorhabditis elegans 59 1e-06
gb|AF175209.1|AF175209 Rattus norvegicus Indian hedgehog pr... 57 4e-06
ref|NM_063178.1| warthog gene 56 7e-06
gb|U61235.1|CEU61235 Caenorhabditis elegans ZK protein mRNA... 56 7e-06
gb|U61288.1|CEU61288 Caenorhabditis elegans CE mRNA, partia... 52 8e-05
emb|Z68008.1|CER08B4 Caenorhabditis elegans cosmid R08B4, c... 49 7e-04
ref|NM_074402.1| Hint module 49 0.001
ref|NM_063324.1| hedgehog-like protein 48 0.002
ref|NM_075522.1| Hint module 47 0.004
gb|AC084464.1|AC084464 Caenorhabditis briggsae cosmid CB038... 44 0.028
emb|Z81560.1|CEK02E2 Caenorhabditis elegans cosmid K02E2, c... 44 0.037
gb|U88183.1|CELZK377 Caenorhabditis elegans cosmid ZK377 40 0.31
emb|Z81142.1|CEZK1037 Caenorhabditis elegans cosmid ZK1037,... 39 1.2
emb|Z49968.1|CEM110 Caenorhabditis elegans cosmid M110, com... 37 3.5
dbj|D50651.1|D50651 Rhodocyclus tenuis pufL and pufM genes ... 36 7.7
>gb|L28099.1|CHKZPAMED Gallus gallus sonic hedgehog mRNA, complete cds
Length = 1567
Score = 818 bits (2112), Expect = 0.0
Identities = 404/425 (95%), Positives = 404/425 (95%)
Frame = +2
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 60
MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
Sbjct: 227 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 406
Query: 61 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 120
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
Sbjct: 407 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 586
Query: 121 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 180
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
Sbjct: 587 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 766
Query: 181 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSD 240
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSD
Sbjct: 767 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSD 946
Query: 241 FLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNV 300
FLTFLDRMDSSRKLFYVIETRQPR PQHNQSEATGSTSGQALFASNV
Sbjct: 947 FLTFLDRMDSSRKLFYVIETRQPRARLLLTAAHLLFVAPQHNQSEATGSTSGQALFASNV 1126
Query: 301 KPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHS 360
KPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHS
Sbjct: 1127KPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHS 1306
Query: 361 WAHWAFAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGM 420
WAHWAFAPFRLAQGLLAALCPDGAIP GIHWYSRLLYRIGSWVLDGDALHPLGM
Sbjct: 1307WAHWAFAPFRLAQGLLAALCPDGAIPTAATTTTGIHWYSRLLYRIGSWVLDGDALHPLGM 1486
Query: 421 VAPAS 425
VAPAS
Sbjct: 1487VAPAS 1501
>ref|NM_000193.1| Homo sapiens sonic hedgehog homolog (Drosophila) (SHH), mRNA
Length = 1576
Score = 662 bits (1709), Expect = 0.0
Identities = 343/465 (73%), Positives = 368/465 (78%), Gaps = 40/465 (8%)
Frame = +2
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 60
M EMLLL R LL+ + +LLV SGL CGPGRG GKRRHPKKLTPLAYKQFIPNVAEKTLG
Sbjct: 143 MGEMLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLG 322
Query: 61 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 120
ASGRYEGKI+RNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
Sbjct: 323 ASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 502
Query: 121 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 180
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
Sbjct: 503 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 682
Query: 181 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSD 240
KAHIHCSVKAENSVAAKSGGCFPGSATVHLE GGTKLVKDLSPGDRVLAAD GRLLYSD
Sbjct: 683 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSD 862
Query: 241 FLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQ-------SEATGSTSG- 292
FLTFLDR D ++K+FYVIETR+PR P ++ S +G SG
Sbjct: 863 FLTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGG 1042
Query: 293 ----QALFASNVKPGQRVYVLGE--GGQQLLPASVHSVSLREEASGAYAPLTAQGTILIN 346
+ALFAS V+PGQRVYV+ E G ++LLPA+VHSV+L EEA+GAYAPLTAQGTILIN
Sbjct: 1043ALGPRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILIN 1222
Query: 347 RVLASCYAVIEEHSWAHWAFAPFRLAQGLLAALCP------------------------- 381
RVLASCYAVIEEHSWAH AFAPFRLA LLAAL P
Sbjct: 1223RVLASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTA 1402
Query: 382 -DGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
A GIHWYS+LLY+IG+W+LD +ALHPLGM +S
Sbjct: 1403PGAADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS 1537
>gb|L38518.1|HUMSHH Homo sapiens sonic hedgehog protein (SHH) mRNA, complete cds
Length = 1576
Score = 662 bits (1709), Expect = 0.0
Identities = 343/465 (73%), Positives = 368/465 (78%), Gaps = 40/465 (8%)
Frame = +2
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 60
M EMLLL R LL+ + +LLV SGL CGPGRG GKRRHPKKLTPLAYKQFIPNVAEKTLG
Sbjct: 143 MGEMLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLG 322
Query: 61 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 120
ASGRYEGKI+RNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
Sbjct: 323 ASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 502
Query: 121 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 180
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
Sbjct: 503 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 682
Query: 181 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSD 240
KAHIHCSVKAENSVAAKSGGCFPGSATVHLE GGTKLVKDLSPGDRVLAAD GRLLYSD
Sbjct: 683 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSD 862
Query: 241 FLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQ-------SEATGSTSG- 292
FLTFLDR D ++K+FYVIETR+PR P ++ S +G SG
Sbjct: 863 FLTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGG 1042
Query: 293 ----QALFASNVKPGQRVYVLGE--GGQQLLPASVHSVSLREEASGAYAPLTAQGTILIN 346
+ALFAS V+PGQRVYV+ E G ++LLPA+VHSV+L EEA+GAYAPLTAQGTILIN
Sbjct: 1043ALGPRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILIN 1222
Query: 347 RVLASCYAVIEEHSWAHWAFAPFRLAQGLLAALCP------------------------- 381
RVLASCYAVIEEHSWAH AFAPFRLA LLAAL P
Sbjct: 1223RVLASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTA 1402
Query: 382 -DGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
A GIHWYS+LLY+IG+W+LD +ALHPLGM +S
Sbjct: 1403PGAADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS 1537
>emb|X76290.1|MMSHH M.musculus (C57BL/6J) Shh mRNA
Length = 1314
Score = 657 bits (1694), Expect = 0.0
Identities = 337/439 (76%), Positives = 358/439 (80%), Gaps = 17/439 (3%)
Frame = +1
Query: 4 MLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASG 63
+LLL R LV +LLV GL CGPGRG GKRRHPKKLTPLAYKQFIPNVAEKTLGASG
Sbjct: 4 LLLLARCFLVILASSLLVCPGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLGASG 183
Query: 64 RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV 123
RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
Sbjct: 184 RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV 363
Query: 124 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH 183
KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH
Sbjct: 364 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH 543
Query: 184 IHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLT 243
IHCSVKAENSVAAKSGGCFPGSATVHLE GGTKLVKDL PGDRVLAAD GRLLYSDFLT
Sbjct: 544 IHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLRPGDRVLAADDQGRLLYSDFLT 723
Query: 244 FLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPG 303
FLDR + ++K+FYVIET +PR P HN S T S ALFAS V+PG
Sbjct: 724 FLDRDEGAKKVFYVIETLEPRERLLLTAAHLLFVAP-HNDSGPTPGPS--ALFASRVRPG 894
Query: 304 QRVYVLGE--GGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSW 361
QRVYV+ E G ++LLPA+VHSV+LREE +GAYAPLTA GTILINRVLASCYAVIEEHSW
Sbjct: 895 QRVYVVAERGGDRRLLPAAVHSVTLREEEAGAYAPLTAHGTILINRVLASCYAVIEEHSW 1074
Query: 362 AHWAFAPFRLAQGLLAALCP-------DGAIPXXXXX--------XXGIHWYSRLLYRIG 406
AH AFAPFRLA LLAAL P G+IP GIHWYS+LLY IG
Sbjct: 1075AHRAFAPFRLAHALLAALAPARTDGGGGGSIPAAQSATEARGAEPTAGIHWYSQLLYHIG 1254
Query: 407 SWVLDGDALHPLGMVAPAS 425
+W+LD + +HPLGM +S
Sbjct: 1255TWLLDSETMHPLGMAVKSS 1311
>ref|NM_017221.1| Rattus norvegicus sonic hedgehog homolog, (Drosophila) (Shh), mRNA
Length = 1715
Score = 655 bits (1690), Expect = 0.0
Identities = 337/439 (76%), Positives = 358/439 (80%), Gaps = 17/439 (3%)
Frame = +3
Query: 4 MLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASG 63
+LLL R LV +LLV GL CGPGRG GKR+HPKKLTPLAYKQFIPNVAEKTLGASG
Sbjct: 318 LLLLARCFLVALASSLLVCPGLACGPGRGFGKRQHPKKLTPLAYKQFIPNVAEKTLGASG 497
Query: 64 RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV 123
RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
Sbjct: 498 RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV 677
Query: 124 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH 183
KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA
Sbjct: 678 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAR 857
Query: 184 IHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLT 243
IHCSVKAENSVAAKS GCFPGSATVHLE GGTKLVKDLSPGDRVLAAD GRLLYSDFLT
Sbjct: 858 IHCSVKAENSVAAKSDGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLT 1037
Query: 244 FLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPG 303
FLDR + ++K+FYVIETR+PR P HN S T S LFAS V+PG
Sbjct: 1038FLDRDEGAKKVFYVIETREPRERLLLTAAHLLFVAP-HNDSGPTPGPS--PLFASRVRPG 1208
Query: 304 QRVYVLGE--GGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSW 361
QRVYV+ E G ++LLPA+VHSV+LREEA+GAYAPLTA GTILINRVLASCYAVIEEHSW
Sbjct: 1209QRVYVVAERGGDRRLLPAAVHSVTLREEAAGAYAPLTADGTILINRVLASCYAVIEEHSW 1388
Query: 362 AHWAFAPFRLAQGLLAALCP-------DGAIPXXXXXX--------XGIHWYSRLLYRIG 406
AH AFAPFRLA LLAAL P G+IP GIHWYS+LLY IG
Sbjct: 1389AHRAFAPFRLAHALLAALAPARTDGGGGGSIPAPQSVAEARGAGPPAGIHWYSQLLYHIG 1568
Query: 407 SWVLDGDALHPLGMVAPAS 425
+W+LD + LHPLGM +S
Sbjct: 1569TWLLDSETLHPLGMAVKSS 1625
>gb|L27340.1|RATVHH1X Rat (vhh-1) mRNA, complete cds
Length = 1715
Score = 655 bits (1690), Expect = 0.0
Identities = 337/439 (76%), Positives = 358/439 (80%), Gaps = 17/439 (3%)
Frame = +3
Query: 4 MLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASG 63
+LLL R LV +LLV GL CGPGRG GKR+HPKKLTPLAYKQFIPNVAEKTLGASG
Sbjct: 318 LLLLARCFLVALASSLLVCPGLACGPGRGFGKRQHPKKLTPLAYKQFIPNVAEKTLGASG 497
Query: 64 RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV 123
RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
Sbjct: 498 RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV 677
Query: 124 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH 183
KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA
Sbjct: 678 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAR 857
Query: 184 IHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLT 243
IHCSVKAENSVAAKS GCFPGSATVHLE GGTKLVKDLSPGDRVLAAD GRLLYSDFLT
Sbjct: 858 IHCSVKAENSVAAKSDGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLT 1037
Query: 244 FLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPG 303
FLDR + ++K+FYVIETR+PR P HN S T S LFAS V+PG
Sbjct: 1038FLDRDEGAKKVFYVIETREPRERLLLTAAHLLFVAP-HNDSGPTPGPS--PLFASRVRPG 1208
Query: 304 QRVYVLGE--GGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSW 361
QRVYV+ E G ++LLPA+VHSV+LREEA+GAYAPLTA GTILINRVLASCYAVIEEHSW
Sbjct: 1209QRVYVVAERGGDRRLLPAAVHSVTLREEAAGAYAPLTADGTILINRVLASCYAVIEEHSW 1388
Query: 362 AHWAFAPFRLAQGLLAALCP-------DGAIPXXXXXX--------XGIHWYSRLLYRIG 406
AH AFAPFRLA LLAAL P G+IP GIHWYS+LLY IG
Sbjct: 1389AHRAFAPFRLAHALLAALAPARTDGGGGGSIPAPQSVAEARGAGPPAGIHWYSQLLYHIG 1568
Query: 407 SWVLDGDALHPLGMVAPAS 425
+W+LD + LHPLGM +S
Sbjct: 1569TWLLDSETLHPLGMAVKSS 1625
>dbj|D63339.1|NEWSPA Cynops pyrrhogaster sonic hedgehog mRNA for secretion protein
(sonic hedgehog protein), complete cds
Length = 1807
Score = 598 bits (1541), Expect = e-169
Identities = 304/433 (70%), Positives = 338/433 (77%), Gaps = 8/433 (1%)
Frame = +2
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 60
M EM+LL R+LL GFICALLV SGL+CGPGRGIG R+ KKLTPLAYKQF PNV EKTLG
Sbjct: 248 MDEMILLRRVLLAGFICALLVPSGLSCGPGRGIGTRKRFKKLTPLAYKQFTPNVPEKTLG 427
Query: 61 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 120
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
Sbjct: 428 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 607
Query: 121 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 180
PGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRDRSKYGMLARLA EAGFDWVY+ES
Sbjct: 608 PGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDRSKYGMLARLAAEAGFDWVYFES 787
Query: 181 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSD 240
KAHIHCSVKAENSVAAKSGGCFPGSATV LE G VKDL PGDRVLAAD G+L+YSD
Sbjct: 788 KAHIHCSVKAENSVAAKSGGCFPGSATVALEQGVRIPVKDLRPGDRVLAADGLGKLVYSD 967
Query: 241 FLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQS-----EATGSTSGQAL 295
FL F+D+ ++ RK+FYVIET + R N S GS +++
Sbjct: 968 FLLFMDKEETVRKVFYVIETSRERVRLTAAHLLFVGQAHPGNDSGGDFRSVFGSAGFRSM 1147
Query: 296 FASNVKPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAV 355
FAS+V+ G RV + G+ L A+V V L EEA+GAYAP+TA GT++I+RVLASCYAV
Sbjct: 1148FASSVRAGHRVLTVDREGRGLREATVERVYL-EEATGAYAPVTAHGTVVIDRVLASCYAV 1324
Query: 356 IEEHSWAHWAFAPFRLAQGLLAALCP---DGAIPXXXXXXXGIHWYSRLLYRIGSWVLDG 412
IEEHSWAHWAFAP R+ G+L+ P P G+HWYS +LYRIG+WVL
Sbjct: 1325IEEHSWAHWAFAPLRVGLGILSFFSPQDYSSHSPPAPSQSEGVHWYSEILYRIGTWVLQE 1504
Query: 413 DALHPLGMVAPAS 425
D +HPLGM A +S
Sbjct: 1505DTIHPLGMAAKSS 1543
>gb|AF003532.1|AF003532 Pleurodeles waltl sonic hedgehog-related protein (Pw-shh) mRNA,
complete cds
Length = 1549
Score = 587 bits (1512), Expect = e-166
Identities = 298/435 (68%), Positives = 337/435 (76%), Gaps = 10/435 (2%)
Frame = +1
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 60
M EM+LL R LL GFI LLV GL CGPGRGIG+RR P+KLTPLAYKQFIPNV+EKTLG
Sbjct: 202 MGEMILLRRDLLGGFISTLLVPLGLGCGPGRGIGQRRRPQKLTPLAYKQFIPNVSEKTLG 381
Query: 61 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 120
ASGRYE KITRNSERF+ELTPNYNPDIIFK EENTGADRLMTQRCKDKLN+LAISVMNQW
Sbjct: 382 ASGRYEVKITRNSERFQELTPNYNPDIIFKVEENTGADRLMTQRCKDKLNSLAISVMNQW 561
Query: 121 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 180
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVY+ES
Sbjct: 562 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYFES 741
Query: 181 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSD 240
KAHIHCSVKAENSVA KSGGCFPGSATV LE G VK L PG+RVLA D +GRL+YSD
Sbjct: 742 KAHIHCSVKAENSVAVKSGGCFPGSATVTLEQGVRIPVKGLKPGNRVLAVDVEGRLIYSD 921
Query: 241 FLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSG-------Q 293
FL F+D +++RK+FYVIET PR +H + + G+ +
Sbjct: 922 FLLFMDEEETARKVFYVIETSLPRERLRLTAAHLLFVAQEHPGNASAGNFRSKFGHRRFR 1101
Query: 294 ALFASNVKPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCY 353
++FAS+V+PG RV G+ L A+V V L EEA+GAYAP+TA GT++I+RVLASCY
Sbjct: 1102SMFASSVRPGHRVLTEDREGRGLREATVDRVYL-EEATGAYAPVTAHGTVVIDRVLASCY 1278
Query: 354 AVIEEHSWAHWAFAPFRLAQGLLAALCP---DGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
AVIEEHSWAHWAFAP R+ G+L+ P P G+HWYS +LYRIG+WVL
Sbjct: 1279AVIEEHSWAHWAFAPLRVGFGILSFFSPQDYSSHSPPAPSQAEGVHWYSEILYRIGTWVL 1458
Query: 411 DGDALHPLGMVAPAS 425
D +HPLGM A +S
Sbjct: 1459QADTIHPLGMAAKSS 1503
>gb|L39213.1|XELXSH Xenopus laevis morphogen (sonic hedgehog) mRNA, complete cds
Length = 2447
Score = 568 bits (1465), Expect = e-160
Identities = 291/452 (64%), Positives = 331/452 (72%), Gaps = 29/452 (6%)
Frame = +3
Query: 3 EMLLLTR-ILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGA 61
EML+ T+ +LL+ FIC L+ GL CGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGA
Sbjct: 198 EMLVATQSLLLLSFICTLVTPPGLACGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGA 377
Query: 62 SGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWP 121
SGRYEGKITRNS+ FKELTPNYNPDI+FKDEE+TGADRLMTQRCKDKLNALAISVMNQWP
Sbjct: 378 SGRYEGKITRNSDCFKELTPNYNPDIMFKDEESTGADRLMTQRCKDKLNALAISVMNQWP 557
Query: 122 GVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESK 181
GVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRDRSKYGML RLAVEAGFDWVYYESK
Sbjct: 558 GVKLRVTEGWDEDGHHLEESLHYEGRAVDITTSDRDRSKYGMLGRLAVEAGFDWVYYESK 737
Query: 182 AHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDF 241
AHIHCSVKAENSVAAKSGGCFP A V +E GGTK VKDL PGDRVL++D G LLYSDF
Sbjct: 738 AHIHCSVKAENSVAAKSGGCFPAGARVMVEFGGTKAVKDLRPGDRVLSSDPQGNLLYSDF 917
Query: 242 LTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVK 301
L F+D+ +KLFYVIET Q + Q++ G+ S +++FASN++
Sbjct: 918 LMFIDQERDVKKLFYVIETSQRKIRLTAAHLLFVA------QTKVNGTRSFKSVFASNIQ 1079
Query: 302 PGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSW 361
PG +Y L V V L EE +GAYAPLTA GT++I++VLASCYAVIEEH+W
Sbjct: 1080PGDLIYTADPKTMTLKAVKVEKVDL-EEDTGAYAPLTAHGTVVIDQVLASCYAVIEEHTW 1256
Query: 362 AHWAFAPFRLAQGLLAALCPDGAIP----------------------------XXXXXXX 393
AH AFAP R L + + P + P
Sbjct: 1257AHLAFAPLRFGMSLSSYIYPRDSSPPSGLQPHHQVDLQSHHQVDLQSHHQVDLQSHHQLE 1436
Query: 394 GIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
GIHWYS+LLY+IG+W+LD ++LHPLGM +S
Sbjct: 1437GIHWYSQLLYQIGTWLLDSNSLHPLGMATKSS 1532
>gb|U26314.1|XLU26314 Xenopus laevis sonic hedgehog mRNA, complete cds
Length = 1335
Score = 567 bits (1460), Expect = e-159
Identities = 290/451 (64%), Positives = 330/451 (72%), Gaps = 29/451 (6%)
Frame = +1
Query: 4 MLLLTR-ILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGAS 62
ML+ T+ +LL+ FIC L+ GL CGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGAS
Sbjct: 1 MLVATQSLLLLSFICTLVTPPGLACGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGAS 180
Query: 63 GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPG 122
GRYEGKITRNS+ FKELTPNYNPDI+FKDEE+TGADRLMTQRCKDKLNALAISVMNQWPG
Sbjct: 181 GRYEGKITRNSDCFKELTPNYNPDIMFKDEESTGADRLMTQRCKDKLNALAISVMNQWPG 360
Query: 123 VKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 182
VKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRDRSKYGML RLAVEAGFDWVYYESKA
Sbjct: 361 VKLRVTEGWDEDGHHLEESLHYEGRAVDITTSDRDRSKYGMLGRLAVEAGFDWVYYESKA 540
Query: 183 HIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFL 242
HIHCSVKAENSVAAKSGGCFP A V +E GGTK VKDL PGDRVL++D G LLYSDFL
Sbjct: 541 HIHCSVKAENSVAAKSGGCFPAGARVMVEFGGTKAVKDLRPGDRVLSSDPQGNLLYSDFL 720
Query: 243 TFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKP 302
F+D+ +KLFYVIET Q + Q++ G+ S +++FASN++P
Sbjct: 721 MFIDQERDVKKLFYVIETSQRKIRLTAAHLLFVA------QTKVNGTRSFKSVFASNIQP 882
Query: 303 GQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWA 362
G +Y L V V L EE +GAYAPLTA GT++I++VLASCYAVIEEH+WA
Sbjct: 883 GDLIYTADPKTMTLKAVKVEKVDL-EEDTGAYAPLTAHGTVVIDQVLASCYAVIEEHTWA 1059
Query: 363 HWAFAPFRLAQGLLAALCPDGAIP----------------------------XXXXXXXG 394
H AFAP R L + + P + P G
Sbjct: 1060HLAFAPLRFGMSLSSYIYPRDSSPPSGLQPHHQVDLQSHHQVDLQSHHQVDLQSHHQLEG 1239
Query: 395 IHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
IHWYS+LLY+IG+W+LD ++LHPLGM +S
Sbjct: 1240IHWYSQLLYQIGTWLLDSNSLHPLGMATKSS 1332
>dbj|AB029748.1|AB029748 Paralichthys olivaceus shh mRNA for sonic hedgehog, complete cds
Length = 1718
Score = 560 bits (1442), Expect = e-157
Identities = 279/418 (66%), Positives = 329/418 (77%)
Frame = +1
Query: 3 EMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGAS 62
+MLL TRI+L G IC LVSSG+ CGPGRG G+RRHPKKLTPLAYKQFIPNVAEKTLGAS
Sbjct: 151 KMLLWTRIVLAGVICLSLVSSGMGCGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGAS 330
Query: 63 GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPG 122
GRYEGKITRNSERFKELTPNYN DIIFKDEENTGADRLMTQRCKDKLN+LAISVMNQWPG
Sbjct: 331 GRYEGKITRNSERFKELTPNYNTDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNQWPG 510
Query: 123 VKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 182
VKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGFDWVYYESKA
Sbjct: 511 VKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKA 690
Query: 183 HIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFL 242
HIHCSVKAENSVAAKSGGCFPGS+TV L+ G K VK L GDRVLAADA G+ +Y+DF+
Sbjct: 691 HIHCSVKAENSVAAKSGGCFPGSSTVTLQDGTKKPVKALQTGDRVLAADAHGQPVYTDFI 870
Query: 243 TFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKP 302
F+D+ ++R+LFYVIET + H+ S A+FAS V+P
Sbjct: 871 MFIDQDSTTRRLFYVIETDSGQKITLTAAHLLFVG---HSNSTERAHRGMSAVFASQVRP 1041
Query: 303 GQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWA 362
GQ V+VL ++L P +V + +E G++AP+TAQGT+++++VLASCYAVI++H A
Sbjct: 1042GQTVFVL--DAERLQPVTVKRI-YTQEHEGSFAPVTAQGTVVVDQVLASCYAVIQDHELA 1212
Query: 363 HWAFAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGM 420
HWA AP RLA + + L + P G+HWYS++LY++G+W+LD ++HPLGM
Sbjct: 1213HWALAPVRLAHWVSSLLF--SSQPQASAQKDGVHWYSKILYQLGTWLLDSHSIHPLGM 1380
>gb|L35248.1|XELVHH1A Xenopus laevis (clone fhh-4) hedgehog protein (vhh-1) mRNA,
complete cds
Length = 1546
Score = 557 bits (1435), Expect = e-157
Identities = 286/453 (63%), Positives = 324/453 (71%), Gaps = 30/453 (6%)
Frame = +2
Query: 3 EMLLLTRIL--LVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 60
EML+ L L+ FIC L+ GL CGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
Sbjct: 203 EMLVANSNLCWLLSFICTLVTPPGLACGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 382
Query: 61 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 120
ASGRYEGKITRNS+ FKELTPNYNPDI+FKDEE+TGADRLMTQRCKDKLNALAISVMNQW
Sbjct: 383 ASGRYEGKITRNSDCFKELTPNYNPDIMFKDEESTGADRLMTQRCKDKLNALAISVMNQW 562
Query: 121 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 180
PGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRDRSKYGML RLAVEAGFDWVYYES
Sbjct: 563 PGVKLRVTEGWDEDGHHLEESLHYEGRAVDITTSDRDRSKYGMLGRLAVEAGFDWVYYES 742
Query: 181 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSD 240
KAHIHCSVKAENSVAAKSGGCFP A V +E GGTK VKDL PGDRVL++D G LLYSD
Sbjct: 743 KAHIHCSVKAENSVAAKSGGCFPAGARVMVEFGGTKAVKDLRPGDRVLSSDPQGNLLYSD 922
Query: 241 FLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNV 300
FL F+D+ +KLFYVIET Q + Q++ G+ S +++FASN+
Sbjct: 923 FLMFIDQERDVKKLFYVIETSQRKIRLTAAHLLFVA------QTKVNGTRSFKSVFASNI 1084
Query: 301 KPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHS 360
+PG +Y L + E +GAYAPLTA GT++I++VLASCYAVIEEH+
Sbjct: 1085QPGDLIYTAESQDHDLEGRGKWRRLILREDTGAYAPLTAHGTVVIDQVLASCYAVIEEHT 1264
Query: 361 WAHWAFAPFRLAQGLLAALCPDGAIP----------------------------XXXXXX 392
WAH AFAP R L + + P + P
Sbjct: 1265WAHLAFAPLRFGMSLSSYIYPRDSSPPSGLQPHHQVDLQSHHQVDLQSHHQVDLQSHHQL 1444
Query: 393 XGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
GIHWYS+LLY+IG+W+LD +LHPLGM +S
Sbjct: 1445EGIHWYSQLLYQIGTWLLDSSSLHPLGMATKSS 1543
>emb|Z35669.1|BRSONHP B.rerio shh mRNA for sonic hedgehog protein
Length = 1684
Score = 555 bits (1429), Expect = e-156
Identities = 280/425 (65%), Positives = 328/425 (76%), Gaps = 2/425 (0%)
Frame = +1
Query: 3 EMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGAS 62
+M LLTR+LLV + LV SGL CGPGRG G+RRHPKKLTPLAYKQFIPNVAEKTLGAS
Sbjct: 244 KMRLLTRVLLVSLLTLSLVVSGLACGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGAS 423
Query: 63 GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPG 122
GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLN+LAISVMN WPG
Sbjct: 424 GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNHWPG 603
Query: 123 VKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 182
VKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGFDWVYYESKA
Sbjct: 604 VKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKA 783
Query: 183 HIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFL 242
HIHCSVKAENSVAAKSGGCFPGSA V L+ GG K VKDL+PGD+VLAAD+ G L++SDF+
Sbjct: 784 HIHCSVKAENSVAAKSGGCFPGSALVSLQDGGQKAVKDLNPGDKVLAADSAGNLVFSDFI 963
Query: 243 TFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKP 302
F DR ++R++FYVIET++P + T + A +AS+V+
Sbjct: 964 MFTDRDSTTRRVFYVIETQEPVEKITLTAAHLLFVLDNSTEDLHTMT----AAYASSVRA 1131
Query: 303 GQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWA 362
GQ+V V+ + GQ L + + EE G++AP+TA GTI+++R+LASCYAVIE+ A
Sbjct: 1132GQKVMVVDDSGQ--LKSVIVQRIYTEEQRGSFAPVTAHGTIVVDRILASCYAVIEDQGLA 1305
Query: 363 HWAFAPFRLAQGLLAALCPDGAIPXXXXX--XXGIHWYSRLLYRIGSWVLDGDALHPLGM 420
H AFAP RL + + L P + G+HWYSRLLY++G+W+LD + LHPLGM
Sbjct: 1306HLAFAPARLYYYVSSFLFPQNSSSRSNATLQQEGVHWYSRLLYQMGTWLLDSNMLHPLGM 1485
Query: 421 VAPAS 425
+S
Sbjct: 1486SVNSS 1500
>gb|L27585.1|ZEFVHH1A Brachydanio rerio (vhh-1) mRNA, complete cds
Length = 2600
Score = 555 bits (1429), Expect = e-156
Identities = 280/425 (65%), Positives = 328/425 (76%), Gaps = 2/425 (0%)
Frame = +2
Query: 3 EMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGAS 62
+M LLTR+LLV + LV SGL CGPGRG G+RRHPKKLTPLAYKQFIPNVAEKTLGAS
Sbjct: 317 KMRLLTRVLLVSLLTLSLVVSGLACGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGAS 496
Query: 63 GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPG 122
GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLN+LAISVMN WPG
Sbjct: 497 GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNHWPG 676
Query: 123 VKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 182
VKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGFDWVYYESKA
Sbjct: 677 VKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKA 856
Query: 183 HIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFL 242
HIHCSVKAENSVAAKSGGCFPGSA V L+ GG K VKDL+PGD+VLAAD+ G L++SDF+
Sbjct: 857 HIHCSVKAENSVAAKSGGCFPGSALVSLQDGGQKAVKDLNPGDKVLAADSAGNLVFSDFI 1036
Query: 243 TFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKP 302
F DR ++R++FYVIET++P + T + A +AS+V+
Sbjct: 1037MFTDRDSTTRRVFYVIETQEPVEKITLTAAHLLFVLDNSTEDLHTMT----AAYASSVRA 1204
Query: 303 GQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWA 362
GQ+V V+ + GQ L + + EE G++AP+TA GTI+++R+LASCYAVIE+ A
Sbjct: 1205GQKVMVVDDSGQ--LKSVIVQRIYTEEQRGSFAPVTAHGTIVVDRILASCYAVIEDQGLA 1378
Query: 363 HWAFAPFRLAQGLLAALCPDGAIPXXXXX--XXGIHWYSRLLYRIGSWVLDGDALHPLGM 420
H AFAP RL + + L P + G+HWYSRLLY++G+W+LD + LHPLGM
Sbjct: 1379HLAFAPARLYYYVSSFLFPQNSSSRSNATLQQEGVHWYSRLLYQMGTWLLDSNMLHPLGM 1558
Query: 421 VAPAS 425
+S
Sbjct: 1559SVNSS 1573
>gb|U30711.1|DRU30711 Danio rerio sonic hedgehog (shh), complete cds
Length = 1257
Score = 554 bits (1428), Expect = e-156
Identities = 280/424 (66%), Positives = 327/424 (77%), Gaps = 2/424 (0%)
Frame = +1
Query: 4 MLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASG 63
M LLTR+LLV + LV SGL CGPGRG G+RRHPKKLTPLAYKQFIPNVAEKTLGASG
Sbjct: 1 MRLLTRVLLVSLLTLSLVVSGLACGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGASG 180
Query: 64 RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV 123
RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLN+LAISVMN WPGV
Sbjct: 181 RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNHWPGV 360
Query: 124 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH 183
KLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGFDWVYYESKAH
Sbjct: 361 KLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKAH 540
Query: 184 IHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLT 243
IHCSVKAENSVAAKSGGCFPGSA V L+ GG K VKDL+PGD+VLAAD+ G L++SDF+
Sbjct: 541 IHCSVKAENSVAAKSGGCFPGSALVSLQDGGQKAVKDLNPGDKVLAADSAGNLVFSDFIM 720
Query: 244 FLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPG 303
F DR ++R++FYVIET++P + T + A +AS+V+ G
Sbjct: 721 FTDRDSTTRRVFYVIETQEPVEKITLTAAHLLFVLDNSTEDLHTMT----AAYASSVRAG 888
Query: 304 QRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAH 363
Q+V V+ + GQ L + + EE G++AP+TA GTI+++R+LASCYAVIE+ AH
Sbjct: 889 QKVMVVDDSGQ--LKSVIVQRIYTEEQRGSFAPVTAHGTIVVDRILASCYAVIEDQGLAH 1062
Query: 364 WAFAPFRLAQGLLAALCPDGAIPXXXXX--XXGIHWYSRLLYRIGSWVLDGDALHPLGMV 421
AFAP RL + + L P + G+HWYSRLLY++G+W+LD + LHPLGM
Sbjct: 1063LAFAPARLYYYVSSFLFPQNSSSRSNATLQQEGVHWYSRLLYQMGTWLLDSNMLHPLGMS 1242
Query: 422 APAS 425
+S
Sbjct: 1243VNSS 1254
>gb|U30710.1|DRU30710 Danio rerio tiggy-winkle hedgehog (twhh), complete cds
Length = 1251
Score = 542 bits (1396), Expect = e-152
Identities = 278/417 (66%), Positives = 312/417 (74%)
Frame = +1
Query: 5 LLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGR 64
L L + L+ FI LL GL CGPGRG GKRRHPKKLTPLAYKQFIPNVAEKTLGASG+
Sbjct: 13 LHLKQFALLCFISLLLTPCGLACGPGRGYGKRRHPKKLTPLAYKQFIPNVAEKTLGASGK 192
Query: 65 YEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVK 124
YEGKITRNSERFKEL PNYNPDIIFKDEENT ADRLMT+RCKDKLN+LAISVMN WPGVK
Sbjct: 193 YEGKITRNSERFKELIPNYNPDIIFKDEENTNADRLMTKRCKDKLNSLAISVMNHWPGVK 372
Query: 125 LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHI 184
LRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYGML+RLAVEAGFDWVYYESKAHI
Sbjct: 373 LRVTEGWDEDGHHLEESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVYYESKAHI 552
Query: 185 HCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTF 244
HCSVKAENSVAAKSGGCFPGS TV L G K +KDL GDRVLAAD G +L SDF+ F
Sbjct: 553 HCSVKAENSVAAKSGGCFPGSGTVTLGDGTRKPIKDLKVGDRVLAADEKGNVLISDFIMF 732
Query: 245 LDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQ 304
+D ++R+ F VIET +P N S A+G T A FASNVKPG
Sbjct: 733 IDHDPTTRRQFIVIETSEPFTKLTLTAAHLVFVG---NSSAASGIT---ATFASNVKPGD 894
Query: 305 RVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHW 364
V V + + L +V + EE G++AP+TA GTI++++VLASCYAVIE H WAHW
Sbjct: 895 TVLVWEDTCESLKSVTVKRI-YTEEHEGSFAPVTAHGTIIVDQVLASCYAVIENHKWAHW 1071
Query: 365 AFAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMV 421
AFAP RL L+ L P GIHWYS +L+ IGSW+LD D+ HPLG++
Sbjct: 1072AFAPVRLCHKLMTWLFP-ARESNVNFQEDGIHWYSNMLFHIGSWLLDRDSFHPLGIL 1239
>gb|AF047466.1|AF047466 Notophthalmus viridescens hedgehog segment polarity homolog mRNA,
complete cds
Length = 1635
Score = 478 bits (1229), Expect = e-133
Identities = 252/421 (59%), Positives = 295/421 (69%), Gaps = 2/421 (0%)
Frame = +1
Query: 7 LTRILLVGFICALLVSS--GLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGR 64
L + L+ CALL+ L CGPGR IG+R P +L PL+YKQF+P+V EKTLGASGR
Sbjct: 7 LLALPLLAVACALLLGGPGALGCGPGRVIGRRPRPPRLIPLSYKQFLPHVPEKTLGASGR 186
Query: 65 YEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVK 124
YEGKI RNSERFKELTPNYNPDIIFKDEENTGADR+MTQRCKD+LN+LAISVMNQWPGVK
Sbjct: 187 YEGKIARNSERFKELTPNYNPDIIFKDEENTGADRIMTQRCKDRLNSLAISVMNQWPGVK 366
Query: 125 LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHI 184
LRVTEGWDEDGHHS+ESLHYEGRAVDITTSDRDR+KYGMLARLA EAGFDWVYYESKAHI
Sbjct: 367 LRVTEGWDEDGHHSDESLHYEGRAVDITTSDRDRNKYGMLARLAAEAGFDWVYYESKAHI 546
Query: 185 HCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTF 244
HCSVK+E+S AAK+GGCFP A LE G + DL PG RVL D GR YSDFLTF
Sbjct: 547 HCSVKSEHSAAAKTGGCFPARALATLESGEKIPIADLEPGHRVLCMDEGGRRTYSDFLTF 726
Query: 245 LDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQ 304
LDR ++ K FYV+ETR P ST +FAS+V+PGQ
Sbjct: 727 LDRDSTAVKEFYVVETRDPPRRLALTAAHLLFVADNFTVPLTDFST----VFASHVQPGQ 894
Query: 305 RVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHW 364
Y+L EG L PA V SV+ + + SGAYAPLT+ GT+L++ V+ SC+AV+++H A
Sbjct: 895 --YILTEGVLGLQPARVVSVTTQTD-SGAYAPLTSHGTLLVDDVVVSCFAVVQKHQLAQL 1065
Query: 365 AFAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPA 424
AF P RL ++ G+HWYS LLYR+G +L + HP GM +
Sbjct: 1066AFWPLRLYH----------SVGRPETQPEGMHWYSLLLYRLGKVLLMKEQFHPFGMPSTK 1215
Query: 425 S 425
S
Sbjct: 1216S 1218
>gb|U58511.1|GGU58511 Gallus gallus indian hedgehog protein mRNA, complete cds
Length = 1958
Score = 476 bits (1226), Expect = e-132
Identities = 260/418 (62%), Positives = 297/418 (70%), Gaps = 7/418 (1%)
Frame = +1
Query: 9 RILLVGFICALLVSSGLTC-GPGRGIGKRRHP-KKLTPLAYKQFIPNVAEKTLGASGRYE 66
R+LL+ CALL++ + C GPGR +G RR P +KL PLAYKQF PNV EKTLGASGRYE
Sbjct: 340 RLLLLLSGCALLLAPAVRCCGPGRVVGSRRRPPRKLIPLAYKQFSPNVPEKTLGASGRYE 519
Query: 67 GKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLR 126
GKI RNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKD+LN+LAISVMNQWPGVKLR
Sbjct: 520 GKIARNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLR 699
Query: 127 VTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHC 186
VTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KYGMLARLAVEAGFDWVYYESKAHIHC
Sbjct: 700 VTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGMLARLAVEAGFDWVYYESKAHIHC 879
Query: 187 SVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLD 246
SVK+E+S AAK+GGCFPG A LE+G + L PG RVLA D GR YSDFL FLD
Sbjct: 880 SVKSEHSAAAKTGGCFPGRALATLENGARTPLWALRPGQRVLAMDGAGRPTYSDFLAFLD 1059
Query: 247 RMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQA----LFASNVKP 302
+ + F+VIETRQP P H A +++ A FAS+V+P
Sbjct: 1060KEPRALTAFHVIETRQP--------PRRLALTPTHLLFVADNASAPAAQFRPTFASHVQP 1215
Query: 303 GQRVYV-LGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSW 361
G V V +G GG Q PA V V R + GAYAPLT GT++++ V+ASC+A++ E
Sbjct: 1216GHFVLVAVGSGGLQ--PAEVVGVRGRTDV-GAYAPLTRHGTLVVDDVVASCFALVREQQL 1386
Query: 362 AHWAFAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLG 419
A AF P RL LL G G+HWYS LLYR+G +L D+ HPLG
Sbjct: 1387AQMAFWPLRLYHSLLGGPGVQG---------DGVHWYSGLLYRLGRMLLPPDSFHPLG 1533
>gb|U26404.1|XLU26404 Xenopus laevis banded hedgehog protein mRNA, complete cds
Length = 1230
Score = 472 bits (1215), Expect = e-131
Identities = 249/422 (59%), Positives = 302/422 (71%), Gaps = 7/422 (1%)
Frame = +1
Query: 7 LTRILLVGFICALLVSSGLT-CGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L +++L+ ALL+S + CGPGR +G+RR P KL+PL+YKQF PNV EKTLGASGRY
Sbjct: 7 LPKVVLLLCAAALLLSGAVRGCGPGRVVGRRRRPTKLSPLSYKQFSPNVPEKTLGASGRY 186
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKL 125
EGKI+RNSERFKELTPNYNPDIIFKDEE TGADRLMTQRCKD+LN+LAISVMNQWPGVKL
Sbjct: 187 EGKISRNSERFKELTPNYNPDIIFKDEEITGADRLMTQRCKDRLNSLAISVMNQWPGVKL 366
Query: 126 RVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIH 185
RVTEGWDEDGHH EESLHYEGRAVDITTSDRDR+KYGMLARLAVEAGFDWVYYESKAHIH
Sbjct: 367 RVTEGWDEDGHHFEESLHYEGRAVDITTSDRDRNKYGMLARLAVEAGFDWVYYESKAHIH 546
Query: 186 CSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFL 245
CSVK+E+S AAK+GGCFPG A LE G V LSPG RVLA D GR YSDFL+FL
Sbjct: 547 CSVKSEHSAAAKTGGCFPGEALATLESGEKIPVSQLSPGLRVLAMDNSGRPTYSDFLSFL 726
Query: 246 DRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQH----NQSEATGSTSGQALFASNVK 301
D +F VI+T+ P P H + + +T ++ QA+FAS+V+
Sbjct: 727 DHSPKEEHMFQVIKTQDPH--------RRLFLTPAHLIFVSDNYSTPASEFQAVFASSVR 882
Query: 302 PGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSW 361
PGQ Y+L L+PA V SV+ + GAYAPLT GT++++ V+ SC+A++++
Sbjct: 883 PGQ--YILVSNVVGLIPAKVRSVNTQTN-YGAYAPLTQHGTLVVDDVVVSCFALVQKQRL 1053
Query: 362 AHWAFAPFRLAQ--GLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLG 419
A + P R+ G++A P + GIHWYS+ LY +G +L G+ HPLG
Sbjct: 1054AQIVYWPLRVLYNLGIIAGTQPSQQM--------GIHWYSKALYHLGRLILHGNEFHPLG 1209
Query: 420 MV 421
+V
Sbjct: 1210IV 1215
>ref|NM_010544.1| Mus musculus Indian hedgehog homolog, (Drosophila) (Ihh), mRNA
Length = 2103
Score = 465 bits (1196), Expect = e-129
Identities = 245/408 (60%), Positives = 283/408 (69%), Gaps = 1/408 (0%)
Frame = +1
Query: 19 LLVSSGLTCGPGRGIGKRRHP-KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFK 77
LLV + CGPGR +G RR P +KL PLAYKQF PNV EKTLGASGRYEGKI R+SERFK
Sbjct: 355 LLVPAARGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFK 534
Query: 78 ELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHH 137
ELTPNYNPDIIFKDEENTGADRLMTQRCKD+LN+LAISVMNQWPGVKLRVTEGWDEDGHH
Sbjct: 535 ELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHH 714
Query: 138 SEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAK 197
SEESLHYEGRAVDITTSDRDR+KYG+LARLAVEAGFDWVYYESKAH+HCSVK+E+S AAK
Sbjct: 715 SEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAK 894
Query: 198 SGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYV 257
+GGCFP A V LE+G + + PGDRVLA DG +SD L FLDR + + F V
Sbjct: 895 TGGCFPAGAQVRLENGERVALSAVKPGDRVLAMGEDGTPTFSDVLIFLDREPNRLRAFQV 1074
Query: 258 IETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVLGEGGQQLL 317
IET+ P H + A +A FAS+V+PGQ YVL G L
Sbjct: 1075IETQDPPRRLALTPAHLLFIADNHTEPAA----HFRATFASHVQPGQ--YVLVSGVPGLQ 1236
Query: 318 PASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRLAQGLLA 377
PA V +VS A G+YAPLT GT+++ V+ASC+A + +H A AF P RL L
Sbjct: 1237PARVAAVS-THVALGSYAPLTRHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFPSLAW 1413
Query: 378 ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
G+HWY ++LYR+G +L+ HPLGM S
Sbjct: 1414G---------SWTPSEGVHWYPQMLYRLGRLLLEESTFHPLGMSGAGS 1530
>gb|U85610.1|MMU85610 Mus musculus Indian hedgehog protein (Ihh) mRNA, complete cds
Length = 2103
Score = 465 bits (1196), Expect = e-129
Identities = 245/408 (60%), Positives = 283/408 (69%), Gaps = 1/408 (0%)
Frame = +1
Query: 19 LLVSSGLTCGPGRGIGKRRHP-KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFK 77
LLV + CGPGR +G RR P +KL PLAYKQF PNV EKTLGASGRYEGKI R+SERFK
Sbjct: 355 LLVPAARGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFK 534
Query: 78 ELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHH 137
ELTPNYNPDIIFKDEENTGADRLMTQRCKD+LN+LAISVMNQWPGVKLRVTEGWDEDGHH
Sbjct: 535 ELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHH 714
Query: 138 SEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAK 197
SEESLHYEGRAVDITTSDRDR+KYG+LARLAVEAGFDWVYYESKAH+HCSVK+E+S AAK
Sbjct: 715 SEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAK 894
Query: 198 SGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYV 257
+GGCFP A V LE+G + + PGDRVLA DG +SD L FLDR + + F V
Sbjct: 895 TGGCFPAGAQVRLENGERVALSAVKPGDRVLAMGEDGTPTFSDVLIFLDREPNRLRAFQV 1074
Query: 258 IETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVLGEGGQQLL 317
IET+ P H + A +A FAS+V+PGQ YVL G L
Sbjct: 1075IETQDPPRRLALTPAHLLFIADNHTEPAA----HFRATFASHVQPGQ--YVLVSGVPGLQ 1236
Query: 318 PASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRLAQGLLA 377
PA V +VS A G+YAPLT GT+++ V+ASC+A + +H A AF P RL L
Sbjct: 1237PARVAAVS-THVALGSYAPLTRHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFPSLAW 1413
Query: 378 ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
G+HWY ++LYR+G +L+ HPLGM S
Sbjct: 1414G---------SWTPSEGVHWYPQMLYRLGRLLLEESTFHPLGMSGAGS 1530
>emb|Y08426.1|DRECHIDNA D.rerio mRNA for EHH protein
Length = 1479
Score = 457 bits (1176), Expect = e-127
Identities = 242/415 (58%), Positives = 291/415 (69%), Gaps = 3/415 (0%)
Frame = +1
Query: 11 LLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKIT 70
LL GFI A + CGPGRG GKRR P+KLTPLAYKQF PNVAEKTLGASGRYEGK+T
Sbjct: 25 LLTGFILAFSPAYD-GCGPGRGYGKRRTPRKLTPLAYKQFSPNVAEKTLGASGRYEGKVT 201
Query: 71 RNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEG 130
+SERFKELTPNYNPDIIFKDEENTGADR+MTQRCKDKLN+LAISVMN WPGV+LRVTEG
Sbjct: 202 PSSERFKELTPNYNPDIIFKDEENTGADRMMTQRCKDKLNSLAISVMNLWPGVRLRVTEG 381
Query: 131 WDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKA 190
WDEDG HSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGFDWVYYESK H+HCSVK+
Sbjct: 382 WDEDGLHSEESLHYEGRAVDITTSDRDRNKYRMLARLAVEAGFDWVYYESKGHVHCSVKS 561
Query: 191 ENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLA---ADADGRLLYSDFLTFLDR 247
E+SVAAK+GGCFPG A V ++ G + ++DL GD VLA +D G L+YS+ LTFLDR
Sbjct: 562 EHSVAAKTGGCFPGRALVTMKDGSHRQIRDLQAGDLVLASEGSDGTGDLIYSEVLTFLDR 741
Query: 248 MDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVY 307
++K FYVI T + + + +FAS+ + GQ
Sbjct: 742 RPITQKHFYVIRTEDGASVSLTAAHLLFMRVGNCSNRGEPKPGAVRTIFASDAQVGQ-CL 918
Query: 308 VLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFA 367
+LG+ ++ + + V +RE+ G Y PLTA GT+++N VL SCYA + AHWAFA
Sbjct: 919 LLGKLRKRF--SQITHVGVRED-QGLYPPLTAHGTVVVNDVLTSCYAAVNRQRLAHWAFA 1089
Query: 368 PFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVA 422
P RL L + PD + G+HWYS++L +G +LD + HPL + A
Sbjct: 1090PLRL---LYSWTGPDQVL------KNGLHWYSQVLIGLGKLLLDSELFHPLALEA 1227
>ref|NM_007857.1| Mus musculus desert hedgehog homolog, (Drosophila) (Dhh), mRNA
Length = 1191
Score = 441 bits (1133), Expect = e-122
Identities = 232/394 (58%), Positives = 283/394 (70%), Gaps = 6/394 (1%)
Frame = +1
Query: 18 ALLVSSGLTCGPGRG-IGKRRHPKK-LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSER 75
ALL S +CGPGRG +G+RR+ +K L PL YKQF+P++ E+TLGASG EG++TR SER
Sbjct: 40 ALLALSAQSCGPGRGPVGRRRYVRKQLVPLLYKQFVPSMPERTLGASGPAEGRVTRGSER 219
Query: 76 FKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDG 135
F++L PNYNPDIIFKDEEN+GADRLMT+RCK+++NALAI+VMN WPGV+LRVTEGWDEDG
Sbjct: 220 FRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTEGWDEDG 399
Query: 136 HHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVA 195
HH+++SLHYEGRA+DITTSDRDR+KYG+LARLAVEAGFDWVYYES+ HIH SVKA+NS+A
Sbjct: 400 HHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESRNHIHVSVKADNSLA 579
Query: 196 AKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLF 255
++GGCFPG+ATV L G K +++L GD VLAADA GR++ + L FLDR R F
Sbjct: 580 VRAGGCFPGNATVRLRSGERKGLRELHRGDWVLAADAAGRVVPTPVLLFLDRDLQRRASF 759
Query: 256 YVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQA----LFASNVKPGQRVYVLGE 311
+ET +P P H A G +FA ++ G VL
Sbjct: 760 VAVETERP--------PRKLLLTPWHLVFAARGPAPAPGDFAPVFARRLRAGDS--VLAP 909
Query: 312 GGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRL 371
GG L PA V V+ REEA G +APLTA GT+L+N VLASCYAV+E H WAH AFAP RL
Sbjct: 910 GGDALQPARVARVA-REEAVGVFAPLTAHGTLLVNDVLASCYAVLESHQWAHRAFAPLRL 1086
Query: 372 AQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRI 405
L AL P GA+ G+HWYSRLLYR+
Sbjct: 1087LHA-LGALLPGGAV-----QPTGMHWYSRLLYRL 1170
>emb|X76292.1|MMDHH M.musculus (129/Su) Dhh gene
Length = 1191
Score = 441 bits (1133), Expect = e-122
Identities = 232/394 (58%), Positives = 283/394 (70%), Gaps = 6/394 (1%)
Frame = +1
Query: 18 ALLVSSGLTCGPGRG-IGKRRHPKK-LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSER 75
ALL S +CGPGRG +G+RR+ +K L PL YKQF+P++ E+TLGASG EG++TR SER
Sbjct: 40 ALLALSAQSCGPGRGPVGRRRYVRKQLVPLLYKQFVPSMPERTLGASGPAEGRVTRGSER 219
Query: 76 FKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDG 135
F++L PNYNPDIIFKDEEN+GADRLMT+RCK+++NALAI+VMN WPGV+LRVTEGWDEDG
Sbjct: 220 FRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTEGWDEDG 399
Query: 136 HHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVA 195
HH+++SLHYEGRA+DITTSDRDR+KYG+LARLAVEAGFDWVYYES+ HIH SVKA+NS+A
Sbjct: 400 HHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESRNHIHVSVKADNSLA 579
Query: 196 AKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLF 255
++GGCFPG+ATV L G K +++L GD VLAADA GR++ + L FLDR R F
Sbjct: 580 VRAGGCFPGNATVRLRSGERKGLRELHRGDWVLAADAAGRVVPTPVLLFLDRDLQRRASF 759
Query: 256 YVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQA----LFASNVKPGQRVYVLGE 311
+ET +P P H A G +FA ++ G VL
Sbjct: 760 VAVETERP--------PRKLLLTPWHLVFAARGPAPAPGDFAPVFARRLRAGDS--VLAP 909
Query: 312 GGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRL 371
GG L PA V V+ REEA G +APLTA GT+L+N VLASCYAV+E H WAH AFAP RL
Sbjct: 910 GGDALQPARVARVA-REEAVGVFAPLTAHGTLLVNDVLASCYAVLESHQWAHRAFAPLRL 1086
Query: 372 AQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRI 405
L AL P GA+ G+HWYSRLLYR+
Sbjct: 1087LHA-LGALLPGGAV-----QPTGMHWYSRLLYRL 1170
>ref|XM_090366.1| Homo sapiens similar to DESERT HEDGEHOG PROTEIN PRECURSOR (DHH)
(HHG-3) (LOC160552), mRNA
Length = 1191
Score = 439 bits (1129), Expect = e-121
Identities = 236/413 (57%), Positives = 289/413 (69%), Gaps = 6/413 (1%)
Frame = +1
Query: 4 MLLLTRILLVGFICALLVSSGLTCGPGRG-IGKRRHPKK-LTPLAYKQFIPNVAEKTLGA 61
M LLT +L + + ALL +CGPGRG +G+RR+ +K L PL YKQF+P V E+TLGA
Sbjct: 1 MALLTNLLPLCCL-ALLALPAQSCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPERTLGA 177
Query: 62 SGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWP 121
SG EG++ R SERF++L PNYNPDIIFKDEEN+GADRLMT+RCK+++NALAI+VMN WP
Sbjct: 178 SGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWP 357
Query: 122 GVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESK 181
GV+LRVTEGWDEDGHH+++SLHYEGRA+DITTSDRDR+KYG+LARLAVEAGFDWVYYES+
Sbjct: 358 GVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESR 537
Query: 182 AHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDF 241
H+H SVKA+NS+A ++GGCFPG+ATV L G K +++L GD VLAADA GR++ +
Sbjct: 538 NHVHVSVKADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVVPTPV 717
Query: 242 LTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQA----LFA 297
L FLDR R F +ET P P H A G +FA
Sbjct: 718 LLFLDRDLQRRASFVAVETEWP--------PRKLLLTPWHLVFAARGPAPAPGDFAPVFA 873
Query: 298 SNVKPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIE 357
++ G VL GG L PA V V+ REEA G +APLTA GT+L+N VLASCYAV+E
Sbjct: 874 RRLRAGDS--VLAPGGDALRPARVARVA-REEAVGVFAPLTAHGTLLVNDVLASCYAVLE 1044
Query: 358 EHSWAHWAFAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
H WAH AFAP RL L AL P GA+ G+HWYSRLLYR+ +L
Sbjct: 1045SHQWAHRAFAPLRLLHA-LGALLPGGAV-----QPTGMHWYSRLLYRLAEELL 1185
>gb|U26349.1|XLU26349 Xenopus laevis cephalic hedgehog protein mRNA, complete cds
Length = 1191
Score = 416 bits (1070), Expect = e-114
Identities = 223/404 (55%), Positives = 272/404 (67%), Gaps = 2/404 (0%)
Frame = +1
Query: 9 RILLVGFICALLVSSGLTCGPGRG-IGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEG 67
RI+++ C LL+ CGPGRG +G+RR+ +KL PL YKQF+PNV EKTLGASG+ EG
Sbjct: 13 RIVILAICCGLLLVPVRCCGPGRGPVGRRRYMRKLVPLHYKQFVPNVPEKTLGASGKSEG 192
Query: 68 KITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRV 127
KI R SERF EL PNYNPDIIFKDEE TGADRLMT+RCKD++NALAISVMN WPGVKLRV
Sbjct: 193 KIHRGSERFIELVPNYNPDIIFKDEEKTGADRLMTERCKDRVNALAISVMNMWPGVKLRV 372
Query: 128 TEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCS 187
TEGWDEDGHH+ +SLHYEGRA+DITTSDRDR+KYGMLARLAVEAGFDWVYYESKAHIH S
Sbjct: 373 TEGWDEDGHHAHDSLHYEGRALDITTSDRDRNKYGMLARLAVEAGFDWVYYESKAHIHVS 552
Query: 188 VKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDR 247
VKA+NS+ +SGGCFPG+A V + G K + +L GD V D G+L+ S L FL R
Sbjct: 553 VKADNSLGVRSGGCFPGTAMVMMGTGERKPLSELKIGDTVYTTDETGQLITSVVLLFLHR 732
Query: 248 MDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSG-QALFASNVKPGQRV 306
F +IE P H + S++G FA V+ G V
Sbjct: 733 NPYKTATFVLIEAE--------GHPSKLLVTPNHLLFIQSSSSAGFLPTFAYRVQIGDLV 888
Query: 307 YVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAF 366
+ G Q+ + V VSL EE +G YAP+T GT+L++ VL SCYA +E H+ AH +
Sbjct: 889 QIY-VNGTQVQSSKVVRVSL-EEQTGVYAPMTEHGTLLVDGVLTSCYATVESHTLAHVSL 1062
Query: 367 APFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
AP RL QG +A++ PD G+HWY +LY + +VL
Sbjct: 1063APLRLFQG-IASMLPD------LDMSDGVHWYCHILYVLAKYVL 1173
>emb|AJ245882.2|BBE245882 Branchiostoma belcheri partial mRNA for amphioxus hedgehog protein
Length = 3540
Score = 410 bits (1053), Expect = e-112
Identities = 211/391 (53%), Positives = 258/391 (65%)
Frame = +2
Query: 27 CGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPD 86
CGPG G+RRHP+KLTP YKQ +P V+E T GASG + G+ITR+SERF L N+N D
Sbjct: 650 CGPGTRYGRRRHPRKLTPFVYKQQMPAVSENTFGASGLFNGRITRDSERFHTLKQNFNTD 829
Query: 87 IIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEG 146
IIFKDEE TGADR MTQRCKDKLNALAISVMNQW GVKLRVTEGWDEDG H+EESLHYEG
Sbjct: 830 IIFKDEEKTGADRFMTQRCKDKLNALAISVMNQWEGVKLRVTEGWDEDGFHTEESLHYEG 1009
Query: 147 RAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSA 206
RAVDITTSDRD++KYGMLARLAVEAGFDWVYYESKAHIHCSVKAE+ A GGCFP +
Sbjct: 1010 RAVDITTSDRDKTKYGMLARLAVEAGFDWVYYESKAHIHCSVKAESDTTATQGGCFPEES 1189
Query: 207 TVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIETRQPRXX 266
V + G ++D+ PGD+VL+ D+ G ++S+ LTF+DR ++Y I+T
Sbjct: 1190 WVTRDDGKRIRMRDVRPGDKVLSMDSAGHPVFSEVLTFMDRDSRGPWVYYTIKTEDRNIT 1369
Query: 267 XXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVLGEGGQQLLPASVHSVSL 326
+ S A F S+V+PG+ + G + SV++
Sbjct: 1370 VTATPSHLVFVTESRDL-----SAPRVAKFMSDVRPGEFLLTPESDGGGFRKVEIVSVTM 1534
Query: 327 REEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRLAQGLLAALCPDGAIP 386
REE GAYAPLT GT++++ V SCYA+IE + AHW FAPFRL L ++L DG
Sbjct: 1535 REE-KGAYAPLTVHGTVVVDNVAMSCYALIESQALAHWVFAPFRLYYQLTSSLW-DGP-S 1705
Query: 387 XXXXXXXGIHWYSRLLYRIGSWVLDGDALHP 417
G+HWY YR G +++ LHP
Sbjct: 1706 HDQTLQEGVHWYPSFFYRYGISLVEPTLLHP 1798
>gb|U26350.1|XLU26350 Xenopus laevis hedgehog protein 4 (hh4) mRNA, complete cds
Length = 1197
Score = 409 bits (1051), Expect = e-112
Identities = 217/404 (53%), Positives = 270/404 (66%), Gaps = 3/404 (0%)
Frame = +1
Query: 10 ILLVGFICALLVSSGLTCGPGRGI--GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEG 67
++L C LL+ CGPGRG G+RR+ ++L PL YKQF+PNV EKTLGASG+ EG
Sbjct: 19 LILAACCCWLLLLPVRCCGPGRGPVGGRRRYMRRLVPLLYKQFVPNVPEKTLGASGKSEG 198
Query: 68 KITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRV 127
KI R SERF +L PNYNPDIIFKDEENTGADRLMT+RCKD++NALAISVMN WPG+KLRV
Sbjct: 199 KIRRGSERFIKLVPNYNPDIIFKDEENTGADRLMTERCKDRVNALAISVMNMWPGLKLRV 378
Query: 128 TEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCS 187
TEGWDEDGHH+ +SLHYEGRA+DITTSDRDR+KYGMLARLAVEAGFDWVYYESKAHIH S
Sbjct: 379 TEGWDEDGHHAHDSLHYEGRALDITTSDRDRNKYGMLARLAVEAGFDWVYYESKAHIHVS 558
Query: 188 VKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDR 247
V +NS+ +SGGCFPG+A V +E G K + +L GD V D G L++S L FL R
Sbjct: 559 VNTDNSLGVRSGGCFPGTAMVMMETGKKKPLSELKLGDTVFTTDETGLLIHSVVLLFLHR 738
Query: 248 MDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQ-SEATGSTSGQALFASNVKPGQRV 306
F +IE P H +++ ST Q FA V+ G +
Sbjct: 739 DPYKTATFVLIEAE--------GHPTKLLVTPNHLLFIKSSSSTGFQPTFAYRVQIGDLI 894
Query: 307 YVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAF 366
+ G Q+ + V VS+ +E +G YAP+T GT+L++ VL SCYA +E H+ AH +
Sbjct: 895 QIY-VNGTQVQSSKVVRVSV-DEQTGVYAPMTEHGTLLVDGVLTSCYATVESHTLAHASL 1068
Query: 367 APFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
AP RL QG +A++ PD G+HWY +LY + +VL
Sbjct: 1069APLRLFQG-IASMLPD------LHTSDGVHWYCHILYVLAKYVL 1179
>emb|Y13858.1|BFAMPHIHH Branchiostoma floridae mRNA for AmphiHh gene
Length = 3610
Score = 408 bits (1048), Expect = e-112
Identities = 210/391 (53%), Positives = 256/391 (64%)
Frame = +1
Query: 27 CGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPD 86
CGPG G+RRHP+KLTP YKQ +P V+E T GASG + G+ITR+SERF L N+N D
Sbjct: 709 CGPGGRFGRRRHPRKLTPFVYKQQMPAVSENTFGASGLFNGRITRDSERFHTLKQNFNTD 888
Query: 87 IIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEG 146
IIFKDEE TGADR MTQRCKDKLNALAISVMNQW GVKLRVTEGWDEDG H+EESLHYEG
Sbjct: 889 IIFKDEEKTGADRFMTQRCKDKLNALAISVMNQWEGVKLRVTEGWDEDGFHTEESLHYEG 1068
Query: 147 RAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSA 206
RAVDITTSDRDR+KYGMLARLAVEAGFDWVYYESKAHIHCSVKAE+ A GGCF +
Sbjct: 1069 RAVDITTSDRDRTKYGMLARLAVEAGFDWVYYESKAHIHCSVKAESDTTATQGGCFSAES 1248
Query: 207 TVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIETRQPRXX 266
V + G ++D+ PGD+VL+ D+ G ++S+ LTF+DR ++Y I T
Sbjct: 1249 WVTRDDGNRIRMRDVRPGDKVLSMDSGGHPVFSEVLTFMDRESRGPWVYYTIHTDDRNIT 1428
Query: 267 XXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVLGEGGQQLLPASVHSVSL 326
+ S+ A F S+ +PG+ + G + SV++
Sbjct: 1429 VTATPSHLVFVTESRDL-----SSPRIAKFMSDARPGEFLLTPDSDGGGFRKVKIVSVTM 1593
Query: 327 REEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRLAQGLLAALCPDGAIP 386
REE GAYAPLT GT++++ V SCYA+IE + AHW FAPFRL L ++L DG
Sbjct: 1594 REE-KGAYAPLTVHGTVVVDNVAMSCYALIESQALAHWVFAPFRLYYQLTSSLW-DGP-S 1764
Query: 387 XXXXXXXGIHWYSRLLYRIGSWVLDGDALHP 417
G+HWY YR G +++ LHP
Sbjct: 1765 HDQTLQEGVHWYPSFFYRYGISLVEPTLLHP 1857
>emb|X76291.1|MMIHH M.musculus (C57BL/6J) Ihh mRNA
Length = 1011
Score = 389 bits (1000), Expect = e-106
Identities = 205/352 (58%), Positives = 239/352 (67%)
Frame = +1
Query: 74 ERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDE 133
ERFKELTPNYNPDIIFKDEENTGADRLMTQRCKD+LN+LAISVMNQWPGVKLRVTEGWDE
Sbjct: 1 ERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDE 180
Query: 134 DGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENS 193
DGHHSEESLHYEGRAVDITTSDRDR+KYG+LARLAVEAGFDWVYYESKAH+HCSVK+E+S
Sbjct: 181 DGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHS 360
Query: 194 VAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRK 253
AAK+GGCFP A V LE+G + + PGDRVLA DG +SD L FLDR + +
Sbjct: 361 AAAKTGGCFPAGAQVRLENGERVALSAVKPGDRVLAMGEDGTPTFSDVLIFLDREPNRLR 540
Query: 254 LFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVLGEGG 313
F VIET+ P H + A +A FAS+V+PGQ YVL G
Sbjct: 541 AFQVIETQDPPRRLALTPAHLLFIADNHTEPAA----HFRATFASHVQPGQ--YVLVSGV 702
Query: 314 QQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRLAQ 373
L PA V +VS A G+YAPLT GT+++ V+ASC+A + +H A AF P RL
Sbjct: 703 PGLQPARVAAVS-THVALGSYAPLTRHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFP 879
Query: 374 GLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
L G+HWY ++LYR+G +L+ HPLGM S
Sbjct: 880 SLAWG---------SWTPSEGVHWYPQMLYRLGRLLLEESTFHPLGMSGAGS 1008
>dbj|AB044709.1|AB044709 Gryllus bimaculatus mRNA for hedgehog protein, partial cds
Length = 2963
Score = 389 bits (998), Expect = e-106
Identities = 212/409 (51%), Positives = 259/409 (62%), Gaps = 5/409 (1%)
Frame = +2
Query: 3 EMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGAS 62
+M LL R LL + L+ + CGPGRG G+RR ++LTPL +KQ +PNV+E TLGA+
Sbjct: 41 KMPLLLRWLL---LLLLMQGAARACGPGRGAGRRRASRRLTPLVFKQHVPNVSEHTLGAA 211
Query: 63 GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPG 122
G E ++ R+ RF++L PNYN DI+FKDEE TGADRLMTQRCK+KLN LAISVMNQWPG
Sbjct: 212 GPAERRVARDDPRFRDLVPNYNADIVFKDEEGTGADRLMTQRCKEKLNTLAISVMNQWPG 391
Query: 123 VKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 182
V+LRV EGWDE+G H+ +SLHYEGRAVD+TTSDRDRSKYGMLARLAVEAGFDWVYYE++
Sbjct: 392 VRLRVIEGWDEEGGHAADSLHYEGRAVDVTTSDRDRSKYGMLARLAVEAGFDWVYYETRG 571
Query: 183 HIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDR-VLAADADGRLLYSDF 241
HIHCSVK+E+S AAKSGGCF +TV GG + +L G R A GRL +S
Sbjct: 572 HIHCSVKSESSQAAKSGGCFAAESTVQTP-GGLCALAELRVGRRGAGAGPGHGRLAFSPV 748
Query: 242 LTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEA-TGSTSGQALFASNV 300
L FLDR + R L V P H A G +A FA V
Sbjct: 749 LLFLDRDPAPRTLLRV----------RTASGRTLALTPSHLLPVARAGGGEPEARFADAV 898
Query: 301 KPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHS 360
+PG + V + G + P V V G APLTA GT++++ VLASCYAV+ HS
Sbjct: 899 RPGDALLVAADAGGAVRPDRVLHVDAEATRGGVVAPLTAAGTVVVDGVLASCYAVVGSHS 1078
Query: 361 WAHWAFAPFRLAQGLLA--ALCPDGA-IPXXXXXXXGIHWYSRLLYRIG 406
AHW+FAP R L A PD A P G+HWY++ LY +G
Sbjct: 1079LAHWSFAPVRAWHWLTAWGHAAPDYAHPPPPARAAPGVHWYAKALYSLG 1225
>gb|S66384.1|S66384 hh=segment polarity gene hedgehog [Drosophila, Oregon-R, mRNA, 2305
nt]
Length = 2305
Score = 343 bits (880), Expect = 2e-92
Identities = 188/411 (45%), Positives = 248/411 (59%), Gaps = 6/411 (1%)
Frame = +1
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 496 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 672
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKL 125
EG I R+S +FK+L PNYN DI+F+DEE TGADRLM++RCK+KLN LA SVMN+WPG++L
Sbjct: 673 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRL 852
Query: 126 RVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIH 185
VTE WDED HH +ESLHYEGRAV I TSDRD+SKYGMLARLAVEAGFDWV Y S+ HI+
Sbjct: 853 LVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIY 1032
Query: 186 CSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFL 245
CSVK+++S+++ GCF +T LE G K + +LS GDRVL+ A+G+ +YS+ + F+
Sbjct: 1033CSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFM 1212
Query: 246 DRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQR 305
DR + F + T P+ S +FA ++ +
Sbjct: 1213DRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE--------SQKLTFVFADRIEEKNQ 1368
Query: 306 VYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWA 365
V V +L P V V + G APLT +GTI++N V ASCYAVI S AHW
Sbjct: 1369VLVRDVETGELRPQRVVKVG-SVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWG 1545
Query: 366 FAPFRLAQGLLA------ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
AP RL L A L + GIHWY+ LY++ +VL
Sbjct: 1546LAPMRLLSTLEAWLPAKEQLHSSPKVVSSAQQQNGIHWYANALYKVKDYVL 1698
>gb|L02793.1|DROHHA Drosophila melanogaster hedgehog protein (hh) gene, complete cds
Length = 3091
Score = 343 bits (880), Expect = 2e-92
Identities = 188/411 (45%), Positives = 248/411 (59%), Gaps = 6/411 (1%)
Frame = +3
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 828 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 1004
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKL 125
EG I R+S +FK+L PNYN DI+F+DEE TGADRLM++RCK+KLN LA SVMN+WPG++L
Sbjct: 1005 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRL 1184
Query: 126 RVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIH 185
VTE WDED HH +ESLHYEGRAV I TSDRD+SKYGMLARLAVEAGFDWV Y S+ HI+
Sbjct: 1185 LVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIY 1364
Query: 186 CSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFL 245
CSVK+++S+++ GCF +T LE G K + +LS GDRVL+ A+G+ +YS+ + F+
Sbjct: 1365 CSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFM 1544
Query: 246 DRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQR 305
DR + F + T P+ S +FA ++ +
Sbjct: 1545 DRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE--------SQKLTFVFADRIEEKNQ 1700
Query: 306 VYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWA 365
V V +L P V V + G APLT +GTI++N V ASCYAVI S AHW
Sbjct: 1701 VLVRDVETGELRPQRVVKVG-SVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWG 1877
Query: 366 FAPFRLAQGLLA------ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
AP RL L A L + GIHWY+ LY++ +VL
Sbjct: 1878 LAPMRLLSTLEAWLPAKEQLHSSPKVVSSAQQQNGIHWYANALYKVKDYVL 2030
>ref|XM_082291.1| hedgehog, mRNA
Length = 2045
Score = 343 bits (880), Expect = 2e-92
Identities = 188/411 (45%), Positives = 248/411 (59%), Gaps = 6/411 (1%)
Frame = +1
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 250 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 426
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKL 125
EG I R+S +FK+L PNYN DI+F+DEE TGADRLM++RCK+KLN LA SVMN+WPG++L
Sbjct: 427 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRL 606
Query: 126 RVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIH 185
VTE WDED HH +ESLHYEGRAV I TSDRD+SKYGMLARLAVEAGFDWV Y S+ HI+
Sbjct: 607 LVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIY 786
Query: 186 CSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFL 245
CSVK+++S+++ GCF +T LE G K + +LS GDRVL+ A+G+ +YS+ + F+
Sbjct: 787 CSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFM 966
Query: 246 DRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQR 305
DR + F + T P+ S +FA ++ +
Sbjct: 967 DRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE--------SQKLTFVFADRIEEKNQ 1122
Query: 306 VYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWA 365
V V +L P V V + G APLT +GTI++N V ASCYAVI S AHW
Sbjct: 1123VLVRDVETGELRPQRVVKVG-SVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWG 1299
Query: 366 FAPFRLAQGLLA------ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
AP RL L A L + GIHWY+ LY++ +VL
Sbjct: 1300LAPMRLLSTLEAWLPAKEQLHSSPKVVSSAQQQNGIHWYANALYKVKDYVL 1452
>gb|L38517.1|HUMIHH Homo sapiens indian hedgehog protein (IHH) mRNA, 5' end
Length = 1277
Score = 340 bits (873), Expect = 1e-91
Identities = 183/327 (55%), Positives = 214/327 (64%)
Frame = +2
Query: 99 RLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR 158
RLMTQRCKD+LN+LAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR
Sbjct: 5 RLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR 184
Query: 159 SKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLV 218
+KYG+LARLAVEAGFDWVYYESKAH+HCSVK+E+S AAK+GGCFP A V LE G +
Sbjct: 185 NKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVAL 364
Query: 219 KDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXX 278
+ PGDRVLA DG +SD L FLDR + F VIET+ P
Sbjct: 365 SAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLLFTA 544
Query: 279 PQHNQSEATGSTSGQALFASNVKPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLT 338
H + A +A FAS+V+PGQ V V G G Q PA V +VS A GAYAPLT
Sbjct: 545 DNHTEPAA----RFRATFASHVQPGQYVLVAGVPGLQ--PARVAAVS-THVALGAYAPLT 703
Query: 339 AQGTILINRVLASCYAVIEEHSWAHWAFAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWY 398
GT+++ V+ASC+A + +H A AF P RL L G G+HWY
Sbjct: 704 KHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFHSLAWGSWTPG---------EGVHWY 856
Query: 399 SRLLYRIGSWVLDGDALHPLGMVAPAS 425
+LLYR+G +L+ + HPLGM S
Sbjct: 857 PQLLYRLGRLLLEEGSFHPLGMSGAGS 937
>ref|NM_079735.1| Drosophila melanogaster hedgehog (hh), mRNA
Length = 2046
Score = 339 bits (869), Expect = 3e-91
Identities = 186/411 (45%), Positives = 247/411 (59%), Gaps = 6/411 (1%)
Frame = +1
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 250 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 426
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKL 125
EG I R+S +FK+L PNYN DI+F+DEE TGAD LM++RCK+KLN LA SVMN+WPG++L
Sbjct: 427 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADGLMSKRCKEKLNVLAYSVMNEWPGIRL 606
Query: 126 RVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIH 185
VTE WDED HH +ESLHYEGRAV I TSDRD+SKYGMLARLAVEAGFDWV Y S+ HI+
Sbjct: 607 LVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIY 786
Query: 186 CSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFL 245
CSVK+++S+++ GCF +T LE G K + +LS GDRVL+ A+G+ +YS+ + F+
Sbjct: 787 CSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFM 966
Query: 246 DRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQR 305
DR + F + T P+ S +FA ++ +
Sbjct: 967 DRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE--------SQKLTFVFAHRIEEKNQ 1122
Query: 306 VYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWA 365
V V +L P V + + G APLT +GTI++N V ASCYAVI S AHW
Sbjct: 1123VLVRDVETGELRPQRVVKLG-SVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWG 1299
Query: 366 FAPFRLAQGLLA------ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
AP RL L A L + GIHWY+ LY++ +VL
Sbjct: 1300LAPMRLLSTLEAWLPAKEQLHSSPKVVSSAQQQNGIHWYANALYKVKDYVL 1452
>gb|L05404.1|DROHHB Drosophila melanogaster hedgehog protein (hh) mRNA, complete cds
Length = 2046
Score = 339 bits (869), Expect = 3e-91
Identities = 186/411 (45%), Positives = 247/411 (59%), Gaps = 6/411 (1%)
Frame = +1
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 250 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 426
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKL 125
EG I R+S +FK+L PNYN DI+F+DEE TGAD LM++RCK+KLN LA SVMN+WPG++L
Sbjct: 427 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADGLMSKRCKEKLNVLAYSVMNEWPGIRL 606
Query: 126 RVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIH 185
VTE WDED HH +ESLHYEGRAV I TSDRD+SKYGMLARLAVEAGFDWV Y S+ HI+
Sbjct: 607 LVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIY 786
Query: 186 CSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFL 245
CSVK+++S+++ GCF +T LE G K + +LS GDRVL+ A+G+ +YS+ + F+
Sbjct: 787 CSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFM 966
Query: 246 DRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQR 305
DR + F + T P+ S +FA ++ +
Sbjct: 967 DRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE--------SQKLTFVFAHRIEEKNQ 1122
Query: 306 VYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWA 365
V V +L P V + + G APLT +GTI++N V ASCYAVI S AHW
Sbjct: 1123VLVRDVETGELRPQRVVKLG-SVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWG 1299
Query: 366 FAPFRLAQGLLA------ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
AP RL L A L + GIHWY+ LY++ +VL
Sbjct: 1300LAPMRLLSTLEAWLPAKEQLHSSPKVVSSAQQQNGIHWYANALYKVKDYVL 1452
>gb|AF059606.1|AF059606 Lytechinus variegatus hedgehog mRNA, complete cds
Length = 3022
Score = 335 bits (860), Expect = 4e-90
Identities = 194/404 (48%), Positives = 251/404 (62%), Gaps = 6/404 (1%)
Frame = +3
Query: 20 LVSSGLTCGPGRGIGKRRH-PKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKE 78
L++ C PGR GK H P+ TPL YKQ +PN++E T GASG EG+I R+ ERF +
Sbjct: 282 LIALTQACHPGRS-GKTSHRPRNRTPLQYKQKVPNISEDTFGASGPPEGRIDRDDERFSK 458
Query: 79 LTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHS 138
L+PN N DI+FKDEE TGADRLMTQRCKDKLN LAISVMN+WPG+KLRV E WDED +
Sbjct: 459 LSPNNNDDIVFKDEEGTGADRLMTQRCKDKLNTLAISVMNEWPGIKLRVVEAWDED-QPN 635
Query: 139 EESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKS 198
E LH EGRAVDITTSDRD++KYG LARLAVEAGFDWV YESKA +HCSVK+E++ A S
Sbjct: 636 VEPLHAEGRAVDITTSDRDKNKYGALARLAVEAGFDWVSYESKAWVHCSVKSESAAAKNS 815
Query: 199 GGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVI 258
GGCFPG + +L++G + D+ GD V + +G L YSD + + R + LFYVI
Sbjct: 816 GGCFPGFSQAYLKNGRMISMLDIRVGDEVAVVNNNGELDYSDVIMIVHRKLNDSTLFYVI 995
Query: 259 ETRQPRXXXXXXXXXXXXXXPQH----NQSEATGSTSGQALFASNVKPGQRVYVLGEGGQ 314
ET PQH ++ E+ S +A+FAS V+ Q VY +
Sbjct: 996 ETED---------KTIVQLTPQHLIYVSERESNFDQS-RAVFASEVRTNQFVYTTAQNHD 1145
Query: 315 Q-LLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRLAQ 373
+ + P V SV+ R A AP+T QG+++I+ V S YAV+ + AH +FAP R
Sbjct: 1146RGVRPMKVVSVTTR-LGHTAVAPVTRQGSLVIDGVAVSSYAVMRDEWVAHASFAPIRWYT 1322
Query: 374 GLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHP 417
+ L G +HWY++ LY++G +V+ D L P
Sbjct: 1323YISHML---GITDTDTGQEQRVHWYTQGLYKLGKYVM-SDRLFP 1442
>ref|XM_050846.2| Homo sapiens Indian hedgehog homolog (Drosophila) (IHH), mRNA
Length = 1262
Score = 333 bits (854), Expect = 2e-89
Identities = 179/323 (55%), Positives = 210/323 (64%)
Frame = +3
Query: 103 QRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 162
QRCKD+LN+LAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KYG
Sbjct: 3 QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYG 182
Query: 163 MLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLS 222
+LARLAVEAGFDWVYYESKAH+HCSVK+E+S AAK+GGCFP A V LE G + +
Sbjct: 183 LLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVR 362
Query: 223 PGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHN 282
PGDRVLA DG +SD L FLDR + F VIET+ P H
Sbjct: 363 PGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLLFTADNHT 542
Query: 283 QSEATGSTSGQALFASNVKPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGT 342
+ A +A FAS+V+PGQ V V G G Q PA V +VS A GAYAPLT GT
Sbjct: 543 EPAA----RFRATFASHVQPGQYVLVAGVPGLQ--PARVAAVS-THVALGAYAPLTKHGT 701
Query: 343 ILINRVLASCYAVIEEHSWAHWAFAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLL 402
+++ V+ASC+A + +H A AF P RL L G G+HWY +LL
Sbjct: 702 LVVEDVVASCFAAVADHHLAQLAFWPLRLFHSLAWGSWTPG---------EGVHWYPQLL 854
Query: 403 YRIGSWVLDGDALHPLGMVAPAS 425
YR+G +L+ + HPLGM S
Sbjct: 855 YRLGRLLLEEGSFHPLGMSGAGS 923
>gb|AF162915.1|AF162915 Rattus norvegicus sonic hedgehog protein mRNA, partial cds
Length = 482
Score = 323 bits (827), Expect = 2e-86
Identities = 157/160 (98%), Positives = 157/160 (98%)
Frame = +1
Query: 87 IIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEG 146
IIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEG
Sbjct: 1 IIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEG 180
Query: 147 RAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSA 206
RAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSA
Sbjct: 181 RAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSA 360
Query: 207 TVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLD 246
TVHLE GGTKLVKDLSPGDRVLAAD GRLLYSDFLTFLD
Sbjct: 361 TVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLD 480
>gb|AC078834.5| Homo sapiens BAC clone RP11-69O3 from 7, complete sequence
Length = 154737
Score = 303 bits (777), Expect = 2e-80
Identities = 168/279 (60%), Positives = 189/279 (67%), Gaps = 40/279 (14%)
Frame = -3
Query: 187 SVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLD 246
S AENSVAAKSGGCFPGSATVHLE GGTKLVKDLSPGDRVLAAD GRLLYSDFLTFLD
Sbjct: 95548 SSPAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLD 95369
Query: 247 RMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQ-------SEATGSTSG-----QA 294
R D ++K+FYVIETR+PR P ++ S +G SG +A
Sbjct: 95368 RDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALGPRA 95189
Query: 295 LFASNVKPGQRVYVLGE--GGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASC 352
LFAS V+PGQRVYV+ E G ++LLPA+VHSV+L EEA+GAYAPLTAQGTILINRVLASC
Sbjct: 95188 LFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVLASC 95009
Query: 353 YAVIEEHSWAHWAFAPFRLAQGLLAALCP--------------------------DGAIP 386
YAVIEEHSWAH AFAPFRLA LLAAL P A
Sbjct: 95008 YAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGAADA 94829
Query: 387 XXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
GIHWYS+LLY+IG+W+LD +ALHPLGM +S
Sbjct: 94828 PGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS 94712
Score = 189 bits (480), Expect = 4e-46
Identities = 89/91 (97%), Positives = 90/91 (98%)
Frame = -2
Query: 100 LMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRS 159
L +QRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRS
Sbjct: 98378 LSSQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRS 98199
Query: 160 KYGMLARLAVEAGFDWVYYESKAHIHCSVKA 190
KYGMLARLAVEAGFDWVYYESKAHIHCSVKA
Sbjct: 98198 KYGMLARLAVEAGFDWVYYESKAHIHCSVKA 98106
Score = 184 bits (466), Expect = 2e-44
Identities = 90/103 (87%), Positives = 94/103 (90%)
Frame = -2
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 60
M EMLLL R LL+ + +LLV SGL CGPGRG GKRRHPKKLTPLAYKQFIPNVAEKTLG
Sbjct: 103940 MGEMLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLG 103761
Query: 61 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
ASGRYEGKI+RNSERFKELTPNYNPDIIFKDEENTGADRLMTQ
Sbjct: 103760 ASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103632
>gb|AC002484.1|AC002484 Human cosmid clone LL157A05 from 7q36, complete sequence [Homo
sapiens]
Length = 48469
Score = 303 bits (777), Expect = 2e-80
Identities = 168/279 (60%), Positives = 189/279 (67%), Gaps = 40/279 (14%)
Frame = -3
Query: 187 SVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLD 246
S AENSVAAKSGGCFPGSATVHLE GGTKLVKDLSPGDRVLAAD GRLLYSDFLTFLD
Sbjct: 9932 SSPAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLD 9753
Query: 247 RMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQ-------SEATGSTSG-----QA 294
R D ++K+FYVIETR+PR P ++ S +G SG +A
Sbjct: 9752 RDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALGPRA 9573
Query: 295 LFASNVKPGQRVYVLGE--GGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASC 352
LFAS V+PGQRVYV+ E G ++LLPA+VHSV+L EEA+GAYAPLTAQGTILINRVLASC
Sbjct: 9572 LFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVLASC 9393
Query: 353 YAVIEEHSWAHWAFAPFRLAQGLLAALCP--------------------------DGAIP 386
YAVIEEHSWAH AFAPFRLA LLAAL P A
Sbjct: 9392 YAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGAADA 9213
Query: 387 XXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
GIHWYS+LLY+IG+W+LD +ALHPLGM +S
Sbjct: 9212 PGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS 9096
Score = 189 bits (480), Expect = 4e-46
Identities = 89/91 (97%), Positives = 90/91 (98%)
Frame = -2
Query: 100 LMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRS 159
L +QRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRS
Sbjct: 12762 LSSQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRS 12583
Query: 160 KYGMLARLAVEAGFDWVYYESKAHIHCSVKA 190
KYGMLARLAVEAGFDWVYYESKAHIHCSVKA
Sbjct: 12582 KYGMLARLAVEAGFDWVYYESKAHIHCSVKA 12490
Score = 184 bits (466), Expect = 2e-44
Identities = 90/103 (87%), Positives = 94/103 (90%)
Frame = -2
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 60
M EMLLL R LL+ + +LLV SGL CGPGRG GKRRHPKKLTPLAYKQFIPNVAEKTLG
Sbjct: 18324 MGEMLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLG 18145
Query: 61 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
ASGRYEGKI+RNSERFKELTPNYNPDIIFKDEENTGADRLMTQ
Sbjct: 18144 ASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 18016
>gb|AF031480.1|AF031480 Ambystoma mexicanum sonic hedgehog mRNA, partial cds
Length = 452
Score = 288 bits (737), Expect = 7e-76
Identities = 140/150 (93%), Positives = 142/150 (94%)
Frame = +3
Query: 86 DIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYE 145
DIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYE
Sbjct: 3 DIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYE 182
Query: 146 GRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGS 205
GRAVDITTSDRDRSKYGMLARLAVEAGFDWVY+ESKAHIHCSVKAENSVAAKSGGCFP S
Sbjct: 183 GRAVDITTSDRDRSKYGMLARLAVEAGFDWVYFESKAHIHCSVKAENSVAAKSGGCFPAS 362
Query: 206 ATVHLEHGGTKLVKDLSPGDRVLAADADGR 235
A V LEHG T+ VKDL PGDRVLAAD GR
Sbjct: 363 AKVTLEHGVTRPVKDLRPGDRVLAADGQGR 452
>gb|AF144100.1|AF144100 Bos taurus sonic hedgehog mRNA, partial cds
Length = 417
Score = 287 bits (735), Expect = 1e-75
Identities = 138/139 (99%), Positives = 139/139 (99%)
Frame = +1
Query: 46 AYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRC 105
AYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRC
Sbjct: 1 AYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRC 180
Query: 106 KDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLA 165
KDKLNALAISVM+QWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLA
Sbjct: 181 KDKLNALAISVMDQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLA 360
Query: 166 RLAVEAGFDWVYYESKAHI 184
RLAVEAGFDWVYYESKAHI
Sbjct: 361 RLAVEAGFDWVYYESKAHI 417
>gb|AF113403.1|AF113403 Eleutherodactylus coqui sonic hedgehog protein (Shh1) mRNA, partial
cds
Length = 416
Score = 279 bits (713), Expect = 4e-73
Identities = 134/138 (97%), Positives = 135/138 (97%)
Frame = +3
Query: 51 IPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLN 110
IPNVAEKTLGASGRYEGKITRNSERFKELTPNYN DIIFKDEENT ADRLMTQRCKDKLN
Sbjct: 3 IPNVAEKTLGASGRYEGKITRNSERFKELTPNYNSDIIFKDEENTAADRLMTQRCKDKLN 182
Query: 111 ALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVE 170
ALAISVMN WPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDR+RSKYGMLARLAVE
Sbjct: 183 ALAISVMNLWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRERSKYGMLARLAVE 362
Query: 171 AGFDWVYYESKAHIHCSV 188
AGFDWVYYESKAHIHCSV
Sbjct: 363 AGFDWVYYESKAHIHCSV 416
>gb|AF056116.1|AF056116 Fugu rubripes serine/threonine kinase receptor type1, All-1 related
protein (ALR), fugu hedgehog (fhh), Ikaros-like, wnt1,
wnt10b, ARF3, erbB3, PAS1, and L41 ribosomal protein
genes, complete cds; LRP1 gene, partial cds; and unknown
genes
Length = 148640
Score = 259 bits (661), Expect = 4e-67
Identities = 156/375 (41%), Positives = 201/375 (53%), Gaps = 61/375 (16%)
Frame = -2
Query: 104 RCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGM 163
RCKD LN LA++VMNQWPGV LRVTE WDEDGHH SLHYEGRAVDITT DR+ KYG+
Sbjct: 36163 RCKDCLNRLALAVMNQWPGVHLRVTEAWDEDGHHPPGSLHYEGRAVDITTDDRETEKYGL 35984
Query: 164 LARLAVEAGFDWVYYESKAHIHCSVK-------------------------AENSVAAKS 198
LA+LAVEAGFDWV+YESK HIHCSVK A++SVA +
Sbjct: 35983 LAQLAVEAGFDWVHYESKYHIHCSVKAGESKGSEDAGGAGPRHTSDHLSLSADHSVAVEK 35804
Query: 199 GGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVI 258
GGCFPG + V + G K + L+PGDRV+A G++++S L FL R SR F +
Sbjct: 35803 GGCFPGWSRVTVAGGFQKSLSSLTPGDRVMALSETGQVVFSPVLLFLHRDPESRWRFLSL 35624
Query: 259 ETRQPRXXXXXXXXXXXXXXPQH----NQSEATGSTSGQALFASNVKPGQRVYVLGEGGQ 314
+T R P H + S+ QA FAS + G V V GG
Sbjct: 35623 QTEDGR---------RLAVTPHHLVFSDAHCGPDSSQYQAQFASRAQTGTCVLVHTAGG- 35474
Query: 315 QLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRL--- 371
++ P+ + S++ EE+ GAYAPLT G++ ++ VLAS YA++E+H AHWAF P RL
Sbjct: 35473 EVHPSRIVSIT-EEESVGAYAPLTEAGSVFVDGVLASSYALVEDHQLAHWAFGPVRLLSS 35297
Query: 372 ------------AQGLLAALCPDGAI-----------------PXXXXXXXGIHWYSRLL 402
+ G L P + +HWY++LL
Sbjct: 35296 VSQLLWAEPEERSDGSKTPLQPHALVRGDRKVCARNSTSVRSEAGPRGRTSEVHWYAQLL 35117
Query: 403 YRIGSWVLDGDALHP 417
+R+G VL+ D HP
Sbjct: 35116 HRLGWIVLNPDLFHP 35072
Score = 119 bits (297), Expect = 7e-25
Identities = 59/93 (63%), Positives = 66/93 (70%)
Frame = -3
Query: 11 LLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKIT 70
LL + C LV CGPG G G R P+KL + YKQF PN++E LGASGR EGKIT
Sbjct: 38028 LLAAWSCVWLVQG---CGPGPGYGIRTRPRKLKAMYYKQFFPNLSENNLGASGRAEGKIT 37858
Query: 71 RNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
RNSERF EL NYNPDI+FKDEENT ADR MT+
Sbjct: 37857 RNSERFNELVCNYNPDIVFKDEENTNADRFMTK 37759
>gb|AF162914.1|AF162914 Rattus norvegicus indian hedgehog protein mRNA, partial cds
Length = 533
Score = 258 bits (658), Expect = 1e-66
Identities = 123/164 (75%), Positives = 137/164 (83%)
Frame = +3
Query: 100 LMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRS 159
LMTQRCKD+LN+LAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+
Sbjct: 3 LMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRN 182
Query: 160 KYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVK 219
KYG+LARLAVEAGFDWVYYESKAH+HCSVK+E+S AAK+GGCFP A VHLE G +
Sbjct: 183 KYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVHLETGERVALS 362
Query: 220 DLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIETRQP 263
+ PGDRVLA DG +SD L FLDR + + F VIET+ P
Sbjct: 363 AVKPGDRVLAMGEDGNPTFSDVLIFLDREPNRLRAFQVIETQDP 494
>gb|AF022882.1|CCSHH2 Coturnix coturnix sonic hedgehog (shh) mRNA, partial cds
Length = 469
Score = 258 bits (658), Expect = 1e-66
Identities = 125/136 (91%), Positives = 126/136 (91%)
Frame = +1
Query: 290 TSGQALFASNVKPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVL 349
TSGQA FASNVKPGQRVYVLGEGG+QLLPASVHSVSLREEASGAYAPLTAQGTILINRVL
Sbjct: 4 TSGQAFFASNVKPGQRVYVLGEGGRQLLPASVHSVSLREEASGAYAPLTAQGTILINRVL 183
Query: 350 ASCYAVIEEHSWAHWAFAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWV 409
SCYAVIEEHSWAHWAFAPFRLAQGLLAALCPDGAIP GIHWYSRLLY IGSWV
Sbjct: 184 TSCYAVIEEHSWAHWAFAPFRLAQGLLAALCPDGAIPFAGTTTTGIHWYSRLLYHIGSWV 363
Query: 410 LDGDALHPLGMVAPAS 425
LDGDALHPLGMVAPAS
Sbjct: 364 LDGDALHPLGMVAPAS 411
>gb|AF117742.1|AF117742 Junonia coenia hedgehog protein (hh) mRNA, partial cds
Length = 557
Score = 243 bits (621), Expect = 2e-62
Identities = 117/170 (68%), Positives = 138/170 (80%)
Frame = +2
Query: 61 ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW 120
ASG EG+ITR+ E+F++L PNYNPDI FKD+E TGADRLMTQRCK+KLN LAISVMNQW
Sbjct: 8 ASGPPEGRITRDDEKFRDLVPNYNPDIDFKDDEGTGADRLMTQRCKEKLNTLAISVMNQW 187
Query: 121 PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 180
PGV+LRV EGWDE+ H + SLHYEGRAVD+TTSDRD SK GMLARLAVEAGFDWV+YE+
Sbjct: 188 PGVRLRVIEGWDEENSHLDNSLHYEGRAVDLTTSDRDHSKNGMLARLAVEAGFDWVFYEN 367
Query: 181 KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAA 230
+++IHCSVK E+SV GCFP A VH E+G + L G++VLAA
Sbjct: 368 RSYIHCSVKTESSVGT-GAGCFPSGAVVHTENGPXD-IASLKKGNKVLAA 511
>gb|AF124382.1|AF124382 Danio rerio sonic hedgehog protein (shh) gene, complete cds
Length = 6244
Score = 209 bits (533), Expect = 3e-52
Identities = 112/245 (45%), Positives = 156/245 (62%), Gaps = 2/245 (0%)
Frame = +2
Query: 183 HIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFL 242
H + + +ENSVAAKSGGCFPGSA V L+ GG K VKDL+PGD+VLAAD+ G L++SDF+
Sbjct: 5525 HCYSFMSSENSVAAKSGGCFPGSALVSLQDGGQKAVKDLNPGDKVLAADSAGNLVFSDFI 5704
Query: 243 TFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKP 302
F DR ++R++FYVIET++P + T + A +AS+V+
Sbjct: 5705 MFTDRDSTTRRVFYVIETQEPVEKITLTAAHLLFVLDNSTEDLHTMT----AAYASSVRA 5872
Query: 303 GQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWA 362
GQ+V V+ + GQ L + + EE G++AP+TA GTI+++R+LASCYAVIE+ A
Sbjct: 5873 GQKVMVVDDSGQ--LKSVIVQRIYTEEQRGSFAPVTAHGTIVVDRILASCYAVIEDQGLA 6046
Query: 363 HWAFAPFRLAQGLLAALCPDGAIPXXXXX--XXGIHWYSRLLYRIGSWVLDGDALHPLGM 420
H AFAP RL + + L P + G+HWYSRLLY++G+W+LD + LHPLGM
Sbjct: 6047 HLAFAPARLYYYVSSFLFPQNSSSRSNATLQQEGVHWYSRLLYQMGTWLLDSNMLHPLGM 6226
Query: 421 VAPAS 425
+S
Sbjct: 6227 SVNSS 6241
Score = 181 bits (459), Expect = 1e-43
Identities = 88/101 (87%), Positives = 92/101 (90%)
Frame = +1
Query: 3 EMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGAS 62
+M LLTR+LLV + LV SGL CGPGRG G+RRHPKKLTPLAYKQFIPNVAEKTLGAS
Sbjct: 250 KMRLLTRVLLVSLLTLSLVVSGLACGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGAS 429
Query: 63 GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ
Sbjct: 430 GRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 552
Score = 176 bits (445), Expect = 5e-42
Identities = 81/87 (93%), Positives = 84/87 (96%)
Frame = +1
Query: 104 RCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGM 163
RCKDKLN+LAISVMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG
Sbjct: 3868 RCKDKLNSLAISVMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGT 4047
Query: 164 LARLAVEAGFDWVYYESKAHIHCSVKA 190
L+RLAVEAGFDWVYYESKAHIHCSVKA
Sbjct: 4048 LSRLAVEAGFDWVYYESKAHIHCSVKA 4128
>dbj|AB007129.1|AB007129 Oryzias latipes mRNA for shh, partial cds
Length = 360
Score = 209 bits (531), Expect = 5e-52
Identities = 99/119 (83%), Positives = 108/119 (90%)
Frame = +2
Query: 126 RVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIH 185
RVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGFDWVYYESKAHIH
Sbjct: 2 RVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKAHIH 181
Query: 186 CSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTF 244
CSVKAE+SVAAKSGGCFPGS+TV LE+G + VKDL PGDRVLAAD DG +Y+DF+ F
Sbjct: 182 CSVKAESSVAAKSGGCFPGSSTVTLENGTQRPVKDLQPGDRVLAADYDGNPVYTDFIMF 358
>gb|AF148226.1|AF148226 Rattus norvegicus desert hedgehog protein (dhh) mRNA, partial cds
Length = 386
Score = 202 bits (515), Expect = 4e-50
Identities = 91/125 (72%), Positives = 114/125 (90%), Gaps = 2/125 (1%)
Frame = +1
Query: 26 TCGPGRG-IGKRRHPKK-LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNY 83
+CGPGRG +G+RR+ +K L PL YKQF+P++ E+TLGASG EG++TR SERF++L PNY
Sbjct: 10 SCGPGRGPVGRRRYVRKQLVPLLYKQFVPSMPERTLGASGPAEGRVTRGSERFRDLVPNY 189
Query: 84 NPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLH 143
NPDIIFKDEEN+GADRLMT+RCK+++NALAI+VMN WPGV+LRVTEGWDEDGHH+++SLH
Sbjct: 190 NPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTEGWDEDGHHAQDSLH 369
Query: 144 YEGRA 148
YEGRA
Sbjct: 370 YEGRA 384
>dbj|AB018075.1|AB010092S2 Homo sapiens hedgehog gene, exon 2
Length = 283
Score = 182 bits (463), Expect = 4e-44
Identities = 82/90 (91%), Positives = 90/90 (99%)
Frame = +2
Query: 101 MTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSK 160
++QRCKD+LN+LAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+K
Sbjct: 2 LSQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 181
Query: 161 YGMLARLAVEAGFDWVYYESKAHIHCSVKA 190
YG+LARLAVEAGFDWVYYESKAH+HCSVK+
Sbjct: 182 YGLLARLAVEAGFDWVYYESKAHVHCSVKS 271
>gb|AC097468.3| Homo sapiens chromosome 2 clone RP11-33O4, complete sequence
Length = 169741
Score = 182 bits (463), Expect = 4e-44
Identities = 82/90 (91%), Positives = 90/90 (99%)
Frame = -1
Query: 101 MTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSK 160
++QRCKD+LN+LAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+K
Sbjct: 137341 LSQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 137162
Query: 161 YGMLARLAVEAGFDWVYYESKAHIHCSVKA 190
YG+LARLAVEAGFDWVYYESKAH+HCSVK+
Sbjct: 137161 YGLLARLAVEAGFDWVYYESKAHVHCSVKS 137072
Score = 156 bits (394), Expect = 4e-36
Identities = 97/235 (41%), Positives = 122/235 (51%)
Frame = -2
Query: 191 ENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDS 250
E+S AAK+GGCFP A V LE G + + PGDRVLA DG +SD L FLDR
Sbjct: 135504 EHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPH 135325
Query: 251 SRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVLG 310
+ F VIET+ P H + A +A FAS+V+PGQ V V G
Sbjct: 135324 RLRAFQVIETQDPPRRLALTPAHLLFTADNHTEPAA----RFRATFASHVQPGQYVLVAG 135157
Query: 311 EGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFR 370
G Q PA V +VS A GAYAPLT GT+++ V+ASC+A + +H A AF P R
Sbjct: 135156 VPGLQ--PARVAAVS-THVALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLR 134986
Query: 371 LAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
L L G G+HWY +LLYR+G +L+ + HPLGM S
Sbjct: 134985 LFHSLAWGSWTPG---------EGVHWYPQLLYRLGRLLLEEGSFHPLGMSGAGS 134848
Score = 140 bits (353), Expect = 2e-31
Identities = 69/86 (80%), Positives = 74/86 (85%), Gaps = 1/86 (1%)
Frame = -3
Query: 19 LLVSSGLTCGPGRGIGKRRHP-KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFK 77
L+V + CGPGR +G RR P +KL PLAYKQF PNV EKTLGASGRYEGKI R+SERFK
Sbjct: 140048 LVVPAAWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFK 139869
Query: 78 ELTPNYNPDIIFKDEENTGADRLMTQ 103
ELTPNYNPDIIFKDEENTGADRLMTQ
Sbjct: 139868 ELTPNYNPDIIFKDEENTGADRLMTQ 139791
>gb|U59748.1|HSU59748 Human desert hedgehog (hDHH) mRNA, partial cds
Length = 285
Score = 177 bits (449), Expect = 2e-42
Identities = 79/94 (84%), Positives = 92/94 (97%)
Frame = +3
Query: 87 IIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEG 146
IIFKDEEN+GADRLMT+RCK+++NALAI+VMN WPGV+LRVTEGWDEDGHH+++SLHYEG
Sbjct: 3 IIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTEGWDEDGHHAQDSLHYEG 182
Query: 147 RAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 180
RA+DITTSDRDR+KYG+LARLAVEAGFDWVYY S
Sbjct: 183 RALDITTSDRDRNKYGLLARLAVEAGFDWVYYGS 284
>dbj|AB010993.2|AB010581S2 Homo sapiens hedgehog gene, exon 2
Length = 342
Score = 165 bits (417), Expect = 8e-39
Identities = 72/88 (81%), Positives = 85/88 (95%)
Frame = +2
Query: 103 QRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 162
QRCK+++NALAI+VMN WPGV+LRVTEGWDEDGHH+++SLHYEGRA+DITTSDRDR+KYG
Sbjct: 38 QRCKERVNALAIAVMNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYG 217
Query: 163 MLARLAVEAGFDWVYYESKAHIHCSVKA 190
+LARLAVEAGFDWVYYES+ H+H SVKA
Sbjct: 218 LLARLAVEAGFDWVYYESRNHVHVSVKA 301
>dbj|AB010994.2|AB010581S3 Homo sapiens hedgehog gene, exon 3 and complete cds
Length = 706
Score = 164 bits (414), Expect = 2e-38
Identities = 103/225 (45%), Positives = 127/225 (55%), Gaps = 4/225 (1%)
Frame = +3
Query: 190 AENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMD 249
A+NS+A ++GGCFPG+ATV L G K +++L GD VLAADA GR++ + L FLDR
Sbjct: 42 ADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVVPTPVLLFLDRDL 221
Query: 250 SSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQA----LFASNVKPGQR 305
R F +ET P P H A G +FA ++ G
Sbjct: 222 QRRASFVAVETEWPPRKLLLT--------PWHLVFAARGPAPAPGDFAPVFARRLRAGDS 377
Query: 306 VYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWA 365
V L GG L PA V V+ REEA G +APLTA GT+L+N VLASCYAV+E H WAH A
Sbjct: 378 V--LAPGGDALRPARVARVA-REEAVGVFAPLTAHGTLLVNDVLASCYAVLESHQWAHRA 548
Query: 366 FAPFRLAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
FAP RL L AL P GA+ G+HWYSRLLYR+ +L
Sbjct: 549 FAPLRLLHA-LGALLPGGAV-----QPTGMHWYSRLLYRLAEELL 665
>gb|AF071236.1|AF071236 Danio rerio desert hedgehog protein (dhh) gene, partial cds
Length = 264
Score = 157 bits (396), Expect = 2e-36
Identities = 72/88 (81%), Positives = 78/88 (87%)
Frame = +1
Query: 103 QRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 162
QRCKD L LAI+VMNQWPGV+LRVTE WDEDGHH SLHYEGRAVDITTSDRD KYG
Sbjct: 1 QRCKDCLYKLAIAVMNQWPGVRLRVTEAWDEDGHHPPGSLHYEGRAVDITTSDRDTKKYG 180
Query: 163 MLARLAVEAGFDWVYYESKAHIHCSVKA 190
+LA+LAVEAGFDWV+YESK H+HCSVKA
Sbjct: 181 LLAQLAVEAGFDWVHYESKYHVHCSVKA 264
>emb|Z97019.1|OLZ97019 Oryzias latipes mRNA for sonic hedgehog
Length = 241
Score = 155 bits (392), Expect = 7e-36
Identities = 73/80 (91%), Positives = 77/80 (96%)
Frame = +1
Query: 91 DEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVD 150
DEENTGADRLMTQRCKDKLN+LAISV+NQWPGVKLRVTEGWDEDGHH EE LHYEGRAVD
Sbjct: 1 DEENTGADRLMTQRCKDKLNSLAISVINQWPGVKLRVTEGWDEDGHHFEEFLHYEGRAVD 180
Query: 151 ITTSDRDRSKYGMLARLAVE 170
ITTSDRD+SKYG L+RLAVE
Sbjct: 181 ITTSDRDKSKYGTLSRLAVE 240
>dbj|AB018076.2|AB010092S3 Homo sapiens hedgehog gene, exon 3 and complete cds
Length = 683
Score = 154 bits (389), Expect = 1e-35
Identities = 96/235 (40%), Positives = 121/235 (50%)
Frame = +3
Query: 191 ENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDS 250
E+S AAK+GGCFP A V LE G + + PGDRVLA DG +SD L LDR
Sbjct: 12 EHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLILLDREPH 191
Query: 251 SRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVLG 310
+ F VIET+ P H + A +A FAS+V+PGQ YVL
Sbjct: 192 RLRAFQVIETQDPPRRLALTPAHLLFTADNHTEPAA----RFRATFASHVQPGQ--YVLV 353
Query: 311 EGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFR 370
G L PA V +VS A GAYAPLT GT+++ V+ASC+A + +H A AF P R
Sbjct: 354 AGAPGLQPARVAAVS-THVALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLR 530
Query: 371 LAQGLLAALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVLDGDALHPLGMVAPAS 425
L L G G+HWY +LLYR+G +L+ + HPLGM S
Sbjct: 531 LFHSLAWGSWTPG---------EGVHWYPQLLYRLGRLLLEEGSFHPLGMSGAGS 668
>gb|AC008200.4|AC008200 Drosophila melanogaster, chromosome 3R, region 94D-94E, BAC clone
BACR17P04, complete sequence
Length = 163687
Score = 152 bits (383), Expect = 7e-35
Identities = 69/92 (75%), Positives = 79/92 (85%)
Frame = -3
Query: 101 MTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSK 160
+ QRCK+KLN LA SVMN+WPG++L VTE WDED HH +ESLHYEGRAV I TSDRD+SK
Sbjct: 101846 LLQRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSK 101667
Query: 161 YGMLARLAVEAGFDWVYYESKAHIHCSVKAEN 192
YGMLARLAVEAGFDWV Y S+ HI+CSVK+ N
Sbjct: 101666 YGMLARLAVEAGFDWVSYVSRRHIYCSVKSGN 101571
Score = 107 bits (267), Expect = 2e-21
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 6/227 (2%)
Frame = -2
Query: 190 AENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMD 249
A++S+++ GCF +T LE G K + +LS GDRVL+ A+G+ +YS+ + F+DR
Sbjct: 97989 ADSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNL 97810
Query: 250 SSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVL 309
+ F + T P+ S +FA ++ +V V
Sbjct: 97809 EQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE--------SQKLTFVFADRIEEKNQVLVR 97654
Query: 310 GEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPF 369
+L P V V + G APLT +GTI++N V ASCYAVI S AHW AP
Sbjct: 97653 DVETGELRPQRVVKVG-SVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPM 97477
Query: 370 RLAQGLLA------ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
RL L A L + GIHWY+ LY++ +VL
Sbjct: 97476 RLLSTLEAWLPAKEQLHSSPKVVSSAQQQNGIHWYANALYKVKDYVL 97336
Score = 98.6 bits (244), Expect = 1e-18
Identities = 49/98 (50%), Positives = 68/98 (69%)
Frame = -3
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 109907 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 109731
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
EG I R+S +FK+L PNYN DI+F+DEE TGADRLM++
Sbjct: 109730 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSK 109617
>emb|Z11840.1|DMHDGHOGD D.melanogaster hedgehog gene DNA
Length = 19116
Score = 152 bits (383), Expect = 7e-35
Identities = 69/92 (75%), Positives = 79/92 (85%)
Frame = +2
Query: 101 MTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSK 160
+ QRCK+KLN LA SVMN+WPG++L VTE WDED HH +ESLHYEGRAV I TSDRD+SK
Sbjct: 11333 LLQRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSK 11512
Query: 161 YGMLARLAVEAGFDWVYYESKAHIHCSVKAEN 192
YGMLARLAVEAGFDWV Y S+ HI+CSVK+ N
Sbjct: 11513 YGMLARLAVEAGFDWVSYVSRRHIYCSVKSGN 11608
Score = 106 bits (265), Expect = 4e-21
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 6/227 (2%)
Frame = +3
Query: 190 AENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMD 249
A++S+++ GCF +T LE G K + +LS GDRVL+ A+G+ +YS+ + F+DR
Sbjct: 15204 ADSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNL 15383
Query: 250 SSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVL 309
+ F + T P+ S +FA ++ +V V
Sbjct: 15384 EQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE--------SQKLTFVFADRIEEKNQVLVR 15539
Query: 310 GEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPF 369
+L P V V + G APLT +GTI++N V ASCYAVI S AHW AP
Sbjct: 15540 DVETGELRPQRVVKVG-SVRSKGVVAPLTREGTIVVNSVAASCYAVINSPSLAHWGLAPM 15716
Query: 370 RLAQGLLA------ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
RL L A L + GIHWY+ LY++ +VL
Sbjct: 15717 RLLSTLEAWLPAKEQLHSSPKVVSSAQQQNGIHWYANALYKVKDYVL 15857
Score = 98.6 bits (244), Expect = 1e-18
Identities = 49/98 (50%), Positives = 68/98 (69%)
Frame = +3
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 3276 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 3452
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
EG I R+S +FK+L PNYN DI+F+DEE TGADRLM++
Sbjct: 3453 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSK 3566
>gb|AE003742.2|AE003742 Drosophila melanogaster genomic scaffold 142000013386035 section 67 of
105, complete sequence
Length = 233747
Score = 152 bits (383), Expect = 7e-35
Identities = 69/92 (75%), Positives = 79/92 (85%)
Frame = -3
Query: 101 MTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSK 160
+ QRCK+KLN LA SVMN+WPG++L VTE WDED HH +ESLHYEGRAV I TSDRD+SK
Sbjct: 19794 LLQRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSK 19615
Query: 161 YGMLARLAVEAGFDWVYYESKAHIHCSVKAEN 192
YGMLARLAVEAGFDWV Y S+ HI+CSVK+ N
Sbjct: 19614 YGMLARLAVEAGFDWVSYVSRRHIYCSVKSGN 19519
Score = 107 bits (267), Expect = 2e-21
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 6/227 (2%)
Frame = -2
Query: 190 AENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMD 249
A++S+++ GCF +T LE G K + +LS GDRVL+ A+G+ +YS+ + F+DR
Sbjct: 15937 ADSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNL 15758
Query: 250 SSRKLFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVL 309
+ F + T P+ S +FA ++ +V V
Sbjct: 15757 EQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE--------SQKLTFVFADRIEEKNQVLVR 15602
Query: 310 GEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPF 369
+L P V V + G APLT +GTI++N V ASCYAVI S AHW AP
Sbjct: 15601 DVETGELRPQRVVKVG-SVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPM 15425
Query: 370 RLAQGLLA------ALCPDGAIPXXXXXXXGIHWYSRLLYRIGSWVL 410
RL L A L + GIHWY+ LY++ +VL
Sbjct: 15424 RLLSTLEAWLPAKEQLHSSPKVVSSAQQQNGIHWYANALYKVKDYVL 15284
Score = 98.6 bits (244), Expect = 1e-18
Identities = 49/98 (50%), Positives = 68/98 (69%)
Frame = -3
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 27855 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 27679
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
EG I R+S +FK+L PNYN DI+F+DEE TGADRLM++
Sbjct: 27678 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSK 27565
>gb|AC008365.3|AC008365 Drosophila melanogaster, chromosome 3R, region 94E-94E, BAC clone
BACR03N12, complete sequence
Length = 166694
Score = 152 bits (383), Expect = 7e-35
Identities = 69/92 (75%), Positives = 79/92 (85%)
Frame = -3
Query: 101 MTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSK 160
+ QRCK+KLN LA SVMN+WPG++L VTE WDED HH +ESLHYEGRAV I TSDRD+SK
Sbjct: 2868 LLQRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSK 2689
Query: 161 YGMLARLAVEAGFDWVYYESKAHIHCSVKAEN 192
YGMLARLAVEAGFDWV Y S+ HI+CSVK+ N
Sbjct: 2688 YGMLARLAVEAGFDWVSYVSRRHIYCSVKSGN 2593
Score = 98.6 bits (244), Expect = 1e-18
Identities = 49/98 (50%), Positives = 68/98 (69%)
Frame = -3
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 10929 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 10753
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
EG I R+S +FK+L PNYN DI+F+DEE TGADRLM++
Sbjct: 10752 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSK 10639
>dbj|AB010092.1|AB010092S1 Homo sapiens hedgehog gene, exon 1
Length = 315
Score = 140 bits (353), Expect = 2e-31
Identities = 69/86 (80%), Positives = 74/86 (85%), Gaps = 1/86 (1%)
Frame = +1
Query: 19 LLVSSGLTCGPGRGIGKRRHP-KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFK 77
L+V + CGPGR +G RR P +KL PLAYKQF PNV EKTLGASGRYEGKI R+SERFK
Sbjct: 58 LVVPAAWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFK 237
Query: 78 ELTPNYNPDIIFKDEENTGADRLMTQ 103
ELTPNYNPDIIFKDEENTGADRLMTQ
Sbjct: 238 ELTPNYNPDIIFKDEENTGADRLMTQ 315
>gb|AF275308.1|AF275308 Rana catesbeiana sonic hedgehog (Shh) gene, exon 2 and partial cds
Length = 192
Score = 135 bits (339), Expect = 9e-30
Identities = 61/63 (96%), Positives = 63/63 (99%)
Frame = +2
Query: 128 TEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCS 187
TEGWDEDGHHS+ESLHYEGRAVDITTSDRDR+KYGMLARLAVEAGFDWVYYESKAHIHCS
Sbjct: 2 TEGWDEDGHHSDESLHYEGRAVDITTSDRDRNKYGMLARLAVEAGFDWVYYESKAHIHCS 181
Query: 188 VKA 190
VKA
Sbjct: 182 VKA 190
>dbj|AB030474.1|AB030474 Oryzias latipes shh gene for sonic hedgehog, partial cds, stain:Da
Length = 194
Score = 132 bits (332), Expect = 6e-29
Identities = 60/64 (93%), Positives = 62/64 (96%)
Frame = +1
Query: 119 QWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYY 178
QWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGFDWVYY
Sbjct: 1 QWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYY 180
Query: 179 ESKA 182
ESKA
Sbjct: 181 ESKA 192
>dbj|AB030473.1|AB030473 Oryzias latipes shh gene for sonic hedgehog, partial cds,
strain:HNI
Length = 194
Score = 132 bits (332), Expect = 6e-29
Identities = 60/64 (93%), Positives = 62/64 (96%)
Frame = +1
Query: 119 QWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYY 178
QWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGFDWVYY
Sbjct: 1 QWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYY 180
Query: 179 ESKA 182
ESKA
Sbjct: 181 ESKA 192
>gb|U51354.1|RHU51354 Rasbora heteromorpha sonic hedgehog (shh) gene, exon 1, partial
cds
Length = 190
Score = 131 bits (329), Expect = 1e-28
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51355.1|REU51355 Rasbora elegans sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 131 bits (329), Expect = 1e-28
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51349.1|TAU51349 Tanichthys albonubes sonic hedgehog (shh) gene, exon 1, partial
cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51352.1|PTU51352 Puntius tetrazona sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51353.1|PCU51353 Puntius conchonius sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51351.1|DRU51351 Danio rerio sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51345.1|DPU51345 Devario pathirana sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51342.1|DPU51342 Danio pulcher sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51346.1|DMU51346 Devario malabaricus sonic hedgehog (shh) gene, exon 1, partial
cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51340.1|DKU51340 Danio kerri sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51339.1|DFU51339 Danio frankei sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51350.1|DDU51350 Devario devario sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51348.1|DCU51348 Danio cf. tweediei sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51347.1|DAU51347 Danio aff. albolineatus sonic hedgehog (shh) gene, exon 1,
partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51344.1|DAU51344 Devario aequipinnatus sonic hedgehog (shh) gene, exon 1, partial
cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51356.1|CAU51356 Carassius auratus sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 130 bits (326), Expect = 3e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GRRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51343.1|RPU51343 Rasbora paviei sonic hedgehog (shh) gene, exon 1, partial cds
Length = 190
Score = 129 bits (325), Expect = 4e-28
Identities = 61/62 (98%), Positives = 62/62 (99%)
Frame = +2
Query: 34 GKRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 93
G+RRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE
Sbjct: 5 GQRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEE 184
Query: 94 NT 95
NT
Sbjct: 185NT 190
>gb|U51341.1|ACU51341 Amblypharyngodon chulabhornae sonic hedgehog (shh) gene, exon 1,
partial cds
Length = 190
Score = 129 bits (323), Expect = 7e-28
Identities = 61/61 (100%), Positives = 61/61 (100%)
Frame = +2
Query: 35 KRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEEN 94
KRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEEN
Sbjct: 8 KRRHPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEEN 187
Query: 95 T 95
T
Sbjct: 188T 190
>emb|Z62881.1|HS74G11F H.sapiens CpG island DNA genomic Mse1 fragment, clone 74g11,
forward read cpg74g11.ft1a
Length = 263
Score = 126 bits (316), Expect = 4e-27
Identities = 62/76 (81%), Positives = 66/76 (86%)
Frame = -2
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG 60
M EMLLL R LL+ + +LLV SGL CGPGRG GKRRHP KLTPLAYKQFIPNVAEKTLG
Sbjct: 229 MGEMLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPXKLTPLAYKQFIPNVAEKTLG 50
Query: 61 ASGRYEGKITRNSERF 76
ASGRYEGKI+RNSERF
Sbjct: 49 ASGRYEGKISRNSERF 2
>dbj|AB018401.1|AB018401 Homo sapiens hedgehog gene, exon 1
Length = 1491
Score = 124 bits (311), Expect = 2e-26
Identities = 64/104 (61%), Positives = 80/104 (76%), Gaps = 2/104 (1%)
Frame = +1
Query: 2 VEMLLLTRILLVGFICALLVSSGLTCGPGRG-IGKRRHPKK-LTPLAYKQFIPNVAEKTL 59
V M LLT +L + + ALL +CGPGRG +G+RR+ +K L PL YKQF+P V E+TL
Sbjct: 1165 VSMALLTNLLPLCCL-ALLALPAQSCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPERTL 1341
Query: 60 GASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
GASG EG++ R SERF++L PNYNPDIIFKDEEN+GADRLMT+
Sbjct: 1342 GASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTE 1473
>dbj|AB010581.2|AB010581S1 Homo sapiens hedgehog gene, exon 1
Length = 363
Score = 122 bits (307), Expect = 5e-26
Identities = 63/102 (61%), Positives = 79/102 (76%), Gaps = 2/102 (1%)
Frame = +1
Query: 4 MLLLTRILLVGFICALLVSSGLTCGPGRG-IGKRRHPKK-LTPLAYKQFIPNVAEKTLGA 61
M LLT +L + + ALL +CGPGRG +G+RR+ +K L PL YKQF+P V E+TLGA
Sbjct: 1 MALLTNLLPLCCL-ALLALPAQSCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPERTLGA 177
Query: 62 SGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
SG EG++ R SERF++L PNYNPDIIFKDEEN+GADRLMT+
Sbjct: 178 SGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTE 303
>dbj|AB048729.1|AB048729 Homo sapiens gene for desert hedgehog, exon 1, mutation point
Length = 350
Score = 122 bits (305), Expect = 8e-26
Identities = 63/104 (60%), Positives = 79/104 (75%), Gaps = 2/104 (1%)
Frame = +1
Query: 2 VEMLLLTRILLVGFICALLVSSGLTCGPGRG-IGKRRHPKK-LTPLAYKQFIPNVAEKTL 59
V LLT +L + + ALL +CGPGRG +G+RR+ +K L PL YKQF+P V E+TL
Sbjct: 19 VSTALLTNLLPLCCL-ALLALPAQSCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPERTL 195
Query: 60 GASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
GASG EG++ R SERF++L PNYNPDIIFKDEEN+GADRLMT+
Sbjct: 196 GASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTE 327
>emb|AJ011384.1|HVU011384 Hydra vulgaris hedgehog gene, partial
Length = 180
Score = 119 bits (298), Expect = 5e-25
Identities = 54/60 (90%), Positives = 57/60 (95%)
Frame = +1
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDW 175
VMNQWPGVK+RVTEGWDE+G H+ SLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDW
Sbjct: 1 VMNQWPGVKVRVTEGWDEEGLHASNSLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDW 180
>gb|U51362.1|RPU51362 Rasbora paviei sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (294), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51374.1|REU51374 Rasbora elegans sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (294), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51371.1|PTU51371 Puntius tetrazona sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (294), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51375.1|CAU51375 Carassius auratus sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (294), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51360.1|ACU51360 Amblypharyngodon chulabhornae sonic hedgehog gene, exon 2, partial
cds
Length = 175
Score = 117 bits (294), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51385.1|REU51385 Rasbora elegans b hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (293), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGVRLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAGF 175
>gb|U51384.1|PTU51384 Puntius tetrazona b hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (293), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGVRLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAGF 175
>gb|U51377.1|DPU51377 Danio pulcher b hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (293), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGVRLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAGF 175
>gb|U51376.1|DKU51376 Danio kerri b hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (293), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGVRLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAGF 175
>gb|U51382.1|DDU51382 Devario devario b hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (293), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGVRLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAGF 175
>gb|U51381.1|DCU51381 Danio cf. tweediei b hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (293), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGVRLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAGF 175
>gb|U51386.1|CAU51386 Carassius auratus b hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (293), Expect = 2e-24
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGVRLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAGF 175
>gb|U51368.1|TAU51368 Tanichthys albonubes sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 117 bits (292), Expect = 3e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD SKYG L+RLAVEAGF
Sbjct: 2 VMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDNSKYGTLSRLAVEAGF 175
>gb|U51372.1|RHU51372 Rasbora heteromorpha sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 116 bits (290), Expect = 4e-24
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMNQWPGVKLRVTEGWDEDGHH EESLHY+GRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNQWPGVKLRVTEGWDEDGHHLEESLHYKGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|AF359590.1|AF359590 Oryzias latipes indian hedgehog protein (IHH) gene, partial cds
Length = 406
Score = 115 bits (289), Expect = 6e-24
Identities = 53/56 (94%), Positives = 55/56 (97%)
Frame = +2
Query: 135 GHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKA 190
GHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGFDWVYYESKAHIHCSVK+
Sbjct: 2 GHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAGFDWVYYESKAHIHCSVKS 169
>gb|U51358.1|PCU51358 Pseudorasbora cf. parva sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMNQWPGV LRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNQWPGVNLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51370.1|DRU51370 Danio rerio sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51364.1|DPU51364 Devario pathirana sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51361.1|DPU51361 Danio pulcher sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51365.1|DMU51365 Devario malabaricus sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51359.1|DKU51359 Danio kerri sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51357.1|DFU51357 Danio frankei sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51369.1|DDU51369 Devario devario sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51363.1|DCU51363 Devario cf. aequipinnatus sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51367.1|DAU51367 Danio aff. tweediei sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51366.1|DAU51366 Danio aff. albolineatus sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (289), Expect = 6e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVEAGF
Sbjct: 2 VMNHWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGF 175
>gb|U51388.1|DRU51388 Danio rerio a hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (288), Expect = 8e-24
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDG+H E+SLHYEGRAVDITTSDRDR+KYGMLARLAVEAGF
Sbjct: 2 VMNMWPGVKLRVTEGWDEDGNHLEDSLHYEGRAVDITTSDRDRNKYGMLARLAVEAGF 175
>gb|U51387.1|DKU51387 Danio kerri a hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (288), Expect = 8e-24
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGVKLRVTEGWDEDG+H E+SLHYEGRAVDITTSDRDR+KYGMLARLAVEAGF
Sbjct: 2 VMNMWPGVKLRVTEGWDEDGNHFEDSLHYEGRAVDITTSDRDRNKYGMLARLAVEAGF 175
>gb|U51383.1|RHU51383 Rasbora heteromorpha b hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (288), Expect = 8e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRVTEGWDEDGHHSEESLHYEGRAVDIT SDRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGVRLRVTEGWDEDGHHSEESLHYEGRAVDITASDRDRNKYAMLARLAVEAGF 175
>gb|U51380.1|DMU51380 Devario malabaricus b hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (288), Expect = 8e-24
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPG++LRVTEGWDEDGHHSEESLHYEGRAVDITT DRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGIRLRVTEGWDEDGHHSEESLHYEGRAVDITTEDRDRNKYAMLARLAVEAGF 175
>gb|U51378.1|RPU51378 Rasbora paviei b hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (287), Expect = 1e-23
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRV EGWDEDGHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEAGF
Sbjct: 2 VMNLWPGVRLRVMEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAGF 175
>gb|U51379.1|DPU51379 Devario pathirana b hedgehog gene, exon 2, partial cds
Length = 175
Score = 115 bits (287), Expect = 1e-23
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WPGV+LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDR+KY MLARLAVEA F
Sbjct: 2 VMNLWPGVRLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYAMLARLAVEAAF 175
>gb|U51373.1|PCU51373 Puntius conchonius sonic hedgehog gene, exon 2, partial cds
Length = 175
Score = 114 bits (285), Expect = 2e-23
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMNQWPGVKLR+TEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG L+RLAVE GF
Sbjct: 2 VMNQWPGVKLRMTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVENGF 175
>gb|U51389.1|PTU51389 Puntius tetrazona a hedgehog gene, exon 2, partial cds
Length = 175
Score = 112 bits (280), Expect = 6e-23
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 116 VMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF 173
VMN WP VKLRVTEGWDEDG+H E+SLHYEGRAVDITTSDRDR+KYGMLARLAVEAGF
Sbjct: 2 VMNMWPKVKLRVTEGWDEDGNHFEDSLHYEGRAVDITTSDRDRNKYGMLARLAVEAGF 175
>gb|U68238.1|PPU68238 Pseudorasbora parva tiggy-winkle hedgehog gene, exon 2 and partial
cds
Length = 160
Score = 111 bits (277), Expect = 1e-22
Identities = 50/53 (94%), Positives = 53/53 (99%)
Frame = +1
Query: 110 NALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 162
N+LAISVMNQWPGVKLRVTEGWDEDGHHS+ESLHYEGRAVDITTSDRD+SKYG
Sbjct: 1 NSLAISVMNQWPGVKLRVTEGWDEDGHHSKESLHYEGRAVDITTSDRDKSKYG 159
>gb|U68236.1|PTU68236 Puntius tetrazona tiggy-winkle hedgehog gene, exon 2 and partial
cds
Length = 160
Score = 110 bits (275), Expect = 2e-22
Identities = 50/53 (94%), Positives = 52/53 (97%)
Frame = +1
Query: 110 NALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 162
N+LAISVMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG
Sbjct: 1 NSLAISVMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYG 159
>gb|U68240.1|DPU68240 Devario pathirana tiggy-winkle hedgehog gene, exon 2 and partial
cds
Length = 160
Score = 110 bits (275), Expect = 2e-22
Identities = 50/53 (94%), Positives = 52/53 (97%)
Frame = +1
Query: 110 NALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 162
N+LAISVMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG
Sbjct: 1 NSLAISVMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYG 159
>gb|U68239.1|DKU68239 Danio kerri tiggy-winkle hedgehog gene, exon 2 and partial cds
Length = 160
Score = 110 bits (275), Expect = 2e-22
Identities = 50/53 (94%), Positives = 52/53 (97%)
Frame = +1
Query: 110 NALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 162
N+LAISVMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG
Sbjct: 1 NSLAISVMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYG 159
>gb|U68241.1|CAU68241 Carassius auratus tiggy-winkle hedgehog gene, exon 2 and partial
cds
Length = 160
Score = 110 bits (275), Expect = 2e-22
Identities = 50/53 (94%), Positives = 52/53 (97%)
Frame = +1
Query: 110 NALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 162
N+LAISVMNQWPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG
Sbjct: 1 NSLAISVMNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYG 159
>emb|Z57700.1|HS190D9R H.sapiens CpG island DNA genomic Mse1 fragment, clone 190d9,
reverse read cpg190d9.rt1a
Length = 369
Score = 81.3 bits (199), Expect(2) = 7e-22
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = -1
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIP 52
M EMLLL R LL+ + +LLV SGL CGPGRG GKRRHP KLTPLAYKQFIP
Sbjct: 228 MGEMLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPXKLTPLAYKQFIP 73
Score = 48.5 bits (114), Expect(2) = 7e-22
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = -2
Query: 52 PNVAEKTLGASGRYEGKITRNSER 75
PNV EKTLGASGRYEGKI+RNSER
Sbjct: 74 PNVXEKTLGASGRYEGKISRNSER 3
>gb|U68237.1|DFU68237 Danio frankei tiggy-winkle hedgehog gene, exon 2 and partial cds
Length = 160
Score = 108 bits (270), Expect = 9e-22
Identities = 49/53 (92%), Positives = 51/53 (95%)
Frame = +1
Query: 110 NALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 162
N+LAISVMN WPGVKLRVTEGWDEDGHH EESLHYEGRAVDITTSDRD+SKYG
Sbjct: 1 NSLAISVMNHWPGVKLRVTEGWDEDGHHLEESLHYEGRAVDITTSDRDKSKYG 159
>gb|AF022881.1|CCSHH1 Coturnix coturnix sonic hedgehog (shh) mRNA, partial cds
Length = 194
Score = 101 bits (251), Expect = 1e-19
Identities = 48/54 (88%), Positives = 51/54 (93%)
Frame = +2
Query: 1 MVEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNV 54
M EM+LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAY+ FIP +
Sbjct: 32 MDEMMLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYRXFIPQL 193
>ref|XM_098035.1| Homo sapiens LOC151297 (LOC151297), mRNA
Length = 457
Score = 99.8 bits (247), Expect = 4e-19
Identities = 48/59 (81%), Positives = 51/59 (86%), Gaps = 1/59 (1%)
Frame = +1
Query: 28 GPGRGIGKRRHP-KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNP 85
GPGR +G RR P +KL PLAYKQF PNV EKTLGASGRYEGKI R+SERFKELTPNYNP
Sbjct: 1 GPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNP 177
>gb|L05405.1|DROHHC Drosophila melanogaster hedgehog protein (hh) gene, exon 1
Length = 952
Score = 98.6 bits (244), Expect = 1e-18
Identities = 49/98 (50%), Positives = 68/98 (69%)
Frame = +2
Query: 6 LLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASGRY 65
L + + L+ + ++ S +CGPGRG+G+ R + L PL KQ IPN++E T ASG
Sbjct: 662 LTSLVALLLIVLPMVFSPAHSCGPGRGLGRHR-ARNLYPLVLKQTIPNLSEYTNSASGPL 838
Query: 66 EGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
EG I R+S +FK+L PNYN DI+F+DEE TGADRLM++
Sbjct: 839 EGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSK 952
>ref|NM_076196.1| Caenorhabditis elegans
Length = 1848
Score = 58.5 bits (140), Expect = 1e-06
Identities = 46/154 (29%), Positives = 72/154 (45%)
Frame = +1
Query: 201 CFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIET 260
CF G V E G K++KDL GD+VL+ D + + YS + FL + D F +IET
Sbjct: 1246 CFSGDMEVETEDG-IKMIKDLKIGDKVLSMD-EAFVTYSPVIMFLHKRDEEIAEFNLIET 1419
Query: 261 RQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVLGEGGQQLLPAS 320
S+ + + + A VK ++V + ++
Sbjct: 1420 ANGHSIKLTDNHLIYV-------SDCRTRSDLKLVAAKEVKMDDCIHVTTDSNV-VIKKK 1575
Query: 321 VHSVSLREEASGAYAPLTAQGTILINRVLASCYA 354
V +S E +G Y+PLT+ G I++NRVLASC++
Sbjct: 1576 VSKISKVIE-TGIYSPLTSTGDIIVNRVLASCHS 1674
>gb|AF175209.1|AF175209 Rattus norvegicus Indian hedgehog protein (Ihh) mRNA, partial cds
Length = 379
Score = 56.6 bits (135), Expect = 4e-06
Identities = 36/97 (37%), Positives = 46/97 (47%)
Frame = +3
Query: 221 LSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXXXXXXXPQ 280
+ PGDRVLA DG +SD L FLDR + + F VIET+ P
Sbjct: 21 VKPGDRVLAMGEDGNPTFSDVLIFLDREPNRLRAFQVIETQDPPRRLALTPAHLLFIADN 200
Query: 281 HNQSEATGSTSGQALFASNVKPGQRVYVLGEGGQQLL 317
H A + +A FA++V+PGQ V V G LL
Sbjct: 201 H----AEPAARFRATFANHVQPGQYVLVAGVQASSLL 299
>ref|NM_063178.1| warthog gene
Length = 1455
Score = 55.8 bits (133), Expect = 7e-06
Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 5/198 (2%)
Frame = +1
Query: 194 VAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRK 253
VA+ CF G++ V + G K + DLS GD V+ + G++ Y+ ++L R+ ++
Sbjct: 847 VASGVPACFTGNSKV-MTPAGEKSMADLSVGDMVMTYEY-GKMTYTRVASWLHRLPDTKA 1020
Query: 254 LFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQAL-FASNVKPGQRVYVLGEG 312
F + T Q PQH +A T L +A ++ G + V +
Sbjct: 1021 AFIKLTTEQ---------GAIIDMTPQHFIYKANCVTEEMELVYAEDMTIGDCLMV--KE 1167
Query: 313 GQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIE----EHSWAHWAFAP 368
++L+ ++ S E +G YAP+T G ++++ V ASC+ V++ H++ ++A +
Sbjct: 1168 NEKLVMTTISEKSTFYE-TGVYAPMTETGDLIVDDVYASCHNVVKANTLSHTFLNFATSV 1344
Query: 369 FRLAQGLLAALCPDGAIP 386
+ + +L +L G +P
Sbjct: 1345 QQKMRSVLGSLEETGHLP 1398
>gb|U61235.1|CEU61235 Caenorhabditis elegans ZK protein mRNA, complete cds
Length = 1458
Score = 55.8 bits (133), Expect = 7e-06
Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 5/198 (2%)
Frame = +1
Query: 194 VAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRK 253
VA+ CF G++ V + G K + DLS GD V+ + G++ Y+ ++L R+ ++
Sbjct: 850 VASGVPACFTGNSKV-MTPAGEKSMADLSVGDMVMTYEY-GKMTYTRVASWLHRLPDTKA 1023
Query: 254 LFYVIETRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQAL-FASNVKPGQRVYVLGEG 312
F + T Q PQH +A T L +A ++ G + V +
Sbjct: 1024 AFIKLTTEQ---------GAIIDMTPQHFIYKANCVTEEMELVYAEDMTIGDCLMV--KE 1170
Query: 313 GQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIE----EHSWAHWAFAP 368
++L+ ++ S E +G YAP+T G ++++ V ASC+ V++ H++ ++A +
Sbjct: 1171 NEKLVMTTISEKSTFYE-TGVYAPMTETGDLIVDDVYASCHNVVKANTLSHTFLNFATSV 1347
Query: 369 FRLAQGLLAALCPDGAIP 386
+ + +L +L G +P
Sbjct: 1348 QQKMRSVLGSLEETGHLP 1401
>gb|U61288.1|CEU61288 Caenorhabditis elegans CE mRNA, partial cds
Length = 2434
Score = 52.4 bits (124), Expect = 8e-05
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 5/184 (2%)
Frame = +1
Query: 192 NSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSS 251
+++ A +G CF V G K + + GD VL AD + + ++ ++ R
Sbjct: 1726 SALVAATGACFSLDTWVTTPTG-KKRMDQIDIGDYVLTADLE-KTYFTPITLWIHREPEK 1899
Query: 252 RKLFYVIETRQPRXXXXXXXXXXXXXX--PQHNQSEATGSTSGQALFASNVKPGQRVYVL 309
+ F I T + + Q G+A+FAS+++ G V VL
Sbjct: 1900 VQEFLTIMTEYGKTLRITSRHFMYRNKCGKSYPQYIKMLPHDGEAIFASDLEVGDCVVVL 2079
Query: 310 GEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSWA---HWAF 366
+G + + S+R +G Y+PLT G I++N +LASCY+ I++++ WA+
Sbjct: 2080 YKGKYRQQKIETITRSVR---TGIYSPLTNNGRIIVNDMLASCYSEIQQNTLQTTFFWAY 2250
Query: 367 APFR 370
R
Sbjct: 2251 DKLR 2262
>emb|Z68008.1|CER08B4 Caenorhabditis elegans cosmid R08B4, complete sequence
Length = 25495
Score = 49.3 bits (116), Expect = 7e-04
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Frame = +2
Query: 292 GQALFASNVKPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLAS 351
G+A+FAS+++ G V VL +G + + S+R +G Y+PLT G I++N +LAS
Sbjct: 6938 GEAIFASDLEVGDCVVVLYKGKYRQQKIETITRSVR---TGIYSPLTNNGRIIVNDMLAS 7108
Query: 352 CYAVIEEHS------WAHWAFAPFRL 371
CY+ I++++ W A F L
Sbjct: 7109 CYSEIQQNTLQTTFFWVTGAIISFHL 7186
>ref|NM_074402.1| Hint module
Length = 1446
Score = 48.5 bits (114), Expect = 0.001
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 2/161 (1%)
Frame = +1
Query: 201 CFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGR-LLYSDFLTFLDRMDSSRKLFYVIE 259
CFP A V++ K + +L GD V A D +G + + +L R F
Sbjct: 940 CFPNDAVVNVYEKAVKRMDELEIGDWVEALDENGEDITFLPVKYWLHRDPEQEAEFLEFS 1119
Query: 260 TRQPRXXXXXXXXXXXXXXPQHNQSEATGSTSGQALFASNVKPGQRVYVL-GEGGQQLLP 318
+ N SE S +++ A V G Y+ E +
Sbjct: 1120 LDNGETFTLTEKHLVYTTECRQNSSEL--KISWESISAGKVNAGDCFYLAQSEALTKYRL 1293
Query: 319 ASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEH 359
+ + R + +G YAP+T+QG +L+N++ SC++ ++ H
Sbjct: 1294 VEILDIK-RVKKTGIYAPMTSQGHLLVNKIHTSCHSEVDHH 1413
>ref|NM_063324.1| hedgehog-like protein
Length = 3624
Score = 47.8 bits (112), Expect = 0.002
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 8/176 (4%)
Frame = +1
Query: 193 SVAAKSGG---CFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMD 249
+ A GG CF + V G K + +L GD VL + L Y F R
Sbjct: 2848 AAGAAGGGRSNCFSADSLVTTVTG-QKRMDELQIGDYVLVPSSGNVLKYEKVEMFYHREP 3024
Query: 250 SSRKLFYVIETRQPRXXXXXXXX----XXXXXXPQHNQS-EATGSTSGQALFASNVKPGQ 304
+R F V+ T+ R Q+ + + ++ +A + G+
Sbjct: 3025 KTRTNFVVLYTKSGRKLSLTGRHLLPVAECSQVEQYTMNPDGIDVAMRESKYAEKARKGE 3204
Query: 305 RVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHS 360
V + E G+ + V + G Y+P+T +G+++++ VL+SC++ +E HS
Sbjct: 3205 CVLSIDESGEVIADEIVRVGRMTNV--GIYSPMTVEGSLIVDGVLSSCFSHLESHS 3366
>ref|NM_075522.1| Hint module
Length = 3066
Score = 46.6 bits (109), Expect = 0.004
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 19/176 (10%)
Frame = +1
Query: 214 GTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIETRQPRXXXXXXXXX 273
G K + ++ GD VL AD L+S ++ R + + F I+T +
Sbjct: 2440 GKKRMDEIEIGDYVLTADLK-TALFSAITLWIHREPETVQEFLEIKTDNGKTLQLTAGHF 2616
Query: 274 XXXXX----PQHNQSEATGSTS------------GQALFASNVKPGQRVYVLGEGGQQLL 317
P N S + + AS +K G+ + + G Q
Sbjct: 2617 IYATECRYLPSKNSSLLNSTPERYRHLIDTLPDDSETKLASQLKIGECLLI--HNGDQFR 2790
Query: 318 PASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEH---SWAHWAFAPFR 370
+ S+S + ++G Y+PLT G IL+N VLASCY+ ++++ + WAF R
Sbjct: 2791 MQKIDSIS-KTVSTGIYSPLTENGRILVNDVLASCYSEVQQNVLQTTFFWAFDRLR 2955
>gb|AC084464.1|AC084464 Caenorhabditis briggsae cosmid CB038P16, complete sequence
Length = 99890
Score = 43.9 bits (102), Expect = 0.028
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +2
Query: 201 CFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIET 260
CF G V E G KL+KDL GD+VL+ D + + YS + FL + D + F +IET
Sbjct: 6425 CFSGDMEVETEDG-VKLIKDLKIGDKVLSMD-EAFVTYSPIIMFLHKRDDEKAEFNLIET 6598
Score = 39.7 bits (91), Expect = 0.53
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Frame = +1
Query: 331 SGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWAFAPFRLAQGLLAALC------PDGA 384
+G Y+PLT+ G I++NRVLASC++ + S F+ ++ G+ + DG+
Sbjct: 6838 TGIYSPLTSTGDIIVNRVLASCHSNLALKSLQQTFFSLYKRTSGVFNSFALFKTSQDDGS 7017
Query: 385 IP 386
+P
Sbjct: 7018 LP 7023
>emb|Z81560.1|CEK02E2 Caenorhabditis elegans cosmid K02E2, complete sequence
Length = 37059
Score = 43.5 bits (101), Expect = 0.037
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +3
Query: 297 ASNVKPGQRVYVLGEGGQQLLPASVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVI 356
AS +K G+ + + G Q + S+S + ++G Y+PLT G IL+N VLASCY+ +
Sbjct: 16146 ASQLKIGECLLI--HNGDQFRMQKIDSIS-KTVSTGIYSPLTENGRILVNDVLASCYSEV 16316
Query: 357 EEH 359
+++
Sbjct: 16317 QQN 16325
>gb|U88183.1|CELZK377 Caenorhabditis elegans cosmid ZK377
Length = 32786
Score = 40.4 bits (93), Expect = 0.31
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +3
Query: 201 CFPGSATVHLEHGGTKLVKDLSPGDRVLAADADGRLLYSDFLTFLDRMDSSRKLFYVIET 260
CF G V E G K++KDL GD+VL+ D + + YS + FL + D F +IET
Sbjct: 30750 CFSGDMEVETEDG-IKMIKDLKIGDKVLSMD-EAFVTYSPVIMFLHKRDEEIAEFNLIET 30923
Score = 36.6 bits (83), Expect = 4.5
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +1
Query: 331 SGAYAPLTAQGTILINRVLASCYA 354
+G Y+PLT+ G I++NRVLASC++
Sbjct: 31153 TGIYSPLTSTGDIIVNRVLASCHS 31224
>emb|Z81142.1|CEZK1037 Caenorhabditis elegans cosmid ZK1037, complete sequence
Length = 30392
Score = 38.5 bits (88), Expect = 1.2
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = -1
Query: 327 REEASGAYAPLTAQGTILINRVLASCYAVIEEH 359
R + +G YAP+T+QG +L+N++ SC++ ++ H
Sbjct: 26870 RVKKTGIYAPMTSQGHLLVNKIHTSCHSEVDHH 26772
>emb|Z49968.1|CEM110 Caenorhabditis elegans cosmid M110, complete sequence
Length = 34100
Score = 37.0 bits (84), Expect = 3.5
Identities = 12/29 (41%), Positives = 24/29 (82%)
Frame = +2
Query: 332 GAYAPLTAQGTILINRVLASCYAVIEEHS 360
G Y+P+T +G+++++ VL+SC++ +E HS
Sbjct: 1223 GIYSPMTVEGSLIVDGVLSSCFSHLESHS 1309
>dbj|D50651.1|D50651 Rhodocyclus tenuis pufL and pufM genes for photosynthetic reaction
center L and M subunits, partial cds
Length = 1547
Score = 35.8 bits (81), Expect = 7.7
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = -3
Query: 137 HSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYE--SKAHIHCSVKAENSV 194
H + H EG V + +DR+R R VE G D Y AH H + + E+ V
Sbjct: 1404 HESDGEHVEGIVVQVAVTDRER-------RRPVEVGEDAERYGFGPAAHHHRADETEHQV 1246
Query: 195 AAKSGGCFPGSATVHLEHGGTKL 217
G PG H E G +
Sbjct: 1245 QPDRRGKRPGDVRAHAERNGAAI 1177
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 12, 2002 2:19 AM
Number of letters in database: 566,364,212
Number of sequences in database: 1,171,752
Lambda K H
0.319 0.136 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,354,354,303
Number of Sequences: 1171752
Number of extensions: 32994717
Number of successful extensions: 149723
Number of sequences better than 10.0: 300
Number of HSP's better than 10.0 without gapping: 41285
Number of HSP's successfully gapped in prelim test: 6345
Number of HSP's that attempted gapping in prelim test: 89115
Number of HSP's gapped (non-prelim): 86293
length of query: 425
length of database: 1,620,443,836
effective HSP length: 138
effective length of query: 287
effective length of database: 1,458,742,060
effective search space: 418658971220
effective search space used: 418658971220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)