TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(456 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,171,752 sequences; 566,364,212 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_000461.1| Homo sapiens thyroid hormone receptor, bet... 876 0.0
emb|X04707.1|HSERBAR Human c-erb-A mRNA for thyroid hormone... 876 0.0
gb|M26747.1|HUMCERBA Human c-erbA mRNA, complete cds 876 0.0
ref|XM_002986.3| Homo sapiens thyroid hormone receptor, bet... 865 0.0
gb|S62756.1|S62756 hormone receptor beta subunit [mice, thy... 834 0.0
gb|J03933.1|RATCERBAB Rat thyroid receptor hormone beta (c-... 825 0.0
gb|J03819.1|RATT3REC Rattus norvegicus (clone erb62) thyroi... 824 0.0
emb|Z68307.1|OAERBABT1 O.aries mRNA for thyroid hormone rec... 746 0.0
ref|NM_009380.1| Mus musculus thyroid hormone receptor beta... 680 0.0
emb|Z50188.1|GGBETATHR G.gallus mRNA for beta-thyroid hormo... 662 0.0
emb|Z49151.1|CMBTHR C.moschata mRNA for beta-thyroid hormon... 662 0.0
emb|X17504.1|GGTHRB Chicken mRNA for thyroid hormone recept... 662 0.0
gb|M65207.1|CHKTRB Chicken beta-thyroid hormone receptor (T... 647 0.0
gb|L27344.1|RANCERBAB Rana catesbeiana (c-erbA-beta) mRNA, ... 642 0.0
gb|M35359.1|XELBETA X.laevis thyroid hormone receptor beta ... 641 0.0
gb|M35360.1|XELBETAB X.laevis thyroid hormone receptor beta... 641 0.0
gb|M35362.1|XELBETAD X.laevis thyroid hormone receptor beta... 638 0.0
gb|M35361.1|XELBETAC X.laevis thyroid hormone receptor beta... 638 0.0
gb|AF109732.1|AF109732 Danio rerio thyroid hormone receptor... 623 e-176
gb|AF302252.1|AF302252 Salmo salar thyroid hormone receptor... 611 e-173
gb|AF302251.1|AF302251 Salmo salar thyroid hormone receptor... 603 e-171
dbj|D45245.1|PAITHRB Flounder mRNA for thyroid hormone rece... 602 e-170
emb|Y00987.1|GGCERBAR Chicken c-erbA mRNA for thyroid hormo... 592 e-167
emb|Z50080.1|CMATHREC C.moschata mRNA for alpha-thyroid hor... 592 e-167
emb|AJ002363.1|APAJ2363 Aptenodytes patagonicus mRNA for al... 590 e-167
emb|AJ005797.1|SSAJ5797 Sus scrofa mRNA for thyroid hormone... 581 e-164
emb|X07750.1|MMCERBA1 Mouse c-erbA alpha1 mRNA for thyroid ... 581 e-164
emb|X12744.1|RNCERBATR Rat mRNA for c-erb-A thyroid hormone... 581 e-164
emb|Z68308.1|OAERBAAL1 O.aries mRNA for thyroid hormone rec... 581 e-164
gb|BC008851.1|BC008851 Homo sapiens, thyroid hormone recept... 580 e-164
gb|M24748.1|HUMTHRA1A Human thyroid hormone receptor alpha ... 580 e-164
emb|X55005.1|HSCERBAR Homo sapiens mRNA for thyroid hormone... 580 e-164
gb|L76285.1|XELXLTH Xenopus laevis thyroid hormone alpha B ... 579 e-163
gb|M18028.1|RATTHR Rat thyroid hormone receptor mRNA, compl... 579 e-163
emb|X51983.1|MMCERBA Mouse c-erbA-alpha mRNA for thyroid ho... 579 e-163
gb|M35343.1|XELTHYA Xenopus laevis thyroid hormone receptor... 578 e-163
emb|X17385.1|XLTHR Xenopus mRNA for thyroid hormone receptor 577 e-163
gb|L06064.1|RANCERBAA Rana catesbeiana c-erbA-alpha mRNA, c... 577 e-163
emb|AJ002300.1|PAAJ2300 Pygoscelis adeliae mRNA for thyroid... 577 e-163
gb|M35344.1|XELTHYB X.laevis thyroid hormone receptor alpha... 572 e-161
gb|AF146775.1|AF146775 Salmo salar thyroid hormone receptor... 570 e-161
gb|M17870.1|ACBERBAR Avian erythroblastosis virus strain ES... 568 e-160
gb|U54796.1|DRU54796 Danio rerio thyroid hormone receptor a... 568 e-160
dbj|D16462.1|PAITHRAB Japanese flounder mRNA for thyroid ho... 566 e-159
emb|X12707.1|AEVPDNA Avian erythroblastosis virus provirus ... 565 e-159
emb|Y00044.1|REAEVERB Avian erythroblastosis virus gag, erb... 565 e-159
gb|K02006.1|ACBERBA Avian erythroblastosis virus polyprotei... 565 e-159
gb|M32090.1|ACBERBABG Avian erythroblastosis virus gag, erb... 565 e-159
gb|M17869.1|ACBERBATD Avian erythroblastosis virus strain E... 565 e-159
gb|AF143296.1|AF143296 Hippoglossus hippoglossus thyroid ho... 564 e-159
emb|X52211.1|AEVVER Avian erythroblastosis virus v-erb-A an... 562 e-158
dbj|D16461.1|PAITHRAA1 Japanese flounder mRNA for thyroid h... 561 e-158
emb|X07752.1|MMCERBA3 Mouse c-erbA alpha3 mRNA for thyroid ... 542 e-152
emb|X07409.1|RNTRAVI Rat c-erb-A alpha mRNA for T3 receptor... 541 e-152
emb|AJ005798.1|SSAJ5798 Sus scrofa mRNA for thyroid hormone... 541 e-152
emb|X07751.1|MMCERBA2 Mouse c-erbA alpha2 mRNA for thyroid ... 541 e-152
gb|M24899.1|HUMEAR7A Human triiodothyronine (ear7) mRNA, co... 540 e-152
gb|J03239.1|HUMTHRA2A Human c-erbA-alpha-2 gene encoding th... 540 e-152
gb|BC000261.1|BC000261 Homo sapiens, thyroid hormone recept... 540 e-152
ref|XM_083987.1| Homo sapiens thyroid hormone receptor, alp... 540 e-152
ref|XM_008585.3| Homo sapiens thyroid hormone receptor, alp... 540 e-152
gb|BC002728.1|BC002728 Homo sapiens, thyroid hormone recept... 540 e-152
ref|NM_003250.1| Homo sapiens thyroid hormone receptor, alp... 538 e-151
emb|Y00479.1|HSERBT1 H.sapiens mRNA for thyroid hormone rec... 538 e-151
ref|NM_031134.1| Rattus norvegicus thyroid hormone receptor... 537 e-151
gb|M31174.1|RATERBAA Rat c-erbA-alpha-2-related protein mRN... 537 e-151
gb|AF302254.1|AF302254 Scophthalmus maximus thyroid hormone... 528 e-148
gb|AF302243.1|AF302243 Takifugu rubripes thyroid hormone re... 499 e-139
gb|AF302253.1|AF302253 Scophthalmus maximus thyroid hormone... 474 e-132
gb|AF302241.1|AF302241 Anguilla anguilla thyroid hormone re... 466 e-129
gb|AF302244.1|AF302244 Takifugu rubripes thyroid hormone re... 464 e-129
gb|AF302247.1|AF302247 Oreochromis niloticus thyroid hormon... 464 e-129
gb|AF302242.1|AF302242 Danio rerio thyroid hormone receptor... 446 e-123
gb|AF302248.1|AF302248 Oreochromis niloticus thyroid hormon... 439 e-121
gb|AF302240.1|AF302240 Anguilla anguilla thyroid hormone re... 398 e-109
gb|M31177.1|RATERBAA2 Rat c-erbA-alpha-2 protein mRNA, comp... 381 e-104
emb|AJ238614.1|SSC238614 Sus scrofa mRNA for thyroid hormon... 373 e-101
gb|AF322218.1|AF322218 Danio rerio thyroid hormone receptor... 367 2e-99
gb|AF302246.1|AF302246 Oncorhynchus mykiss thyroid hormone ... 362 4e-98
gb|AF302245.1|AF302245 Oncorhynchus mykiss thyroid hormone ... 350 2e-94
gb|AF302249.1|AF302249 Oreochromis niloticus thyroid hormon... 348 6e-94
gb|AF302250.1|AF302250 Salmo salar thyroid hormone receptor... 339 4e-91
gb|AY049025.1|AY049025S1 Rana pipiens thyroid hormone recep... 315 6e-84
gb|AF146777.1|AF146777 Salmo salar thyroid hormone receptor... 311 6e-83
dbj|AB057767.1|AB057767 Ciona savignyi Cs-NR1 mRNA for nucl... 281 9e-74
emb|Y16623.1|NMY16623 Necturus maculosus mRNA for thyroid h... 276 3e-72
gb|AF077403.1|AF077403 Ciona intestinalis nuclear receptor ... 258 6e-67
emb|AJ012378.1|FRU012378 Fugu rubripes mRNA for retinoic ac... 221 1e-55
ref|NM_000964.1| Homo sapiens retinoic acid receptor, alpha... 220 2e-55
emb|X06614.1|HSRRA Human mRNA for receptor of retinoic acid 220 2e-55
emb|X06538.1|HSRAR Human mRNA for retinoic acid receptor 220 2e-55
emb|Y10094.1|MSRARA M.spretus mRNA for retinoic acid recept... 220 2e-55
gb|BC008727.1|BC008727 Homo sapiens, retinoic acid receptor... 220 2e-55
gb|AF242867.1|AF242867 Synthetic construct ECFP-retinoic ac... 220 2e-55
emb|X59473.1|GGRARBETA G.gallus mRNA for retinoic acid rece... 219 3e-55
emb|AJ012379.2|FRU012379 Fugu rubripes mRNA for retinoic ac... 219 3e-55
emb|X73972.1|GGRARA1 G.gallus RAR-alpha1 mRNA for retinoic ... 219 3e-55
gb|S56656.1|S56656 retinoic acid nuclear receptor isoform a... 219 3e-55
gb|S74155.1|S74155 zRAR alpha =retinoic acid receptor alpha... 219 4e-55
emb|X57339.1|GDRARB1 G.domesticus RAR beta mRNA for retinoi... 219 4e-55
emb|X57340.1|GDRARB Chicken RAR-beta mRNA for retinoic acid... 219 4e-55
gb|AF110730.1|AF110730 Coturnix coturnix retinoic acid rece... 219 4e-55
gb|AF110729.1|AF110729 Coturnix coturnix retinoic acid rece... 219 5e-55
gb|M73779.1|HUMPMLRAR Human PML-RAR protein (PML-RAR) mRNA,... 219 5e-55
gb|S63196.1|S63196 retinoic acid receptor-beta [chickens, m... 219 5e-55
ref|NM_009024.1| Mus musculus retinoic acid receptor, alpha... 218 9e-55
emb|X07282.1|HSRARE Human mRNA for retinoic acid receptor-e... 218 9e-55
gb|M60909.1|MUSRARAP Mouse retinoic acid receptor alpha' mR... 218 9e-55
emb|X56674.1|GGRTABPB Chicken mRNA for retinoic acid bindin... 218 9e-55
emb|X57341.1|GDRARB2 G.domesticus RAR beta mRNA for retinoi... 218 9e-55
emb|Y00291.1|HSHAPRA Human hap mRNA encoding a DNA-binding ... 218 1e-54
gb|AY046944.1| Mesocricetus auratus retinoic acid receptor ... 218 1e-54
gb|AY046943.1| Mesocricetus auratus retinoic acid receptor ... 218 1e-54
ref|XM_053323.1| Homo sapiens retinoic acid receptor, beta ... 217 2e-54
emb|X17585.1|NVRARAG Newt mRNA for retinoic acid receptor a... 217 2e-54
ref|NM_000965.2| Homo sapiens retinoic acid receptor, beta ... 217 2e-54
gb|AF157483.1|AF157483 Homo sapiens retinoic acid receptor ... 217 2e-54
ref|NM_016152.2| Homo sapiens retinoic acid receptor, beta ... 217 2e-54
gb|AF342936.1|AF342936 Danio rerio retinoic acid receptor a... 217 2e-54
gb|L03398.1|ZEFRARA2A Zebrafish retinoic acid receptor alph... 217 2e-54
emb|X78335.1|GGRARA21 G.gallus retinoic acid receptor alpha... 217 2e-54
gb|S56660.1|S56660 retinoic acid nuclear receptor isoform b... 216 3e-54
gb|AF342944.1|AF342944 Danio rerio retinoic acid receptor a... 216 3e-54
gb|L03399.1|ZEFRARA2B Zebrafish retinoic acid receptor alph... 216 3e-54
emb|Z14254.1|NVRARA2M N.viridescens mRNA for retinoic acid ... 216 3e-54
emb|X87365.1|XLRNARARA X.laevis mRNA for retinoic acid rece... 216 4e-54
gb|U41743.1|HSU41743 Human nucleophosmin-retinoic acid rece... 216 5e-54
gb|U41742.1|HSU41742 Human nucleophosmin-retinoic acid rece... 216 5e-54
gb|S50916.1|S50916 PML-RAR fusion gene {fusion transcript} ... 216 5e-54
gb|S82175.1|S82175 RAR-gamma 2.2=retinoic acid receptor gam... 215 6e-54
emb|X57528.1|MMRARA M.musculus mRNA for retinoic acid recep... 215 6e-54
gb|L11445.1|XELXRARA Xenopus laevis mRNA sequence 215 6e-54
gb|S82173.1|S82173 RAR-gamma 2.1=retinoic acid receptor gam... 215 6e-54
gb|L11444.1|XELSRARG1A Xenopus laevis mRNA sequence 214 1e-53
ref|XM_029728.3| Homo sapiens retinoic acid receptor, gamma... 214 2e-53
emb|X59396.1|XLRARGB Xenopus laevis mRNA for retinoic acid ... 213 2e-53
gb|AY046945.1| Mesocricetus auratus retinoic acid receptor ... 213 2e-53
gb|M57707.1|HUMRARG Human retinoic acid receptor gamma mRNA... 213 3e-53
ref|NM_000966.1| Homo sapiens retinoic acid receptor, gamma... 213 3e-53
gb|M38258.1|HUMRARGA Human retinoic acid receptor gamma 1 m... 213 3e-53
gb|L12060.1|HUMRARG7A Homo sapiens retinoic acid receptor (... 213 3e-53
ref|NM_011244.1| Mus musculus retinoic acid receptor, gamma... 213 3e-53
gb|M24857.1|HUMHRARC Human retinoic acid receptor gamma mRN... 213 3e-53
gb|BC012923.1|BC012923 Mus musculus, Similar to retinoic ac... 213 3e-53
emb|X15848.1|MMRARG Mouse mRNA for retinoic acid receptor g... 213 3e-53
gb|BC019098.1|BC019098 Homo sapiens, retinoic acid receptor... 213 3e-53
ref|NM_031528.1| Rattus norvegicus Retinoic acid receptor, ... 213 3e-53
gb|U15211.1|RNU15211 Rattus norvegicus retinoic acid recept... 213 3e-53
gb|M34475.1|MUSRARGB Mouse retinoic acid receptor gamma (RA... 212 5e-53
gb|BC013709.1|BC013709 Mus musculus, retinoic acid receptor... 212 5e-53
gb|AF206315.1|AF206315 Ambystoma mexicanum retonoic acid re... 212 7e-53
emb|X17586.1|NVRARDG Newt mRNA for retinoic receptor delta ... 211 9e-53
gb|M34476.1|MUSRARGA Mouse retinoic acid receptor gamma (mR... 211 9e-53
gb|AF342939.1|AF342939 Danio rerio retinoic acid receptor g... 211 9e-53
gb|S74156.1|S74156 zRAR gamma =retinoic acid receptor gamma... 211 9e-53
emb|X69944.1|NVRARD1AB N.viridescens retinoic acid receptor... 211 9e-53
gb|AF206316.1|AF206316S1 Ambystoma mexicanum retonoic acid ... 211 1e-52
emb|X73973.1|GGRARG2 G.gallus RAR-gamma2 mRNA for retinoic ... 210 2e-52
dbj|D86615.1|D86615 Polyandrocarpa misakiensis mRNA for ret... 209 4e-52
ref|NM_005693.1| Homo sapiens nuclear receptor subfamily 1,... 196 4e-48
gb|U22662.1|HSU22662 Human nuclear orphan receptor LXR-alph... 196 4e-48
emb|AJ132601.1|MMU132601 Mus musculus mRNA for nuclear oxys... 194 1e-47
emb|Y11533.1|TMECDYREC T.molitor mRNA for ecdysone receptor 194 1e-47
ref|NM_013839.1| Mus musculus nuclear receptor subfamily 1,... 194 1e-47
gb|BC012646.1|BC012646 Mus musculus, Similar to nuclear rec... 194 1e-47
gb|AF085745.1|AF085745 Mus musculus nuclear orphan receptor... 194 1e-47
ref|NM_031627.1| Rattus norvegicus nuclear receptor subfami... 194 1e-47
gb|U11685.1|RNU11685 Rattus norvegicus orphan receptor RLD-... 194 1e-47
gb|AF342940.1|AF342940 Danio rerio retinoic acid receptor g... 193 3e-47
gb|L03400.1|ZEFRARGII Zebrafish retinoic acid receptor gamm... 193 3e-47
gb|AC093927.2| Homo sapiens chromosome 3 clone RP11-81I24, ... 192 7e-47
gb|AF034086.2|AF034086 Celuca pugilator ecdysteroid recepto... 189 5e-46
dbj|AB073784.1|AB073784 Paralichthys olivaceus fRAR-2 mRNA ... 186 4e-45
dbj|AB073781.1|AB073781 Paralichthys olivaceus fRARg mRNA f... 184 1e-44
dbj|AB073783.1|AB073783 Paralichthys olivaceus fRARa mRNA f... 182 4e-44
gb|AF049136.1|AF049136 Locusta migratoria ecdysone receptor... 182 4e-44
ref|NM_009473.1| Mus musculus nuclear receptor subfamily 1,... 181 1e-43
gb|U09419.1|MMU09419 Mus musculus retinoid X receptor inter... 181 1e-43
dbj|AB073782.1|AB073782 Paralichthys olivaceus fRAR-1 mRNA ... 180 2e-43
gb|U14534.1|HSU14534 Human orphan receptor mRNA, partial cds 180 2e-43
ref|NM_007121.1| Homo sapiens nuclear receptor subfamily 1,... 180 2e-43
gb|U07132.1|HSU07132 Human steroid hormone receptor Ner-I m... 180 2e-43
gb|BC007790.1|BC007790 Homo sapiens, nuclear receptor subfa... 180 2e-43
dbj|D86614.1|D86614 Polyandrocarpa misakiensis mRNA for ret... 180 3e-43
gb|AF047467.1|AF047467 Sparus aurata thyroid hormone recept... 180 3e-43
gb|U20389.1|RNU20389 Rattus norvegicus orphan nuclear recep... 179 4e-43
ref|XM_046419.3| Homo sapiens nuclear receptor subfamily 1,... 179 5e-43
ref|NM_031626.1| Rattus norvegicus nuclear receptor subfami... 178 1e-42
gb|U14533.1|RNU14533 Rattus norvegicus orphan receptor mRNA... 178 1e-42
emb|AJ224341.1|CCAJ4341 Ceratitis capitata mRNA for ecdyson... 175 9e-42
gb|U75355.1|LCU75355 Lucilia cuprina ecdysteroid receptor (... 174 1e-41
gb|AF325360.1|AF325360 Calliphora vicina ecdysone receptor ... 171 1e-40
gb|AF210733.1|AF210733 Aedes albopictus ecdysteroid recepto... 170 2e-40
gb|U15547.1|MMBTTHR6 Mus musculus beta 2 thyroid hormone re... 168 8e-40
gb|U02021.1|AAU02021 Aedes aegypti ecdysteroid receptor mRN... 168 8e-40
gb|AF405205.1|AF405205 Oncorhynchus mykiss thyroid hormone ... 167 2e-39
gb|L35266.1|BMOECDYREC Bombyx mori 20-hydroxy-ecdysone rece... 166 4e-39
emb|AJ002940.1|RNAJ2940 Rattus norvegicus mRNA for retinoic... 165 9e-39
dbj|D43943.1|BMOBMECRB1 Silkworm mRNA for ecdysone receptor... 164 1e-38
ref|XM_042458.2| Homo sapiens nuclear receptor subfamily 1,... 164 2e-38
ref|NM_005122.1| Homo sapiens nuclear receptor subfamily 1,... 164 2e-38
emb|Z30425.1|HSONHORE H.sapiens mRNA for orphan nuclear hor... 164 2e-38
gb|AF092946.1|AF092946 Metapenaeus ensis nuclear hormone re... 164 2e-38
gb|AF092030.2|AF092030 Choristoneura fumiferana ecdysone re... 162 8e-38
gb|U29531.2|CFU29531 Choristoneura fumiferana ecdysteroid r... 162 8e-38
ref|NM_005123.1| Homo sapiens nuclear receptor subfamily 1,... 161 1e-37
gb|U68233.1|HSU68233 Human farnesol receptor HRR-1 (HRR-1) ... 161 1e-37
emb|AJ002941.1|RNAJ2941 Rattus norvegicus mRNA for retinoic... 161 1e-37
emb|AJ009937.1|HSAJ9937 Homo sapiens mRNA for nuclear hormo... 159 5e-37
gb|U19812.1|MSU19812 Manduca sexta ecdysone receptor homolo... 159 7e-37
ref|NM_033013.1| Homo sapiens nuclear receptor subfamily 1,... 159 7e-37
gb|AF047893.1|SSTHRB2 Salmo salar thyroid hormone receptor-... 158 9e-37
emb|Y09009.1|HVECR H.virescens mRNA for ecdysteroid receptor 157 1e-36
emb|X75163.1|XLRNAONST X.laevis mRNA for orphan nuclear rec... 157 1e-36
gb|AF305201.1|AF305201 Xenopus laevis orphan nuclear recept... 157 1e-36
gb|AF384555.1|AF384555 Homo sapiens farnesol receptor (NR1H... 157 2e-36
gb|AF164512.1|AF164512 Danio rerio vitamin D receptor (vdr)... 156 3e-36
emb|AL590145.2|AL590145 Zebrafish DNA sequence from clone R... 156 3e-36
ref|NM_009108.1| Mus musculus nuclear receptor subfamily 1,... 155 6e-36
gb|U09416.1|MMU09416 Mus musculus retinoid X receptor inter... 155 6e-36
dbj|AB037673.1|AB037673 Paralichthys olivaceus VDRb mRNA fo... 155 6e-36
gb|BC015261.1|BC015261 Mus musculus, nuclear receptor subfa... 155 6e-36
emb|X55069.1|HSCERBA8 Human c-erbA-1 gene, exon 8 for thyro... 155 7e-36
emb|AL590963.10|AL590963 Mouse DNA sequence from clone RP23... 155 1e-35
emb|X04854.1|GGCERBA2 Chicken c-erb A gene exons 2-8 154 1e-35
gb|AF276753.1|AF276753 Gallus gallus xenobiotic receptor (C... 154 1e-35
gb|AF132752.1|OMTHRA2 Oncorhynchus mykiss thyroid hormone r... 154 2e-35
dbj|AK002513.1|AK002513 Mus musculus adult male kidney cDNA... 154 2e-35
ref|NM_021745.1| Rattus norvegicus farnesoid X activated re... 154 2e-35
gb|U18374.1|RNU18374 Rattus norvegicus farnesoid X activate... 154 2e-35
dbj|AB037674.1|AB037674 Paralichthys olivaceus VDRa mRNA fo... 152 5e-35
emb|X51548.1|DME75A Drosophila mRNA for ecdysone-inducible ... 151 1e-34
ref|NM_009803.1| Mus musculus nuclear receptor subfamily 1,... 151 1e-34
gb|AF009327.1|AF009327 Mus musculus orphan nuclear hormone ... 151 1e-34
ref|NM_022941.1| Rattus norvegicus strain Fischer nuclear r... 150 2e-34
gb|AF133095.1|AF133095 Rattus norvegicus strain Wistar Kyot... 150 2e-34
gb|AF133094.1|AF133094 Rattus norvegicus strain Fischer nuc... 150 2e-34
dbj|AK018630.1|AK018630 Mus musculus adult male cecum cDNA,... 150 2e-34
emb|AJ002942.1|RNAJ2942 Rattus norvegicus mRNA for retinoic... 145 6e-33
gb|U09417.1|MMU09417 Mus musculus retinoid X receptor inter... 144 1e-32
gb|AF332552.1|AF332552 Bombyx mori orphan nuclear receptor ... 143 4e-32
gb|AF332551.1|AF332551 Bombyx mori orphan nuclear receptor ... 143 4e-32
gb|AF332550.1|AF332550 Bombyx mori orphan nuclear receptor ... 143 4e-32
dbj|AB024904.1|AB024904 Bombyx mori mRNA for nuclear hormon... 143 4e-32
gb|AF032983.2|AF032983 Celuca pugilator retinoid X receptor... 142 5e-32
gb|U29942.1|DRU29942 Danio rerio retinoid X receptor epsilo... 142 6e-32
ref|NM_006186.1| Homo sapiens nuclear receptor subfamily 4,... 142 8e-32
emb|X75918.1|HSNOT H.sapiens mRNA for NOT 142 8e-32
gb|BC009288.1|BC009288 Homo sapiens, nuclear receptor subfa... 142 8e-32
gb|U63930.1|CFU63930 Choristoneura fumiferana hormone recep... 142 8e-32
emb|Z49825.1|HSHNF4A H.sapiens mRNA for hepatocyte nuclear ... 141 1e-31
gb|U91846.1|XLU91846 Xenopus laevis vitamin D receptor mRNA... 141 1e-31
emb|X87871.1|HSHNP4BGN H.sapiens mRNA for hepatocyte nuclea... 141 1e-31
emb|X87872.1|HSHNF4CGN H.sapiens mRNA for hepatocyte nuclea... 141 1e-31
gb|U15548.1|MMBTTHR7 Mus musculus beta 2 thyroid hormone re... 141 1e-31
emb|X87870.1|HSHNF4AGN H.sapiens mRNA for hepatocyte nuclea... 141 1e-31
ref|NM_000457.1| Homo sapiens hepatocyte nuclear factor 4, ... 141 1e-31
emb|X76930.1|HSHNF4 H.sapiens HNF4 mRNA for hepatocyte nucl... 141 1e-31
gb|S53744.1|S53744 NURR1=Nur-related factor 1 [mice, brain,... 141 1e-31
ref|NM_013613.1| Mus musculus nuclear receptor subfamily 4,... 141 1e-31
ref|NM_019328.1| Rattus norvegicus nuclear receptor subfami... 141 1e-31
gb|U01146.1|RRU01146 Rattus norvegicus Sprague Dawley nucle... 141 1e-31
gb|U72345.1|RNU72345 Rattus norvegicus orphan nuclear hormo... 141 1e-31
gb|AF264696.1|AF264696 Cloning vector pFB-ERV, complete seq... 140 2e-31
gb|S77154.1|S77154 TINUR= NGFI-B/nur77 beta-type transcript... 140 2e-31
gb|U02620.1|GME75A Galleria mellonella ecdysteroid-induced ... 140 2e-31
gb|AF098284.1|AF098284 Cloning vector pERV3, complete sequence 140 2e-31
dbj|AB030318.1|AB030318 Polyandrocarpa misakiensis PmRXR mR... 140 2e-31
gb|AF035578.1|AF035578 Amblyomma americanum retinoid X rece... 139 5e-31
gb|AF290610.1|AF290610 Salmo salar retinoic acid receptor a... 139 7e-31
gb|AF165528.1|AF165528 Aedes aegypti nuclear hormone recept... 138 9e-31
gb|AF323681.1|AF323681 Acropora millepora nuclear receptor ... 137 2e-30
gb|U09418.1|MMU09418 Mus musculus retinoid X receptor inter... 137 2e-30
gb|AF418003.1|AF418003 Mustela vison retinoid X receptor be... 137 2e-30
dbj|AB037379.1|AB037379 Tamias sibricus HNF-4 mRNA for hepa... 137 2e-30
emb|Z37526.1|XLHNF4MR X.laevis HNF4 mRNA encoding hepatocyt... 137 3e-30
emb|X66224.1|MMRXRBMR M.musculus mRNA for retinoid X recept... 137 3e-30
gb|AF263459.1|AF263459 Apis mellifera ultraspiracle protein... 136 4e-30
emb|X70700.1|XLNGFIB X.laevis NGFI-B mRNA 135 6e-30
gb|U12641.1|CJU12641 Coturnix japonica vitamin D receptor i... 135 6e-30
ref|NM_008261.1| Mus musculus hepatic nuclear factor 4 (Hnf... 135 8e-30
dbj|D29015.1|MUSHNF Mouse mRNA for hepatocyte nuclear factor 4 135 8e-30
gb|AF305214.1|AF305214 Aedes aegypti ultraspiracle isoform-... 135 1e-29
ref|NM_022180.1| Rattus norvegicus Hepatic nuclear factor 4... 135 1e-29
dbj|D10554.1|RATHNF4CL Rattus norvegicus mRNA for hepatocyt... 135 1e-29
emb|X57133.1|RNHNF4 Rat mRNA for hepatocyte nuclear factor ... 135 1e-29
gb|AF305213.1|AF305213 Aedes aegypti ultraspiracle isoform-... 135 1e-29
gb|AF242868.1|AF242868 Synthetic construct ECFP-retinoic ac... 134 1e-29
ref|NM_004133.2| Homo sapiens hepatocyte nuclear factor 4, ... 134 1e-29
emb|Z49826.2|HSHNF4G Homo sapiens mRNA for hepatocyte nucle... 134 1e-29
emb|X97226.1|CFDNGFIBP C.familiaris mRNA for orphan nuclear... 134 2e-29
gb|AF011356.1|AF011356 Gallus gallus vitamin D receptor mRN... 132 5e-29
ref|XM_005182.5| Homo sapiens hepatocyte nuclear factor 4, ... 132 5e-29
ref|XM_083884.1| Homo sapiens nuclear receptor subfamily 4,... 132 7e-29
ref|XM_006843.3| Homo sapiens similar to nuclear receptor s... 132 7e-29
gb|BC016147.1|BC016147 Homo sapiens, clone MGC:9485 IMAGE:3... 132 7e-29
dbj|D49728.1|HUMNAK1 Human NAK1 mRNA for DNA binding protei... 132 7e-29
ref|NM_013920.1| Mus musculus hepatocyte nuclear factor 4, ... 131 1e-28
emb|AJ242626.1|MMU242626 Mus musculus mRNA for hepatocyte n... 131 1e-28
emb|AJ251542.1|TMO251542 Tenebrio molitor mRNA for USP prot... 131 1e-28
gb|U06073.1|BMU06073 Bombyx mori 703 RXR type hormone recep... 131 1e-28
ref|NM_057772.1| Drosophila melanogaster Hormone receptor-l... 130 3e-28
ref|NM_057771.1| Drosophila melanogaster Hormone receptor-l... 130 3e-28
gb|AF009328.1|AF009328 Mus musculus orphan nuclear hormone ... 130 3e-28
emb|X89246.1|DMDHR38PR D.melanogaster mRNA for DHR38 protein 130 3e-28
emb|AJ002073.1|DMAJ2073 Drosophila melanogaster mRNA for ho... 130 3e-28
gb|U36762.1|DMU36762 Drosophila melanogaster nuclear hormon... 130 3e-28
gb|AY007213.1| Lucilia cuprina ultraspiracle protein mRNA, ... 129 7e-28
gb|AF016368.1|AF016368 Choristoneura fumiferana molting hor... 129 7e-28
gb|U29941.1|DRU29941 Danio rerio retinoid X receptor delta ... 129 7e-28
gb|K00613.1|ACBERBADI avian erythroblastosis virus (aev), d... 128 1e-27
ref|NM_024388.1| Rattus norvegicus immediate early gene tra... 126 4e-27
gb|U17254.1|RNU17254 Rattus norvegicus immediate early gene... 126 4e-27
gb|AF323688.1|AF323688 Acropora millepora nuclear receptor ... 126 4e-27
gb|AF035577.1|AF035577 Amblyomma americanum retinoid X rece... 126 4e-27
emb|X89247.1|BNDHR38PR B.mori mRNA for BHR38 protein 126 5e-27
gb|U44837.1|MSU44837 Manduca sexta MsUSP-1 protein (usp) mR... 126 5e-27
gb|AF045891.1|AF045891 Chironomus tentans ultraspiracle (US... 126 5e-27
gb|U82629.1|SSU82629 Sus scrofa retinoic acid receptor gamm... 125 1e-26
gb|AF367206.1| Dirofilaria immitis nuclear receptor nhr-7A ... 124 2e-26
gb|BC004770.1|BC004770 Mus musculus, nuclear receptor subfa... 124 2e-26
dbj|AK004709.1|AK004709 Mus musculus adult male lung cDNA, ... 124 2e-26
emb|X60132.1|MMN10R Mouse N10 mRNA for a nuclear hormonal b... 124 2e-26
ref|NM_010444.1| Mus musculus nuclear receptor subfamily 4,... 124 2e-26
gb|J04113.1|MUSNUR77A Mouse thyroid hormone receptor (nur/7... 124 2e-26
gb|AF323684.1|AF323684 Acropora millepora nuclear receptor ... 122 5e-26
gb|AF323683.1|AF323683 Acropora millepora nuclear receptor ... 122 5e-26
gb|M95194.1|RANTHYHOR Rana catesbeiana thyroid hormone rece... 122 9e-26
gb|AF110379.1|AF110379 Canis familiaris thyroid hormone rec... 120 2e-25
gb|U19360.1|OVU19360 Onchocerca volvulus nuclear hormone re... 118 1e-24
gb|AF170551.1|AF170551 Onchocerca volvulus nuclear hormone ... 117 3e-24
gb|AF059026.1|AF059026 Aedes aegypti nuclear transcription ... 116 4e-24
emb|X55068.1|HSCERBA9 Human c-erbA-1 gene, exon 9 for thyro... 116 5e-24
gb|AF059027.1|AF059027 Aedes aegypti nuclear transcription ... 115 7e-24
ref|NM_079409.1| Drosophila melanogaster Ecdysone-induced p... 115 7e-24
emb|X51549.1|DME75B Drosophila mRNA for ecdysone-inducible ... 115 7e-24
gb|AF367208.1| Dirofilaria immitis nuclear receptor nhr-7C ... 115 7e-24
gb|AF146776.2|SSTHRB3 Salmo salar thyroid hormone receptor-... 113 4e-23
gb|AF136372.1|AF136372 Locusta migratoria RXR (RXR) mRNA, c... 113 4e-23
dbj|AB014889.1|AB014889 Mus musculus mRNA for Nurr2, comple... 112 6e-23
emb|Y15606.1|DMHR38G Drosophila melanogaster HR38 gene 112 6e-23
ref|NG_000484.1| Drosophila melanogaster Hormone receptor-l... 112 6e-23
gb|AE003667.1|AE003667 Drosophila melanogaster genomic scaf... 112 6e-23
gb|AC093047.1| Drosophila melanogaster, chromosome 2L, regi... 112 6e-23
gb|AF132753.1|OMTHRA3 Oncorhynchus mykiss thyroid hormone r... 112 6e-23
gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence... 112 6e-23
gb|AF020187.1|AF020187 Amblyomma americanum ecdsyteroid rec... 110 2e-22
gb|AF020186.1|AF020186 Amblyomma americanum ecdysteroid rec... 110 2e-22
gb|AF020188.1|AF020188 Amblyomma americanum ecdysteroid rec... 110 2e-22
gb|U15544.1|MMBTTHR3 Mus musculus beta 2 thyroid hormone re... 108 1e-21
emb|X12794.1|HSEAR2 Human v-erbA related ear-2 gene 107 2e-21
ref|NM_005234.1| Homo sapiens nuclear receptor subfamily 2,... 107 2e-21
dbj|AB024905.1|AB024905 Bombyx mori mRNA for nuclear hormon... 107 2e-21
ref|NM_060214.1| Ligand-binding domain of nuclear hormone r... 106 4e-21
gb|S60739.1|S60739 cEcRH=ecdysteroid receptor homolog [Chir... 106 5e-21
gb|AF456453.1|AF456453 Gallus gallus orphan nuclear recepto... 105 7e-21
gb|AY049026.1|AY049025S2 Rana pipiens thyroid hormone recep... 105 7e-21
ref|NM_004959.1| Homo sapiens nuclear receptor subfamily 5,... 105 9e-21
gb|S60738.1|S60738 mE75=E75 B {B specific region} [Manduca ... 105 9e-21
emb|AJ006039.1|SAU6039 Sparus aurata mRNA for estrogen rece... 105 9e-21
ref|XM_050020.1| Homo sapiens similar to nuclear receptor s... 103 3e-20
ref|NM_079471.1| Drosophila melanogaster Ecdysone-induced p... 103 3e-20
gb|U01087.1|DMU01087 Drosophila melanogaster Canton S E78A ... 103 3e-20
gb|AF407573.1|AF407573 Taeniopygia guttata steroidogenic fa... 103 3e-20
gb|AF401742.1|AF401742 Macropus eugenii steroidogenic facto... 103 3e-20
gb|M24900.1|HUMEAR17A Human triiodothyronine recptor (THRA1... 103 3e-20
emb|X98881.1|DMNHRL D.melanogaster mRNA for nuclear hormone... 103 3e-20
gb|U15546.1|MMBTTHR5 Mus musculus beta 2 thyroid hormone re... 103 3e-20
gb|AF238308.1|AF238308 Drosophila melanogaster nuclear rece... 103 3e-20
dbj|D13569.1|BOVAD4BP Bovine mRNA for Ad4BP 103 4e-20
ref|NM_053344.1| Rattus norvegicus nuclear receptor subfami... 103 4e-20
dbj|AB000490.1|AB000490 Mouse mRNA for ELP3, complete cds 103 4e-20
ref|NM_008050.1| Mus musculus nuclear receptor subfamily 5,... 103 4e-20
dbj|D10584.1|MUSELP Mus musculus mRNA for embryonal LTR bin... 103 4e-20
gb|AF203911.1|AF203911 Equus caballus steroidogenic factor ... 103 4e-20
gb|U76388.1|HSU76388 Human steroidogenic factor 1 mRNA, com... 103 4e-20
gb|AC009255.4|AC009255 Drosophila melanogaster, chromosome ... 102 6e-20
gb|U84399.1|SSU84399 Sus scrofa steroidogenic factor-1 SF-1... 102 6e-20
gb|AY075461.1| Drosophila melanogaster RE16656 full length ... 102 6e-20
gb|AC007121.1|AC007121 Drosophila melanogaster, chromosome ... 102 6e-20
gb|AE003784.2|AE003784 Drosophila melanogaster genomic scaf... 102 6e-20
gb|M74078.1|DROECR Drosophila melanogaster ecdysone recepto... 102 6e-20
ref|XM_080969.1| Ecdysone receptor, mRNA 102 6e-20
gb|AC008339.2|AC008339 Drosophila melanogaster, chromosome ... 102 6e-20
dbj|AB002404.1|AB002404 Gallus gallus mRNA for SF-1/Ad4BP, ... 102 1e-19
gb|AF136979.1|AF136979 Sparus aurata estrogen receptor type... 102 1e-19
gb|U15545.1|MMBTTHR4 Mus musculus beta 2 thyroid hormone re... 102 1e-19
gb|AY014863.1| Clarias gariepinus fushi-tarazu factor 1-B (... 101 1e-19
gb|AF299081.1|AF299081 Ovis aries steroidogenic factor 1 mR... 101 1e-19
gb|AF288088.1|AF288088 Manduca sexta hormone receptor 4 mRN... 101 2e-19
gb|AF008302.1|AF008302 Ambystoma mexicanum developmental or... 100 2e-19
ref|NM_078135.1| nuclear hormone receptor nhr-91 100 3e-19
gb|AY014862.1| Clarias gariepinus fushi tarazu factor 1-A (... 100 3e-19
gb|AF273835.1|AF273835 Caenorhabditis elegans clone yk534g1... 100 3e-19
gb|AF273833.1|AF273833 Caenorhabditis elegans clone yk343f6... 100 3e-19
gb|U05001.1|XLU05001 Xenopus laevis Ftz-F1-related orphan r... 100 3e-19
gb|AF273834.1|AF273834 Caenorhabditis elegans clone yk507a4... 100 3e-19
dbj|AB017352.1|AB017352 Rana rugosa SF-1/Ad4BP mRNA, comple... 100 3e-19
gb|U23144.1|XLU23144 Xenopus laevis FTZ-F1-related nuclear ... 100 3e-19
emb|Y11436.1|MMTR211OR M.musculus mRNA for orphan receptor 100 4e-19
gb|U09504.1|MMU09504 Mus musculus orphan nuclear receptor R... 100 4e-19
gb|S75970.1|S75970 mTR2R1=type II zinc finger DNA binding t... 100 4e-19
ref|NM_017323.1| Rattus norvegicus TR4 orphan receptor (Tr4... 100 4e-19
gb|L27513.1|RATTR4OR Rat TR4 orphan receptor mRNA, complete... 100 4e-19
gb|U11688.1|MMU11688 Mus musculus CD-1 orphan receptor TAK1... 100 4e-19
gb|L26957.1|MUSTR2A Mus musculus orphan receptor (TR2) mRNA... 100 4e-19
ref|NM_011584.1| Mus musculus thyroid hormone receptor alph... 100 4e-19
gb|U12142.1|MMU12142 Mus musculus orphan nuclear receptor R... 100 4e-19
ref|NM_003298.1| Homo sapiens nuclear receptor subfamily 2,... 100 4e-19
gb|L27586.1|HUMTR4OR Human TR4 orphan receptor mRNA, comple... 100 4e-19
gb|U10990.1|HSU10990 Human nuclear receptor hTAK1 (hTAK1) m... 100 4e-19
gb|U30482.1|MMU30482 Mus musculus TR2 (mTR2) mRNA, complete... 100 4e-19
dbj|D16815.1|D16815 Homo sapiens mRNA for EAR-1r, complete cds 100 4e-19
ref|XM_042906.2| Homo sapiens nuclear receptor subfamily 2,... 100 4e-19
emb|X82777.1|RNREVERBB R.norvegicus mRNA for Rev-erb-Beta1 100 5e-19
gb|BC008819.1|BC008819 Homo sapiens, clone MGC:10474 IMAGE:... 100 5e-19
gb|L26398.1|RATTR2OR Rattus norvegicus orphan receptor (TR2... 100 5e-19
gb|U20796.1|RNU20796 Rattus norvegicus nuclear receptor Rev... 100 5e-19
gb|M21985.1|HUMSRTR2A Human steroid receptor TR2 mRNA, comp... 99 6e-19
gb|AF013295.1|AF013295 Xenopus laevis developmental orphan ... 99 6e-19
dbj|AB063066.1|AB063066 Macaca fascicularis brain cDNA clon... 99 6e-19
gb|AF012304.1|AF012304 Homo sapiens nuclear mitotic apparat... 99 6e-19
gb|M29959.1|HUMTR29 Human steroid receptor (TR2-9) mRNA, co... 99 6e-19
gb|S80986.1|S80986 svp[40]=svp-related nuclear receptor/ret... 99 6e-19
ref|NM_003297.1| Homo sapiens nuclear receptor subfamily 2,... 99 6e-19
gb|M29960.1|HUMTR211 Human steroid receptor (TR2-11) mRNA, ... 99 6e-19
ref|NM_011629.1| Mus musculus nuclear receptor subfamily 2,... 99 8e-19
gb|AF014926.1|AF014926 Danio rerio FTZ-F1 homolog (zFF1) mR... 99 8e-19
dbj|AB016834.1|AB016834 Oryzias latipes mRNA for FTZ-F1, co... 99 8e-19
gb|U28265.1|MMU28265 Mus musculus orphan receptor (Tr2-11) ... 99 8e-19
gb|AY034061.1| Danio rerio nuclear receptor FF1aE mRNA, com... 99 8e-19
gb|AF206314.1|AF206313S2 Ambystoma mexicanum retinoic acid ... 99 8e-19
dbj|AB035498.1|AB035498 Rana rugosa mRNA for FTZ-F1 alpha, ... 99 8e-19
dbj|AB006153.1|AB006153 Oncorhynchus mykiss mRNA for tFZR1,... 99 1e-18
emb|X80258.1|GGREVERBB G.gallus REV-ERBb mRNA 99 1e-18
gb|U93553.1|HSU93553 Human alpha1-fetoprotein transcription... 98 1e-18
gb|AF198086.1|AF198086 Danio rerio ff1b mRNA, complete cds 98 1e-18
dbj|AB002403.1|AB002403 Gallus gallus mRNA for FTF/LRH-1, c... 98 1e-18
ref|NM_003822.1| Homo sapiens nuclear receptor subfamily 5,... 98 1e-18
gb|U80251.1|HSU80251 Homo sapiens hepatocytic transcription... 98 1e-18
gb|U04898.1|HSU04898 Human orphan hormone nuclear receptor ... 98 1e-18
gb|AF203913.1|AF203913 Equus caballus steroidogenic factor ... 98 1e-18
gb|AF049102.1|AF049102 Homo sapiens alpha1-fetoprotein tran... 98 1e-18
gb|AF146343.1|AF146343 Homo sapiens CYP7A promoter binding ... 98 1e-18
gb|AF124981.1|AF124981 Bombyx mori nuclear receptor GRF (GR... 98 1e-18
gb|AF124247.1|AF124247 Homo sapiens hepatocytic transcripti... 98 1e-18
dbj|AB019246.1|AB019246 Homo sapiens mRNA for FTZ-F1 relate... 98 1e-18
ref|XM_036634.2| Homo sapiens nuclear receptor subfamily 5,... 98 1e-18
ref|NM_021742.1| Rattus norvegicus nuclear receptor subfami... 98 2e-18
ref|NM_030676.1| Mus musculus nuclear receptor subfamily 5,... 98 2e-18
dbj|AB012961.1|AB012961 Rattus norvegicus mRNA for FTZ-F1 b... 98 2e-18
dbj|AB012960.1|AB012960 Rattus norvegicus mRNA for FTZ-F1 b... 98 2e-18
gb|M81385.1|MUSLRH1A Mouse liver receptor homologous protei... 98 2e-18
gb|AF274870.1|AF274870 Aedes aegypti nuclear receptor FTZ-F... 98 2e-18
dbj|AB007453.1|AB007453 Chrysophrys major mRNA for estrogen... 98 2e-18
gb|U47280.1|RNU47280 Rattus norvegicus alpha1-fetoprotein t... 98 2e-18
emb|Y08640.1|MMTFAC M.musculus mRNA for nuclear orphan rece... 98 2e-18
dbj|AB035499.1|AB035499 Rana rugosa mRNA for FTZ-F1 beta, c... 98 2e-18
gb|BC003757.1|BC003757 Mus musculus, RAR-related orphan rec... 97 2e-18
gb|S82720.1|S82720 mROR alpha =orphan nuclear receptor [mic... 97 2e-18
gb|BC008989.1|BC008989 Mus musculus, Similar to nuclear rec... 97 2e-18
ref|NM_002943.1| Homo sapiens RAR-related orphan receptor A... 97 2e-18
gb|U04899.1|HSU04899 Human orphan hormone nuclear receptor ... 97 2e-18
emb|Z82994.1|MMZ82994 M.musculus mRNA for nuclear orphan re... 97 2e-18
ref|NM_013646.1| Mus musculus RAR-related orphan receptor a... 97 2e-18
gb|U53228.1|MMU53228 Mus musculus nuclear hormone receptor ... 97 2e-18
gb|L14611.1|HUMRZRA Human transcription factor RZR-alpha mR... 97 2e-18
gb|U04897.1|HSU04897 Human orphan hormone nuclear receptor ... 97 2e-18
dbj|D45910.1|D45910 Mus caroli mRNA for mROR4, complete cds 97 2e-18
gb|BC008831.1|BC008831 Homo sapiens, Similar to RAR-related... 97 2e-18
gb|AY058575.1| Drosophila melanogaster LD26915 full length ... 97 3e-18
gb|AF033833.1|AF033833 Trachemys scripta steroidogenic fact... 97 3e-18
ref|XM_005384.3| Homo sapiens RAR-related orphan receptor B... 97 3e-18
ref|NM_006914.1| Homo sapiens RAR-related orphan receptor B... 97 3e-18
emb|Y08639.1|HSTFAC H.sapiens mRNA for nuclear orphan recep... 97 3e-18
gb|L14610.1|RATRZRB Rat transcription factor RZR-beta gene,... 97 3e-18
emb|Y08638.1|GGTFAC G.gallus mRNA for nuclear orphan recept... 97 3e-18
gb|U32939.1|MMU32939 Mus musculus TR4 mRNA, partial cds 97 4e-18
gb|AF201958.1|AF201958 Eleutherodactylus coqui thyroid horm... 97 4e-18
gb|AF342942.1|AF342942 Danio rerio Rev-Erb beta 2 mRNA, par... 97 4e-18
emb|X53417.1|DMXR2C Drosophila mRNA for XR2C 96 5e-18
emb|X72631.1|HSREVERB1 Homo sapiens mRNA for Rev-ErbAalpha ... 96 5e-18
ref|NG_000806.1| Drosophila melanogaster alpha actinin (Act... 96 5e-18
emb|AL031765.1|DMC22E5 Drosophila melanogaster cosmid clone... 96 5e-18
gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Ro... 96 5e-18
ref|NM_021724.1| Homo sapiens nuclear receptor subfamily 1,... 96 5e-18
gb|AE003422.1|AE003422 Drosophila melanogaster genomic scaf... 96 5e-18
gb|M24898.1|HUMEAR1A Human triiodothyronine recptor (THRA1,... 96 5e-18
emb|X53379.1|DMCF1 Drosophila gene for chorion factor CF1 (... 96 5e-18
gb|AY069393.1| Drosophila melanogaster LD09973 full length ... 96 5e-18
gb|AF047892.1|SSTHRB1 Salmo salar thyroid hormone receptor-... 96 5e-18
gb|AC105055.2| Drosophila melanogaster X BAC RP98-5N9 (Rosw... 96 5e-18
emb|X52591.1|DMHREC2C Drosophila melanogaster mRNA for ster... 96 5e-18
ref|NG_000201.1| Drosophila melanogaster ultraspiracle (usp... 96 5e-18
ref|NM_057433.1| Drosophila melanogaster ultraspiracle (usp... 96 5e-18
gb|U05003.1|XLU05003 Xenopus laevis Ftz-F1-related orphan r... 96 7e-18
ref|NM_079419.1| Drosophila melanogaster ftz transcription ... 96 7e-18
gb|M63711.1|DROFTZF1A D.melanogaster FTZ-F1 mRNA, complete cds 96 7e-18
gb|M98397.1|DROSTEREC Drosophila melanogaster steroid recep... 96 7e-18
dbj|AK011108.1|AK011108 Mus musculus 13 days embryo liver c... 96 9e-18
>ref|NM_000461.1| Homo sapiens thyroid hormone receptor, beta (erythroblastic
leukemia viral (v-erb-a) oncogene homolog 2, avian)
(THRB), mRNA
Length = 1698
Score = 876 bits (2263), Expect = 0.0
Identities = 423/439 (96%), Positives = 423/439 (96%)
Frame = +1
Query: 1 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 60
MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS
Sbjct: 301 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 480
Query: 61 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 120
SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE
Sbjct: 481 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 660
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR
Sbjct: 661 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 840
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 240
LA LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF
Sbjct: 841 LAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 1020
Query: 241 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 300
LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL
Sbjct: 1021LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 1200
Query: 301 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 360
KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL
Sbjct: 1201KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 1380
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV
Sbjct: 1381DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 1560
Query: 421 TDLRMIGACHASRFLHMKV 439
TDLRMIGACHASRFLHMKV
Sbjct: 1561TDLRMIGACHASRFLHMKV 1617
>emb|X04707.1|HSERBAR Human c-erb-A mRNA for thyroid hormone receptor
Length = 1698
Score = 876 bits (2263), Expect = 0.0
Identities = 423/439 (96%), Positives = 423/439 (96%)
Frame = +1
Query: 1 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 60
MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS
Sbjct: 301 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 480
Query: 61 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 120
SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE
Sbjct: 481 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 660
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR
Sbjct: 661 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 840
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 240
LA LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF
Sbjct: 841 LAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 1020
Query: 241 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 300
LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL
Sbjct: 1021LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 1200
Query: 301 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 360
KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL
Sbjct: 1201KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 1380
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV
Sbjct: 1381DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 1560
Query: 421 TDLRMIGACHASRFLHMKV 439
TDLRMIGACHASRFLHMKV
Sbjct: 1561TDLRMIGACHASRFLHMKV 1617
>gb|M26747.1|HUMCERBA Human c-erbA mRNA, complete cds
Length = 1698
Score = 876 bits (2263), Expect = 0.0
Identities = 423/439 (96%), Positives = 423/439 (96%)
Frame = +1
Query: 1 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 60
MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS
Sbjct: 301 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 480
Query: 61 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 120
SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE
Sbjct: 481 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 660
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR
Sbjct: 661 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 840
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 240
LA LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF
Sbjct: 841 LAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 1020
Query: 241 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 300
LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL
Sbjct: 1021LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 1200
Query: 301 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 360
KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL
Sbjct: 1201KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 1380
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV
Sbjct: 1381DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 1560
Query: 421 TDLRMIGACHASRFLHMKV 439
TDLRMIGACHASRFLHMKV
Sbjct: 1561TDLRMIGACHASRFLHMKV 1617
>ref|XM_002986.3| Homo sapiens thyroid hormone receptor, beta (erythroblastic
leukemia viral (v-erb-a) oncogene homolog 2, avian)
(THRB), mRNA
Length = 1391
Score = 865 bits (2234), Expect = 0.0
Identities = 418/436 (95%), Positives = 418/436 (95%)
Frame = +3
Query: 4 NGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTSSIF 63
NGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTSSIF
Sbjct: 3 NGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTSSIF 182
Query: 64 HLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 123
HLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK
Sbjct: 183 HLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 362
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA
Sbjct: 363 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 542
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPE 243
LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQK KFLPE
Sbjct: 543 RKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPE 722
Query: 244 DIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 303
DIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC
Sbjct: 723 DIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 902
Query: 304 CMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 363
CMEIMSLRAAVRYDPESETLTLNGEMAV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT
Sbjct: 903 CMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 1082
Query: 364 EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDL 423
EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDL
Sbjct: 1083EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDL 1262
Query: 424 RMIGACHASRFLHMKV 439
RMIGACHASRFLHMKV
Sbjct: 1263RMIGACHASRFLHMKV 1310
>gb|S62756.1|S62756 hormone receptor beta subunit [mice, thyroid, mRNA, 1571 nt]
Length = 1571
Score = 834 bits (2155), Expect = 0.0
Identities = 405/439 (92%), Positives = 410/439 (93%)
Frame = +3
Query: 1 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 60
MTENGL AWDK K PDR DWKLVGMSEACLHRKSH ERR LKNEQ+SPHLIQ TWTS
Sbjct: 75 MTENGLPAWDKQKPRPDRGQDWKLVGMSEACLHRKSHVERRGALKNEQTSPHLIQATWTS 254
Query: 61 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 120
SIFHLD DDVNDQS+SSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE
Sbjct: 255 SIFHLDPDDVNDQSISSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 434
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRRTIQK+LHPSYSCKYEGKC+IDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR
Sbjct: 435 GCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 614
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 240
LA LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQK KF
Sbjct: 615 LAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKF 794
Query: 241 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 300
LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL
Sbjct: 795 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 974
Query: 301 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 360
KGCCMEIMSLRAAVRYDP+SETLTLNGEMAV RGQLKNGGLGVVSDAIFDLGMSLSSFNL
Sbjct: 975 KGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNL 1154
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV
Sbjct: 1155DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 1334
Query: 421 TDLRMIGACHASRFLHMKV 439
TDLRMIGACHASRFLHMKV
Sbjct: 1335TDLRMIGACHASRFLHMKV 1391
>gb|J03933.1|RATCERBAB Rat thyroid receptor hormone beta (c-erbA-beta) mRNA, complete cds
Length = 2430
Score = 825 bits (2131), Expect = 0.0
Identities = 402/439 (91%), Positives = 407/439 (92%)
Frame = +2
Query: 1 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 60
MTEN L AWDK K PDR DWKLVGMSEACLHRKSH ERR LKNEQ+S HLIQ TW S
Sbjct: 266 MTENRLPAWDKQKPHPDRGQDWKLVGMSEACLHRKSHVERRGALKNEQTSSHLIQATWAS 445
Query: 61 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 120
SIFHLD DDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE
Sbjct: 446 SIFHLDPDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 625
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRRTIQK+LHPSYSCKYEGKC+IDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR
Sbjct: 626 GCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 805
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 240
LA LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQK KF
Sbjct: 806 LAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKF 985
Query: 241 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 300
LPEDIGQAPIVNAPEGG+VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL
Sbjct: 986 LPEDIGQAPIVNAPEGGQVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 1165
Query: 301 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 360
KGCCMEIMSLRAAVRYDP+SETLTLNGEMAV RGQLKNGGLGVVSDAIFDLGMSLSSFNL
Sbjct: 1166KGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNL 1345
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV
Sbjct: 1346DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 1525
Query: 421 TDLRMIGACHASRFLHMKV 439
TDLRMIGACHASRFLHMKV
Sbjct: 1526TDLRMIGACHASRFLHMKV 1582
>gb|J03819.1|RATT3REC Rattus norvegicus (clone erb62) thyroid (T3) hormone receptor mRNA,
complete cds
Length = 4535
Score = 824 bits (2128), Expect = 0.0
Identities = 402/439 (91%), Positives = 406/439 (91%)
Frame = +1
Query: 1 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 60
MTE L AWDK K PDR DWKLVGMSEACLHRKSH ERR LKNEQ+S HLIQ TW S
Sbjct: 265 MTEKCLPAWDKQKPHPDRGQDWKLVGMSEACLHRKSHVERRGALKNEQTSSHLIQATWAS 444
Query: 61 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 120
SIFHLD DDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE
Sbjct: 445 SIFHLDPDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 624
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRRTIQK+LHPSYSCKYEGKC+IDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR
Sbjct: 625 GCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 804
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 240
LA LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQK KF
Sbjct: 805 LAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKF 984
Query: 241 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 300
LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL
Sbjct: 985 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 1164
Query: 301 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 360
KGCCMEIMSLRAAVRYDP+SETLTLNGEMAV RGQLKNGGLGVVSDAIFDLGMSLSSFNL
Sbjct: 1165KGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNL 1344
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV
Sbjct: 1345DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 1524
Query: 421 TDLRMIGACHASRFLHMKV 439
TDLRMIGACHASRFLHMKV
Sbjct: 1525TDLRMIGACHASRFLHMKV 1581
>emb|Z68307.1|OAERBABT1 O.aries mRNA for thyroid hormone receptor beta1
Length = 1592
Score = 746 bits (1927), Expect = 0.0
Identities = 365/407 (89%), Positives = 374/407 (91%)
Frame = +1
Query: 1 MTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTS 60
MTENGL AWDKPK CPD E +WKLVGMSEACLHRKSH ERR LK+EQS LIQ +WTS
Sbjct: 376 MTENGLPAWDKPKPCPDGEPEWKLVGMSEACLHRKSHPERRGPLKHEQSP--LIQASWTS 549
Query: 61 SIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 120
SIFHLDHDDV+DQS SAQ FQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE
Sbjct: 550 SIFHLDHDDVSDQSAPSAQAFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 729
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR
Sbjct: 730 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 909
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 240
LA LQ+S+GHKPEPTD+EWELIKTVTEAHVATNAQGSHWKQK KF
Sbjct: 910 LAKRKLIEENREKRRREELQRSMGHKPEPTDQEWELIKTVTEAHVATNAQGSHWKQKRKF 1089
Query: 241 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 300
LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL
Sbjct: 1090LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 1269
Query: 301 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 360
KGCCMEIMSLRAAVRYDPESETLTLNGEMAV R QLKNGGLGVVSDAIFDLGMSLSSFNL
Sbjct: 1270KGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRRQLKNGGLGVVSDAIFDLGMSLSSFNL 1449
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKH 407
DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR++
Sbjct: 1450DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRRN 1590
>ref|NM_009380.1| Mus musculus thyroid hormone receptor beta (Thrb), mRNA
Length = 1837
Score = 680 bits (1754), Expect = 0.0
Identities = 330/351 (94%), Positives = 333/351 (94%)
Frame = +3
Query: 89 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI 148
KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGKC+I
Sbjct: 624 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 803
Query: 149 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 208
DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA LQKSIGHKPE
Sbjct: 804 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPE 983
Query: 209 PTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 268
PTDEEWELIKTVTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFSHFT
Sbjct: 984 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 1163
Query: 269 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 328
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGE
Sbjct: 1164KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 1343
Query: 329 MAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 388
MAV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE
Sbjct: 1344MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 1523
Query: 389 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1524KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 1676
>emb|Z50188.1|GGBETATHR G.gallus mRNA for beta-thyroid hormone receptor
Length = 1171
Score = 662 bits (1708), Expect = 0.0
Identities = 322/350 (92%), Positives = 326/350 (93%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCVID
Sbjct: 43 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 222
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 223 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTIGHKPEP 402
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
TDEEWELIK VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 403 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 582
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 583 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 762
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 763 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 942
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 943 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1092
>emb|Z49151.1|CMBTHR C.moschata mRNA for beta-thyroid hormone receptor
Length = 1171
Score = 662 bits (1708), Expect = 0.0
Identities = 322/350 (92%), Positives = 326/350 (93%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCVID
Sbjct: 43 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 222
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 223 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTIGHKPEP 402
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
TDEEWELIK VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 403 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 582
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 583 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 762
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 763 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 942
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 943 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1092
>emb|X17504.1|GGTHRB Chicken mRNA for thyroid hormone receptor beta
Length = 1459
Score = 662 bits (1708), Expect = 0.0
Identities = 322/350 (92%), Positives = 326/350 (93%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCVID
Sbjct: 88 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 267
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGHKPEP
Sbjct: 268 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTIGHKPEP 447
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
TDEEWELIK VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 448 TDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 627
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 628 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 807
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 808 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 987
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 988 CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1137
>gb|M65207.1|CHKTRB Chicken beta-thyroid hormone receptor (TR-beta) mRNA, complete cds
Length = 2129
Score = 647 bits (1668), Expect = 0.0
Identities = 317/350 (90%), Positives = 322/350 (91%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEGKCVID
Sbjct: 234 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVID 413
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK++ HKPEP
Sbjct: 414 KVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTMVHKPEP 593
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
TDEEWELIK VTEAHVATNAQ SHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 594 TDEEWELIKIVTEAHVATNAQVSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 773
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLK CCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 774 IITPAITRVVDFAKKLPMFLELPCEDQIILLKVCCMEIMSLRAAVRYDPESETLTLNGEM 953
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVERIEK
Sbjct: 954 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVERIEK 1133
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1134CQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1283
>gb|L27344.1|RANCERBAB Rana catesbeiana (c-erbA-beta) mRNA, complete cds
Length = 1435
Score = 642 bits (1657), Expect = 0.0
Identities = 315/350 (90%), Positives = 322/350 (92%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID
Sbjct: 19 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 198
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++ KPEP
Sbjct: 199 KVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKDELQKTLVQKPEP 378
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEWELI+ VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 379 TPEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 558
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 559 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 738
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV RGQLKNGGLGVVSDAIFDLG+SLSSFNLDDTEVALLQAVLLMSSDRPGL+ VERIEK
Sbjct: 739 AVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDTEVALLQAVLLMSSDRPGLSSVERIEK 918
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+ FLLAFEHYINYRKH+V HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 919 CQEGFLLAFEHYINYRKHNVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1068
>gb|M35359.1|XELBETA X.laevis thyroid hormone receptor beta A1 mRNA, complete cds
Length = 1138
Score = 641 bits (1654), Expect = 0.0
Identities = 313/351 (89%), Positives = 323/351 (91%)
Frame = +1
Query: 89 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI 148
+GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI
Sbjct: 4 EGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI 183
Query: 149 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 208
DKVTRNQCQECRFKKCI VGMATDLVLDD+KRLA +QKS+ KPE
Sbjct: 184 DKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQKPE 363
Query: 209 PTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 268
PT EEWELI+ VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FT
Sbjct: 364 PTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 543
Query: 269 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 328
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE
Sbjct: 544 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 723
Query: 329 MAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 388
MAV RGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGLA VERIE
Sbjct: 724 MAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLASVERIE 903
Query: 389 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
K Q+ FLLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 904 KCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1056
>gb|M35360.1|XELBETAB X.laevis thyroid hormone receptor beta A5 mRNA, complete cds
Length = 1150
Score = 641 bits (1653), Expect = 0.0
Identities = 313/350 (89%), Positives = 322/350 (91%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID
Sbjct: 19 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 198
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI VGMATDLVLDD+KRLA +QKS+ KPEP
Sbjct: 199 KVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQKPEP 378
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEWELI+ VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 379 TQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 558
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 559 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 738
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV RGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGLA VERIEK
Sbjct: 739 AVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLASVERIEK 918
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+ FLLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 919 CQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1068
>gb|M35362.1|XELBETAD X.laevis thyroid hormone receptor beta B2 mRNA, complete cds
Length = 1255
Score = 638 bits (1646), Expect = 0.0
Identities = 312/353 (88%), Positives = 322/353 (90%)
Frame = +1
Query: 87 KCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKC 146
+ GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKC
Sbjct: 133 RVSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKC 312
Query: 147 VIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHK 206
VIDKVTRNQCQECRFKKC VGMATDLVLDDSKRLA +QKSI +
Sbjct: 313 VIDKVTRNQCQECRFKKCKTVGMATDLVLDDSKRLAKRKLIEENREKRRKDEIQKSIVQR 492
Query: 207 PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSH 266
PEPT EEWELI+ VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS
Sbjct: 493 PEPTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQ 672
Query: 267 FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLN 326
FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLN
Sbjct: 673 FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLN 852
Query: 327 GEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVER 386
GEMAV RGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGL+ VER
Sbjct: 853 GEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLSSVER 1032
Query: 387 IEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
IEK Q+ FLLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1033IEKCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1191
>gb|M35361.1|XELBETAC X.laevis thyroid hormone receptor beta B1 mRNA, complete cds
Length = 1132
Score = 638 bits (1645), Expect = 0.0
Identities = 312/350 (89%), Positives = 321/350 (91%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID
Sbjct: 19 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 198
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKC VGMATDLVLDDSKRLA +QKSI +PEP
Sbjct: 199 KVTRNQCQECRFKKCKTVGMATDLVLDDSKRLAKRKLIEENREKRRKDEIQKSIVQRPEP 378
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEWELI+ VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 379 TQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 558
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 559 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 738
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV RGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGL+ VERIEK
Sbjct: 739 AVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLSSVERIEK 918
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+ FLLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 919 CQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1068
>gb|AF109732.1|AF109732 Danio rerio thyroid hormone receptor beta 1 mRNA, complete cds
Length = 2198
Score = 623 bits (1607), Expect = e-176
Identities = 301/356 (84%), Positives = 320/356 (89%)
Frame = +3
Query: 84 EEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYE 143
+E GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+P+Y+CKYE
Sbjct: 405 DEAMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYE 584
Query: 144 GKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSI 203
GKCVIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++
Sbjct: 585 GKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREELQKTV 764
Query: 204 GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEA 263
+PEPT EEWE+I+ VTEAH+ATNAQG+HWKQK KFLPEDIG APIVNAPEG KVD+EA
Sbjct: 765 WDRPEPTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLPEDIGSAPIVNAPEGNKVDIEA 944
Query: 264 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 323
FS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TL
Sbjct: 945 FSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 1124
Query: 324 TLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLAC 383
TLNGEMAV RGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQAV+L+SSDRPGL
Sbjct: 1125TLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSDRPGLTS 1304
Query: 384 VERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
VERIE+ Q+ FLLAFEHYINYRKH V HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1305VERIERCQEEFLLAFEHYINYRKHKVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1472
>gb|AF302252.1|AF302252 Salmo salar thyroid hormone receptor beta small isoform (TR-beta2)
mRNA, complete cds
Length = 1220
Score = 611 bits (1576), Expect = e-173
Identities = 292/350 (83%), Positives = 316/350 (89%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+P+Y+CKYE KC+ID
Sbjct: 73 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCIID 252
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++ +PEP
Sbjct: 253 KVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRPEP 432
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEW+LI+ VTEAH++TNAQG+HWKQK KFLPEDIGQAP++NAPEG KVD+EAFS FTK
Sbjct: 433 SQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLPEDIGQAPVINAPEGSKVDIEAFSQFTK 612
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 613 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 792
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV RGQLKNGGLGVVSDAIFDLG+SLSSF+LDD+EVALLQ V+L+SSDRPGL V+RIE+
Sbjct: 793 AVTRGQLKNGGLGVVSDAIFDLGLSLSSFHLDDSEVALLQTVILLSSDRPGLTSVDRIER 972
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+ FLLAFEHYINYRKH V FWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 973 CQEEFLLAFEHYINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHMKV 1122
>gb|AF302251.1|AF302251 Salmo salar thyroid hormone receptor beta large isoform (TR-beta1)
mRNA, complete cds
Length = 1247
Score = 603 bits (1556), Expect = e-171
Identities = 292/359 (81%), Positives = 316/359 (87%), Gaps = 9/359 (2%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+P+Y+CKYE KC+ID
Sbjct: 73 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCIID 252
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++ +PEP
Sbjct: 253 KVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRPEP 432
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFL---------PEDIGQAPIVNAPEGGKVD 260
+ EEW+LI+ VTEAH++TNAQG+HWKQK KFL PEDIGQAP++NAPEG KVD
Sbjct: 433 SQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLSAVGVKETKPEDIGQAPVINAPEGSKVD 612
Query: 261 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 320
+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES
Sbjct: 613 IEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 792
Query: 321 ETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
ETLTLNGEMAV RGQLKNGGLGVVSDAIFDLG+SLSSF+LDD+EVALLQ V+L+SSDRPG
Sbjct: 793 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGLSLSSFHLDDSEVALLQTVILLSSDRPG 972
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
L V+RIE+ Q+ FLLAFEHYINYRKH V FWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 973 LTSVDRIERCQEEFLLAFEHYINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHMKV 1149
>dbj|D45245.1|PAITHRB Flounder mRNA for thyroid hormone receptor beta, complete cds
Length = 1369
Score = 602 bits (1553), Expect = e-170
Identities = 295/359 (82%), Positives = 315/359 (87%), Gaps = 9/359 (2%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+P+Y+CKYEGKCVID
Sbjct: 173 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVID 352
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++ + EP
Sbjct: 353 KVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRLEP 532
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFL---------PEDIGQAPIVNAPEGGKVD 260
T EEW+LI+ VTEAH+ATNAQG+HWKQK KFL PE+IGQA + N PEG KVD
Sbjct: 533 TQEEWDLIRMVTEAHMATNAQGNHWKQKRKFLSAAGVKEDKPEEIGQASMANTPEGNKVD 712
Query: 261 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 320
+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES
Sbjct: 713 IEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 892
Query: 321 ETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
ETLTLNGEMAV RGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQAV+L+SSDRPG
Sbjct: 893 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSDRPG 1072
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
L+ VERIE Q+ FLLAFEHYINYRKH + HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1073LSSVERIEPCQEEFLLAFEHYINYRKHKLAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1249
>emb|Y00987.1|GGCERBAR Chicken c-erbA mRNA for thyroid hormone receptor
Length = 1538
Score = 592 bits (1526), Expect = e-167
Identities = 287/350 (82%), Positives = 309/350 (88%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+G CVID
Sbjct: 403 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVID 582
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P P
Sbjct: 583 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSP 762
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQK KFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 763 SAEEWELIHVVTEAHRSTNAQGSHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 942
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 943 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 1122
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK
Sbjct: 1123AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEK 1302
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1303CQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1452
>emb|Z50080.1|CMATHREC C.moschata mRNA for alpha-thyroid hormone receptor
Length = 1205
Score = 592 bits (1526), Expect = e-167
Identities = 287/350 (82%), Positives = 309/350 (88%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+G CVID
Sbjct: 112 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVID 291
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P P
Sbjct: 292 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSP 471
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQK KFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 472 SAEEWELIHVVTEAHRSTNAQGSHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 651
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 652 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 831
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK
Sbjct: 832 AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEK 1011
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1012CQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1161
>emb|AJ002363.1|APAJ2363 Aptenodytes patagonicus mRNA for alpha-thyroid hormone receptor
Length = 1205
Score = 590 bits (1521), Expect = e-167
Identities = 287/350 (82%), Positives = 308/350 (88%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+G CVID
Sbjct: 112 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVID 291
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P P
Sbjct: 292 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPNP 471
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQK KFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 472 SAEEWELIHVVTEAHRSTNAQGSHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 651
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 652 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 831
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CVE+IEK
Sbjct: 832 AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVEKIEK 1011
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLRMI ACHASRFLHMKV
Sbjct: 1012CQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIRACHASRFLHMKV 1161
>emb|AJ005797.1|SSAJ5797 Sus scrofa mRNA for thyroid hormone receptor alpha 1 (c-erbA-alpha
1)
Length = 1906
Score = 581 bits (1497), Expect = e-164
Identities = 279/350 (79%), Positives = 308/350 (87%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 257 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 436
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 437 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 616
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 617 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 796
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 797 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 976
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 977 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1156
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1157SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1306
>emb|X07750.1|MMCERBA1 Mouse c-erbA alpha1 mRNA for thyroid hormone receptor
Length = 1233
Score = 581 bits (1497), Expect = e-164
Identities = 279/350 (79%), Positives = 308/350 (87%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 121 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 300
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 301 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 480
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 481 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 660
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 661 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 840
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 841 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1020
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1021SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1170
>emb|X12744.1|RNCERBATR Rat mRNA for c-erb-A thyroid hormone receptor
Length = 1775
Score = 581 bits (1497), Expect = e-164
Identities = 279/350 (79%), Positives = 308/350 (87%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 87 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 266
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 267 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 446
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 447 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 626
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 627 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 806
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 807 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 986
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 987 SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1136
>emb|Z68308.1|OAERBAAL1 O.aries mRNA for thyroid hormone receptor alpha1
Length = 2463
Score = 581 bits (1497), Expect = e-164
Identities = 279/350 (79%), Positives = 308/350 (87%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 635 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 814
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 815 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 994
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 995 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1174
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 1175IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1354
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1355AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1534
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1535SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1684
>gb|BC008851.1|BC008851 Homo sapiens, thyroid hormone receptor, clone MGC:14305
IMAGE:4137980, mRNA, complete cds
Length = 3053
Score = 580 bits (1496), Expect = e-164
Identities = 279/350 (79%), Positives = 308/350 (87%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 776 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 955
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 956 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 1135
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 1136 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1315
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 1316 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1495
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1496 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1675
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1676 SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1825
>gb|M24748.1|HUMTHRA1A Human thyroid hormone receptor alpha 1 (TR-alpha-1) gene, complete
cds
Length = 1876
Score = 580 bits (1496), Expect = e-164
Identities = 279/350 (79%), Positives = 308/350 (87%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 193 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 372
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 373 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 552
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 553 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 732
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 733 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 912
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 913 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1092
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1093SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1242
>emb|X55005.1|HSCERBAR Homo sapiens mRNA for thyroid hormone receptor alpha 1 THRA1,
(c-erbA-1 gene)
Length = 2288
Score = 580 bits (1496), Expect = e-164
Identities = 279/350 (79%), Positives = 308/350 (87%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 587 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 766
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 767 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 946
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 947 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1126
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 1127IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1306
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1307AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1486
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1487SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1636
>gb|L76285.1|XELXLTH Xenopus laevis thyroid hormone alpha B receptor mRNA, complete cds
Length = 1406
Score = 579 bits (1493), Expect = e-163
Identities = 279/350 (79%), Positives = 307/350 (87%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY+G C+ID
Sbjct: 266 GYIPSYLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 445
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ +PEP
Sbjct: 446 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRVRRRKEEMIKTLQQRPEP 625
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI+ VTEAH +TNAQGSHWKQ+ KFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 626 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 805
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEM
Sbjct: 806 IITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 985
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 986 AVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1165
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1166CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1315
>gb|M18028.1|RATTHR Rat thyroid hormone receptor mRNA, complete cds
Length = 2079
Score = 579 bits (1493), Expect = e-163
Identities = 278/350 (79%), Positives = 307/350 (87%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 445 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 624
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 625 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 804
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 805 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 984
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 985 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1164
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
V R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1165TVKRKQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1344
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1345SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1494
>emb|X51983.1|MMCERBA Mouse c-erbA-alpha mRNA for thyroid hormone receptor
Length = 1440
Score = 579 bits (1492), Expect = e-163
Identities = 278/350 (79%), Positives = 307/350 (87%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 125 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 304
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRN CQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 305 KITRNHCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 484
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 485 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 664
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 665 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 844
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 845 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1024
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1025SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1174
>gb|M35343.1|XELTHYA Xenopus laevis thyroid hormone receptor alpha A mRNA, complete cds
Length = 1406
Score = 578 bits (1489), Expect = e-163
Identities = 278/350 (79%), Positives = 306/350 (87%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY+G C+ID
Sbjct: 266 GYIPSYLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 445
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDD KR+A + K++ +PEP
Sbjct: 446 KITRNQCQLCRFKKCIAVGMAMDLVLDDGKRVAKRKLIEENRQRRRKEEMIKTLQQRPEP 625
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI+ VTEAH +TNAQGSHWKQ+ KFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 626 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 805
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEM
Sbjct: 806 IITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 985
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 986 AVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1165
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1166CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1315
>emb|X17385.1|XLTHR Xenopus mRNA for thyroid hormone receptor
Length = 2301
Score = 577 bits (1488), Expect = e-163
Identities = 278/350 (79%), Positives = 307/350 (87%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPS+LDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY+G C+ID
Sbjct: 604 GYIPSHLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 783
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ +PEP
Sbjct: 784 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRQRRRKEEMIKTLQQRPEP 963
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI+ VTEAH +TNAQGSHWKQ+ KFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 964 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 1143
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEM
Sbjct: 1144IITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 1323
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 1324AVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1503
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1504CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1653
>gb|L06064.1|RANCERBAA Rana catesbeiana c-erbA-alpha mRNA, complete cds
Length = 1490
Score = 577 bits (1488), Expect = e-163
Identities = 279/350 (79%), Positives = 305/350 (86%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYL KDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY+G C+ID
Sbjct: 165 GYIPSYLTKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 344
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ +PEP
Sbjct: 345 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKTLQQRPEP 524
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI+ VTEAH +TNAQGSHWKQ+ KFLPEDIGQ P+ + P+ KVDLEAFS FTK
Sbjct: 525 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQNPMASMPDSDKVDLEAFSEFTK 704
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEM
Sbjct: 705 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 884
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 885 AVKREQLKNGGLGVVSDAIFDLGRSLSAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1064
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1065CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1214
>emb|AJ002300.1|PAAJ2300 Pygoscelis adeliae mRNA for thyroid hormone receptor alpha
Length = 1205
Score = 577 bits (1487), Expect = e-163
Identities = 282/350 (80%), Positives = 303/350 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITC GCKGFFRRTIQKNLHP+YSCKY+G CVID
Sbjct: 112 GYIPSYLDKDEQCVVCGDKATGYHYRCITCAGCKGFFRRTIQKNLHPTYSCKYDGCCVID 291
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVL DSKR+A + KS+ H+P P
Sbjct: 292 KITRNQCQLCRFKKCISVGMAMDLVLYDSKRVAKRKLIEENRERRRKEEMIKSLQHRPNP 471
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQK KFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 472 SAEEWELIHVVTEAHRSTNAQGSHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 651
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPE TLTL+GEM
Sbjct: 652 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPEGGTLTLSGEM 831
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGL VVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CVE+IEK
Sbjct: 832 AVKREQLKNGGLRVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVEKIEK 1011
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLRMI ACHASRFLHMKV
Sbjct: 1012CQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIRACHASRFLHMKV 1161
>gb|M35344.1|XELTHYB X.laevis thyroid hormone receptor alpha B mRNA, complete cds
Length = 1406
Score = 572 bits (1473), Expect = e-161
Identities = 277/350 (79%), Positives = 304/350 (86%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY+G C+ID
Sbjct: 266 GYIPSYLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 445
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DL LDDSKR+A + K++ PEP
Sbjct: 446 KITRNQCQLCRFKKCIAVGMAMDLDLDDSKRVAKRKLIEEDRVRRRKEEMIKTLQQCPEP 625
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI+ VTEAH +TNAQGSHWKQ+ KFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 626 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 805
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEM
Sbjct: 806 IITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 985
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 986 AVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1165
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHAS FLHMKV
Sbjct: 1166CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASCFLHMKV 1315
>gb|AF146775.1|AF146775 Salmo salar thyroid hormone receptor alpha (TR-alpha) mRNA,
complete cds
Length = 1436
Score = 570 bits (1470), Expect = e-161
Identities = 279/366 (76%), Positives = 307/366 (83%)
Frame = +3
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKN 133
S S ++ +GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKN
Sbjct: 231 STCSVKSMSALSLSVQGYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKN 410
Query: 134 LHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXX 193
LHP+YSCKY+G C+IDK+TRNQCQ CRF+KCI V MA DLVLDDSKR+A
Sbjct: 411 LHPAYSCKYDGCCIIDKITRNQCQLCRFRKCIAVCMAMDLVLDDSKRVAKRRLIEENREK 590
Query: 194 XXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNA 253
+ K++ +PEP EWELI+ VTEAH TNAQGSHWKQK KFLPEDIGQ+P
Sbjct: 591 RKKDEIVKTLQARPEPDSSEWELIRHVTEAHRHTNAQGSHWKQKRKFLPEDIGQSPRAPT 770
Query: 254 PEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 313
P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAA
Sbjct: 771 PDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 950
Query: 314 VRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLL 373
VRYDPESETLTL+GEMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDD+EVALLQAVLL
Sbjct: 951 VRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDSEVALLQAVLL 1130
Query: 374 MSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASR 433
MSSDR GL V++IEK Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASR
Sbjct: 1131MSSDRSGLTLVDKIEKCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASR 1310
Query: 434 FLHMKV 439
FLHMKV
Sbjct: 1311FLHMKV 1328
>gb|M17870.1|ACBERBAR Avian erythroblastosis virus strain ES4, mutant td r12 polyprotein
gene, partial cds
Length = 1751
Score = 568 bits (1464), Expect = e-160
Identities = 279/350 (79%), Positives = 301/350 (85%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHP+YSC Y+G CVID
Sbjct: 666 GYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCVID 845
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P P
Sbjct: 846 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSP 1025
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQ+ KFL EDIGQ+P+ + +G KVDLEAFS FTK
Sbjct: 1026 SAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEFTK 1205
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 1206 IITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 1385
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK
Sbjct: 1386 AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEK 1565
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+S+LLAFEHYINYRKH++ HFWPKLLMKV DLRMIGA HASRFLHMKV
Sbjct: 1566 CQESYLLAFEHYINYRKHNIPHFWPKLLMKVADLRMIGAYHASRFLHMKV 1715
>gb|U54796.1|DRU54796 Danio rerio thyroid hormone receptor alpha 1 (TRa1) mRNA, complete
cds
Length = 2200
Score = 568 bits (1464), Expect = e-160
Identities = 283/395 (71%), Positives = 316/395 (79%)
Frame = +3
Query: 45 KNEQSSPHLIQTTWTSSIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVV 104
+ E + P +T W + + S S + + GY+PSYL+KDE CVV
Sbjct: 378 EQEHNLPEGDETQWPNGVKRK-----RKNSQCSMNSTSDKSISVPGYVPSYLEKDEPCVV 542
Query: 105 CGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKC 164
CGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY+ C+IDK+TRNQCQ CRF+KC
Sbjct: 543 CGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFRKC 722
Query: 165 IYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAH 224
I VGMA DLVLDDSKR+A + K++ ++PEPT EWELI+ VTEAH
Sbjct: 723 ISVGMAMDLVLDDSKRVAKRRLIEENREKRKKEEIVKTLHNRPEPTVSEWELIRMVTEAH 902
Query: 225 VATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKK 284
TNAQG HWKQK KFLPEDIGQ+P + + KVDLEAFS FTKIITPAITRVVDFAKK
Sbjct: 903 RHTNAQGPHWKQKRKFLPEDIGQSPAPTS-DNDKVDLEAFSEFTKIITPAITRVVDFAKK 1079
Query: 285 LPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVV 344
LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEMAV R QLKNGGLGVV
Sbjct: 1080LPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVSREQLKNGGLGVV 1259
Query: 345 SDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINY 404
SDAIFDLG SLS FNLDD+EVALLQAVLLMSSDR GL CVE+IEK Q+ +LLAFEHYIN+
Sbjct: 1260SDAIFDLGKSLSQFNLDDSEVALLQAVLLMSSDRSGLTCVEKIEKCQEMYLLAFEHYINH 1439
Query: 405 RKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
RKH+++HFWPKLLMKVT+LRMIGACHASRFLHMKV
Sbjct: 1440RKHNISHFWPKLLMKVTNLRMIGACHASRFLHMKV 1544
>dbj|D16462.1|PAITHRAB Japanese flounder mRNA for thyroid hormone receptor alpha B,
complete cds
Length = 1273
Score = 566 bits (1458), Expect = e-159
Identities = 276/351 (78%), Positives = 303/351 (85%), Gaps = 1/351 (0%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY+ C+ID
Sbjct: 82 GYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDCCCIID 261
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ ++PEP
Sbjct: 262 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLIEENRERRKKEEIVKTLQNRPEP 441
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EWELI+ VTEAH TNAQG+ WKQK KFLP+ IGQ+P+ +G KVDLEAFS FTK
Sbjct: 442 TGAEWELIRMVTEAHRHTNAQGAQWKQKRKFLPDKIGQSPVAPTSDGDKVDLEAFSEFTK 621
Query: 270 IITPAITRVVDFAKKLPMFCE-LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 328
IITPAITRVVDFAKKLPMF E LPCEDQIILLKGCCMEIMSLRAA+RYDPESETLTL+GE
Sbjct: 622 IITPAITRVVDFAKKLPMFSEQLPCEDQIILLKGCCMEIMSLRAAMRYDPESETLTLSGE 801
Query: 329 MAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 388
MAV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVALLQAVLLMSSDR GL C+++IE
Sbjct: 802 MAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVALLQAVLLMSSDRSGLTCMDKIE 981
Query: 389 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
K Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 982 KCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1134
>emb|X12707.1|AEVPDNA Avian erythroblastosis virus provirus DNA (pCR-1)
Length = 6373
Score = 565 bits (1456), Expect = e-159
Identities = 278/350 (79%), Positives = 300/350 (85%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHP+YSC Y+G CVID
Sbjct: 2350 GYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCVID 2529
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P P
Sbjct: 2530 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSP 2709
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQ+ KFL EDIGQ+P+ + +G KVDLEAFS FTK
Sbjct: 2710 SAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEFTK 2889
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 2890 IITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 3069
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK
Sbjct: 3070 AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEK 3249
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKV
Sbjct: 3250 CQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKV 3399
>emb|Y00044.1|REAEVERB Avian erythroblastosis virus gag, erbA and erbB sequences
Length = 2354
Score = 565 bits (1456), Expect = e-159
Identities = 278/350 (79%), Positives = 300/350 (85%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHP+YSC Y+G CVID
Sbjct: 584 GYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCVID 763
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P P
Sbjct: 764 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSP 943
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQ+ KFL EDIGQ+P+ + +G KVDLEAFS FTK
Sbjct: 944 SAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEFTK 1123
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 1124IITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 1303
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK
Sbjct: 1304AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEK 1483
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKV
Sbjct: 1484CQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKV 1633
>gb|K02006.1|ACBERBA Avian erythroblastosis virus polyprotein gag-p75-erbA and erbB
protein genes, partial cds
Length = 2012
Score = 565 bits (1456), Expect = e-159
Identities = 278/350 (79%), Positives = 300/350 (85%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHP+YSC Y+G CVID
Sbjct: 244 GYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCVID 423
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P P
Sbjct: 424 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSP 603
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQ+ KFL EDIGQ+P+ + +G KVDLEAFS FTK
Sbjct: 604 SAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEFTK 783
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 784 IITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 963
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK
Sbjct: 964 AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEK 1143
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKV
Sbjct: 1144CQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKV 1293
>gb|M32090.1|ACBERBABG Avian erythroblastosis virus gag, erbA and erbB sequences
Length = 1944
Score = 565 bits (1456), Expect = e-159
Identities = 278/350 (79%), Positives = 300/350 (85%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHP+YSC Y+G CVID
Sbjct: 585 GYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCVID 764
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P P
Sbjct: 765 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSP 944
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQ+ KFL EDIGQ+P+ + +G KVDLEAFS FTK
Sbjct: 945 SAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEFTK 1124
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 1125IITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 1304
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK
Sbjct: 1305AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEK 1484
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKV
Sbjct: 1485CQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKV 1634
>gb|M17869.1|ACBERBATD Avian erythroblastosis virus strain ES4, mutant td 359 polyprotein
gene, partial cds
Length = 1670
Score = 565 bits (1455), Expect = e-159
Identities = 278/350 (79%), Positives = 300/350 (85%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQKNLHP+YSC Y+G CVID
Sbjct: 585 GYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCVID 764
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P
Sbjct: 765 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSR 944
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQ+ KFL EDIGQ+P+ + +G KVDLEAFS FTK
Sbjct: 945 SAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEFTK 1124
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 1125IITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 1304
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK
Sbjct: 1305AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEK 1484
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+S+LLAFEHYINYRKH++ HFWPKLLMKV DLRMIGA HASRFLHMKV
Sbjct: 1485CQESYLLAFEHYINYRKHNIPHFWPKLLMKVADLRMIGAYHASRFLHMKV 1634
>gb|AF143296.1|AF143296 Hippoglossus hippoglossus thyroid hormone receptor-alpha mRNA,
complete cds
Length = 1392
Score = 564 bits (1453), Expect = e-159
Identities = 274/350 (78%), Positives = 300/350 (85%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKYEG C+ID
Sbjct: 280 GYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIID 459
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +PEP
Sbjct: 460 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKREEMVRTLQVRPEP 639
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
EWELI+ T+AH TNAQGS WKQK KFL +DIGQ P+V +G KVDLEAFS FTK
Sbjct: 640 DTAEWELIRMATDAHRHTNAQGSSWKQKRKFLSDDIGQGPMVPTSDGDKVDLEAFSEFTK 819
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
I+TPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM
Sbjct: 820 IMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 999
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVAL+QAVLLMSSDR GL +E+IE+
Sbjct: 1000AVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVALMQAVLLMSSDRSGLTSLEKIEQ 1179
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1180CQEAYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1329
>emb|X52211.1|AEVVER Avian erythroblastosis virus v-erb-A and v-erb-B oncogenes
Length = 3110
Score = 562 bits (1448), Expect = e-158
Identities = 276/350 (78%), Positives = 299/350 (84%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPS LDKDE CVVCGDK TGYHYRCITCEGCK FFRRTIQKNLHP+YSC Y+G CVID
Sbjct: 136 GYIPSCLDKDEQCVVCGDKPTGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCVID 315
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H+P P
Sbjct: 316 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSP 495
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
+ EEWELI VTEAH +TNAQGSHWKQ+ KFL EDIGQ+P+ + +G KVDLEAF+ FTK
Sbjct: 496 SAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFTEFTK 675
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEM
Sbjct: 676 IITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 855
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK
Sbjct: 856 AVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEK 1035
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKV
Sbjct: 1036CQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKV 1185
>dbj|D16461.1|PAITHRAA1 Japanese flounder mRNA for thyroid hormone receptor alpha A,
complete cds
Length = 1411
Score = 561 bits (1445), Expect = e-158
Identities = 272/350 (77%), Positives = 298/350 (84%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG C+ID
Sbjct: 291 GYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIID 470
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +PEP
Sbjct: 471 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKREEMVRTLQIRPEP 650
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
EWELI+ T+AH TNAQGS WKQK KFL +DIGQ+P+V +G KVDLEAFS FTK
Sbjct: 651 DTAEWELIRMATDAHRHTNAQGSSWKQKRKFLSDDIGQSPMVPTSDGDKVDLEAFSEFTK 830
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
I+TPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLN EM
Sbjct: 831 IMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNSEM 1010
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIFDLG L FNLDDTEVAL+QAVLLMSSDR G C+E+IE+
Sbjct: 1011AVKREQLKNGGLGVVSDAIFDLGKELGQFNLDDTEVALMQAVLLMSSDRSGHQCMEKIEQ 1190
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1191CQEAYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKV 1340
>emb|X07752.1|MMCERBA3 Mouse c-erbA alpha3 mRNA for thyroid hormone receptor
Length = 1240
Score = 542 bits (1396), Expect = e-152
Identities = 260/337 (77%), Positives = 291/337 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 121 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 300
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 301 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 480
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 481 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 660
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 661 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 840
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 841 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1020
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 426
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +R +
Sbjct: 1021SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKGPQVRQL 1131
>emb|X07409.1|RNTRAVI Rat c-erb-A alpha mRNA for T3 receptor alpha
Length = 1910
Score = 541 bits (1393), Expect = e-152
Identities = 259/335 (77%), Positives = 291/335 (86%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 84 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 263
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 264 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 443
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 444 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 623
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 624 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 803
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 804 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 983
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 984 SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1088
Score = 35.8 bits (81), Expect = 8.6
Identities = 22/74 (29%), Positives = 38/74 (50%)
Frame = -1
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1367 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 1191
Query: 426 IGACHASRFLHMKV 439
+ H+ + L +V
Sbjct: 1190 LNNMHSEKLLSFRV 1149
>emb|AJ005798.1|SSAJ5798 Sus scrofa mRNA for thyroid hormone receptor alpha 2 (c-erbA-alpha
2)
Length = 2034
Score = 541 bits (1393), Expect = e-152
Identities = 259/335 (77%), Positives = 291/335 (86%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 257 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 436
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 437 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 616
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 617 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 796
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 797 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 976
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 977 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1156
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1157SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1261
Score = 35.8 bits (81), Expect = 8.6
Identities = 22/74 (29%), Positives = 38/74 (50%)
Frame = -3
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1540 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 1364
Query: 426 IGACHASRFLHMKV 439
+ H+ + L +V
Sbjct: 1363 LNNMHSEKLLSFRV 1322
>emb|X07751.1|MMCERBA2 Mouse c-erbA alpha2 mRNA for thyroid hormone receptor
Length = 1357
Score = 541 bits (1393), Expect = e-152
Identities = 259/335 (77%), Positives = 291/335 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 121 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 300
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 301 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 480
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 481 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 660
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 661 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 840
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 841 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1020
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1021SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1125
>gb|M24899.1|HUMEAR7A Human triiodothyronine (ear7) mRNA, complete cds
Length = 2309
Score = 540 bits (1392), Expect = e-152
Identities = 259/335 (77%), Positives = 291/335 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 532 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 711
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 712 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 891
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 892 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1071
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 1072IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1251
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1252AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1431
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1432SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1536
>gb|J03239.1|HUMTHRA2A Human c-erbA-alpha-2 gene encoding thyroid hormone receptor type
alpha-2 mRNA, complete cds, clone hTR-alpha-2
Length = 2015
Score = 540 bits (1392), Expect = e-152
Identities = 259/335 (77%), Positives = 291/335 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 178 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 357
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 358 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 537
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 538 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 717
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 718 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 897
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 898 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1077
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1078SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1182
>gb|BC000261.1|BC000261 Homo sapiens, thyroid hormone receptor, alpha (avian erythroblastic
leukemia viral (v-erb-a) oncogene homolog), clone
MGC:2353 IMAGE:3501886, mRNA, complete cds
Length = 2415
Score = 540 bits (1392), Expect = e-152
Identities = 259/335 (77%), Positives = 291/335 (86%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 545 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 724
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 725 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 904
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 905 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1084
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 1085IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1264
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1265AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1444
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1445SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1549
>ref|XM_083987.1| Homo sapiens thyroid hormone receptor, alpha (erythroblastic
leukemia viral (v-erb-a) oncogene homolog, avian)
(THRA), mRNA
Length = 2115
Score = 540 bits (1392), Expect = e-152
Identities = 259/335 (77%), Positives = 291/335 (86%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 456 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 635
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 636 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 815
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 816 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 995
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 996 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1175
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1176AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1355
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1356SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1460
>ref|XM_008585.3| Homo sapiens thyroid hormone receptor, alpha (avian erythroblastic
leukemia viral (v-erb-a) oncogene homolog) (THRA), mRNA
Length = 2115
Score = 540 bits (1392), Expect = e-152
Identities = 259/335 (77%), Positives = 291/335 (86%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 456 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 635
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 636 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 815
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 816 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 995
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 996 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1175
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1176AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1355
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1356SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1460
>gb|BC002728.1|BC002728 Homo sapiens, thyroid hormone receptor, alpha (avian erythroblastic
leukemia viral (v-erb-a) oncogene homolog), clone
MGC:3645 IMAGE:3628335, mRNA, complete cds
Length = 2422
Score = 540 bits (1392), Expect = e-152
Identities = 259/335 (77%), Positives = 291/335 (86%)
Frame = +2
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 554 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 733
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 734 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 913
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 914 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1093
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 1094IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1273
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1274AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1453
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1454SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1558
>ref|NM_003250.1| Homo sapiens thyroid hormone receptor, alpha (erythroblastic
leukemia viral (v-erb-a) oncogene homolog, avian)
(THRA), mRNA
Length = 2112
Score = 538 bits (1386), Expect = e-151
Identities = 258/335 (77%), Positives = 290/335 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 454 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 633
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI V MA DLVLDDSKR+A + +S+ +PEP
Sbjct: 634 KITRNQCQLCRFKKCIAVAMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 813
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 814 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 993
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 994 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1173
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1174AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1353
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1354SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1458
>emb|Y00479.1|HSERBT1 H.sapiens mRNA for thyroid hormone receptor
Length = 2112
Score = 538 bits (1386), Expect = e-151
Identities = 258/335 (77%), Positives = 290/335 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 454 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 633
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI V MA DLVLDDSKR+A + +S+ +PEP
Sbjct: 634 KITRNQCQLCRFKKCIAVAMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 813
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 814 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 993
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 994 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1173
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1174AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1353
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1354SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1458
>ref|NM_031134.1| Rattus norvegicus thyroid hormone receptor alpha (Thra1), mRNA
Length = 2460
Score = 537 bits (1384), Expect = e-151
Identities = 258/335 (77%), Positives = 290/335 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCE CKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 637 GYIPSYLDKDEQCVVCGDKATGYHYRCITCECCKGFFRRTIQKNLHPTYSCKYDSCCVID 816
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 817 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 996
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 997 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1176
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 1177IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1356
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1357AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1536
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1537SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1641
Score = 35.8 bits (81), Expect = 8.6
Identities = 22/74 (29%), Positives = 38/74 (50%)
Frame = -1
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1920 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 1744
Query: 426 IGACHASRFLHMKV 439
+ H+ + L +V
Sbjct: 1743 LNNMHSEKLLSFRV 1702
>gb|M31174.1|RATERBAA Rat c-erbA-alpha-2-related protein mRNA, complete cds
Length = 2460
Score = 537 bits (1384), Expect = e-151
Identities = 258/335 (77%), Positives = 290/335 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDE CVVCGDKATGYHYRCITCE CKGFFRRTIQKNLHP+YSCKY+ CVID
Sbjct: 637 GYIPSYLDKDEQCVVCGDKATGYHYRCITCECCKGFFRRTIQKNLHPTYSCKYDSCCVID 816
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 817 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 996
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 269
T EEW+LI TEAH +TNAQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 997 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1176
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEM
Sbjct: 1177IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1356
Query: 330 AVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1357AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1536
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1537SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1641
Score = 35.8 bits (81), Expect = 8.6
Identities = 22/74 (29%), Positives = 38/74 (50%)
Frame = -1
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1920 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 1744
Query: 426 IGACHASRFLHMKV 439
+ H+ + L +V
Sbjct: 1743 LNNMHSEKLLSFRV 1702
>gb|AF302254.1|AF302254 Scophthalmus maximus thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 987
Score = 528 bits (1360), Expect = e-148
Identities = 262/328 (79%), Positives = 283/328 (85%), Gaps = 9/328 (2%)
Frame = +1
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRRTIQKNL+P+Y+CKYEGKCVIDKVTRNQC+ECRFKKCI VGMATDLVLDDSKR
Sbjct: 1 GCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCRECRFKKCIVVGMATDLVLDDSKR 180
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 240
LA LQK++ + EPT EEW+LI+ VTEAH+ATNAQG+HWKQK KF
Sbjct: 181 LAKRKLIEENRERRRKEELQKTVWDRLEPTQEEWDLIRMVTEAHMATNAQGNHWKQKRKF 360
Query: 241 LP---------EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 291
L EDIGQA + N PEG KVD+EAFS FTKIITPAITRVVDFAKKLPMFCEL
Sbjct: 361 LSAAGVKEDKAEDIGQASMANTPEGNKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCEL 540
Query: 292 PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDL 351
PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV R QLKNGGLGVVSDAIFDL
Sbjct: 541 PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRDQLKNGGLGVVSDAIFDL 720
Query: 352 GMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 411
G+SLS+FNLDD+EVALLQAV+L+SSDRPGL+ VERIE+ Q+ FLLAFEHYINYRKH V H
Sbjct: 721 GVSLSAFNLDDSEVALLQAVILLSSDRPGLSSVERIERCQEEFLLAFEHYINYRKHKVAH 900
Query: 412 FWPKLLMKVTDLRMIGACHASRFLHMKV 439
FWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 901 FWPKLLMKVTDLRMIGACHASRFLHMKV 984
>gb|AF302243.1|AF302243 Takifugu rubripes thyroid hormone receptor alpha (TR-alpha) mRNA,
partial cds
Length = 963
Score = 499 bits (1286), Expect = e-139
Identities = 245/321 (76%), Positives = 271/321 (84%)
Frame = +1
Query: 118 TCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDD 177
TCEGCKGFFRRTIQKNLHP+YSCKYEG C+IDK+TRNQCQ CRFKKC VGMA DLVLDD
Sbjct: 1 TCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCTSVGMAMDLVLDD 180
Query: 178 SKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQK 237
SKR+A + + + +PEP EWELI+ VTEAH TNA+GS WKQK
Sbjct: 181 SKRVAKRRLIEENRQKRKKEEMVRMLQARPEPDTAEWELIRMVTEAHRHTNAEGSTWKQK 360
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
KFL +DIGQ P+V + +G KVDLEAFS FTKI+TPAITRVVDFAKKLPMF ELPCEDQI
Sbjct: 361 RKFLSDDIGQGPVVPSSDGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQI 540
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
ILLKGCCMEIMSLRAAVRYDPESETLTL+G++AV R QLKNGGLGVVSDAIFDLG SL+
Sbjct: 541 ILLKGCCMEIMSLRAAVRYDPESETLTLSGKIAVKREQLKNGGLGVVSDAIFDLGKSLAQ 720
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
FNLDDTEVAL+QAVLLMSSDR GL VE+IE+ Q+++LLAFEHYINYRKH + HFWPKLL
Sbjct: 721 FNLDDTEVALMQAVLLMSSDRSGLTSVEKIEQCQEAYLLAFEHYINYRKHQIPHFWPKLL 900
Query: 418 MKVTDLRMIGACHASRFLHMK 438
MKVTDLRMIGACHASRFLHMK
Sbjct: 901 MKVTDLRMIGACHASRFLHMK 963
>gb|AF302253.1|AF302253 Scophthalmus maximus thyroid hormone receptor alpha (TR-alpha)
mRNA, partial cds
Length = 920
Score = 474 bits (1220), Expect = e-132
Identities = 235/306 (76%), Positives = 258/306 (83%)
Frame = +1
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRRTIQKNLHP+YSCKYEG C+IDK+TRNQCQ CRFKKCI VGMA DLVL DSKR
Sbjct: 1 GCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLGDSKR 180
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKF 240
+A + +++ +PEP EEW+LIK VTEAH TNAQGS WKQK KF
Sbjct: 181 VAKRRLIEENREKRKREEMVRTLQIRPEPNTEEWDLIKLVTEAHRHTNAQGSSWKQKRKF 360
Query: 241 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 300
L +DIGQ P+V +G KVDLEAFS FTKI+TPAITRVVDFAKKLPMF ELPCEDQIILL
Sbjct: 361 LSDDIGQGPMVPTSDGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILL 540
Query: 301 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 360
KGCCMEIMSLRAAVRYDPESETLTLNGEMAV R QLKNGGLGVVSDAIFDLG SL+ FNL
Sbjct: 541 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNL 720
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DDTEVAL+QAVLLMSSDR GL VE+IE+ Q+++LLAFEHYINYRKH++ HFWPKLLMKV
Sbjct: 721 DDTEVALMQAVLLMSSDRSGLTSVEKIEQCQEAYLLAFEHYINYRKHNIPHFWPKLLMKV 900
Query: 421 TDLRMI 426
TDLRMI
Sbjct: 901 TDLRMI 918
>gb|AF302241.1|AF302241 Anguilla anguilla thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 890
Score = 466 bits (1198), Expect = e-129
Identities = 237/296 (80%), Positives = 250/296 (84%), Gaps = 10/296 (3%)
Frame = +1
Query: 137 SYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXX 196
SY+CKYEGKC IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA
Sbjct: 1 SYACKYEGKCAIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRRLIEENRQRRQR 180
Query: 197 XX-LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFL---------PEDIG 246
LQ++ KPEPT +EWELI+ VTEAHVATNAQG+HWKQK KFL EDIG
Sbjct: 181 REELQRTAWRKPEPTPDEWELIRAVTEAHVATNAQGNHWKQKRKFLRAVEVKESKAEDIG 360
Query: 247 QAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME 306
QAP VNAP+G KVDLEAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME
Sbjct: 361 QAPFVNAPDGNKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME 540
Query: 307 IMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVA 366
IMSLRAAVRYDPESETLTLNGEMAV RGQLKNGGLGVVSDAIFDLG+SLS FNLDD+EVA
Sbjct: 541 IMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSCFNLDDSEVA 720
Query: 367 LLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTD 422
LLQAV+LMSSDRPGL VERIE+ Q+ FLLAFEHYINYRKH V +FWPKLLMKVTD
Sbjct: 721 LLQAVILMSSDRPGLTSVERIEQCQEDFLLAFEHYINYRKHKVPYFWPKLLMKVTD 888
>gb|AF302244.1|AF302244 Takifugu rubripes thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 895
Score = 464 bits (1195), Expect = e-129
Identities = 231/298 (77%), Positives = 253/298 (84%), Gaps = 9/298 (3%)
Frame = +1
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 187
RTIQKNL+P+Y+CKYEGKCVIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA
Sbjct: 1 RTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLI 180
Query: 188 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFL------ 241
LQ+++ + EPT EEW+LI+ VTEAH+ATNAQG+HWKQK KFL
Sbjct: 181 EENRERRRREELQRTVWDRIEPTQEEWDLIRMVTEAHMATNAQGNHWKQKRKFLSAEGLK 360
Query: 242 ---PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQII 298
PED GQA +VN P G KVDLEAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQII
Sbjct: 361 ETKPEDNGQASMVNTPNGNKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQII 540
Query: 299 LLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSF 358
LLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV RGQLKNGGLGVVSDAIFDLG+SLS+F
Sbjct: 541 LLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSAF 720
Query: 359 NLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 416
NLDD+EVALLQA++L+SSDR GL+ VE+IE+YQ+ FLLAFEHYINYRKH V HFWP L
Sbjct: 721 NLDDSEVALLQAIILLSSDRSGLSNVEQIERYQEEFLLAFEHYINYRKHKVPHFWPNL 894
>gb|AF302247.1|AF302247 Oreochromis niloticus thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 887
Score = 464 bits (1194), Expect = e-129
Identities = 234/295 (79%), Positives = 249/295 (84%), Gaps = 9/295 (3%)
Frame = +1
Query: 137 SYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXX 196
+Y+CKYEGKCVIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA
Sbjct: 1 TYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRR 180
Query: 197 XXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFL---------PEDIGQ 247
LQK+ + EPT EW+LI+ VTEAH+ATNAQG+HWKQK KFL PEDIGQ
Sbjct: 181 EELQKTAWDRLEPTQXEWDLIRMVTEAHMATNAQGNHWKQKRKFLSAAGVKEAKPEDIGQ 360
Query: 248 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 307
A NAPEG KVD+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI
Sbjct: 361 ASTGNAPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 540
Query: 308 MSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 367
MSLRAAVRYDPESETLTLNGEMAV RGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVAL
Sbjct: 541 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVAL 720
Query: 368 LQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTD 422
LQAV+L+SSDRPGL VERIE+ Q+ FLLAFEHYINYRKH V HFWPKLLMKVTD
Sbjct: 721 LQAVILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKHKVAHFWPKLLMKVTD 885
>gb|AF302242.1|AF302242 Danio rerio thyroid hormone receptor beta (TR-beta) mRNA, partial
cds
Length = 834
Score = 446 bits (1146), Expect = e-123
Identities = 223/277 (80%), Positives = 238/277 (85%), Gaps = 9/277 (3%)
Frame = +1
Query: 140 CKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXL 199
CKYEGKCVIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA L
Sbjct: 1 CKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREEL 180
Query: 200 QKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFL---------PEDIGQAPI 250
QK++ +PEPT EEWE+I+ VTEAH+ATNAQG+HWKQK KFL PEDIG API
Sbjct: 181 QKTVWDRPEPTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLSAVGVKEAKPEDIGSAPI 360
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
VNAPEG KVD+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL
Sbjct: 361 VNAPEGNKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 540
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
RAAVRYDPES+TLTLNGEMAV RGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQA
Sbjct: 541 RAAVRYDPESDTLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQA 720
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKH 407
V+L+SSDRPGL VERIE+ Q+ FLLAFEHYINYRKH
Sbjct: 721 VILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKH 831
>gb|AF302248.1|AF302248 Oreochromis niloticus thyroid hormone receptor alpha large isoform
(TR-alpha1) mRNA, partial cds
Length = 869
Score = 439 bits (1128), Expect = e-121
Identities = 216/289 (74%), Positives = 239/289 (81%)
Frame = +1
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 187
RTIQKNLHP+YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 188 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQ 247
+ KS+ +PEPT EWELI+ VTEAH TNAQGS WKQK KFLPE IGQ
Sbjct: 181 EENRERRKKEEMVKSLQSRPEPTGAEWELIRLVTEAHRHTNAQGSQWKQKRKFLPEKIGQ 360
Query: 248 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 307
+P+ +G KVDLEAFS FTKIITPAIT DFAKKLPMF ELPCEDQIILLKGCCMEI
Sbjct: 361 SPVAPTSDGDKVDLEAFSEFTKIITPAITVFFDFAKKLPMFSELPCEDQIILLKGCCMEI 540
Query: 308 MSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 367
MSLRAA+RYDP+SETLTL+GEMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVAL
Sbjct: 541 MSLRAAMRYDPDSETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVAL 720
Query: 368 LQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 416
LQAVLLMSSDR GL C ++IEK Q+++LLAFEHYINYRKH++ HFWPKL
Sbjct: 721 LQAVLLMSSDRSGLTCTDKIEKCQETYLLAFEHYINYRKHNIPHFWPKL 867
>gb|AF302240.1|AF302240 Anguilla anguilla thyroid hormone receptor alpha (TR-alpha) mRNA,
partial cds
Length = 809
Score = 398 bits (1022), Expect = e-109
Identities = 201/269 (74%), Positives = 221/269 (81%)
Frame = +1
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 187
RTIQKNLHPSYSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDD+KR+A
Sbjct: 1 RTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDNKRVAKRRLI 180
Query: 188 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQ 247
+ K++ ++PEP EWELI+ VTEAH TNAQ SHWKQK KFLPEDIGQ
Sbjct: 181 EENRERRKKEEMVKTLQNRPEPCSSEWELIRLVTEAHRHTNAQCSHWKQKRKFLPEDIGQ 360
Query: 248 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 307
P+ +G KVDLEAF FTKIITPAIT VVDFAKKLPMF ELPCEDQIILLKGCCMEI
Sbjct: 361 FPVAPNSDGDKVDLEAFREFTKIITPAITGVVDFAKKLPMFSELPCEDQIILLKGCCMEI 540
Query: 308 MSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 367
MSLRAAVRYDPESETLTL+GEMAV R QLKNGGL VVSDAIFDLG SL+ FNLDD+EVAL
Sbjct: 541 MSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLRVVSDAIFDLGKSLAQFNLDDSEVAL 720
Query: 368 LQAVLLMSSDRPGLACVERIEKYQDSFLL 396
LQAVLLMSSDR GL CVE+IEK Q+++LL
Sbjct: 721 LQAVLLMSSDRSGLTCVEKIEKCQETYLL 807
>gb|M31177.1|RATERBAA2 Rat c-erbA-alpha-2 protein mRNA, complete cds
Length = 1587
Score = 381 bits (979), Expect = e-104
Identities = 188/256 (73%), Positives = 217/256 (84%)
Frame = +1
Query: 169 MATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATN 228
MA DLVLDDSKR+A + +S+ +PEPT EEW+LI TEAH +TN
Sbjct: 1 MAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTN 180
Query: 229 AQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMF 288
AQGSHWKQ+ KFLP+DIGQ+PIV+ P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF
Sbjct: 181 AQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMF 360
Query: 289 CELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAI 348
ELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEMAV R QLKNGGLGVVSDAI
Sbjct: 361 SELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAI 540
Query: 349 FDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHH 408
F+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK Q+++LLAFEHY+N+RKH+
Sbjct: 541 FELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHN 720
Query: 409 VTHFWPKLLMKVTDLR 424
+ HFWPKLLMK +++
Sbjct: 721 IPHFWPKLLMKEREVQ 768
Score = 35.8 bits (81), Expect = 8.6
Identities = 22/74 (29%), Positives = 38/74 (50%)
Frame = -1
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1047 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 871
Query: 426 IGACHASRFLHMKV 439
+ H+ + L +V
Sbjct: 870 LNNMHSEKLLSFRV 829
>emb|AJ238614.1|SSC238614 Sus scrofa mRNA for thyroid hormone receptor beta 1 encoded by
c-erbA-b1 gene, partial
Length = 611
Score = 373 bits (958), Expect = e-101
Identities = 173/203 (85%), Positives = 179/203 (87%)
Frame = +2
Query: 8 AWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTSSIFHLDH 67
AWDKPKHCPD E DWKLVGMS+ACL RK++ ERRSTLKNEQSSPHLIQ TWTSSI HLDH
Sbjct: 2 AWDKPKHCPDGEQDWKLVGMSDACLQRKTYPERRSTLKNEQSSPHLIQATWTSSILHLDH 181
Query: 68 DDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFR 127
DDVNDQSV AQTFQTEEKKCKGYIPSYLD+DELCVVCGDKATGYHYRCITCEGCKGFFR
Sbjct: 182 DDVNDQSVPGAQTFQTEEKKCKGYIPSYLDEDELCVVCGDKATGYHYRCITCEGCKGFFR 361
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 187
RTIQKNLHPSY+CKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA
Sbjct: 362 RTIQKNLHPSYACKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLI 541
Query: 188 XXXXXXXXXXXLQKSIGHKPEPT 210
LQ+SIGHKPEPT
Sbjct: 542 EENREKRRREELQRSIGHKPEPT 610
>gb|AF322218.1|AF322218 Danio rerio thyroid hormone receptor beta 2-like mRNA, complete
sequence
Length = 1234
Score = 367 bits (941), Expect = 2e-99
Identities = 186/225 (82%), Positives = 198/225 (87%)
Frame = +2
Query: 215 ELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPA 274
+L +T + + NA W Q P EDIG APIVNAPEG KVD+EAFS FTKIITPA
Sbjct: 518 KLPETSAKNVASRNASLLAWLQTP----EDIGSAPIVNAPEGNKVDIEAFSQFTKIITPA 685
Query: 275 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRG 334
ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTLNGEMAV RG
Sbjct: 686 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLNGEMAVTRG 865
Query: 335 QLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSF 394
QLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQAV+L+SSDRPGL VERIE+ Q+ F
Sbjct: 866 QLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSDRPGLTSVERIERCQEEF 1045
Query: 395 LLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
LLAFEHYINYRKH V HFWPKLLMKVTDLRMIGACHASRFLHMKV
Sbjct: 1046LLAFEHYINYRKHKVAHFWPKLLMKVTDLRMIGACHASRFLHMKV 1180
Score = 182 bits (461), Expect = 7e-44
Identities = 80/84 (95%), Positives = 83/84 (98%)
Frame = +1
Query: 89 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI 148
KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+P+Y+CKYEGKCVI
Sbjct: 334 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVI 513
Query: 149 DKVTRNQCQECRFKKCIYVGMATD 172
DKVTRNQCQECRFKKCI VGMATD
Sbjct: 514 DKVTRNQCQECRFKKCIAVGMATD 585
>gb|AF302246.1|AF302246 Oncorhynchus mykiss thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 687
Score = 362 bits (929), Expect = 4e-98
Identities = 176/229 (76%), Positives = 192/229 (82%), Gaps = 9/229 (3%)
Frame = +1
Query: 119 CEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS 178
CEGCKGFFRRTIQKNL+P+Y+CKYE KC+IDKVTRNQCQECRFKKCI VGMATDLVLDDS
Sbjct: 1 CEGCKGFFRRTIQKNLNPTYACKYEAKCIIDKVTRNQCQECRFKKCITVGMATDLVLDDS 180
Query: 179 KRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKP 238
KRLA QK++ +PE + EEW+LI+ VTEAH++TNAQG+HWKQK
Sbjct: 181 KRLAKRKLIEESRERRRKEEFQKTVWDRPELSQEEWDLIRMVTEAHMSTNAQGNHWKQKR 360
Query: 239 KFL---------PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFC 289
KFL PEDIGQAP++NAPEG KVD+EAFS FTKIITPAITRVVDFAKKLPMFC
Sbjct: 361 KFLSAVGVKETKPEDIGQAPVINAPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFC 540
Query: 290 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKN 338
ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV RGQLKN
Sbjct: 541 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKN 687
>gb|AF302245.1|AF302245 Oncorhynchus mykiss thyroid hormone receptor alpha (TR-alpha) mRNA,
partial cds
Length = 683
Score = 350 bits (898), Expect = 2e-94
Identities = 173/227 (76%), Positives = 189/227 (83%)
Frame = +1
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 187
RTIQKNLHP+YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 188 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQ 247
+ K++ ++PEPT EWELI+ +TEAH TNAQGSHWKQK KFLPEDIGQ
Sbjct: 181 EENREKRKKEEMVKTLQNRPEPTGSEWELIRMLTEAHRHTNAQGSHWKQKRKFLPEDIGQ 360
Query: 248 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 307
+P+ +G KVDLEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEI
Sbjct: 361 SPVAPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEI 540
Query: 308 MSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMS 354
MSLRAAVRYDPESETLTL+GEMAV R QLKNGGLGVVSDAIFDLG S
Sbjct: 541 MSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKS 681
>gb|AF302249.1|AF302249 Oreochromis niloticus thyroid hormone receptor alpha small isoform
(TR-alpha2) mRNA, partial cds
Length = 722
Score = 348 bits (893), Expect = 6e-94
Identities = 181/289 (62%), Positives = 201/289 (68%)
Frame = +1
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 187
RTIQKNLHP+YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 188 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQ 247
+ KS+ +PEPT EWELI+ VTEAH TNAQGS WKQK KFL
Sbjct: 181 EENRERRKKEEMVKSLQSRPEPTGAEWELIRLVTEAHRHTNAQGSQWKQKRKFL------ 342
Query: 248 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 307
LPCEDQIILLKGCCMEI
Sbjct: 343 -------------------------------------------LPCEDQIILLKGCCMEI 393
Query: 308 MSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 367
MSLRAA+RYDP+SETLTL+GEMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVAL
Sbjct: 394 MSLRAAMRYDPDSETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVAL 573
Query: 368 LQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 416
LQAVLLMSSDR GL C ++IEK Q+++LLAFEHYINYRKH++ HFWPKL
Sbjct: 574 LQAVLLMSSDRSGLTCTDKIEKCQETYLLAFEHYINYRKHNIPHFWPKL 720
>gb|AF302250.1|AF302250 Salmo salar thyroid hormone receptor alpha (TR-alpha) mRNA, partial
cds
Length = 679
Score = 339 bits (869), Expect = 4e-91
Identities = 171/227 (75%), Positives = 187/227 (82%)
Frame = +1
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 187
RTIQKNLHP+YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 188 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQ 247
+ K++ ++PEPT EWELI+ +TEAH TNAQGSHWKQK KFLPEDIGQ
Sbjct: 181 EENRVKRKEEMV-KTLQNRPEPTGSEWELIRMLTEAHRHTNAQGSHWKQKRKFLPEDIGQ 357
Query: 248 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 307
+P+V +G KVDLEAFS FTKIITPAITRVVDFAKKLPMF LPCEDQIILLKGCCMEI
Sbjct: 358 SPVVPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSGLPCEDQIILLKGCCMEI 537
Query: 308 MSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMS 354
MSLRAAVRYD ESETLTL+GEMAV R QLKNG LGVVSDAIFDLG S
Sbjct: 538 MSLRAAVRYDAESETLTLSGEMAVKREQLKNGDLGVVSDAIFDLGKS 678
>gb|AY049025.1|AY049025S1 Rana pipiens thyroid hormone receptor beta mRNA, partial cds
Length = 538
Score = 315 bits (807), Expect = 6e-84
Identities = 150/175 (85%), Positives = 153/175 (86%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID
Sbjct: 13 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 192
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++ KPEP
Sbjct: 193 KVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKDELQKTLVQKPEP 372
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAF 264
T EEWELI+ VTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAF
Sbjct: 373 TPEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF 537
>gb|AF146777.1|AF146777 Salmo salar thyroid hormone receptor beta (TR-beta) mRNA, partial
cds
Length = 837
Score = 311 bits (798), Expect = 6e-83
Identities = 147/198 (74%), Positives = 163/198 (82%), Gaps = 9/198 (4%)
Frame = +1
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL+P+Y+CKYE KC+ID
Sbjct: 244 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCIID 423
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++ +PEP
Sbjct: 424 KVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRPEP 603
Query: 210 TDEEWELIKTVTEAHVATNAQGSHWKQKPKFL---------PEDIGQAPIVNAPEGGKVD 260
+ EEW+LI+ TEAH++TNAQG+HWKQK KFL PEDIGQAP++NAPEG KVD
Sbjct: 604 SQEEWDLIRMATEAHMSTNAQGNHWKQKRKFLSAVGVKETKPEDIGQAPVINAPEGSKVD 783
Query: 261 LEAFSHFTKIITPAITRV 278
+EAFS FTKIITPAITRV
Sbjct: 784 IEAFSQFTKIITPAITRV 837
>dbj|AB057767.1|AB057767 Ciona savignyi Cs-NR1 mRNA for nuclear receptor 1, complete cds
Length = 2128
Score = 281 bits (719), Expect = 9e-74
Identities = 150/366 (40%), Positives = 211/366 (56%), Gaps = 2/366 (0%)
Frame = +2
Query: 76 SSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLH 135
S+ + + K KGY+PSYLD +E+CVVCGDKATGYHYRCITCEGCKGFFRRT+QK LH
Sbjct: 107 SNGSGMRDKRKTMKGYVPSYLDGNEVCVVCGDKATGYHYRCITCEGCKGFFRRTVQKGLH 286
Query: 136 PSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXX 195
+Y CK + KC I+KV+RNQCQ CR+KKCI GMATDLVL++ KRLA
Sbjct: 287 QAYQCKQDEKCQINKVSRNQCQLCRYKKCITTGMATDLVLNEDKRLAKRRLIERNRQLRR 466
Query: 196 XXXLQKSIGHKPEPTDEEWELIK-TVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAP 254
K +GH E W+ K + E HV + +H+ D+G +
Sbjct: 467 ----HKDLGH----VIETWKSNKLSEEEKHVINSVVQAHY---------DLGSYCDITGV 595
Query: 255 EGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFC-ELPCEDQIILLKGCCMEIMSLRAA 313
HF+ +T A+TRVV+FAK LP F ++ +DQ+ +LKGCCME++ L A
Sbjct: 596 STSTASHN--EHFSSALTNAVTRVVEFAKCLPFFSDQVSTDDQVTMLKGCCMEVIVLNAV 769
Query: 314 VRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLL 373
YD + TL L + V R QL+ +D +F ++ L TE+++++A+++
Sbjct: 770 TDYDRQRGTLKLFSSVVVSRNQLRRTRFDNFADDLFRTAEEMAILQLTQTEISMMKAIIV 949
Query: 374 MSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASR 433
+ DRPG+ RI+ Q+ L A HY+N ++ H W LL+K+ D+R I A+
Sbjct: 950 FAPDRPGVQQTGRIKNIQNFLLQALNHYLNDKRKHEYTVWSMLLLKLADVRRISTGFAAS 1129
Query: 434 FLHMKV 439
+HMK+
Sbjct: 1130LMHMKL 1147
>emb|Y16623.1|NMY16623 Necturus maculosus mRNA for thyroid hormone receptor receptor
alpha, partial
Length = 557
Score = 276 bits (706), Expect = 3e-72
Identities = 136/184 (73%), Positives = 150/184 (80%)
Frame = +1
Query: 147 VIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHK 206
+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ ++
Sbjct: 4 IIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMLKSMQNR 183
Query: 207 PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSH 266
PEPT EEWELI+ VT+AH +TNAQGSHWKQK KFLP+ IGQ P+ PE +VDLEAFS
Sbjct: 184 PEPTSEEWELIRLVTDAHCSTNAQGSHWKQKRKFLPDAIGQCPMTAVPENDRVDLEAFSE 363
Query: 267 FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLN 326
FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+
Sbjct: 364 FTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLS 543
Query: 327 GEMA 330
GEMA
Sbjct: 544 GEMA 555
>gb|AF077403.1|AF077403 Ciona intestinalis nuclear receptor 1 (NR1) mRNA, complete cds
Length = 2086
Score = 258 bits (660), Expect = 6e-67
Identities = 138/359 (38%), Positives = 203/359 (56%), Gaps = 3/359 (0%)
Frame = +2
Query: 84 EEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYE 143
+ K KGYIPSYLD +E CVVCGDKATGYHYRCITCEGCKGFFRRT+QK+L +Y CK
Sbjct: 173 KRKNMKGYIPSYLDGNEECVVCGDKATGYHYRCITCEGCKGFFRRTVQKDLQKTYQCKQR 352
Query: 144 GKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSI 203
GKC ++KV+RNQCQ CR++KCI GMATDLVL++ KR+A + +
Sbjct: 353 GKCQVNKVSRNQCQMCRYEKCIATGMATDLVLNEDKRIAKRKLIERNRQLRRHKDISHVM 532
Query: 204 G--HKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDL 261
G +D++ +I V +AH + D +P G+
Sbjct: 533 GTWKVGRGSDDDNHVISAVVQAH--------------NDVINDDDFEETSRSPTHGE--- 661
Query: 262 EAFSHFTKIITPAITRVVDFAKKLPMFC-ELPCEDQIILLKGCCMEIMSLRAAVRYDPES 320
F+ +T A+TRVV+FAK+LP F + +DQ+ +LKGCCME++ L YD
Sbjct: 662 ----QFSSALTNAVTRVVEFAKRLPFFTGKASTDDQVAMLKGCCMEVIVLNCVASYDRAR 829
Query: 321 ETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
TL L ++ + R +L+ +D +F +S L +TE+A+L+A+++ ++DRP
Sbjct: 830 CTLKLFSKVIITREKLRRTRFDHFADDLFRTAEEMSILQLTETEIAMLKAIIVFAADRPR 1009
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ ++ I Q+S L + +Y+ + H W LL+K+ D+R I A+ + MK+
Sbjct: 1010IQHIDEIRNIQNSLLQSLRYYVMDKAQHEYAVWSMLLIKMADIRRISNGFAASLMDMKL 1186
>emb|AJ012378.1|FRU012378 Fugu rubripes mRNA for retinoic acid receptor alpha-1
Length = 2134
Score = 221 bits (563), Expect = 1e-55
Identities = 129/377 (34%), Positives = 199/377 (52%), Gaps = 7/377 (1%)
Frame = +2
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKD------ELCVVCGDKATGYHYRCITCEGCK 123
++ S S T +T+ + +PS + C VC DK++GYHY CEGCK
Sbjct: 911 ISGYSTPSPATIETQSTSSEEIVPSPPSPPPPPRVYKPCFVCQDKSSGYHYGVSACEGCK 1090
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR +KC+ VGM+ + V +D +
Sbjct: 1091 GFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDRNK--- 1255
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPE 243
+K KPE + ++ TE + + +H + P
Sbjct: 1256 ----------------KKKDEKKPECIENY--VLSPDTEQMI-NRVRKAHQETFPSLC-- 1372
Query: 244 DIGQAPIVNAPEGG-KVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 302
+G+ N+ E +D++ + F+++ T I + V+FAK+LP F L DQI LLK
Sbjct: 1373 QLGKYTTTNSSERRVALDVDLWDKFSELSTKCIIKTVEFAKQLPGFVTLTIADQITLLKA 1552
Query: 303 CCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDD 362
C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L +DD
Sbjct: 1553 ACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDD 1732
Query: 363 TEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTD 422
E LL A+ L+ DR L E+++ Q+ L A + Y+ R+ H H +PK+LMK+TD
Sbjct: 1733 AETGLLSAICLLCGDRQDLEQAEKVDILQEPLLEALKIYVRRRRPHKPHMFPKMLMKITD 1912
Query: 423 LRMIGACHASRFLHMKV 439
LR I A A R + +K+
Sbjct: 1913 LRSISAKGAERVITLKM 1963
>ref|NM_000964.1| Homo sapiens retinoic acid receptor, alpha (RARA), mRNA
Length = 2907
Score = 220 bits (560), Expect = 2e-55
Identities = 133/382 (34%), Positives = 197/382 (50%), Gaps = 12/382 (3%)
Frame = +1
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 250 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 429
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 430 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--- 594
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 595 ----------------KKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QL 717
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 718 GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 876
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 877 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 1056
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L +R++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 1057LEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1236
Query: 418 MKVTDLRMIGACHASRFLHMKV 439
MK+TDLR I A A R + +K+
Sbjct: 1237MKITDLRSISAKGAERVITLKM 1302
>emb|X06614.1|HSRRA Human mRNA for receptor of retinoic acid
Length = 2907
Score = 220 bits (560), Expect = 2e-55
Identities = 133/382 (34%), Positives = 197/382 (50%), Gaps = 12/382 (3%)
Frame = +1
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 250 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 429
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 430 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--- 594
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 595 ----------------KKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QL 717
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 718 GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 876
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 877 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 1056
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L +R++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 1057LEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1236
Query: 418 MKVTDLRMIGACHASRFLHMKV 439
MK+TDLR I A A R + +K+
Sbjct: 1237MKITDLRSISAKGAERVITLKM 1302
>emb|X06538.1|HSRAR Human mRNA for retinoic acid receptor
Length = 1920
Score = 220 bits (560), Expect = 2e-55
Identities = 133/382 (34%), Positives = 197/382 (50%), Gaps = 12/382 (3%)
Frame = +2
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 374 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 553
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 554 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--- 718
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 719 ----------------KKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QL 841
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 842 GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 1000
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1001TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 1180
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L +R++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 1181LEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1360
Query: 418 MKVTDLRMIGACHASRFLHMKV 439
MK+TDLR I A A R + +K+
Sbjct: 1361MKITDLRSISAKGAERVITLKM 1426
>emb|Y10094.1|MSRARA M.spretus mRNA for retinoic acid receptor-alpha
Length = 1474
Score = 220 bits (560), Expect = 2e-55
Identities = 132/382 (34%), Positives = 197/382 (51%), Gaps = 12/382 (3%)
Frame = +2
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 155 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 334
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 335 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--- 499
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 500 ----------------KKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QL 622
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 623 GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 781
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 782 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 961
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L ++++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 962 LEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1141
Query: 418 MKVTDLRMIGACHASRFLHMKV 439
MK+TDLR I A A R + +K+
Sbjct: 1142MKITDLRSISAKGAERVITLKM 1207
>gb|BC008727.1|BC008727 Homo sapiens, retinoic acid receptor, alpha, clone MGC:1651
IMAGE:3163891, mRNA, complete cds
Length = 2441
Score = 220 bits (560), Expect = 2e-55
Identities = 133/382 (34%), Positives = 197/382 (50%), Gaps = 12/382 (3%)
Frame = +3
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 612 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 791
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 792 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--- 956
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 957 ----------------KKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QL 1079
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 1080GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 1238
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1239TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 1418
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L +R++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 1419LEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1598
Query: 418 MKVTDLRMIGACHASRFLHMKV 439
MK+TDLR I A A R + +K+
Sbjct: 1599MKITDLRSISAKGAERVITLKM 1664
>gb|AF242867.1|AF242867 Synthetic construct ECFP-retinoic acid receptor alpha fusion protein
mRNA, complete cds
Length = 2085
Score = 220 bits (560), Expect = 2e-55
Identities = 133/382 (34%), Positives = 197/382 (50%), Gaps = 12/382 (3%)
Frame = +1
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 844 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 1023
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 1024 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--- 1188
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 1189 ----------------KKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QL 1311
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 1312 GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 1470
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1471 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 1650
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L +R++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 1651 LEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1830
Query: 418 MKVTDLRMIGACHASRFLHMKV 439
MK+TDLR I A A R + +K+
Sbjct: 1831 MKITDLRSISAKGAERVITLKM 1896
>emb|X59473.1|GGRARBETA G.gallus mRNA for retinoic acid receptor-beta, RAR-beta
Length = 1596
Score = 219 bits (559), Expect = 3e-55
Identities = 131/374 (35%), Positives = 198/374 (52%), Gaps = 8/374 (2%)
Frame = +3
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S S +T T ++ PS L + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 156 SAQSVETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVTACEGCKGFFRRSI 335
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 336 QKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK---------- 479
Query: 191 XXXXXXXXLQKSIGHKPEPTDEE----WELIKTVTEAHVATNAQGSHWKQKPKFLPEDIG 246
K EPT +E +E+ + + + + +H + P +G
Sbjct: 480 --------------KKKEPTKQESTENYEMTAELDD--LTEKIRKAHQETFPSLC--QLG 605
Query: 247 QAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCM 305
+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C+
Sbjct: 606 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 785
Query: 306 EIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEV 365
+I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE
Sbjct: 786 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 965
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR
Sbjct: 966 GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 1145
Query: 426 IGACHASRFLHMKV 439
I A A R + +K+
Sbjct: 1146ISAKGAERVITLKM 1187
>emb|AJ012379.2|FRU012379 Fugu rubripes mRNA for retinoic acid receptor alpha-2
Length = 2577
Score = 219 bits (559), Expect = 3e-55
Identities = 123/339 (36%), Positives = 186/339 (54%), Gaps = 1/339 (0%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 1468 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 1641
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC+ VGM+ + V +D + +K KPE + ++ T
Sbjct: 1642 QKCLEVGMSKESVRNDRNK-------------------KKKDEKKPECIENY--VLSPDT 1758
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGG-KVDLEAFSHFTKIITPAITRVVD 280
E + + +H + P +G+ N+ E +D++ + F+++ T I + V+
Sbjct: 1759 EQMI-NRVRKAHQETFPSLC--QLGKYTTTNSSERRVALDVDLWDKFSELSTKCIIKTVE 1929
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1930 FAKQLPGFVTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 2109
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DD E LL A+ L+ DR L E+++ Q+ L A +
Sbjct: 2110 FGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQAEKVDILQEPLLEALKI 2289
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y+ R+ H H +PK+LMK+TDLR I A A R + +K+
Sbjct: 2290 YVRRRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKM 2406
>emb|X73972.1|GGRARA1 G.gallus RAR-alpha1 mRNA for retinoic acid receptor
Length = 1552
Score = 219 bits (559), Expect = 3e-55
Identities = 132/387 (34%), Positives = 199/387 (51%), Gaps = 7/387 (1%)
Frame = +1
Query: 60 SSIFHLDHD-DVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGY 112
SS+ + H V+ S S T +T+ + +PS L C VC DK++GY
Sbjct: 172 SSLPGIQHQLPVSGYSTPSPATVETQSTSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGY 351
Query: 113 HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATD 172
HY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ +
Sbjct: 352 HYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKE 525
Query: 173 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 232
V +D + T E ELI+ V +AH T
Sbjct: 526 SVRNDRNKKKKDVPKTECSESYIV-------------TPEVEELIEKVRKAHQETFPALC 666
Query: 233 HWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELP 292
Q K+ + + + +D++ + F+++ T I + V+FAK+LP F L
Sbjct: 667 ---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLT 816
Query: 293 CEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLG 352
DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F
Sbjct: 817 IADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFA 996
Query: 353 MSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHF 412
L +DD E LL A+ L+ DR L ++++K Q+ L A + Y+ R+ + H
Sbjct: 997 NQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHM 1176
Query: 413 WPKLLMKVTDLRMIGACHASRFLHMKV 439
+PK+LMK+TDLR I A A R + +K+
Sbjct: 1177FPKMLMKITDLRSISAKGAERVITLKM 1257
>gb|S56656.1|S56656 retinoic acid nuclear receptor isoform alpha 1 [mice, embryonal
carcinoma cell line, PCC7-MZ1, mRNA, 2061 nt]
Length = 2061
Score = 219 bits (559), Expect = 3e-55
Identities = 132/382 (34%), Positives = 197/382 (51%), Gaps = 12/382 (3%)
Frame = +1
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 685 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 864
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 865 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFDVGMSKESVRNDRNK--- 1029
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 1030 ----------------KKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QL 1152
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 1153 GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 1311
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1312 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 1491
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L ++++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 1492 LEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1671
Query: 418 MKVTDLRMIGACHASRFLHMKV 439
MK+TDLR I A A R + +K+
Sbjct: 1672 MKITDLRSISAKGAERVITLKM 1737
>gb|S74155.1|S74155 zRAR alpha =retinoic acid receptor alpha [zebrafish, embryos, mRNA,
1773 nt]
Length = 1773
Score = 219 bits (558), Expect = 4e-55
Identities = 123/339 (36%), Positives = 186/339 (54%), Gaps = 1/339 (0%)
Frame = +3
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 432 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 605
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC+ VGM+ + V +D + +K KPE T+ + T
Sbjct: 606 QKCLEVGMSKESVRNDRNK-------------------KKKEEKKPECTENY--TLSPDT 722
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGG-KVDLEAFSHFTKIITPAITRVVD 280
E + + +H + P +G+ N+ E +D++ + F+++ T I + V+
Sbjct: 723 EQMI-DRVRKAHQETFPSLC--QLGKYTTSNSSERRVALDVDLWDKFSELSTKCIIKTVE 893
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 894 FAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1073
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L A +
Sbjct: 1074FGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLLEALKI 1253
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y+ R+ H H +PK+LMK+TDLR I A A R + +K+
Sbjct: 1254YVRNRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKM 1370
>emb|X57339.1|GDRARB1 G.domesticus RAR beta mRNA for retinoic acid receptor beta, isoform
4
Length = 1714
Score = 219 bits (558), Expect = 4e-55
Identities = 131/374 (35%), Positives = 198/374 (52%), Gaps = 8/374 (2%)
Frame = +2
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S S +T T ++ PS L + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 287 SAQSVETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 466
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 467 QKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK---------- 610
Query: 191 XXXXXXXXLQKSIGHKPEPTDEE----WELIKTVTEAHVATNAQGSHWKQKPKFLPEDIG 246
K EPT +E +E+ + + + + +H + P +G
Sbjct: 611 --------------KKKEPTKQESTENYEMTAELDD--LTEKIRKAHQETFPSLC--QLG 736
Query: 247 QAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCM 305
+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C+
Sbjct: 737 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 916
Query: 306 EIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEV 365
+I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE
Sbjct: 917 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 1096
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR
Sbjct: 1097GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 1276
Query: 426 IGACHASRFLHMKV 439
I A A R + +K+
Sbjct: 1277ISAKGAERVITLKM 1318
>emb|X57340.1|GDRARB Chicken RAR-beta mRNA for retinoic acid receptor beta
Length = 1695
Score = 219 bits (558), Expect = 4e-55
Identities = 131/374 (35%), Positives = 198/374 (52%), Gaps = 8/374 (2%)
Frame = +1
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S S +T T ++ PS L + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 268 SAQSVETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 447
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 448 QKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK---------- 591
Query: 191 XXXXXXXXLQKSIGHKPEPTDEE----WELIKTVTEAHVATNAQGSHWKQKPKFLPEDIG 246
K EPT +E +E+ + + + + +H + P +G
Sbjct: 592 --------------KKKEPTKQESTENYEMTAELDD--LTEKIRKAHQETFPSLC--QLG 717
Query: 247 QAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCM 305
+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C+
Sbjct: 718 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 897
Query: 306 EIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEV 365
+I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE
Sbjct: 898 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 1077
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR
Sbjct: 1078GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 1257
Query: 426 IGACHASRFLHMKV 439
I A A R + +K+
Sbjct: 1258ISAKGAERVITLKM 1299
>gb|AF110730.1|AF110730 Coturnix coturnix retinoic acid receptor beta-2 (RAR-beta-2) mRNA,
complete cds
Length = 1642
Score = 219 bits (558), Expect = 4e-55
Identities = 131/374 (35%), Positives = 198/374 (52%), Gaps = 8/374 (2%)
Frame = +3
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S S +T T ++ PS L + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 174 SAQSVETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 353
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 354 QKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK---------- 497
Query: 191 XXXXXXXXLQKSIGHKPEPTDEE----WELIKTVTEAHVATNAQGSHWKQKPKFLPEDIG 246
K EPT +E +E+ + + + + +H + P +G
Sbjct: 498 --------------KKKEPTKQESTENYEMTAELDD--LTEKIRKAHQETFPSLC--QLG 623
Query: 247 QAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCM 305
+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C+
Sbjct: 624 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 803
Query: 306 EIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEV 365
+I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE
Sbjct: 804 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 983
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR
Sbjct: 984 GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 1163
Query: 426 IGACHASRFLHMKV 439
I A A R + +K+
Sbjct: 1164ISAKGAERVITLKM 1205
>gb|AF110729.1|AF110729 Coturnix coturnix retinoic acid receptor beta-1 (RAR-beta-1) mRNA,
complete cds
Length = 2049
Score = 219 bits (557), Expect = 5e-55
Identities = 131/374 (35%), Positives = 199/374 (53%), Gaps = 8/374 (2%)
Frame = +2
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S +S +T T ++ PS L + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 581 SPASVETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 760
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 761 QKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK---------- 904
Query: 191 XXXXXXXXLQKSIGHKPEPTDEE----WELIKTVTEAHVATNAQGSHWKQKPKFLPEDIG 246
K EPT +E +E+ + + + + +H + P +G
Sbjct: 905 --------------KKKEPTKQESTENYEMTAELDD--LTEKIRKAHQETFPSLC--QLG 1030
Query: 247 QAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCM 305
+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C+
Sbjct: 1031KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 1210
Query: 306 EIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEV 365
+I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE
Sbjct: 1211DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 1390
Query: 366 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 425
LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR
Sbjct: 1391GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 1570
Query: 426 IGACHASRFLHMKV 439
I A A R + +K+
Sbjct: 1571ISAKGAERVITLKM 1612
>gb|M73779.1|HUMPMLRAR Human PML-RAR protein (PML-RAR) mRNA, complete cds
Length = 3036
Score = 219 bits (557), Expect = 5e-55
Identities = 140/416 (33%), Positives = 209/416 (49%), Gaps = 16/416 (3%)
Frame = +1
Query: 40 RRSTLKNEQSSPHLIQTTWTSSIFHLDHDDVNDQSVSSAQT----FQTEEKKCKGYIPSY 95
R++ + Q P +Q + F D V Q +SS T +T+ + +PS
Sbjct: 1123 RQALCRLRQEEPQSLQAAVRTDGF--DEFKVRLQDLSSCITQGKAIETQSSSSEEIVPSP 1296
Query: 96 LDKDEL------CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 149
L C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+
Sbjct: 1297 PSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIIN 1470
Query: 150 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
KVTRN+CQ CR +KC VGM+ + V +D + +K KPE
Sbjct: 1471 KVTRNRCQYCRLQKCFEVGMSKESVRNDRNK-------------------KKKEVPKPEC 1593
Query: 210 ------TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEA 263
T E ELI+ V +AH T Q K+ + + + +D++
Sbjct: 1594 SESYTLTPEVGELIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDL 1743
Query: 264 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 323
+ F+++ T I + V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+
Sbjct: 1744 WDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTM 1923
Query: 324 TLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLAC 383
T + + + R Q+ N G G ++D +F L +DD E LL A+ L+ DR L
Sbjct: 1924 TFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQ 2103
Query: 384 VERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+R++ Q+ L A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+
Sbjct: 2104 PDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 2271
>gb|S63196.1|S63196 retinoic acid receptor-beta [chickens, mRNA Partial, 1530 nt]
Length = 1530
Score = 219 bits (557), Expect = 5e-55
Identities = 131/369 (35%), Positives = 194/369 (52%), Gaps = 3/369 (0%)
Frame = +1
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S S +T T ++ PS L + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 79 SAQSVETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 258
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 259 QKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEPT---- 420
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
++ E T E +L + + +AH T Q K+
Sbjct: 421 ---------KQDSTENYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS------ 546
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 547 -SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILIL 723
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 724 RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSA 903
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR I A
Sbjct: 904 ICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKG 1083
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1084AERVITLKM 1110
>ref|NM_009024.1| Mus musculus retinoic acid receptor, alpha (Rara), mRNA
Length = 1759
Score = 218 bits (555), Expect = 9e-55
Identities = 131/371 (35%), Positives = 192/371 (51%), Gaps = 12/371 (3%)
Frame = +3
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 552 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 731
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D K+
Sbjct: 732 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFDVGMSKESVRNDRKK--- 896
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 897 ----------------KKKEAPKPECSESYSLTPEVGELIEKVRKAHQETFPALC---QL 1019
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 1020GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 1178
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +TLT + + + R Q+ N G G ++D +F L
Sbjct: 1179TLLKAACLDILILRICTRYTPEQDTLTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 1358
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L ++++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 1359LEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1538
Query: 418 MKVTDLRMIGA 428
MK+TDLR I A
Sbjct: 1539MKITDLRSISA 1571
>emb|X07282.1|HSRARE Human mRNA for retinoic acid receptor-epsilon protein
Length = 1758
Score = 218 bits (555), Expect = 9e-55
Identities = 129/369 (34%), Positives = 194/369 (51%), Gaps = 6/369 (1%)
Frame = +2
Query: 77 SAQTFQTEEKKCKGYIPSYLDK------DELCVVCGDKATGYHYRCITCEGCKGFFRRTI 130
+AQ+ +T+ + +PS + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 491 TAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 670
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 671 QKNM--IYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETS---- 832
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
++ E T E +L + + +AH T Q K+
Sbjct: 833 ---------KQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS------ 958
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 959 -SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILIL 1135
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 1136RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLQPLEMDDTETGLLSA 1315
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L +++K Q+ L A + YI R+ H +PK+LMK+TDLR I A
Sbjct: 1316ICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKG 1495
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1496AERVITLKM 1522
>gb|M60909.1|MUSRARAP Mouse retinoic acid receptor alpha' mRNA, complete cds
Length = 1759
Score = 218 bits (555), Expect = 9e-55
Identities = 131/371 (35%), Positives = 192/371 (51%), Gaps = 12/371 (3%)
Frame = +3
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 552 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 731
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D K+
Sbjct: 732 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFDVGMSKESVRNDRKK--- 896
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 897 ----------------KKKEAPKPECSESYSLTPEVGELIEKVRKAHQETFPALC---QL 1019
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 1020GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 1178
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +TLT + + + R Q+ N G G ++D +F L
Sbjct: 1179TLLKAACLDILILRICTRYTPEQDTLTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 1358
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L ++++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 1359LEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1538
Query: 418 MKVTDLRMIGA 428
MK+TDLR I A
Sbjct: 1539MKITDLRSISA 1571
>emb|X56674.1|GGRTABPB Chicken mRNA for retinoic acid binding protein beta isoform
Length = 1869
Score = 218 bits (555), Expect = 9e-55
Identities = 131/384 (34%), Positives = 200/384 (51%), Gaps = 11/384 (2%)
Frame = +2
Query: 67 HDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDK------DELCVVCGDKATGYHYRCITCE 120
H + S S T +T+ + +PS + C VC DK++GYHY CE
Sbjct: 434 HPPTSGCSTPSPATVETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACE 613
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 614 GCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 787
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEE----WELIKTVTEAHVATNAQGSHWKQ 236
K EPT +E +E+ + + + + +H +
Sbjct: 788 ------------------------KKKEPTKQESTENYEMTAELDD--LTEKIRKAHQET 889
Query: 237 KPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCED 295
P +G+ +A ++DL + F+++ T I ++V+FAK+LP F L D
Sbjct: 890 FPSLC--QLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIAD 1063
Query: 296 QIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSL 355
QI LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1064QITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQL 1243
Query: 356 SSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPK 415
+DDTE LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK
Sbjct: 1244LPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPK 1423
Query: 416 LLMKVTDLRMIGACHASRFLHMKV 439
+LMK+TDLR I A A R + +K+
Sbjct: 1424ILMKITDLRSISAKGAERVITLKM 1495
>emb|X57341.1|GDRARB2 G.domesticus RAR beta mRNA for retinoic acid receptor beta, isoform
1
Length = 2039
Score = 218 bits (555), Expect = 9e-55
Identities = 131/384 (34%), Positives = 200/384 (51%), Gaps = 11/384 (2%)
Frame = +3
Query: 67 HDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDK------DELCVVCGDKATGYHYRCITCE 120
H + S S T +T+ + +PS + C VC DK++GYHY CE
Sbjct: 582 HPPTSGCSTPSPATVETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACE 761
Query: 121 GCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 180
GCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 762 GCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 935
Query: 181 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEE----WELIKTVTEAHVATNAQGSHWKQ 236
K EPT +E +E+ + + + + +H +
Sbjct: 936 ------------------------KKKEPTKQESTENYEMTAELDD--LTEKIRKAHQET 1037
Query: 237 KPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCED 295
P +G+ +A ++DL + F+++ T I ++V+FAK+LP F L D
Sbjct: 1038FPSLC--QLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIAD 1211
Query: 296 QIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSL 355
QI LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1212QITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQL 1391
Query: 356 SSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPK 415
+DDTE LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK
Sbjct: 1392LPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPK 1571
Query: 416 LLMKVTDLRMIGACHASRFLHMKV 439
+LMK+TDLR I A A R + +K+
Sbjct: 1572ILMKITDLRSISAKGAERVITLKM 1643
>emb|Y00291.1|HSHAPRA Human hap mRNA encoding a DNA-binding hormone receptor
Length = 2972
Score = 218 bits (554), Expect = 1e-54
Identities = 129/369 (34%), Positives = 194/369 (51%), Gaps = 6/369 (1%)
Frame = +1
Query: 77 SAQTFQTEEKKCKGYIPSYLDK------DELCVVCGDKATGYHYRCITCEGCKGFFRRTI 130
+AQ+ +T+ + +PS + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 469 TAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 648
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 649 QKNM--IYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETS---- 810
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
++ E T E +L + + +AH T Q K+
Sbjct: 811 ---------KQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLAKYTTNS------ 936
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 937 -SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILIL 1113
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 1114RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSA 1293
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L +++K Q+ L A + YI R+ H +PK+LMK+TDLR I A
Sbjct: 1294ICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKG 1473
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1474AERVITLKM 1500
>gb|AY046944.1| Mesocricetus auratus retinoic acid receptor beta-2 mRNA, complete
cds
Length = 2742
Score = 218 bits (554), Expect = 1e-54
Identities = 129/369 (34%), Positives = 194/369 (51%), Gaps = 6/369 (1%)
Frame = +1
Query: 77 SAQTFQTEEKKCKGYIPSYLDK------DELCVVCGDKATGYHYRCITCEGCKGFFRRTI 130
+AQ+ +T+ + +PS + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 619 TAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 798
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 799 QKNM--IYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEPS---- 960
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
++ E T E +L + + +AH T Q K+
Sbjct: 961 ---------KQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLAKYTTNS------ 1086
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 1087-SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILIL 1263
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 1264RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSA 1443
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L +++K Q+ L A + YI R+ H +PK+LMK+TDLR I A
Sbjct: 1444ICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKG 1623
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1624AERVITLKM 1650
>gb|AY046943.1| Mesocricetus auratus retinoic acid receptor alpha mRNA, complete
cds
Length = 2748
Score = 218 bits (554), Expect = 1e-54
Identities = 130/375 (34%), Positives = 194/375 (51%), Gaps = 12/375 (3%)
Frame = +3
Query: 77 SAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S T +T+ + +PS L C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 255 SPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 434
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 435 QKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK---------- 578
Query: 191 XXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPED 244
+K KPE T E ELI+ V +AH T Q K+ +
Sbjct: 579 ---------KKKEAAKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QLGKYTTNN 722
Query: 245 IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCC 304
+ + +D++ + F+++ T I + V+FAK+LP F L DQI LLK C
Sbjct: 723 SSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAAC 881
Query: 305 MEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTE 364
++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L +DD E
Sbjct: 882 LDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAE 1061
Query: 365 VALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
LL A+ L+ DR L ++++ Q+ L A + Y+ R+ H +PK+LMK+TDLR
Sbjct: 1062TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 1241
Query: 425 MIGACHASRFLHMKV 439
I A A R + +K+
Sbjct: 1242SISAKGAERVITLKM 1286
>ref|XM_053323.1| Homo sapiens retinoic acid receptor, beta (RARB), mRNA
Length = 3129
Score = 217 bits (553), Expect = 2e-54
Identities = 129/369 (34%), Positives = 194/369 (51%), Gaps = 6/369 (1%)
Frame = +2
Query: 77 SAQTFQTEEKKCKGYIPSYLDK------DELCVVCGDKATGYHYRCITCEGCKGFFRRTI 130
+AQ+ +T+ + +PS + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 617 TAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 796
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 797 QKNM--IYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETS---- 958
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
++ E T E +L + + +AH T Q K+
Sbjct: 959 ---------KQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS------ 1084
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 1085-SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILIL 1261
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 1262RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSA 1441
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L +++K Q+ L A + YI R+ H +PK+LMK+TDLR I A
Sbjct: 1442ICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKG 1621
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1622AERVITLKM 1648
>emb|X17585.1|NVRARAG Newt mRNA for retinoic acid receptor alpha (RAR-alpha)
Length = 1377
Score = 217 bits (553), Expect = 2e-54
Identities = 130/382 (34%), Positives = 200/382 (52%), Gaps = 12/382 (3%)
Frame = +1
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 145 VSAYSTPSPATIETQSTSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 324
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 325 GFFRRSIQKNM--VYTCHRDKTCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKK-- 492
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWELIKTVTEAHVATNAQGSHWKQK 237
+K K E T+ E +L++ V +AH T Q
Sbjct: 493 ----------------KKQEAPKQECTESYIITPEVEDLVEKVRKAHQETFPALC---QL 615
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + ++ E +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 616 GKYTTNN-------SSEERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 774
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 775 TLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 954
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L ++++K Q+ L A + Y+ R+ + H +PK+L
Sbjct: 955 LEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKML 1134
Query: 418 MKVTDLRMIGACHASRFLHMKV 439
MK+TDLR I A A R + +K+
Sbjct: 1135MKITDLRSISAKGAERVITLKM 1200
>ref|NM_000965.2| Homo sapiens retinoic acid receptor, beta (RARB), transcript
variant 1, mRNA
Length = 3119
Score = 217 bits (553), Expect = 2e-54
Identities = 129/369 (34%), Positives = 194/369 (51%), Gaps = 6/369 (1%)
Frame = +1
Query: 77 SAQTFQTEEKKCKGYIPSYLDK------DELCVVCGDKATGYHYRCITCEGCKGFFRRTI 130
+AQ+ +T+ + +PS + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 616 TAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 795
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 796 QKNM--IYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETS---- 957
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
++ E T E +L + + +AH T Q K+
Sbjct: 958 ---------KQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS------ 1083
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 1084-SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILIL 1260
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 1261RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSA 1440
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L +++K Q+ L A + YI R+ H +PK+LMK+TDLR I A
Sbjct: 1441ICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKG 1620
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1621AERVITLKM 1647
>gb|AF157483.1|AF157483 Homo sapiens retinoic acid receptor beta 4 (NR1B2) mRNA, complete
cds
Length = 1462
Score = 217 bits (552), Expect = 2e-54
Identities = 124/338 (36%), Positives = 182/338 (53%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 352 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 525
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 526 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 666
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 281
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 667 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 816
Query: 282 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGL 341
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 817 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 996
Query: 342 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 401
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 997 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1176
Query: 402 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
I R+ H +PK+LMK+TDLR I A A R + +K+
Sbjct: 1177IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 1290
>ref|NM_016152.2| Homo sapiens retinoic acid receptor, beta (RARB), transcript
variant 2, mRNA
Length = 2762
Score = 217 bits (552), Expect = 2e-54
Identities = 124/338 (36%), Positives = 182/338 (53%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + CVI+KVTRN+CQ CR
Sbjct: 352 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 525
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 526 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 666
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 281
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 667 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 816
Query: 282 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGL 341
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 817 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 996
Query: 342 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 401
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 997 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1176
Query: 402 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
I R+ H +PK+LMK+TDLR I A A R + +K+
Sbjct: 1177IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 1290
>gb|AF342936.1|AF342936 Danio rerio retinoic acid receptor alpha 1 mRNA, complete cds
Length = 1967
Score = 217 bits (552), Expect = 2e-54
Identities = 122/339 (35%), Positives = 185/339 (53%), Gaps = 1/339 (0%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 343 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 516
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC+ VGM+ + V +D + +K KPE T+ + T
Sbjct: 517 QKCLEVGMSKESVRNDRNK-------------------KKKEEKKPECTENY--TLSPDT 633
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGG-KVDLEAFSHFTKIITPAITRVVD 280
E + + +H + P +G+ N+ E +D++ + F+++ T I + V+
Sbjct: 634 EQMI-DRVRKAHQETFPSLC--QLGKYTTSNSSERRVALDVDLWDKFSELSTKCIIKTVE 804
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 805 FAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 984
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L A +
Sbjct: 985 FGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLLEALKI 1164
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y+ R+ H H +PK+LMK+TDLR I A A + +K+
Sbjct: 1165YVRNRRPHKPHMFPKMLMKITDLRSISAKGAELLITLKM 1281
>gb|L03398.1|ZEFRARA2A Zebrafish retinoic acid receptor alpha 2.A (RAR-alpha-2.A) mRNA,
complete cds
Length = 1967
Score = 217 bits (552), Expect = 2e-54
Identities = 122/339 (35%), Positives = 185/339 (53%), Gaps = 1/339 (0%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 343 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 516
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC+ VGM+ + V +D + +K KPE T+ + T
Sbjct: 517 QKCLEVGMSKESVRNDRNK-------------------KKKEEKKPECTENY--TLSPDT 633
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGG-KVDLEAFSHFTKIITPAITRVVD 280
E + + +H + P +G+ N+ E +D++ + F+++ T I + V+
Sbjct: 634 EQMI-DRVRKAHQETFPSLC--QLGKYTTSNSSERRVALDVDLWDKFSELSTKCIIKTVE 804
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 805 FAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 984
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L A +
Sbjct: 985 FGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLLEALKI 1164
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y+ R+ H H +PK+LMK+TDLR I A A + +K+
Sbjct: 1165YVRNRRPHKPHMFPKMLMKITDLRSISAKGAELLITLKM 1281
>emb|X78335.1|GGRARA21 G.gallus retinoic acid receptor alpha isoform 2-1 mRNA
Length = 1494
Score = 217 bits (552), Expect = 2e-54
Identities = 126/370 (34%), Positives = 193/370 (52%), Gaps = 6/370 (1%)
Frame = +1
Query: 76 SSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCKGFFRRT 129
+S ++ +T+ + +PS L C VC DK++GYHY CEGCKGFFRR+
Sbjct: 154 ASGRSVETQSTSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRS 333
Query: 130 IQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXX 189
IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 334 IQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKDVPKTE 507
Query: 190 XXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAP 249
T E ELI+ V +AH T Q K+ + +
Sbjct: 508 CSESYIV-------------TPEVEELIEKVRKAHQETFPALC---QLGKYTTNNSSEQR 639
Query: 250 IVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMS 309
+ +D++ + F+++ T I + V+FAK+LP F L DQI LLK C++I+
Sbjct: 640 V-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILI 798
Query: 310 LRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQ 369
LR RY PE +T+T + + + R Q+ N G G ++D +F L +DD E LL
Sbjct: 799 LRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLS 978
Query: 370 AVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGAC 429
A+ L+ DR L ++++K Q+ L A + Y+ R+ + H +PK+LMK+TDLR I A
Sbjct: 979 AICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRSISAK 1158
Query: 430 HASRFLHMKV 439
A R + +K+
Sbjct: 1159GAERVITLKM 1188
>gb|S56660.1|S56660 retinoic acid nuclear receptor isoform beta 2 [mice, embryonal
carcinoma cell line, PCC7-MZ1, mRNA, 2971 nt]
Length = 2971
Score = 216 bits (551), Expect = 3e-54
Identities = 129/369 (34%), Positives = 194/369 (51%), Gaps = 6/369 (1%)
Frame = +2
Query: 77 SAQTFQTEEKKCKGYIPSYLDK------DELCVVCGDKATGYHYRCITCEGCKGFFRRTI 130
+AQ+ +T+ + +PS + C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 506 TAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 685
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 686 QKNM--IYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEPS---- 847
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
++ E T E +L + + +AH T Q K+
Sbjct: 848 ---------KQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS------ 973
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 974 -SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILIL 1150
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 1151RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSA 1330
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L +++K Q+ L A + YI R+ H +PK+LMK+TDLR I A
Sbjct: 1331ICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKG 1510
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1511AERVITLKM 1537
>gb|AF342944.1|AF342944 Danio rerio retinoic acid receptor alpha 2 mRNA, complete cds
Length = 2539
Score = 216 bits (551), Expect = 3e-54
Identities = 122/338 (36%), Positives = 186/338 (54%)
Frame = +2
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRRTIQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 434 CFVCQDKSSGYHYGVSACEGCKGFFRRTIQKNM--VYTCHREKSCIINKVTRNRCQYCRL 607
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC+ VGM+ + V +D + Q+ + + D E ++I+ V
Sbjct: 608 QKCLEVGMSKESVRNDRNKRKKDDKK------------QECLENYVLSPDTE-KMIEQVR 748
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 281
+AH T Q K+ + +A +D++ + F+++ T I + V+F
Sbjct: 749 KAHQETFPSLC---QLGKYTTNN-------SADHRVALDVDLWDKFSELSTKCIIKTVEF 898
Query: 282 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGL 341
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 899 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGF 1078
Query: 342 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 401
G ++D +F L +DD E LL A+ L+ DR L +++++ Q+ L A + Y
Sbjct: 1079GPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQSDKVDELQEPLLEALKIY 1258
Query: 402 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ R+ H H +PK+LMK+TDLR I A A R + +K+
Sbjct: 1259VRNRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKM 1372
>gb|L03399.1|ZEFRARA2B Zebrafish retinoic acid receptor alpha 2.B (RAR-alpha-2.B) mRNA,
complete cds
Length = 2539
Score = 216 bits (551), Expect = 3e-54
Identities = 122/338 (36%), Positives = 186/338 (54%)
Frame = +2
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRRTIQKN+ Y+C E C+I+KVTRN+CQ CR
Sbjct: 434 CFVCQDKSSGYHYGVSACEGCKGFFRRTIQKNM--VYTCHREKSCIINKVTRNRCQYCRL 607
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC+ VGM+ + V +D + Q+ + + D E ++I+ V
Sbjct: 608 QKCLEVGMSKESVRNDRNKRKKDDKK------------QECLENYVLSPDTE-KMIEQVR 748
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 281
+AH T Q K+ + +A +D++ + F+++ T I + V+F
Sbjct: 749 KAHQETFPSLC---QLGKYTTNN-------SADHRVALDVDLWDKFSELSTKCIIKTVEF 898
Query: 282 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGL 341
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 899 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGF 1078
Query: 342 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 401
G ++D +F L +DD E LL A+ L+ DR L +++++ Q+ L A + Y
Sbjct: 1079GPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQSDKVDELQEPLLEALKIY 1258
Query: 402 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ R+ H H +PK+LMK+TDLR I A A R + +K+
Sbjct: 1259VRNRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKM 1372
>emb|Z14254.1|NVRARA2M N.viridescens mRNA for retinoic acid receptor alpha 2
Length = 1697
Score = 216 bits (551), Expect = 3e-54
Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 12/376 (3%)
Frame = +3
Query: 76 SSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCKGFFRRT 129
SS+ + +T+ + +PS L C VC DK++GYHY CEGCKGFFRR+
Sbjct: 483 SSSHSIETQSTSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRS 662
Query: 130 IQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXX 189
IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 663 IQKNM--VYTCHRDKTCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKK-------- 812
Query: 190 XXXXXXXXXLQKSIGHKPEPTD------EEWELIKTVTEAHVATNAQGSHWKQKPKFLPE 243
+K K E T+ E +L++ V +AH T Q K+
Sbjct: 813 ----------KKQEAPKQECTESYIITPEVEDLVEKVRKAHQETFPALC---QLGKYTTN 953
Query: 244 DIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 303
+ ++ E +D++ + F+++ T I + V+FAK+LP F L DQI LLK
Sbjct: 954 N-------SSEERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAA 1112
Query: 304 CMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 363
C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DD
Sbjct: 1113CLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDA 1292
Query: 364 EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDL 423
E LL A+ L+ DR L ++++K Q+ L A + Y+ R+ + H +PK+LMK+TDL
Sbjct: 1293ETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDL 1472
Query: 424 RMIGACHASRFLHMKV 439
R I A A R + +K+
Sbjct: 1473RSISAKGAERVITLKM 1520
>emb|X87365.1|XLRNARARA X.laevis mRNA for retinoic acid receptor alpha
Length = 2837
Score = 216 bits (550), Expect = 4e-54
Identities = 130/371 (35%), Positives = 193/371 (51%), Gaps = 7/371 (1%)
Frame = +1
Query: 76 SSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCKGFFRRT 129
SS + +T+ + +PS L C VC DK++GYHY CEGCKGFFRR+
Sbjct: 703 SSNHSIETQSTSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRS 882
Query: 130 IQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXX 189
IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 883 IQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--------- 1029
Query: 190 XXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVAT-NAQGSHWKQKPKFLPEDIGQA 248
+ +S PE D LI+ V +AH T A K F E
Sbjct: 1030 KKKEPPKVDVMESYVLSPETQD----LIEKVRKAHKETFPALCQLGKYTTNFSSE----- 1182
Query: 249 PIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 308
E +D++ + F+++ T I + V+FAK+LP F L DQI LLK C++I+
Sbjct: 1183 ------ERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACLDIL 1344
Query: 309 SLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALL 368
LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DD E LL
Sbjct: 1345 ILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL 1524
Query: 369 QAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGA 428
A+ L+ DR L ++++K Q+ L A + Y+ R+ H +PK+LMK+TDLR I A
Sbjct: 1525 SAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRNRRPKKPHMFPKMLMKITDLRSISA 1704
Query: 429 CHASRFLHMKV 439
A R + +K+
Sbjct: 1705 KGAERVITLKM 1737
>gb|U41743.1|HSU41743 Human nucleophosmin-retinoic acid receptor alpha fusion protein
NPM-RAR short form mRNA, complete cds
Length = 1944
Score = 216 bits (549), Expect = 5e-54
Identities = 125/344 (36%), Positives = 184/344 (53%), Gaps = 6/344 (1%)
Frame = +3
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 519 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 692
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 215
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 693 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 815
Query: 216 LIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 275
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 816 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 965
Query: 276 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQ 335
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 966 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1145
Query: 336 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 395
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 1146MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1325
Query: 396 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+
Sbjct: 1326EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 1457
>gb|U41742.1|HSU41742 Human nucleophosmin-retinoic acid receptor alpha fusion protein
NPM-RAR long form mRNA, complete cds
Length = 2073
Score = 216 bits (549), Expect = 5e-54
Identities = 125/344 (36%), Positives = 184/344 (53%), Gaps = 6/344 (1%)
Frame = +3
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 648 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 821
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 215
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 822 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 944
Query: 216 LIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 275
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 945 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1094
Query: 276 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQ 335
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 1095IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1274
Query: 336 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 395
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 1275MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1454
Query: 396 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+
Sbjct: 1455EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 1586
>gb|S50916.1|S50916 PML-RAR fusion gene {fusion transcript} [human, mRNA Partial, 1284
nt]
Length = 1284
Score = 216 bits (549), Expect = 5e-54
Identities = 125/344 (36%), Positives = 184/344 (53%), Gaps = 6/344 (1%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 124 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 297
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 215
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 298 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 420
Query: 216 LIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 275
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 421 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 570
Query: 276 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQ 335
+ V+FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q
Sbjct: 571 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 750
Query: 336 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 395
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 751 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 930
Query: 396 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+
Sbjct: 931 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 1062
>gb|S82175.1|S82175 RAR-gamma 2.2=retinoic acid receptor gamma isoform 2.2
{alternatively spliced} [Xenopus laevis, embryos, stage
24, mRNA, 2154 nt]
Length = 2154
Score = 215 bits (548), Expect = 6e-54
Identities = 130/369 (35%), Positives = 194/369 (52%), Gaps = 6/369 (1%)
Frame = +2
Query: 77 SAQTFQTEEKKCKGYIPSYLDKD------ELCVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S Q+ +T+ + +PS + C VC DK++GYHY +CEGCKGFFRR+I
Sbjct: 257 SMQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSI 436
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 437 QKNM--VYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRNDRNK--------KK 586
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
L S PE ELI+ V++AH T Q K+
Sbjct: 587 KEIKEEVVLPDSYEMPPEME----ELIQKVSKAHQETFPSLC---QLGKYTTNS------ 727
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A + ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 728 -SADQRVRLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILML 904
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 905 RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSA 1084
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L E++EK Q+ L A + Y R+ + +P++LMK+TDLR I
Sbjct: 1085ICLICGDRMDLEEPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKG 1264
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1265AERAITLKL 1291
>emb|X57528.1|MMRARA M.musculus mRNA for retinoic acid receptor-alpha
Length = 1926
Score = 215 bits (548), Expect = 6e-54
Identities = 129/371 (34%), Positives = 191/371 (50%), Gaps = 12/371 (3%)
Frame = +2
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 713 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 892
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 893 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFDVGMSKESVRNDRNK--- 1057
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 1058 ----------------KKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QL 1180
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 1181 GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 1339
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSS 357
LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1340 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 1519
Query: 358 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 417
+DD E LL A+ L+ DR L ++++ Q+ L A + Y+ R+ H +PK+L
Sbjct: 1520 LEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 1699
Query: 418 MKVTDLRMIGA 428
MK+TDLR I A
Sbjct: 1700 MKITDLRSISA 1732
>gb|L11445.1|XELXRARA Xenopus laevis mRNA sequence
Length = 1791
Score = 215 bits (548), Expect = 6e-54
Identities = 129/379 (34%), Positives = 194/379 (51%), Gaps = 13/379 (3%)
Frame = +3
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCKGFFR 127
S S T +T+ + +PS L C VC DK++GYHY CEGCKGFFR
Sbjct: 567 STPSPATIETQSTSSEEIVPSPPTPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFR 746
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 187
R+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 747 RSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK------- 899
Query: 188 XXXXXXXXXXXLQKSIGHKPEPTD------EEWELIKTVTEAHVAT-NAQGSHWKQKPKF 240
+K KPE + E +LI+ V +AH T A K F
Sbjct: 900 ------------KKKESPKPEAIESYILSPETQDLIEKVQKAHQETFPALCQLGKYTTSF 1043
Query: 241 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 300
E + +D++ + F+++ T I + V+FAK+LP F L DQI LL
Sbjct: 1044SSE-----------QRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLL 1190
Query: 301 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNL 360
K C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F +
Sbjct: 1191KSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQPVPLEM 1370
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DD E LL A+ L+ DR L ++++K Q+ L A + Y+ R+ H +PK+LMK+
Sbjct: 1371DDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRTRRPQKPHMFPKMLMKI 1550
Query: 421 TDLRMIGACHASRFLHMKV 439
TDLR + A A R + +K+
Sbjct: 1551TDLRTVSAKGAERVITLKM 1607
>gb|S82173.1|S82173 RAR-gamma 2.1=retinoic acid receptor gamma isoform 2.1
{alternatively spliced} [Xenopus laevis, embryos, stage
24, mRNA, 2188 nt]
Length = 2188
Score = 215 bits (548), Expect = 6e-54
Identities = 130/369 (35%), Positives = 194/369 (52%), Gaps = 6/369 (1%)
Frame = +3
Query: 77 SAQTFQTEEKKCKGYIPSYLDKD------ELCVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S Q+ +T+ + +PS + C VC DK++GYHY +CEGCKGFFRR+I
Sbjct: 291 SMQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSI 470
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 471 QKNM--VYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRNDRNK--------KK 620
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
L S PE ELI+ V++AH T Q K+
Sbjct: 621 KEIKEEVVLPDSYEMPPEME----ELIQKVSKAHQETFPSLC---QLGKYTTNS------ 761
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A + ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 762 -SADQRVRLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILML 938
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 939 RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSA 1118
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L E++EK Q+ L A + Y R+ + +P++LMK+TDLR I
Sbjct: 1119ICLICGDRMDLEEPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKG 1298
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1299AERAITLKL 1325
>gb|L11444.1|XELSRARG1A Xenopus laevis mRNA sequence
Length = 2416
Score = 214 bits (546), Expect = 1e-53
Identities = 125/338 (36%), Positives = 183/338 (53%)
Frame = +2
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 605 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRL 778
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + L S PE ELI+ V+
Sbjct: 779 QKCFQVGMSKEAVRNDRNK--------KKKEIKEEVVLPDSYEMPPEME----ELIQKVS 922
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 281
+AH T Q K+ +A + ++DL + F+++ T I ++V+F
Sbjct: 923 KAHQETFPSLC---QLGKYTTNS-------SADQRVQLDLGLWDKFSELSTKCIIKIVEF 1072
Query: 282 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGL 341
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1073AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1252
Query: 342 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 401
G ++D +F L +DDTE LL A+ L+ DR L E++EK Q+ L A + Y
Sbjct: 1253GPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVEKLQEPLLEALKFY 1432
Query: 402 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1433ARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKL 1546
>ref|XM_029728.3| Homo sapiens retinoic acid receptor, gamma (RARG), mRNA
Length = 2678
Score = 214 bits (544), Expect = 2e-53
Identities = 126/371 (33%), Positives = 196/371 (51%), Gaps = 7/371 (1%)
Frame = +1
Query: 76 SSAQTFQTEEKKCKGYIPSYLDKD------ELCVVCGDKATGYHYRCITCEGCKGFFRRT 129
+S Q+ +T+ + +PS + C VC DK++GYHY +CEGCKGFFRR+
Sbjct: 379 ASLQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRS 558
Query: 130 IQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXX 189
IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 559 IQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNK--------- 705
Query: 190 XXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAP 249
K K E + + +EL + E + T +H + P +G+
Sbjct: 706 -----------KKKEVKEEGSPDSYELSPQLEE--LITKVSKAHQETFPSLC--QLGKYT 840
Query: 250 I-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 308
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+
Sbjct: 841 TNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL 1020
Query: 309 SLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALL 368
LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL
Sbjct: 1021MLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLL 1200
Query: 369 QAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGA 428
A+ L+ DR L E+++K Q+ L A Y R+ + +P++LMK+TDLR I
Sbjct: 1201SAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGIST 1380
Query: 429 CHASRFLHMKV 439
A R + +K+
Sbjct: 1381KGAERAITLKM 1413
>emb|X59396.1|XLRARGB Xenopus laevis mRNA for retinoic acid receptor gamma B
Length = 2077
Score = 213 bits (543), Expect = 2e-53
Identities = 129/369 (34%), Positives = 193/369 (51%), Gaps = 6/369 (1%)
Frame = +1
Query: 77 SAQTFQTEEKKCKGYIPSYLDKD------ELCVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S Q+ +T+ + +PS + C VC DK++GYHY +CEGCKGFFRR+I
Sbjct: 211 SMQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSI 390
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 391 QKNM--VYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRNDRNK--------KK 540
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
L S PE ELI+ V++AH T Q K+
Sbjct: 541 KEIKEEVVLPDSYEMPPEME----ELIQKVSKAHQETFPSLC---QLGKYTTNS------ 681
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+A + ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 682 -SADQRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILML 858
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 859 RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSA 1038
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L E++EK Q+ L + Y R+ + +P++LMK+TDLR I
Sbjct: 1039ICLICGDRMDLEEPEKVEKLQEPLLEGLKFYARRRRPDKPYMFPRMLMKITDLRGISTKG 1218
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1219AERAITLKL 1245
>gb|AY046945.1| Mesocricetus auratus retinoic acid receptor gamma-2 gene, complete
cds
Length = 2510
Score = 213 bits (543), Expect = 2e-53
Identities = 126/371 (33%), Positives = 196/371 (51%), Gaps = 7/371 (1%)
Frame = +2
Query: 76 SSAQTFQTEEKKCKGYIPSYLDKD------ELCVVCGDKATGYHYRCITCEGCKGFFRRT 129
+S Q+ +T+ + +PS + C VC DK++GYHY +CEGCKGFFRR+
Sbjct: 227 ASLQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRS 406
Query: 130 IQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXX 189
IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 407 IQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNK--------- 553
Query: 190 XXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAP 249
K K E + + +EL + E + T +H + P +G+
Sbjct: 554 -----------KKKEVKEECSPDSYELSPQLEE--LITKVSKAHQETFPSLC--QLGKYT 688
Query: 250 I-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 308
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+
Sbjct: 689 TNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL 868
Query: 309 SLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALL 368
LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL
Sbjct: 869 MLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLL 1048
Query: 369 QAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGA 428
A+ L+ DR L E+++K Q+ L A Y R+ + +P++LMK+TDLR I
Sbjct: 1049SAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGIST 1228
Query: 429 CHASRFLHMKV 439
A R + +K+
Sbjct: 1229KGAERAITLKM 1261
>gb|M57707.1|HUMRARG Human retinoic acid receptor gamma mRNA, complete cds
Length = 1576
Score = 213 bits (542), Expect = 3e-53
Identities = 121/339 (35%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Frame = +2
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 467 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 640
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 641 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 760
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 761 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 928
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 929 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1108
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1109FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1288
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1289YARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1405
>ref|NM_000966.1| Homo sapiens retinoic acid receptor, gamma (RARG), mRNA
Length = 2571
Score = 213 bits (542), Expect = 3e-53
Identities = 121/339 (35%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Frame = +3
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 414 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 587
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 588 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 707
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 708 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 875
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 876 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1055
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1056FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1235
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1236YARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1352
>gb|M38258.1|HUMRARGA Human retinoic acid receptor gamma 1 mRNA, complete cds
Length = 2571
Score = 213 bits (542), Expect = 3e-53
Identities = 121/339 (35%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Frame = +3
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 414 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 587
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 588 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 707
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 708 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 875
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 876 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1055
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1056FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1235
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1236YARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1352
>gb|L12060.1|HUMRARG7A Homo sapiens retinoic acid receptor (gamma-7) mRNA
Length = 1597
Score = 213 bits (542), Expect = 3e-53
Identities = 121/339 (35%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 376 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 549
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 550 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 669
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 670 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 837
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 838 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1017
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1018FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1197
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1198YARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1314
>ref|NM_011244.1| Mus musculus retinoic acid receptor, gamma (Rarg), mRNA
Length = 1855
Score = 213 bits (542), Expect = 3e-53
Identities = 121/339 (35%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 583 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 756
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 757 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 876
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 877 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 1044
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1045FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1224
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1225FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1404
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1405YARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1521
>gb|M24857.1|HUMHRARC Human retinoic acid receptor gamma mRNA, complete cds
Length = 1903
Score = 213 bits (542), Expect = 3e-53
Identities = 121/339 (35%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 682 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 855
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 856 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 975
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 976 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 1143
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1144FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1323
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1324FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1503
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1504YARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1620
>gb|BC012923.1|BC012923 Mus musculus, Similar to retinoic acid receptor, gamma, clone
MGC:11555 IMAGE:3154037, mRNA, complete cds
Length = 2381
Score = 213 bits (542), Expect = 3e-53
Identities = 121/339 (35%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Frame = +2
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 689 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 862
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 863 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 982
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 983 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 1150
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1151 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1330
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1331 FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1510
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1511 YARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1627
>emb|X15848.1|MMRARG Mouse mRNA for retinoic acid receptor gamma
Length = 1912
Score = 213 bits (542), Expect = 3e-53
Identities = 121/339 (35%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 583 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 756
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 757 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 876
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 877 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 1044
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1045FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1224
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1225FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1404
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1405YARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1521
>gb|BC019098.1|BC019098 Homo sapiens, retinoic acid receptor, gamma, clone MGC:29569
IMAGE:5013273, mRNA, complete cds
Length = 2663
Score = 213 bits (542), Expect = 3e-53
Identities = 121/339 (35%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Frame = +3
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 405 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 578
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 579 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 698
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 699 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 866
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 867 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1046
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1047FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1226
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1227YARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1343
>ref|NM_031528.1| Rattus norvegicus Retinoic acid receptor, alpha (Rara), mRNA
Length = 2130
Score = 213 bits (542), Expect = 3e-53
Identities = 128/375 (34%), Positives = 194/375 (51%), Gaps = 12/375 (3%)
Frame = +1
Query: 77 SAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S + +T+ + +PS L C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 400 SNHSIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 579
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 580 QKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK---------- 723
Query: 191 XXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPED 244
+K KPE T E ELI+ V +A+ T Q K+ +
Sbjct: 724 ---------KKKETPKPECSESYTLTPEVGELIEKVRKANQETFPALC---QLGKYTTNN 867
Query: 245 IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCC 304
+ + +D++ + F+++ T I + V+FAK+LP F L DQI LLK C
Sbjct: 868 SSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAAC 1026
Query: 305 MEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTE 364
++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L +DD E
Sbjct: 1027LDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAE 1206
Query: 365 VALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
LL A+ L+ DR L ++++ Q+ L A + Y+ R+ H +PK+LMK+TDLR
Sbjct: 1207TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSQPHMFPKMLMKITDLR 1386
Query: 425 MIGACHASRFLHMKV 439
I A A R + +K+
Sbjct: 1387SISAKGAERVITLKM 1431
>gb|U15211.1|RNU15211 Rattus norvegicus retinoic acid receptor alpha 2 isoform (RAR)
mRNA, complete cds
Length = 2130
Score = 213 bits (542), Expect = 3e-53
Identities = 128/375 (34%), Positives = 194/375 (51%), Gaps = 12/375 (3%)
Frame = +1
Query: 77 SAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S + +T+ + +PS L C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 400 SNHSIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 579
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 580 QKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK---------- 723
Query: 191 XXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPED 244
+K KPE T E ELI+ V +A+ T Q K+ +
Sbjct: 724 ---------KKKETPKPECSESYTLTPEVGELIEKVRKANQETFPALC---QLGKYTTNN 867
Query: 245 IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCC 304
+ + +D++ + F+++ T I + V+FAK+LP F L DQI LLK C
Sbjct: 868 SSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAAC 1026
Query: 305 MEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTE 364
++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F L +DD E
Sbjct: 1027LDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAE 1206
Query: 365 VALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 424
LL A+ L+ DR L ++++ Q+ L A + Y+ R+ H +PK+LMK+TDLR
Sbjct: 1207TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSQPHMFPKMLMKITDLR 1386
Query: 425 MIGACHASRFLHMKV 439
I A A R + +K+
Sbjct: 1387SISAKGAERVITLKM 1431
>gb|M34475.1|MUSRARGB Mouse retinoic acid receptor gamma (RAR-gamma-B) mRNA, complete cds
Length = 2496
Score = 212 bits (540), Expect = 5e-53
Identities = 126/371 (33%), Positives = 195/371 (51%), Gaps = 7/371 (1%)
Frame = +1
Query: 76 SSAQTFQTEEKKCKGYIPSYLDKD------ELCVVCGDKATGYHYRCITCEGCKGFFRRT 129
+S Q+ +T+ + +PS + C VC DK++GYHY +CEGCKGFFRR+
Sbjct: 205 ASLQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRS 384
Query: 130 IQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXX 189
IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 385 IQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNK--------- 531
Query: 190 XXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAP 249
K K E + + +EL + E + T +H + P +G+
Sbjct: 532 -----------KKKEVKEEGSPDSYELSPQLEE--LITKVSKAHQETFPSLC--QLGKYT 666
Query: 250 I-VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 308
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+
Sbjct: 667 TNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL 846
Query: 309 SLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALL 368
LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL
Sbjct: 847 MLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLL 1026
Query: 369 QAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGA 428
A+ L+ DR L E+++K Q+ L A Y R + +P++LMK+TDLR I
Sbjct: 1027SAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRDPAKPYMFPRMLMKITDLRGIST 1206
Query: 429 CHASRFLHMKV 439
A R + +K+
Sbjct: 1207KGAERAITLKM 1239
>gb|BC013709.1|BC013709 Mus musculus, retinoic acid receptor, gamma, clone MGC:18523
IMAGE:3989967, mRNA, complete cds
Length = 2553
Score = 212 bits (540), Expect = 5e-53
Identities = 121/338 (35%), Positives = 183/338 (53%)
Frame = +2
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 317 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 490
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + ++ + E + + ELI V+
Sbjct: 491 QKCFEVGMSKEAVRNDRNKKKKEVK-------------EEGLPDSYELSPQLEELITKVS 631
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 281
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 632 KAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEF 781
Query: 282 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGL 341
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 782 AKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 961
Query: 342 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 401
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A Y
Sbjct: 962 GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLY 1141
Query: 402 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
R+ + +P++LMK+TDLR I A R + +K+
Sbjct: 1142ARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 1255
>gb|AF206315.1|AF206315 Ambystoma mexicanum retonoic acid receptor gamma 2 (NR1B3b) mRNA,
complete cds
Length = 4469
Score = 212 bits (539), Expect = 7e-53
Identities = 126/370 (34%), Positives = 194/370 (52%), Gaps = 6/370 (1%)
Frame = +2
Query: 76 SSAQTFQTEEKKCKGYIPSYLDKD------ELCVVCGDKATGYHYRCITCEGCKGFFRRT 129
+S Q+ +T+ + +PS + C VC DK++GYHY +CEGCKGFFRR+
Sbjct: 248 ASLQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRS 427
Query: 130 IQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXX 189
IQKN+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 428 IQKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEIK--- 592
Query: 190 XXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAP 249
++ + E E LI V++AH T Q K+
Sbjct: 593 ----------EEVVTDSYEMPPEMEALIAKVSKAHQETFPSLC---QLGKYTTNS----- 718
Query: 250 IVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMS 309
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+
Sbjct: 719 --SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILM 892
Query: 310 LRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQ 369
LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL
Sbjct: 893 LRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLS 1072
Query: 370 AVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGAC 429
A+ L+ DR L E+++K Q+ L A + Y R+ + + +P++LMK+TDLR I
Sbjct: 1073AICLICGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTK 1252
Query: 430 HASRFLHMKV 439
A R + +K+
Sbjct: 1253GAERAITLKM 1282
>emb|X17586.1|NVRARDG Newt mRNA for retinoic receptor delta (RAR-delta)
Length = 1600
Score = 211 bits (538), Expect = 9e-53
Identities = 121/338 (35%), Positives = 183/338 (53%)
Frame = +2
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 293 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 466
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + ++ + E E LI+ V+
Sbjct: 467 QKCFEVGMSKEAVRNDRNKKKKEIK-------------EEVVTDSYEMPPEMEALIQKVS 607
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 281
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 608 KAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWHKFSELATKCIIKIVEF 757
Query: 282 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGL 341
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 758 AKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 937
Query: 342 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 401
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A + Y
Sbjct: 938 GPLTDLVFAFAEQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIY 1117
Query: 402 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
R+ + + +P++LMK+TDLR I A R + +K+
Sbjct: 1118ARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKM 1231
>gb|M34476.1|MUSRARGA Mouse retinoic acid receptor gamma (mRAR-gamma-A) mRNA, complete
cds
Length = 2715
Score = 211 bits (538), Expect = 9e-53
Identities = 121/339 (35%), Positives = 183/339 (53%), Gaps = 1/339 (0%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR
Sbjct: 520 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 693
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + K K E + + +EL +
Sbjct: 694 QKCFEVGMSKEAVRNDRNK--------------------KKKEVKEEGSPDSYELSPQLE 813
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPI-VNAPEGGKVDLEAFSHFTKIITPAITRVVD 280
E + T +H + P +G+ +A ++DL + F+++ T I ++V+
Sbjct: 814 E--LITKVSKAHQETFPSLC--QLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 981
Query: 281 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGG 340
FAK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 982 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAG 1161
Query: 341 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 400
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A
Sbjct: 1162FGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRL 1341
Query: 401 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
Y R + +P++LMK+TDLR I A R + +K+
Sbjct: 1342YARRRDPAKPYMFPRMLMKITDLRGISTKGAERAITLKM 1458
>gb|AF342939.1|AF342939 Danio rerio retinoic acid receptor gamma 1 mRNA, complete cds
Length = 2103
Score = 211 bits (538), Expect = 9e-53
Identities = 129/369 (34%), Positives = 191/369 (50%), Gaps = 3/369 (0%)
Frame = +1
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
SV S +T T ++ PS + C VC DK++GYHY +CEGCKGFFRR+I
Sbjct: 397 SVRSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSI 576
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 577 QKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKDEVI 750
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
E + E EL+ V++AH T Q K+ I
Sbjct: 751 PPESY------------ELSGELEELVNKVSKAHQETFPSLC---QLGKYTTNSSSDHRI 885
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 886 -------QLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILML 1044
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 1045RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSA 1224
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L ER+++ Q+ L A + Y R+ + H +P++LMK+TDLR I
Sbjct: 1225ICLICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKG 1404
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1405AERAITLKM 1431
>gb|S74156.1|S74156 zRAR gamma =retinoic acid receptor gamma [zebrafish, embryos, mRNA,
2109 nt]
Length = 2109
Score = 211 bits (538), Expect = 9e-53
Identities = 129/369 (34%), Positives = 191/369 (50%), Gaps = 3/369 (0%)
Frame = +1
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
SV S +T T ++ PS + C VC DK++GYHY +CEGCKGFFRR+I
Sbjct: 397 SVRSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSI 576
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 577 QKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKDEVI 750
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
E + E EL+ V++AH T Q K+ I
Sbjct: 751 PPESY------------ELSGELEELVNKVSKAHQETFPSLC---QLGKYTTNSSSDHRI 885
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ L
Sbjct: 886 -------QLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILML 1044
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 1045RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSA 1224
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 430
+ L+ DR L ER+++ Q+ L A + Y R+ + H +P++LMK+TDLR I
Sbjct: 1225ICLICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKG 1404
Query: 431 ASRFLHMKV 439
A R + +K+
Sbjct: 1405AERAITLKM 1431
>emb|X69944.1|NVRARD1AB N.viridescens retinoic acid receptor delta 1a and 1b cDNA
Length = 2424
Score = 211 bits (538), Expect = 9e-53
Identities = 121/338 (35%), Positives = 183/338 (53%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 1117 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRL 1290
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + ++ + E E LI+ V+
Sbjct: 1291 QKCFEVGMSKEAVRNDRNKKKKEIK-------------EEVVTDSYEMPPEMEALIQKVS 1431
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 281
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 1432 KAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWHKFSELATKCIIKIVEF 1581
Query: 282 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGL 341
AK+LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G
Sbjct: 1582 AKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1761
Query: 342 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 401
G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A + Y
Sbjct: 1762 GPLTDLVFAFAEQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIY 1941
Query: 402 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
R+ + + +P++LMK+TDLR I A R + +K+
Sbjct: 1942 ARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKM 2055
>gb|AF206316.1|AF206316S1 Ambystoma mexicanum retonoic acid receptor gamma 2I (NR1B3c) mRNA,
complete cds
Length = 1426
Score = 211 bits (536), Expect = 1e-52
Identities = 126/370 (34%), Positives = 191/370 (51%), Gaps = 6/370 (1%)
Frame = +2
Query: 76 SSAQTFQTEEKKCKGYIPSYLDKD------ELCVVCGDKATGYHYRCITCEGCKGFFRRT 129
+S Q+ +T+ + +PS + C VC DK++GYHY +CEGCKGFFRR+
Sbjct: 209 ASLQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRS 388
Query: 130 IQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXX 189
IQKN+ Y+C + C I+KVTRN+CQ CR +KC VGM SK +
Sbjct: 389 IQKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGM--------SKEVVAAAAVRN 538
Query: 190 XXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAP 249
++ + E E LI V++AH T Q K+
Sbjct: 539 DRNKKKKEIKEEVVTDSYEMPPEMEALIAKVSKAHQETFPSLC---QLGKYTTNS----- 694
Query: 250 IVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMS 309
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+
Sbjct: 695 --SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILM 868
Query: 310 LRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQ 369
LR RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL
Sbjct: 869 LRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLS 1048
Query: 370 AVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGAC 429
A+ L+ DR L E+++K Q+ L A + Y R+ + + +P++LMK+TDLR I
Sbjct: 1049AICLICGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTK 1228
Query: 430 HASRFLHMKV 439
A R + +K+
Sbjct: 1229GAERAITLKM 1258
>emb|X73973.1|GGRARG2 G.gallus RAR-gamma2 mRNA for retinoic acid receptor
Length = 1584
Score = 210 bits (535), Expect = 2e-52
Identities = 121/338 (35%), Positives = 180/338 (52%)
Frame = +3
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VC DK++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR
Sbjct: 432 CFVCSDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRL 605
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM+ + V +D + +++ PE + ELI+ V+
Sbjct: 606 QKCFEVGMSKEAVRNDRNK--------------KKKEVKEEAADSPELSPALEELIQKVS 743
Query: 222 EAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 281
AH T Q K+ Q + ++D + F+++ T I ++V+F
Sbjct: 744 RAHQETFPSLC---QLGKYTMSSSAQHRV-------QLDPGLWDKFSELATKCIIKIVEF 893
Query: 282 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGL 341
AK+LP F L DQI LLK C++I+ LR RY E +T+T + + + R Q+ N G
Sbjct: 894 AKRLPGFTALSIADQITLLKAACLDILMLRICTRYTLEQDTMTFSDGLTLNRTQMHNAGF 1073
Query: 342 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 401
G ++D +F L +DDTE LL A+ L+ DR L E++E+ Q+ L A Y
Sbjct: 1074GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRQDLEEPEQVERLQEPLLEALRVY 1253
Query: 402 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
R+ H +P++LMK+TDLR I A R + +K+
Sbjct: 1254ARRRRPSKPHMFPRMLMKITDLRGISTKGAERAITLKM 1367
>dbj|D86615.1|D86615 Polyandrocarpa misakiensis mRNA for retinoic acid receptor
homologue, partial cds
Length = 2245
Score = 209 bits (532), Expect = 4e-52
Identities = 117/337 (34%), Positives = 181/337 (52%), Gaps = 11/337 (3%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
C VCGDK++GYHY +CEGCKGFFRR++QKN+ Y+C CVI+K TR++CQ CR
Sbjct: 208 CFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQ--YTCHRNKNCVINKSTRSRCQYCRL 381
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC VGM + V +D + ++ + T E ++ V
Sbjct: 382 QKCFQVGMLKESVRNDRNKKRGKEKDGKTGDTSPSGQPEEIV-----VTPEIENIVSVVA 546
Query: 222 EAHVAT-----------NAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKI 270
+AH+ T A+G K P D +P VD++ +S F+ +
Sbjct: 547 KAHLDTFPKNEDLNKYNTAEGQGDKPLSPPTPSDASGSP-------PPVDVKLWSKFSDL 705
Query: 271 ITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMA 330
T +I ++V+FAK +P F +L DQI LLK C+EI+ R RYD ++T++ + +
Sbjct: 706 STKSIIKIVEFAKSVPGFTDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLT 885
Query: 331 VIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 390
+ R QL+N G +++ +F SL+ F+LD TE LL A+ LM +DR L E++EK
Sbjct: 886 LNRDQLRNCAFGPMTEQVFGFAKSLTPFDLDHTEGGLLCAICLMCADRTELEDPEKVEKL 1065
Query: 391 QDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIG 427
Q+ + + + ++ + H +PK+LMK+ DLR IG
Sbjct: 1066QEPLVEGLKWFARKKRPNKPHVFPKMLMKIADLRCIG 1176
>ref|NM_005693.1| Homo sapiens nuclear receptor subfamily 1, group H, member 3
(NR1H3), mRNA
Length = 1528
Score = 196 bits (498), Expect = 4e-48
Identities = 115/359 (32%), Positives = 191/359 (53%), Gaps = 4/359 (1%)
Frame = +3
Query: 85 EKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG 144
+K+ KG P L +ELC VCGDKA+G+HY ++CEGCKGFFRR++ K H Y C G
Sbjct: 279 QKRKKGPAPKMLG-NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAH--YICHSGG 449
Query: 145 KCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSI 203
C +D R +CQECR +KC GM + VL + + RL ++S
Sbjct: 450 HCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRRSS 629
Query: 204 GHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDL 261
+ P+ + E+ +I+ + A N + + + + P P+ P +
Sbjct: 630 PPQILPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PMAPDPHSREARQ 788
Query: 262 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 321
+ F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE
Sbjct: 789 QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSE 968
Query: 322 TLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
++T + + R GL V + IF+ +++ L+D E ALL A+ + S+DRP
Sbjct: 969 SITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPN 1148
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ ++E+ Q +++ A Y++ H +P++LMK+ LR + + H+ + +++
Sbjct: 1149VQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRL 1325
>gb|U22662.1|HSU22662 Human nuclear orphan receptor LXR-alpha mRNA, complete cds
Length = 1528
Score = 196 bits (498), Expect = 4e-48
Identities = 115/359 (32%), Positives = 191/359 (53%), Gaps = 4/359 (1%)
Frame = +3
Query: 85 EKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG 144
+K+ KG P L +ELC VCGDKA+G+HY ++CEGCKGFFRR++ K H Y C G
Sbjct: 279 QKRKKGPAPKMLG-NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAH--YICHSGG 449
Query: 145 KCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSI 203
C +D R +CQECR +KC GM + VL + + RL ++S
Sbjct: 450 HCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRRSS 629
Query: 204 GHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDL 261
+ P+ + E+ +I+ + A N + + + + P P+ P +
Sbjct: 630 PPQILPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PMAPDPHSREARQ 788
Query: 262 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 321
+ F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE
Sbjct: 789 QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSE 968
Query: 322 TLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
++T + + R GL V + IF+ +++ L+D E ALL A+ + S+DRP
Sbjct: 969 SITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPN 1148
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ ++E+ Q +++ A Y++ H +P++LMK+ LR + + H+ + +++
Sbjct: 1149VQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRL 1325
>emb|AJ132601.1|MMU132601 Mus musculus mRNA for nuclear oxysterol receptor LXR-alpha
(LXR-alpha)
Length = 1686
Score = 194 bits (493), Expect = 1e-47
Identities = 115/359 (32%), Positives = 190/359 (52%), Gaps = 4/359 (1%)
Frame = +1
Query: 85 EKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG 144
+K+ KG P L +ELC VCGDKA+G+HY ++CEGCKGFFRR++ K Y C G
Sbjct: 358 QKRKKGPAPKMLG-NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAR--YVCHSGG 528
Query: 145 KCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSI 203
C +D R +CQECR +KC GM + VL + + RL + S
Sbjct: 529 HCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSS 708
Query: 204 GHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDL 261
+ P+ + E+ +I+ + A N + + + + P PI P+ +
Sbjct: 709 PPQVLPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PIAPDPQSREARQ 867
Query: 262 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 321
+ F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE
Sbjct: 868 QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSE 1047
Query: 322 TLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
++T + + R GL V + IF+ +++ L+D E ALL A+ + S+DRP
Sbjct: 1048SITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPN 1227
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ ++E+ Q +++ A Y++ H +P++LMK+ LR + + H+ + +++
Sbjct: 1228VQDQLQVERLQHTYVEALHAYVSINHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRL 1404
>emb|Y11533.1|TMECDYREC T.molitor mRNA for ecdysone receptor
Length = 2469
Score = 194 bits (493), Expect = 1e-47
Identities = 133/405 (32%), Positives = 201/405 (48%), Gaps = 14/405 (3%)
Frame = +1
Query: 49 SSPHLIQTTWTSSIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDK 108
+S H + + TSS+ +D++ S++ + KK KG P+ ++ELC+VCGD+
Sbjct: 1072 ASNHHLAKSDTSSMS--GREDLSPSSLNGYSADSCDSKKKKG--PTPRQQEELCLVCGDR 1239
Query: 109 ATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVG 168
A+GYHY +TCEGCKGFFRR+I KN Y CKY C ID R +CQECR KKC+ VG
Sbjct: 1240 ASGYHYNALTCEGCKGFFRRSITKNA--VYQCKYGNNCEIDMYMRRKCQECRLKKCLSVG 1413
Query: 169 MATDLVLDDS----KRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAH 224
M + V+ + KR I +PE +D E KT+T
Sbjct: 1414 MRPECVVPEVQCAVKRKEKKAQKEKDKPNSTTNGSPDVIKIEPELSDSE----KTLTNGR 1581
Query: 225 VATNAQGSH--------WKQKPKFLPEDIGQAPIVNAPEGGKVDLEA-FSHFTKIITPAI 275
+ + + Q P + I+N P G+ E F H T+I +
Sbjct: 1582 NRISPEQEELILIHRLVYFQNEYEHPSEEDVKRIINQPIDGEDQCEIRFRHTTEITILTV 1761
Query: 276 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQ 335
+V+FAK+LP F +L EDQI LLK C E+M R A RYD +S+++ R
Sbjct: 1762 QLIVEFAKRLPGFDKLLQEDQIALLKACSSEVMMFRMARRYDVQSDSILFVNNQPYPRDS 1941
Query: 336 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 395
G+G + + ++ S +D+ E ALL A+++ S+RP L ++EK Q+ +L
Sbjct: 1942 YNLAGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVIF-SERPSLIEGWKVEKIQEIYL 2118
Query: 396 LAFEHYI-NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
A Y+ N R + KLL +T+LR +G ++ + +K+
Sbjct: 2119 EALRAYVDNRRSPSRGTIFAKLLSVLTELRTLGNQNSEMCISLKL 2253
>ref|NM_013839.1| Mus musculus nuclear receptor subfamily 1, group H, member 3
(Nr1h3), mRNA
Length = 1753
Score = 194 bits (493), Expect = 1e-47
Identities = 115/359 (32%), Positives = 190/359 (52%), Gaps = 4/359 (1%)
Frame = +1
Query: 85 EKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG 144
+K+ KG P L +ELC VCGDKA+G+HY ++CEGCKGFFRR++ K Y C G
Sbjct: 427 QKRKKGPAPKMLG-NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAR--YVCHSGG 597
Query: 145 KCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSI 203
C +D R +CQECR +KC GM + VL + + RL + S
Sbjct: 598 HCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSS 777
Query: 204 GHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDL 261
+ P+ + E+ +I+ + A N + + + + P PI P+ +
Sbjct: 778 PPQVLPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PIAPDPQSREARQ 936
Query: 262 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 321
+ F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE
Sbjct: 937 QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSE 1116
Query: 322 TLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
++T + + R GL V + IF+ +++ L+D E ALL A+ + S+DRP
Sbjct: 1117SITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPN 1296
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ ++E+ Q +++ A Y++ H +P++LMK+ LR + + H+ + +++
Sbjct: 1297VQDQLQVERLQHTYVEALHAYVSINHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRL 1473
>gb|BC012646.1|BC012646 Mus musculus, Similar to nuclear receptor subfamily 1, group H,
member 3, clone MGC:13756 IMAGE:4163109, mRNA, complete
cds
Length = 1765
Score = 194 bits (493), Expect = 1e-47
Identities = 115/359 (32%), Positives = 190/359 (52%), Gaps = 4/359 (1%)
Frame = +2
Query: 85 EKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG 144
+K+ KG P L +ELC VCGDKA+G+HY ++CEGCKGFFRR++ K Y C G
Sbjct: 368 QKRKKGPAPKMLG-NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAR--YVCHSGG 538
Query: 145 KCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSI 203
C +D R +CQECR +KC GM + VL + + RL + S
Sbjct: 539 HCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSS 718
Query: 204 GHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDL 261
+ P+ + E+ +I+ + A N + + + + P PI P+ +
Sbjct: 719 PPQVLPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PIAPDPQSREARQ 877
Query: 262 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 321
+ F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE
Sbjct: 878 QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSE 1057
Query: 322 TLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
++T + + R GL V + IF+ +++ L+D E ALL A+ + S+DRP
Sbjct: 1058SITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPN 1237
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ ++E+ Q +++ A Y++ H +P++LMK+ LR + + H+ + +++
Sbjct: 1238VQDQLQVERLQHTYVEALHAYVSINHPHDPLMFPRMLMKLVSLRTLSSVHSEQVFALRL 1414
>gb|AF085745.1|AF085745 Mus musculus nuclear orphan receptor LXR-alpha mRNA, complete cds
Length = 1665
Score = 194 bits (493), Expect = 1e-47
Identities = 115/359 (32%), Positives = 190/359 (52%), Gaps = 4/359 (1%)
Frame = +1
Query: 85 EKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG 144
+K+ KG P L +ELC VCGDKA+G+HY ++CEGCKGFFRR++ K Y C G
Sbjct: 322 QKRKKGPAPKMLG-NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAR--YVCHSGG 492
Query: 145 KCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSI 203
C +D R +CQECR +KC GM + VL + + RL + S
Sbjct: 493 HCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSS 672
Query: 204 GHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDL 261
+ P+ + E+ +I+ + A N + + + + P PI P+ +
Sbjct: 673 PPQVLPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PIAPDPQSREARQ 831
Query: 262 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 321
+ F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE
Sbjct: 832 QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSE 1011
Query: 322 TLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
++T + + R GL V + IF+ +++ L+D E ALL A+ + S+DRP
Sbjct: 1012SITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPN 1191
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ ++E+ Q +++ A Y++ H +P++LMK+ LR + + H+ + +++
Sbjct: 1192VQDQLQVERLQHTYVEALHAYVSINHPHDPLMFPRMLMKLVSLRTLSSVHSEQVFALRL 1368
>ref|NM_031627.1| Rattus norvegicus nuclear receptor subfamily 1, group H, member 3
(Nr1h3), mRNA
Length = 1723
Score = 194 bits (493), Expect = 1e-47
Identities = 115/359 (32%), Positives = 190/359 (52%), Gaps = 4/359 (1%)
Frame = +1
Query: 85 EKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG 144
+K+ KG P L +ELC VCGDKA+ +HY ++CEGCKGFFRR++ K Y C G
Sbjct: 262 QKRKKGPAPKMLG-NELCSVCGDKASAFHYNVLSCEGCKGFFRRSVIKGAR--YICHSGG 432
Query: 145 KCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSI 203
C +D R +CQECR +KC + GM + VL + + RL + S
Sbjct: 433 HCPMDTYMRRKCQECRLRKCRHAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSS 612
Query: 204 GHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDL 261
+ P+ + E+ +I+ + A N + + + + P PI P+ +
Sbjct: 613 PPQVLPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PIAPDPQSREARQ 771
Query: 262 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 321
+ F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE
Sbjct: 772 QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSE 951
Query: 322 TLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
++T + + R GL V + IF+ S++ L+D E ALL A+ + S+DRP
Sbjct: 952 SITFLKDFSYNREDFAKAGLQVEFINPIFEFSRSMNELQLNDAEFALLIAISIFSADRPN 1131
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ ++E+ Q +++ A Y++ H +P++LMK+ LR + + H+ + +++
Sbjct: 1132VQDQLQVERLQHTYVEALHAYVSINHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRL 1308
>gb|U11685.1|RNU11685 Rattus norvegicus orphan receptor RLD-1 (rld-1) mRNA, complete cds
Length = 1723
Score = 194 bits (493), Expect = 1e-47
Identities = 115/359 (32%), Positives = 190/359 (52%), Gaps = 4/359 (1%)
Frame = +1
Query: 85 EKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG 144
+K+ KG P L +ELC VCGDKA+ +HY ++CEGCKGFFRR++ K Y C G
Sbjct: 262 QKRKKGPAPKMLG-NELCSVCGDKASAFHYNVLSCEGCKGFFRRSVIKGAR--YICHSGG 432
Query: 145 KCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSI 203
C +D R +CQECR +KC + GM + VL + + RL + S
Sbjct: 433 HCPMDTYMRRKCQECRLRKCRHAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSS 612
Query: 204 GHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDL 261
+ P+ + E+ +I+ + A N + + + + P PI P+ +
Sbjct: 613 PPQVLPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PIAPDPQSREARQ 771
Query: 262 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 321
+ F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L + RY+P SE
Sbjct: 772 QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSE 951
Query: 322 TLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
++T + + R GL V + IF+ S++ L+D E ALL A+ + S+DRP
Sbjct: 952 SITFLKDFSYNREDFAKAGLQVEFINPIFEFSRSMNELQLNDAEFALLIAISIFSADRPN 1131
Query: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ ++E+ Q +++ A Y++ H +P++LMK+ LR + + H+ + +++
Sbjct: 1132VQDQLQVERLQHTYVEALHAYVSINHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRL 1308
>gb|AF342940.1|AF342940 Danio rerio retinoic acid receptor gamma 2 mRNA, partial cds
Length = 1101
Score = 193 bits (490), Expect = 3e-47
Identities = 119/346 (34%), Positives = 175/346 (50%), Gaps = 3/346 (0%)
Frame = +1
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
SV S +T T ++ PS + C VC DK++GYHY +CEGCKGFFRR+I
Sbjct: 136 SVRSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSI 315
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 316 QKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKDEVI 489
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
E + E EL+ V++AH T Q K+ I
Sbjct: 490 PPESY------------ELSGELEELVNKVSKAHQETFPSLC---QLGKYTTNSSSDHRI 624
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
++DL + F+++ T I ++V+FAK LP F L DQI LLK C++I+ L
Sbjct: 625 -------QLDLGLWDKFSELSTKCIIKIVEFAKALPGFTTLTIADQITLLKSACLDILML 783
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 784 RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSA 963
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 416
+ L+ DR L ER+++ Q+ L A + Y R+ + H +PK+
Sbjct: 964 ICLICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPKI 1101
>gb|L03400.1|ZEFRARGII Zebrafish retinoic acid receptor gamma-2 (RAR-gamma) mRNA, partial
cds
Length = 1101
Score = 193 bits (490), Expect = 3e-47
Identities = 119/346 (34%), Positives = 175/346 (50%), Gaps = 3/346 (0%)
Frame = +1
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDEL---CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
SV S +T T ++ PS + C VC DK++GYHY +CEGCKGFFRR+I
Sbjct: 136 SVRSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSI 315
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 316 QKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKDEVI 489
Query: 191 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPI 250
E + E EL+ V++AH T Q K+ I
Sbjct: 490 PPESY------------ELSGELEELVNKVSKAHQETFPSLC---QLGKYTTNSSSDHRI 624
Query: 251 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
++DL + F+++ T I ++V+FAK LP F L DQI LLK C++I+ L
Sbjct: 625 -------QLDLGLWDKFSELSTKCIIKIVEFAKALPGFTTLTIADQITLLKSACLDILML 783
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R RY PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A
Sbjct: 784 RICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSA 963
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 416
+ L+ DR L ER+++ Q+ L A + Y R+ + H +PK+
Sbjct: 964 ICLICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPKI 1101
>gb|AC093927.2| Homo sapiens chromosome 3 clone RP11-81I24, complete sequence
Length = 183263
Score = 192 bits (487), Expect = 7e-47
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = +1
Query: 3 ENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTSSI 62
ENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTSSI
Sbjct: 109387 ENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTSSI 109566
Query: 63 FHLDHDDVNDQSVSSAQTFQTEEKKCKG 90
FHLDHDDVNDQSVSSAQTFQTEEKKCKG
Sbjct: 109567 FHLDHDDVNDQSVSSAQTFQTEEKKCKG 109650
Score = 167 bits (423), Expect = 2e-39
Identities = 85/87 (97%), Positives = 86/87 (98%)
Frame = +2
Query: 290 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIF 349
+LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV RGQLKNGGLGVVSDAIF
Sbjct: 171989 QLPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIF 172168
Query: 350 DLGMSLSSFNLDDTEVALLQAVLLMSS 376
DLGMSLSSFNLDDTEVALLQAVLLMSS
Sbjct: 172169 DLGMSLSSFNLDDTEVALLQAVLLMSS 172249
Score = 139 bits (351), Expect = 4e-31
Identities = 64/67 (95%), Positives = 65/67 (96%)
Frame = +2
Query: 373 LMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHAS 432
L +DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHAS
Sbjct: 176615 LFPADRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHAS 176794
Query: 433 RFLHMKV 439
RFLHMKV
Sbjct: 176795 RFLHMKV 176815
Score = 110 bits (276), Expect = 2e-22
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +2
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATD 172
GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATD
Sbjct: 152900 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATD 153046
Score = 103 bits (257), Expect = 3e-20
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 242 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 291
PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCE+
Sbjct: 166273 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEV 166422
Score = 102 bits (253), Expect = 1e-19
Identities = 51/69 (73%), Positives = 52/69 (74%)
Frame = +3
Query: 173 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 232
+VLDDSKRLA LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS
Sbjct: 156015 VVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 156194
Query: 233 HWKQKPKFL 241
HWKQK KFL
Sbjct: 156195 HWKQKRKFL 156221
Score = 82.4 bits (202), Expect = 8e-14
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 123
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK
Sbjct: 147231 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 147332
>gb|AF034086.2|AF034086 Celuca pugilator ecdysteroid receptor (UpEcR) mRNA, complete cds
Length = 4562
Score = 189 bits (480), Expect = 5e-46
Identities = 141/450 (31%), Positives = 201/450 (44%), Gaps = 25/450 (5%)
Frame = +1
Query: 3 ENGLTAWDKPKHCPDREHDWKLVGMSEACLHRK----SHSERRSTLKNEQSSPHLIQTTW 58
E L WD + P H V + A L S S+ S + SP
Sbjct: 469 EVDLDFWDLDLNSPSPPHGMASVASTNALLLNPRAVASPSDTSSLSGRDDMSP------- 627
Query: 59 TSSIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCIT 118
SS+ + D D KK KG IP ++ELC+VCGD+A+GYHY +T
Sbjct: 628 PSSLSNFGADSYGDL------------KKKKGPIPR--QQEELCLVCGDRASGYHYNALT 765
Query: 119 CEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVL--- 175
CEGCKGFFRR+I KN Y CKY C +D R +CQECR KKC+ VGM + V+
Sbjct: 766 CEGCKGFFRRSITKN--AVYQCKYGNNCEMDMYMRRKCQECRLKKCLNVGMRPECVVPES 939
Query: 176 ------------DDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE-----PTDEEWELIK 218
D K + K + P T E+ ELI
Sbjct: 940 QCQVKREQKKARDKDKTYPSLGSPIAEDKAAPISPVSKDMSAAPRLNVKPLTREQEELIN 1119
Query: 219 TVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRV 278
T+ + Q+ P + I +G F H T++ + +
Sbjct: 1120TLV------------YYQEEFEQPTEADVKKIRFNFDGEDTSDMRFRHITEMTILTVQLI 1263
Query: 279 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKN 338
V+F+K+LP F L EDQI LLK C E+M LRAA RYD +++++ +
Sbjct: 1264VEFSKQLPGFATLQREDQITLLKACSSEVMMLRAARRYDAKTDSIVFGNNYPYTQASYAL 1443
Query: 339 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAF 398
GLG ++ +F SL +D+ E ALL A+ + S+RP L ++++EK Q+ +L A
Sbjct: 1444AGLGESAEILFRFCRSLCKMKVDNAEYALLAAIAIF-SERPNLKELKKVEKLQEIYLEAL 1620
Query: 399 EHYI-NYRKHHVTHFWPKLLMKVTDLRMIG 427
+ Y+ N R + KLL +T+LR +G
Sbjct: 1621KSYVENRRLPRSNMVFAKLLNILTELRTLG 1710
>dbj|AB073784.1|AB073784 Paralichthys olivaceus fRAR-2 mRNA for retinoic acid receptor
unknown type, partial cds
Length = 854
Score = 186 bits (472), Expect = 4e-45
Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 1/310 (0%)
Frame = +1
Query: 108 KATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYV 167
K++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR +KC V
Sbjct: 1 KSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRLQKCFAV 174
Query: 168 GMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVAT 227
GM+ + V +D + +K KPE E +EL T +
Sbjct: 175 GMSKESVRNDRNK-------------------KKKESPKPE-LAESYEL--TAELESIIE 288
Query: 228 NAQGSHWKQKPKFLPEDIGQ-APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLP 286
+ +H + P +G+ +A ++DL + F+++ T I ++V+FAK++P
Sbjct: 289 KIRKAHQETFPSLC--QLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRVP 462
Query: 287 MFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSD 346
F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D
Sbjct: 463 GFTGLTIADQITLLKAACLDILILRICTRYTPDKDTMTFSDGLTLNRTQMHNAGFGPLTD 642
Query: 347 AIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRK 406
+F L +DDTE LL A+ L+S DR L ++++ Q+ L A + Y+ R+
Sbjct: 643 LVFTFANQLLPIEMDDTETGLLSAICLISGDRQDLEEPSKVDQLQEPLLEALKIYVRKRR 822
Query: 407 HHVTHFWPKL 416
H +PK+
Sbjct: 823 PSKPHMFPKM 852
>dbj|AB073781.1|AB073781 Paralichthys olivaceus fRARg mRNA for retinoic acid receptor gamma,
partial cds
Length = 857
Score = 184 bits (467), Expect = 1e-44
Identities = 106/309 (34%), Positives = 163/309 (52%)
Frame = +1
Query: 108 KATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYV 167
K++GYHY +CEGCKGFFRR+IQKN+ Y+C + C I+KVTRN+CQ CR +KC V
Sbjct: 1 KSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEV 174
Query: 168 GMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVAT 227
GM+ + V +D + + + E + E EL+ V++AH T
Sbjct: 175 GMSKEAVRNDRNKKKKDVKE------------EVVLPESYELSGELEELVNKVSKAHQET 318
Query: 228 NAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPM 287
Q K+ + ++DL + F+++ T I ++V+FAK+LP
Sbjct: 319 FPSLG---QLGKYTTNSSSDHRV-------QLDLGLWDKFSELSTKCIIKIVEFAKRLPG 468
Query: 288 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDA 347
F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D
Sbjct: 469 FTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDL 648
Query: 348 IFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKH 407
+F L +DDTE LL A+ L+ DR L ++++K Q+ L A + Y R+
Sbjct: 649 VFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPQKVDKLQEPLLEALKIYARRRRP 828
Query: 408 HVTHFWPKL 416
+ H +PK+
Sbjct: 829 NKPHMFPKM 855
>dbj|AB073783.1|AB073783 Paralichthys olivaceus fRARa mRNA for retinoic acid receptor alpha,
partial cds
Length = 860
Score = 182 bits (463), Expect = 4e-44
Identities = 105/312 (33%), Positives = 163/312 (51%), Gaps = 3/312 (0%)
Frame = +1
Query: 108 KATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYV 167
K++GYHY CEGCKGFFRR+IQKN+ Y+C E C+I+KVTRN+CQ CR +KC+ V
Sbjct: 1 KSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRLQKCLEV 174
Query: 168 GMATDL--VLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHV 225
GM+ + V +D + K K + E + L + +
Sbjct: 175 GMSKECESVRNDRNK--------------------KKKDEKKQECTESYVLSPDTEQ--M 288
Query: 226 ATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGG-KVDLEAFSHFTKIITPAITRVVDFAKK 284
+ +H + P +G+ N+ E +D++ + F+++ T I + V+FAK+
Sbjct: 289 IDRVRKAHKETFPSLC--QLGKYTTSNSSERRVSLDVDLWDKFSELSTKCIIKTVEFAKQ 462
Query: 285 LPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVV 344
LP F L DQI LLK C++I+ LR RY PE +T+T + + + R Q+ N G G +
Sbjct: 463 LPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPL 642
Query: 345 SDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINY 404
+D +F L +DD E LL A+ L+ DR L E+++ Q+ L A + Y+
Sbjct: 643 TDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEEAEKVDVLQEPLLEALKIYVRK 822
Query: 405 RKHHVTHFWPKL 416
R+ H H +PK+
Sbjct: 823 RRPHKPHMFPKM 858
>gb|AF049136.1|AF049136 Locusta migratoria ecdysone receptor mRNA, complete cds
Length = 2401
Score = 182 bits (463), Expect = 4e-44
Identities = 119/366 (32%), Positives = 179/366 (48%), Gaps = 10/366 (2%)
Frame = +1
Query: 84 EEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYE 143
+ KK KG P ++ELC+VCGD+A+GYHY +TCEGCKGFFRR+I KN Y CKY
Sbjct: 1030 DAKKKKGAAPR--QQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYQCKYG 1197
Query: 144 GKCVIDKVTRNQCQECRFKKCIYVGMATDLVL---------DDSKRLAXXXXXXXXXXXX 194
C ID R +CQECR KKC+ VGM + V+ + K
Sbjct: 1198 NNCEIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKDKDKPNSTTNGS 1377
Query: 195 XXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAP 254
+ K I K EP IK V+ + +++ + + E+ +
Sbjct: 1378 PEVMMLKDIDAKVEPERPLSNGIKPVSPEQEELIHRLVYFQNEYESPSEEDLRRVTSQPT 1557
Query: 255 EGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 314
EG F H T+I + +V+FAK+LP F +L EDQI LLK C E+M R A
Sbjct: 1558 EGEDQSDVRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMAR 1737
Query: 315 RYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 374
RYD S+++ + G+G + + + + +D+ E ALL A+++
Sbjct: 1738 RYDVNSDSILFANNQPYTKDSYNLAGMGETIEDMLRFCRQMYAMKVDNAEYALLTAIVIF 1917
Query: 375 SSDRPGLACVERIEKYQDSFLLAFEHYI-NYRKHHVTHFWPKLLMKVTDLRMIGACHASR 433
S+RP L ++EK Q+ +L A + Y+ N R+ + KLL +T+LR +G ++
Sbjct: 1918 -SERPSLVEGWKVEKIQEIYLEALKAYVDNRRRPKSGTIFAKLLSVLTELRTLGNQNSEM 2094
Query: 434 FLHMKV 439
+K+
Sbjct: 2095 CFSLKL 2112
>ref|NM_009473.1| Mus musculus nuclear receptor subfamily 1, group H, member 2
(Nr1h2), mRNA
Length = 1964
Score = 181 bits (460), Expect = 1e-43
Identities = 116/379 (30%), Positives = 182/379 (47%), Gaps = 21/379 (5%)
Frame = +1
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+
Sbjct: 445 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACR 621
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDD-------------------SKRLA 182
G C +D R +CQ CR +KC GM VL + S+ A
Sbjct: 622 GSGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQIRKKRIQKQQQQQPPPPSEPAA 801
Query: 183 XXXXXXXXXXXXXXXXLQKS-IGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFL 241
Q S G + T + +I+ + A + N + + +PK
Sbjct: 802 SSSGRPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRS--FSDQPKVT 975
Query: 242 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 301
P +G P + + F+HFT++ ++ +VDFAK++P F +L EDQI LLK
Sbjct: 976 PWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLK 1140
Query: 302 GCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNL 360
+EIM L A RY+ E+E +T + + GL V + IF+ ++ L
Sbjct: 1141ASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGL 1320
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P++LMK+
Sbjct: 1321DDAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKL 1500
Query: 421 TDLRMIGACHASRFLHMKV 439
LR + + H+ + +++
Sbjct: 1501VSLRTLSSVHSEQVFALRL 1557
>gb|U09419.1|MMU09419 Mus musculus retinoid X receptor interacting protein (RIP15) mRNA,
complete cds
Length = 1841
Score = 181 bits (460), Expect = 1e-43
Identities = 116/379 (30%), Positives = 182/379 (47%), Gaps = 21/379 (5%)
Frame = +2
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+
Sbjct: 305 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACR 481
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDD-------------------SKRLA 182
G C +D R +CQ CR +KC GM VL + S+ A
Sbjct: 482 GSGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQIRKKRIQKQQQQQPPPPSEPAA 661
Query: 183 XXXXXXXXXXXXXXXXLQKS-IGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFL 241
Q S G + T + +I+ + A + N + + +PK
Sbjct: 662 SSSGRPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRS--FSDQPKVT 835
Query: 242 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 301
P +G P + + F+HFT++ ++ +VDFAK++P F +L EDQI LLK
Sbjct: 836 PWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLK 1000
Query: 302 GCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNL 360
+EIM L A RY+ E+E +T + + GL V + IF+ ++ L
Sbjct: 1001ASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGL 1180
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P++LMK+
Sbjct: 1181DDAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKL 1360
Query: 421 TDLRMIGACHASRFLHMKV 439
LR + + H+ + +++
Sbjct: 1361VSLRTLSSVHSEQVFALRL 1417
>dbj|AB073782.1|AB073782 Paralichthys olivaceus fRAR-1 mRNA for retinoic acid receptor
unknown type, partial cds
Length = 860
Score = 180 bits (457), Expect = 2e-43
Identities = 103/309 (33%), Positives = 161/309 (51%)
Frame = +1
Query: 108 KATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYV 167
K++GYHY CEGCKGFFRR++QKN+ Y+C + C+I+K+TRN+CQ CR ++C
Sbjct: 1 KSSGYHYGVSACEGCKGFFRRSVQKNM--VYTCHRDRNCIINKITRNRCQYCRLQRCFAA 174
Query: 168 GMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVAT 227
GM+ + V +D R ++ +I E T E +++ + AH T
Sbjct: 175 GMSRESVRNDRIR-----------RKGKKEAVKMTIMETYELTSELGLIVEKICRAHTET 321
Query: 228 NAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPM 287
Q K+ I ++DL + F+++ T I +VV+FAK++P
Sbjct: 322 FPA---LCQLGKYTTNSSSDHRI-------QLDLGLWDKFSELATKCIIKVVEFAKRVPG 471
Query: 288 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDA 347
F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D
Sbjct: 472 FTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLTRTQIHNAGFGPLTDQ 651
Query: 348 IFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKH 407
+F L +DDTE LL A+ L+S DR L ++E Q+ L A + Y R+
Sbjct: 652 VFTFAGQLLPLEMDDTESGLLSAICLVSGDRQDLEEPSKVEVLQEPLLEALKIYSRKRRP 831
Query: 408 HVTHFWPKL 416
+ H +PK+
Sbjct: 832 SMPHMFPKM 858
>gb|U14534.1|HSU14534 Human orphan receptor mRNA, partial cds
Length = 1746
Score = 180 bits (457), Expect = 2e-43
Identities = 115/385 (29%), Positives = 183/385 (46%), Gaps = 27/385 (7%)
Frame = +1
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+
Sbjct: 184 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACR 360
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS----KRLAXXXXXXXXXXXXXXX 197
G C +D R +CQ+CR +KC GM VL + K++
Sbjct: 361 GGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPV 540
Query: 198 XLQKSIGHKPEP----------------------TDEEWELIKTVTEAHVATNAQGSHWK 235
Q S P T + +I+ + A + N + +
Sbjct: 541 GPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRS--FS 714
Query: 236 QKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCED 295
+PK P +G P + + F+HFT++ ++ +VDFAK++P F +L ED
Sbjct: 715 DQPKVTPWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGRED 879
Query: 296 QIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMS 354
QI LLK +EIM L A RY+ E+E +T + + GL V + IF+ +
Sbjct: 880 QIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRA 1059
Query: 355 LSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWP 414
+ LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P
Sbjct: 1060MRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFP 1239
Query: 415 KLLMKVTDLRMIGACHASRFLHMKV 439
++LMK+ LR + + H+ + +++
Sbjct: 1240RMLMKLVSLRTLSSVHSEQVFALRL 1314
>ref|NM_007121.1| Homo sapiens nuclear receptor subfamily 1, group H, member 2
(NR1H2), mRNA
Length = 2010
Score = 180 bits (457), Expect = 2e-43
Identities = 115/385 (29%), Positives = 183/385 (46%), Gaps = 27/385 (7%)
Frame = +2
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+
Sbjct: 446 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACR 622
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS----KRLAXXXXXXXXXXXXXXX 197
G C +D R +CQ+CR +KC GM VL + K++
Sbjct: 623 GGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPV 802
Query: 198 XLQKSIGHKPEP----------------------TDEEWELIKTVTEAHVATNAQGSHWK 235
Q S P T + +I+ + A + N + +
Sbjct: 803 GPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRS--FS 976
Query: 236 QKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCED 295
+PK P +G P + + F+HFT++ ++ +VDFAK++P F +L ED
Sbjct: 977 DQPKVTPWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGRED 1141
Query: 296 QIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMS 354
QI LLK +EIM L A RY+ E+E +T + + GL V + IF+ +
Sbjct: 1142QIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRA 1321
Query: 355 LSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWP 414
+ LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P
Sbjct: 1322MRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFP 1501
Query: 415 KLLMKVTDLRMIGACHASRFLHMKV 439
++LMK+ LR + + H+ + +++
Sbjct: 1502RMLMKLVSLRTLSSVHSEQVFALRL 1576
>gb|U07132.1|HSU07132 Human steroid hormone receptor Ner-I mRNA, complete cds
Length = 2010
Score = 180 bits (457), Expect = 2e-43
Identities = 115/385 (29%), Positives = 183/385 (46%), Gaps = 27/385 (7%)
Frame = +2
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+
Sbjct: 446 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACR 622
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS----KRLAXXXXXXXXXXXXXXX 197
G C +D R +CQ+CR +KC GM VL + K++
Sbjct: 623 GGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPV 802
Query: 198 XLQKSIGHKPEP----------------------TDEEWELIKTVTEAHVATNAQGSHWK 235
Q S P T + +I+ + A + N + +
Sbjct: 803 GPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRS--FS 976
Query: 236 QKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCED 295
+PK P +G P + + F+HFT++ ++ +VDFAK++P F +L ED
Sbjct: 977 DQPKVTPWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGRED 1141
Query: 296 QIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMS 354
QI LLK +EIM L A RY+ E+E +T + + GL V + IF+ +
Sbjct: 1142QIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRA 1321
Query: 355 LSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWP 414
+ LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P
Sbjct: 1322MRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFP 1501
Query: 415 KLLMKVTDLRMIGACHASRFLHMKV 439
++LMK+ LR + + H+ + +++
Sbjct: 1502RMLMKLVSLRTLSSVHSEQVFALRL 1576
>gb|BC007790.1|BC007790 Homo sapiens, nuclear receptor subfamily 1, group H, member 2,
clone MGC:14108 IMAGE:3636961, mRNA, complete cds
Length = 1934
Score = 180 bits (457), Expect = 2e-43
Identities = 115/385 (29%), Positives = 183/385 (46%), Gaps = 27/385 (7%)
Frame = +2
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+
Sbjct: 350 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACR 526
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS----KRLAXXXXXXXXXXXXXXX 197
G C +D R +CQ+CR +KC GM VL + K++
Sbjct: 527 GGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPV 706
Query: 198 XLQKSIGHKPEP----------------------TDEEWELIKTVTEAHVATNAQGSHWK 235
Q S P T + +I+ + A + N + +
Sbjct: 707 GPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRS--FS 880
Query: 236 QKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCED 295
+PK P +G P + + F+HFT++ ++ +VDFAK++P F +L ED
Sbjct: 881 DQPKVTPWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGRED 1045
Query: 296 QIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMS 354
QI LLK +EIM L A RY+ E+E +T + + GL V + IF+ +
Sbjct: 1046QIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRA 1225
Query: 355 LSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWP 414
+ LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P
Sbjct: 1226MRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFP 1405
Query: 415 KLLMKVTDLRMIGACHASRFLHMKV 439
++LMK+ LR + + H+ + +++
Sbjct: 1406RMLMKLVSLRTLSSVHSEQVFALRL 1480
>dbj|D86614.1|D86614 Polyandrocarpa misakiensis mRNA for retinoic acid receptor
homologue, partial cds
Length = 1987
Score = 180 bits (456), Expect = 3e-43
Identities = 106/319 (33%), Positives = 167/319 (52%), Gaps = 11/319 (3%)
Frame = +3
Query: 120 EGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK 179
EGCKGFFRR++QKN+ Y+C CVI+K TR++CQ CR +KC VGM + V +D
Sbjct: 3 EGCKGFFRRSVQKNMQ--YTCHRNKNCVINKSTRSRCQYCRLQKCFQVGMLKESVRNDRN 176
Query: 180 RLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVAT-----------N 228
+ ++ + T E ++ V +AH+ T
Sbjct: 177 KKRGKEKDGKTGDTSPSGQPEEIV-----VTPEIENIVSVVAKAHLDTFPKNEDLNKYNT 341
Query: 229 AQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMF 288
A+G K P D +P VD++ +S F+ + T +I ++V+FAK +P F
Sbjct: 342 AEGQGDKPLSPPTPSDASGSP-------PPVDVKLWSKFSDLSTKSIIKIVEFAKSVPGF 500
Query: 289 CELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAI 348
+L DQI LLK C+EI+ R RYD ++T++ + + + R QL+N G +++ +
Sbjct: 501 TDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLTLNRDQLRNCAFGPMTEQV 680
Query: 349 FDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHH 408
F SL+ F+LD TE LL A+ LM +DR L E++EK Q+ + + + ++ +
Sbjct: 681 FGFAKSLTPFDLDHTEGGLLCAICLMCADRTELEDPEKVEKPQEPLVEGLKWFARKKRPN 860
Query: 409 VTHFWPKLLMKVTDLRMIG 427
H +PK+LMK+ DLR IG
Sbjct: 861 KPHVFPKMLMKIADLRCIG 917
>gb|AF047467.1|AF047467 Sparus aurata thyroid hormone receptor alpha mRNA, partial cds
Length = 386
Score = 180 bits (456), Expect = 3e-43
Identities = 88/114 (77%), Positives = 96/114 (84%)
Frame = +1
Query: 201 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVD 260
+++ +PEP EWELI+ VTEAH TNAQGS WKQK KFL +DIGQ P+V EG KVD
Sbjct: 43 RTLQTRPEPNTAEWELIRMVTEAHRHTNAQGSSWKQKRKFLSDDIGQGPVVPTSEGDKVD 222
Query: 261 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 314
LEAFS FTKI+TPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAV
Sbjct: 223 LEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 384
>gb|U20389.1|RNU20389 Rattus norvegicus orphan nuclear receptor OR-1 mRNA, complete cds
Length = 1877
Score = 179 bits (455), Expect = 4e-43
Identities = 112/379 (29%), Positives = 178/379 (46%), Gaps = 21/379 (5%)
Frame = +2
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+
Sbjct: 365 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACR 541
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK--------------------RL 181
G C +D R +CQ CR +KC GM VL + +
Sbjct: 542 GSGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQIRKKKIQKQQQQQPPPPTEPAS 721
Query: 182 AXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFL 241
G + T + +I+ + A + N + + +PK
Sbjct: 722 GSSARPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRS--FSDQPKVT 895
Query: 242 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 301
P +G P + + F+HFT++ ++ +VDFAK++P F +L EDQI LLK
Sbjct: 896 PWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLK 1060
Query: 302 GCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNL 360
+EIM L A RY+ E+E +T + + GL V + IF+ ++ L
Sbjct: 1061ASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGL 1240
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P++LMK+
Sbjct: 1241DDAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKL 1420
Query: 421 TDLRMIGACHASRFLHMKV 439
LR + + H+ + +++
Sbjct: 1421VSLRTLSSVHSEQVFALRL 1477
>ref|XM_046419.3| Homo sapiens nuclear receptor subfamily 1, group H, member 2
(NR1H2), mRNA
Length = 1986
Score = 179 bits (454), Expect = 5e-43
Identities = 115/384 (29%), Positives = 182/384 (46%), Gaps = 26/384 (6%)
Frame = +2
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ + Y+C+
Sbjct: 425 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACR 601
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS---KRLAXXXXXXXXXXXXXXXX 198
G C +D R +CQ+CR +KC GM VL + K+
Sbjct: 602 GGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQESQSQSQSPVG 781
Query: 199 LQKSIGHKPEP----------------------TDEEWELIKTVTEAHVATNAQGSHWKQ 236
Q S P T + +I+ + A + N + +
Sbjct: 782 PQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRS--FSD 955
Query: 237 KPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQ 296
+PK P +G P + + F+HFT++ ++ +VDFAK++P F +L EDQ
Sbjct: 956 QPKVTPWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQ 1120
Query: 297 IILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSL 355
I LLK +EIM L A RY+ E+E +T + + GL V + IF+ ++
Sbjct: 1121IALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAM 1300
Query: 356 SSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPK 415
LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P+
Sbjct: 1301RRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPR 1480
Query: 416 LLMKVTDLRMIGACHASRFLHMKV 439
+LMK+ LR + + H+ + +++
Sbjct: 1481MLMKLVSLRTLSSVHSEQVFALRL 1552
>ref|NM_031626.1| Rattus norvegicus nuclear receptor subfamily 1, group H, member 2
(Nr1h2), mRNA
Length = 1959
Score = 178 bits (451), Expect = 1e-42
Identities = 111/379 (29%), Positives = 177/379 (46%), Gaps = 21/379 (5%)
Frame = +1
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+
Sbjct: 421 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACR 597
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK--------------------RL 181
G C +D R +CQ CR +KC GM VL + +
Sbjct: 598 GSGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQIRKKKIQKQQQQQPPPPTEPAS 777
Query: 182 AXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFL 241
G + T + +I+ + + N + + +PK
Sbjct: 778 GSSARPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAVQLQCNKRS--FSDQPKVT 951
Query: 242 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 301
P +G P + + F+HFT++ ++ +VDFAK++P F +L EDQI LLK
Sbjct: 952 PWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLK 1116
Query: 302 GCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNL 360
+EIM L A RY+ E+E +T + + GL V + IF+ ++ L
Sbjct: 1117ASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGL 1296
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P++LMK+
Sbjct: 1297DDAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKL 1476
Query: 421 TDLRMIGACHASRFLHMKV 439
LR + + H+ + +++
Sbjct: 1477VSLRTLSSVHSEQVFALRL 1533
>gb|U14533.1|RNU14533 Rattus norvegicus orphan receptor mRNA, complete cds
Length = 1959
Score = 178 bits (451), Expect = 1e-42
Identities = 111/379 (29%), Positives = 177/379 (46%), Gaps = 21/379 (5%)
Frame = +1
Query: 82 QTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCK 141
+ E K+ KG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+
Sbjct: 421 EPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACR 597
Query: 142 YEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK--------------------RL 181
G C +D R +CQ CR +KC GM VL + +
Sbjct: 598 GSGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQIRKKKIQKQQQQQPPPPTEPAS 777
Query: 182 AXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFL 241
G + T + +I+ + + N + + +PK
Sbjct: 778 GSSARPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAVQLQCNKRS--FSDQPKVT 951
Query: 242 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 301
P +G P + + F+HFT++ ++ +VDFAK++P F +L EDQI LLK
Sbjct: 952 PWPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLK 1116
Query: 302 GCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV-VSDAIFDLGMSLSSFNL 360
+EIM L A RY+ E+E +T + + GL V + IF+ ++ L
Sbjct: 1117ASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGL 1296
Query: 361 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 420
DD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P++LMK+
Sbjct: 1297DDAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKL 1476
Query: 421 TDLRMIGACHASRFLHMKV 439
LR + + H+ + +++
Sbjct: 1477VSLRTLSSVHSEQVFALRL 1533
>emb|AJ224341.1|CCAJ4341 Ceratitis capitata mRNA for ecdysone receptor (EcR gene)
Length = 3217
Score = 175 bits (443), Expect = 9e-42
Identities = 116/372 (31%), Positives = 177/372 (47%), Gaps = 30/372 (8%)
Frame = +1
Query: 98 KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQ 157
++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D R +CQ
Sbjct: 994 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYCCKFGRSCEMDMYMRRKCQ 1167
Query: 158 ECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEE-WEL 216
ECR KKC+ VGM + V+ +++ I K E E EL
Sbjct: 1168 ECRMKKCLAVGMRPECVVPENQCAMKRREKKAQKEKEKQTTGNSPIICKTESIKNEILEL 1347
Query: 217 IKTVTEAH---------VATNAQGSH----------------WKQKPKFLPEDIGQAPIV 251
+ +H + + S+ W Q P + I+
Sbjct: 1348 MNCEPPSHPTCPLLPDDIVAKCKASNIPPLTRNQLAVIYKLIWYQDGYEQPSEEDLKRIM 1527
Query: 252 NAPEGGKVDLE-AFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 310
+ P+ + + +F H T+I + +V+FAK LP F ++P EDQI LLK C E+M L
Sbjct: 1528 STPDENESPNDISFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMML 1707
Query: 311 RAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 370
R A RYD S+++ + R K G+ + + + S +D+ E ALL A
Sbjct: 1708 RMARRYDHNSDSIFFANNRSYTRDAYKMAGVADNIEDLLHFCRQMYSMKVDNVEYALLTA 1887
Query: 371 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHVTHFWPKLLMKVTDLRMIG 427
+++ SDRPGL + +E+ Q ++ YI R F+ KLL +T+LR +G
Sbjct: 1888 IVIF-SDRPGLEKAQLVEEIQSYYIDTLRVYIINRHCGDSMSLVFFAKLLSILTELRTLG 2064
Query: 428 ACHASRFLHMKV 439
+A +K+
Sbjct: 2065 NQNAEMCFSLKL 2100
>gb|U75355.1|LCU75355 Lucilia cuprina ecdysteroid receptor (EcR) mRNA, complete cds
Length = 3336
Score = 174 bits (442), Expect = 1e-41
Identities = 130/428 (30%), Positives = 198/428 (45%), Gaps = 34/428 (7%)
Frame = +3
Query: 46 NEQSSPHLIQTTWTSSIFHLDHDDVNDQSVSSAQTFQTEE-----KKCKGYIPSYLDKDE 100
N S H + +++ DD++ S S F T + K KG P ++E
Sbjct: 1473 NNSSMMHHTPRSESANSISSGRDDLSPSS--SLNGFSTSDASDVKKIKKGPAPRL--QEE 1640
Query: 101 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 160
LC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D R +CQECR
Sbjct: 1641 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYCCKFGHACEMDMYMRRKCQECR 1814
Query: 161 FKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTV 220
KKC+ VGM + V+ +++ +Q S+ E E +L+
Sbjct: 1815 LKKCLAVGMRPECVVPENQ---CAMKRREKKAQKEKDKIQTSV-CATEIKKEILDLMTCE 1982
Query: 221 TEAH---------VATNAQGSH----------------WKQKPKFLPEDIGQAPIVNAPE 255
+H + Q + W Q P + I+++P+
Sbjct: 1983 PPSHPTCPLLPEDILAKCQARNIPPLSYNQLAVIYKLIWYQDGYEQPSEEDLKRIMSSPD 2162
Query: 256 GGKVDLEA-FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 314
+ +A F H T+I + +V+FAK LP F ++P EDQI LLK C E+M LR A
Sbjct: 2163 ENESQHDASFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMAR 2342
Query: 315 RYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 374
RYD S+++ + R K G+ + + + S +D+ E ALL A+++
Sbjct: 2343 RYDHNSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMYSMKVDNVEYALLTAIVIF 2522
Query: 375 SSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHVTHFWPKLLMKVTDLRMIGACHA 431
SDRPGL E +E Q ++ YI R F+ KLL +T+LR +G +A
Sbjct: 2523 -SDRPGLEEAELVEAIQSYYIDTLRIYILNRHCGDPMSLVFFAKLLSILTELRTLGNQNA 2699
Query: 432 SRFLHMKV 439
+K+
Sbjct: 2700 EMCFSLKL 2723
>gb|AF325360.1|AF325360 Calliphora vicina ecdysone receptor (EcR) mRNA, complete cds
Length = 2355
Score = 171 bits (434), Expect = 1e-40
Identities = 113/368 (30%), Positives = 178/368 (47%), Gaps = 26/368 (7%)
Frame = +1
Query: 98 KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQ 157
++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D R +CQ
Sbjct: 934 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYCCKFGHACEMDMYMRRKCQ 1107
Query: 158 ECRFKKCIYVGMATDLVLDDS------KRLAXXXXXXXXXXXXXXXXLQKSI-------- 203
ECR +KC+ VGM + V+ ++ + ++K I
Sbjct: 1108 ECRLRKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKIQTSVCATEIKKEILDLMTCEP 1287
Query: 204 -GHKPEPTDEEWELIKTVTEAHVATNAQGS-------HWKQKPKFLPEDIGQAPIVNAPE 255
H P E +++ ++ ++ W Q P + I+++P+
Sbjct: 1288 PSHPTCPLLPE-DILAKCQARNIPPSSYNQLAVIYKLIWYQDGYEQPSEEDLKRIMSSPD 1464
Query: 256 GGKVDLE-AFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 314
+ + +F H T+I + +V+FAK LP F ++P EDQI LLK C E+M LR A
Sbjct: 1465 ENESQHDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMAR 1644
Query: 315 RYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 374
RYD S+++ + R K G+ + + + S +D+ E ALL A+++
Sbjct: 1645 RYDHNSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMYSMKVDNVEYALLTAIVIF 1824
Query: 375 SSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHVTHFWPKLLMKVTDLRMIGACHA 431
SDRPGL E +E Q ++ YI R F+ KLL +T+LR +G +A
Sbjct: 1825 -SDRPGLEEAELVEAIQSYYIDTLRIYILNRHCGDPMSLVFFAKLLSILTELRTLGNQNA 2001
Query: 432 SRFLHMKV 439
+K+
Sbjct: 2002 EMCFSLKL 2025
>gb|AF210733.1|AF210733 Aedes albopictus ecdysteroid receptor (EcR) mRNA, complete cds
Length = 4130
Score = 170 bits (431), Expect = 2e-40
Identities = 126/404 (31%), Positives = 190/404 (46%), Gaps = 32/404 (7%)
Frame = +3
Query: 68 DDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFR 127
+D++ S + T ++ KK K P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFR
Sbjct: 1989 EDLSPSSSLNGYTDGSDAKKQKKG-PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFR 2165
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVL------------ 175
R++ KN Y CK+ C +D R +CQECR KKC+ VGM + V+
Sbjct: 2166 RSVTKNA--VYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEK 2339
Query: 176 ------DDSKRLAXXXXXXXXXXXXXXXXLQK-------SIGHKPEPTDEEWEL--IKTV 220
D + A L K +I PE +E L I +
Sbjct: 2340 KAQKEKDKVQTNATVSTTNSTYRSEILPILMKCDPPPHQAIPLLPEKLLQENRLRNIPLL 2519
Query: 221 TEAHVATNAQGSHWKQKPKFLP--EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRV 278
T +A + W Q P ED+ + I + E F H T+I + +
Sbjct: 2520 TANQMAVIYK-LIWYQDGYEQPSEEDLKRIMIGSPNEEEDQHDVHFRHITEITILTVQLI 2696
Query: 279 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKN 338
V+FAK LP F ++P EDQI LLK C E+M LR A RYD ++++ + R +
Sbjct: 2697 VEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRM 2876
Query: 339 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAF 398
G+ + + + S +D+ E ALL A+++ SDRPGL E +E Q ++
Sbjct: 2877 AGMADTIEDLLHFCRQMFSLTVDNVEYALLTAIVIF-SDRPGLEQAELVEHIQSYYIDTL 3053
Query: 399 EHYINYR---KHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
YI R + + KLL +T+LR +G ++ +K+
Sbjct: 3054 RIYILNRHAGDPKCSVIFAKLLSILTELRTLGNQNSEMCFSLKL 3185
>gb|U15547.1|MMBTTHR6 Mus musculus beta 2 thyroid hormone receptor (TRbeta2) gene, exon 6
Length = 502
Score = 168 bits (426), Expect = 8e-40
Identities = 87/98 (88%), Positives = 90/98 (91%), Gaps = 7/98 (7%)
Frame = +3
Query: 286 PMFC-------ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKN 338
P+FC +LPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEMAV RGQLKN
Sbjct: 162 PLFCAYVPRSFQLPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKN 341
Query: 339 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 376
GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS
Sbjct: 342 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 455
>gb|U02021.1|AAU02021 Aedes aegypti ecdysteroid receptor mRNA, complete cds
Length = 4158
Score = 168 bits (426), Expect = 8e-40
Identities = 125/404 (30%), Positives = 189/404 (45%), Gaps = 32/404 (7%)
Frame = +3
Query: 68 DDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFR 127
+D++ S + T ++ KK K P+ ++ELC+VCGD+ +GYHY +TCEGCKGFFR
Sbjct: 1986 EDLSPSSSLNGYTDGSDAKKQKKG-PTPRQQEELCLVCGDRESGYHYNALTCEGCKGFFR 2162
Query: 128 RTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVL------------ 175
R++ KN Y CK+ C +D R +CQECR KKC+ VGM + V+
Sbjct: 2163 RSVTKNA--VYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEK 2336
Query: 176 ------DDSKRLAXXXXXXXXXXXXXXXXLQK-------SIGHKPEPTDEEWEL--IKTV 220
D + A L K +I PE +E L I +
Sbjct: 2337 KAQKEKDKVQTNATVSTTNSTYRSEILPILMKCDPPPHQAIPLLPEKLLQENRLRNIPLL 2516
Query: 221 TEAHVATNAQGSHWKQKPKFLP--EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRV 278
T +A + W Q P ED+ + I + E F H T+I + +
Sbjct: 2517 TANQMAVIYK-LIWYQDGYEQPSEEDLKRIMIGSPNEEEDQHDVHFRHITEITILTVQLI 2693
Query: 279 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKN 338
V+FAK LP F ++P EDQI LLK C E+M LR A RYD ++++ + R +
Sbjct: 2694 VEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRM 2873
Query: 339 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAF 398
G+ + + + S +D+ E ALL A+++ SDRPGL E +E Q ++
Sbjct: 2874 AGMADTIEDLLHFCRQMFSLTVDNVEYALLTAIVIF-SDRPGLEQAELVEHIQSYYIDTL 3050
Query: 399 EHYINYR---KHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
YI R + + KLL +T+LR +G ++ +K+
Sbjct: 3051 RIYILNRHAGDPKCSVIFAKLLSILTELRTLGNQNSEMCFSLKL 3182
>gb|AF405205.1|AF405205 Oncorhynchus mykiss thyroid hormone receptor-beta mRNA, partial cds
Length = 255
Score = 167 bits (423), Expect = 2e-39
Identities = 82/85 (96%), Positives = 83/85 (97%)
Frame = +1
Query: 259 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 318
VD+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP
Sbjct: 1 VDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 180
Query: 319 ESETLTLNGEMAVIRGQLKNGGLGV 343
ESETLTLNGEMAV RGQLKNGGLGV
Sbjct: 181 ESETLTLNGEMAVTRGQLKNGGLGV 255
>gb|L35266.1|BMOECDYREC Bombyx mori 20-hydroxy-ecdysone receptor mRNA, complete cds
Length = 2711
Score = 166 bits (420), Expect = 4e-39
Identities = 108/378 (28%), Positives = 172/378 (44%), Gaps = 31/378 (8%)
Frame = +2
Query: 93 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVT 152
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 776 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYICKFGHACEMDMYM 949
Query: 153 RNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKP----- 207
R +CQECR KKC+ VGM + V+ + + H P
Sbjct: 950 RRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKGILLPVSTTTVEDHMPPIMQC 1129
Query: 208 EPTDEEWELIKTVTEAHVATNAQGSH--------------------WKQKPKFLPEDIGQ 247
+P E I V +++ + W Q+ P D
Sbjct: 1130 DPPPPEAARIHEVVPRYLSEKLMEQNRQKNIPPLSANQKSLIARLVWYQEGYEQPSDEDL 1309
Query: 248 APIVNAPEGGKVDLEA---FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCC 304
+ + + D E+ F T++ + +V+FAK LP F ++ DQI LLK
Sbjct: 1310 KRVTQTWQSDEEDEESDLPFRQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLKASS 1489
Query: 305 MEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTE 364
E+M LR A RYD S+++ A R + GG+ V + + + + +D+
Sbjct: 1490 SEVMMLRVARRYDAASDSVLFANNKAYTRDNYRQGGMAYVIEDLLHFCRCMFAMGMDNVH 1669
Query: 365 VALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI---NYRKHHVTHFWPKLLMKVT 421
ALL A+++ SDRPGL +E+ Q +L YI N + ++L +T
Sbjct: 1670 FALLTAIVIF-SDRPGLEQPSLVEEIQRYYLNTLRIYIINQNSASSRCAVIYGRILSVLT 1846
Query: 422 DLRMIGACHASRFLHMKV 439
+LR +G +++ + +K+
Sbjct: 1847 ELRTLGTQNSNMCISLKL 1900
>emb|AJ002940.1|RNAJ2940 Rattus norvegicus mRNA for retinoic acid receptor alpha1, partial
Length = 908
Score = 165 bits (417), Expect = 9e-39
Identities = 101/292 (34%), Positives = 149/292 (50%), Gaps = 12/292 (4%)
Frame = +1
Query: 70 VNDQSVSSAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCK 123
V+ S S T +T+ + +PS L C VC DK++GYHY CEGCK
Sbjct: 97 VSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 276
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 183
GFFRR+IQKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 277 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--- 441
Query: 184 XXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQK 237
+K KPE T E ELI+ V +AH T Q
Sbjct: 442 ----------------KKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QL 564
Query: 238 PKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 297
K+ + + + +D++ + F+++ T I + V+FAK+LP F L DQI
Sbjct: 565 GKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 723
Query: 298 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIF 349
LLK C++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F
Sbjct: 724 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF 879
>dbj|D43943.1|BMOBMECRB1 Silkworm mRNA for ecdysone receptor, complete cds
Length = 2720
Score = 164 bits (416), Expect = 1e-38
Identities = 106/375 (28%), Positives = 169/375 (44%), Gaps = 28/375 (7%)
Frame = +1
Query: 93 PSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVT 152
P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN Y CK+ C +D
Sbjct: 790 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN--AVYICKFGHACEMDMYM 963
Query: 153 RNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKP----- 207
R +CQECR KKC+ VGM + V+ + + H P
Sbjct: 964 RRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKGILLPVSTTTVEDHMPPIMQC 1143
Query: 208 EPTDEEWELIKTVTEAHVATNAQGSH--------------------WKQKPKFLPEDIGQ 247
+P E I V +++ + W Q+ P D
Sbjct: 1144 DPPPPEAARIHEVVPRYLSEKLMEQNRQKNIPPLSANQKSLIARLVWYQEGYEQPSDEDL 1323
Query: 248 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 307
+ + E + F T++ + +V+FAK LP F ++ DQI LLK E+
Sbjct: 1324 KRVTQSDEEDEESDLPFRQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLKASSSEV 1503
Query: 308 MSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 367
M LR A RYD S+++ A R + G+ V + + + + +D+ AL
Sbjct: 1504 MMLRVARRYDAASDSVLFANNKAYTRDNYRKAGMAYVIEDLLHFCRCMFAMGMDNVHFAL 1683
Query: 368 LQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI---NYRKHHVTHFWPKLLMKVTDLR 424
L A+++ SDRPGL +E+ Q +L YI N + ++L +T+LR
Sbjct: 1684 LTAIVIF-SDRPGLEQPSLVEEIQRYYLNTLRIYIINQNSASSRCAVIYGRILSVLTELR 1860
Query: 425 MIGACHASRFLHMKV 439
+G +++ + +K+
Sbjct: 1861 TLGTQNSNMCISLKL 1905
>ref|XM_042458.2| Homo sapiens nuclear receptor subfamily 1, group I, member 3
(NR1I3), mRNA
Length = 1342
Score = 164 bits (415), Expect = 2e-38
Identities = 111/349 (31%), Positives = 164/349 (46%), Gaps = 8/349 (2%)
Frame = +2
Query: 98 KDEL--CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQ 155
+DEL CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K++ P +C + G C + K R
Sbjct: 182 EDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGP--TCPFAGSCEVSKTQRRH 355
Query: 156 CQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 215
C CR +KC+ GM D++L L K E+ E
Sbjct: 356 CPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSK----------EQEE 505
Query: 216 LIKTVTEAHVATNAQGSHWKQKPKFLPED---IGQAPIVN-APEGGKVDLEAFSHFTKII 271
LI+T+ AH T G+ ++Q +F P I P+ AP L +HF I
Sbjct: 506 LIRTLLGAH--TRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPV-----LPLVTHFADIN 664
Query: 272 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV 331
T + +V+ F K LP+F LP EDQI LLKG +EI + + +++
Sbjct: 665 TFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYT 844
Query: 332 IRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQ 391
I + G + +F +L L + E LL A+ L S DRPG+ + I++ Q
Sbjct: 845 IEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQ 1024
Query: 392 DSFLLAFEHYI--NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMK 438
+ L + YI R+ + KLL + +LR I + + H++
Sbjct: 1025EEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ 1171
>ref|NM_005122.1| Homo sapiens nuclear receptor subfamily 1, group I, member 3
(NR1I3), mRNA
Length = 1450
Score = 164 bits (415), Expect = 2e-38
Identities = 111/349 (31%), Positives = 164/349 (46%), Gaps = 8/349 (2%)
Frame = +3
Query: 98 KDEL--CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQ 155
+DEL CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K++ P +C + G C + K R
Sbjct: 285 EDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGP--TCPFAGSCEVSKTQRRH 458
Query: 156 CQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 215
C CR +KC+ GM D++L L K E+ E
Sbjct: 459 CPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSK----------EQEE 608
Query: 216 LIKTVTEAHVATNAQGSHWKQKPKFLPED---IGQAPIVN-APEGGKVDLEAFSHFTKII 271
LI+T+ AH T G+ ++Q +F P I P+ AP L +HF I
Sbjct: 609 LIRTLLGAH--TRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPV-----LPLVTHFADIN 767
Query: 272 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV 331
T + +V+ F K LP+F LP EDQI LLKG +EI + + +++
Sbjct: 768 TFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYT 947
Query: 332 IRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQ 391
I + G + +F +L L + E LL A+ L S DRPG+ + I++ Q
Sbjct: 948 IEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQ 1127
Query: 392 DSFLLAFEHYI--NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMK 438
+ L + YI R+ + KLL + +LR I + + H++
Sbjct: 1128EEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ 1274
>emb|Z30425.1|HSONHORE H.sapiens mRNA for orphan nuclear hormone receptor
Length = 1450
Score = 164 bits (415), Expect = 2e-38
Identities = 111/349 (31%), Positives = 164/349 (46%), Gaps = 8/349 (2%)
Frame = +3
Query: 98 KDEL--CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQ 155
+DEL CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K++ P +C + G C + K R
Sbjct: 285 EDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGP--TCPFAGSCEVSKTQRRH 458
Query: 156 CQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 215
C CR +KC+ GM D++L L K E+ E
Sbjct: 459 CPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSK----------EQEE 608
Query: 216 LIKTVTEAHVATNAQGSHWKQKPKFLPED---IGQAPIVN-APEGGKVDLEAFSHFTKII 271
LI+T+ AH T G+ ++Q +F P I P+ AP L +HF I
Sbjct: 609 LIRTLLGAH--TRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPV-----LPLVTHFADIN 767
Query: 272 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV 331
T + +V+ F K LP+F LP EDQI LLKG +EI + + +++
Sbjct: 768 TFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYT 947
Query: 332 IRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQ 391
I + G + +F +L L + E LL A+ L S DRPG+ + I++ Q
Sbjct: 948 IEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQ 1127
Query: 392 DSFLLAFEHYI--NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMK 438
+ L + YI R+ + KLL + +LR I + + H++
Sbjct: 1128EEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ 1274
>gb|AF092946.1|AF092946 Metapenaeus ensis nuclear hormone receptor E75 (E75) mRNA, complete
cds
Length = 3538
Score = 164 bits (414), Expect = 2e-38
Identities = 111/356 (31%), Positives = 177/356 (49%), Gaps = 17/356 (4%)
Frame = +2
Query: 101 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 160
LC VCGDKA+G+HY +CEGCKGFFRR+IQ+ + C +C I ++ RN+CQ CR
Sbjct: 467 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYR-PCTKNQQCSILRINRNRCQYCR 643
Query: 161 FKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTV 220
KKCI VGM+ D V ++++ + E ++ + +
Sbjct: 644 LKKCIAVGMSRDAVRFGRVPKREKAKILAAMQSVNAKSQERAVLAELE---DDTRVTAAI 814
Query: 221 TEAHVAT------------NAQGSH--WKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSH 266
AH+ T +H + Q P +L + P+ P G+ +L
Sbjct: 815 IRAHMDTCDFTRDKVAPMLQQARTHPSYTQCPPYLACPLNPRPV---PLHGQQEL--VQD 979
Query: 267 FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESET-LTL 325
F++ + PAI VV+FAK+LP F +LP EDQ+ LLK E++ +R A +D + L L
Sbjct: 980 FSEALLPAIRGVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLLVRLAGMFDARTNAMLCL 1159
Query: 326 NGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 385
NG++ + + D++FD ++S L+D E+AL AV++++ DRPGL E
Sbjct: 1160NGQLVRREALHTSVNARFLMDSMFDFAERVNSLALNDAELALFCAVVVLAPDRPGLRNAE 1339
Query: 386 RIEKYQDSFLLAFEHYINYRKHHV--THFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+E+ + + ++ KHH + LL K+ DLR + H+ + L K+
Sbjct: 1340LVERVHRRLVNCLQAVVS--KHHPENPNLQRDLLSKIPDLRTLNTLHSEKLLKYKM 1501
>gb|AF092030.2|AF092030 Choristoneura fumiferana ecdysone receptor isoform A (EcR) mRNA,
complete cds
Length = 6852
Score = 162 bits (409), Expect = 8e-38
Identities = 115/399 (28%), Positives = 188/399 (46%), Gaps = 33/399 (8%)
Frame = +3
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKN 133
S++ T ++ KG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN
Sbjct: 693 SINGCSTDGEARRQKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN 866
Query: 134 LHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS--------KRLAXXX 185
Y CK+ C +D R +CQECR KKC+ VGM + V+ ++ K+
Sbjct: 867 --AVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPETQCAMKRKEKKAQKEK 1040
Query: 186 XXXXXXXXXXXXXLQKSIGHKPEPTDEE--WELI-KTVTEAHVATNAQGS---------- 232
+ + +P P + E++ + +++ + TN Q +
Sbjct: 1041 DKLPVSTTTVDDHMPPIMQCEPPPPEAARIHEVVPRFLSDKLLETNRQKNIPQLTANQQF 1220
Query: 233 -----HWKQKPKFLPEDIGQAPIV----NAPEGGKVDLEAFSHFTKIITPAITRVVDFAK 283
W Q P D I A + + F T++ + +V+FAK
Sbjct: 1221 LIARLIWYQDGYEQPSDEDLKRITQTWQQADDENEESDTPFRQITEMTILTVQLIVEFAK 1400
Query: 284 KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV 343
LP F ++ DQI LLK C E+M LR A RYD S+++ A R + G+
Sbjct: 1401 GLPGFAKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTRDNYRKAGMAY 1580
Query: 344 VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYIN 403
V + + + S LD+ ALL AV++ SDRPGL + +E+ Q +L YI
Sbjct: 1581 VIEDLLHFCRCMYSMALDNIHYALLTAVVIF-SDRPGLEQPQLVEEIQRYYLNTLRIYIL 1757
Query: 404 YR---KHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ + + K+L +++LR +G +++ + +K+
Sbjct: 1758 NQLSGSARSSVIYGKILSILSELRTLGMQNSNMCISLKL 1874
>gb|U29531.2|CFU29531 Choristoneura fumiferana ecdysteroid receptor EcR-B mRNA, complete
cds
Length = 3962
Score = 162 bits (409), Expect = 8e-38
Identities = 115/399 (28%), Positives = 188/399 (46%), Gaps = 33/399 (8%)
Frame = +1
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKN 133
S++ T ++ KG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN
Sbjct: 583 SINGCSTDGEARRQKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN 756
Query: 134 LHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS--------KRLAXXX 185
Y CK+ C +D R +CQECR KKC+ VGM + V+ ++ K+
Sbjct: 757 --AVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPETQCAMKRKEKKAQKEK 930
Query: 186 XXXXXXXXXXXXXLQKSIGHKPEPTDEE--WELI-KTVTEAHVATNAQGS---------- 232
+ + +P P + E++ + +++ + TN Q +
Sbjct: 931 DKLPVSTTTVDDHMPPIMQCEPPPPEAARIHEVVPRFLSDKLLETNRQKNIPQLTANQQF 1110
Query: 233 -----HWKQKPKFLPEDIGQAPIV----NAPEGGKVDLEAFSHFTKIITPAITRVVDFAK 283
W Q P D I A + + F T++ + +V+FAK
Sbjct: 1111LIARLIWYQDGYEQPSDEDLKRITQTWQQADDENEESDTPFRQITEMTILTVQLIVEFAK 1290
Query: 284 KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGV 343
LP F ++ DQI LLK C E+M LR A RYD S+++ A R + G+
Sbjct: 1291GLPGFAKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTRDNYRKAGMAY 1470
Query: 344 VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYIN 403
V + + + S LD+ ALL AV++ SDRPGL + +E+ Q +L YI
Sbjct: 1471VIEDLLHFCRCMYSMALDNIHYALLTAVVIF-SDRPGLEQPQLVEEIQRYYLNTLRIYIL 1647
Query: 404 YR---KHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ + + K+L +++LR +G +++ + +K+
Sbjct: 1648NQLSGSARSSVIYGKILSILSELRTLGMQNSNMCISLKL 1764
>ref|NM_005123.1| Homo sapiens nuclear receptor subfamily 1, group H, member 4 (NR1H4),
mRNA
Length = 2218
Score = 161 bits (407), Expect = 1e-37
Identities = 112/355 (31%), Positives = 167/355 (46%), Gaps = 14/355 (3%)
Frame = +3
Query: 99 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 158
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 723 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 896
Query: 159 CRFKKCIYVGMATDLVLDD----SKRL---------AXXXXXXXXXXXXXXXXLQKSIGH 205
CR +KC +GM + +L + SKRL KS
Sbjct: 897 CRLRKCKEMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKSCRE 1076
Query: 206 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFS 265
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 1077 KTELTPDQQTLLHFIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENFL 1208
Query: 266 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 325
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 1209 ILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP---- 1376
Query: 326 NGEMAVIRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACV 384
+G ++ +++N G+ +F S+ + E ALL A++++S DR +
Sbjct: 1377 SGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDR 1556
Query: 385 ERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
E +EK Q+ L + + + LL ++T+LR HA + +V
Sbjct: 1557 EAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRV 1721
>gb|U68233.1|HSU68233 Human farnesol receptor HRR-1 (HRR-1) mRNA, complete cds
Length = 2218
Score = 161 bits (407), Expect = 1e-37
Identities = 112/355 (31%), Positives = 167/355 (46%), Gaps = 14/355 (3%)
Frame = +3
Query: 99 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 158
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 723 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 896
Query: 159 CRFKKCIYVGMATDLVLDD----SKRL---------AXXXXXXXXXXXXXXXXLQKSIGH 205
CR +KC +GM + +L + SKRL KS
Sbjct: 897 CRLRKCKEMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKSCRE 1076
Query: 206 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFS 265
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 1077 KTELTPDQQTLLHFIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENFL 1208
Query: 266 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 325
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 1209 ILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP---- 1376
Query: 326 NGEMAVIRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACV 384
+G ++ +++N G+ +F S+ + E ALL A++++S DR +
Sbjct: 1377 SGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDR 1556
Query: 385 ERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
E +EK Q+ L + + + LL ++T+LR HA + +V
Sbjct: 1557 EAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRV 1721
>emb|AJ002941.1|RNAJ2941 Rattus norvegicus mRNA for retinoic acid receptor alpha2, partial
Length = 924
Score = 161 bits (407), Expect = 1e-37
Identities = 98/285 (34%), Positives = 146/285 (50%), Gaps = 12/285 (4%)
Frame = +2
Query: 77 SAQTFQTEEKKCKGYIPSYLDKDEL------CVVCGDKATGYHYRCITCEGCKGFFRRTI 130
S + +T+ + +PS L C VC DK++GYHY CEGCKGFFRR+I
Sbjct: 134 SNHSIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSI 313
Query: 131 QKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXX 190
QKN+ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 314 QKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK---------- 457
Query: 191 XXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPED 244
+K KPE T E ELI+ V +AH T Q K+ +
Sbjct: 458 ---------KKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALC---QLGKYTTNN 601
Query: 245 IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCC 304
+ + +D++ + F+++ T I + V+FAK+LP F L DQI LLK C
Sbjct: 602 SSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAAC 760
Query: 305 MEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIF 349
++I+ LR RY PE +T+T + + + R Q+ N G G ++D +F
Sbjct: 761 LDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF 895
>emb|AJ009937.1|HSAJ9937 Homo sapiens mRNA for nuclear hormone receptor PRR2
Length = 4337
Score = 159 bits (402), Expect = 5e-37
Identities = 105/350 (30%), Positives = 166/350 (47%), Gaps = 11/350 (3%)
Frame = +1
Query: 100 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY-EGKCVIDKVTRNQCQE 158
++C VCGDKATGYH+ +TCEGCKGFFRR +++N C + +G C I + TR QCQ
Sbjct: 1954 QICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNAR--LRCPFRKGACEITRKTRRQCQA 2127
Query: 159 CRFKKCIYVGMATDLVLDD---SKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 215
CR +KC+ GM ++++ D +R A +Q T+E+
Sbjct: 2128 CRLRKCLESGMKNEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGL-------TEEQRM 2286
Query: 216 LIKTVTEAHVAT-NAQGSHWKQKPKFLPEDIGQAPIVN----APEGGKVDLEAFSHFTKI 270
+I+ + +A + T + SH+K L + N A GGK H +
Sbjct: 2287 MIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADM 2466
Query: 271 ITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMA 330
T ++ FAK + F +LP EDQI LLKG E+ LR ++ E+ T G ++
Sbjct: 2467 STYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC-GRLS 2643
Query: 331 VIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 390
G ++ + + L L + E L+QA+ L S DRPG+ +++
Sbjct: 2644 YCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQL 2823
Query: 391 QDSFLLAFEHYINYRKHHVTH--FWPKLLMKVTDLRMIGACHASRFLHMK 438
Q+ F + + YI + H + K++ +T+LR I A H R L ++
Sbjct: 2824 QEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQ 2973
>gb|U19812.1|MSU19812 Manduca sexta ecdysone receptor homologue (MsEcR) gene, complete cds
Length = 2840
Score = 159 bits (401), Expect = 7e-37
Identities = 115/401 (28%), Positives = 186/401 (45%), Gaps = 35/401 (8%)
Frame = +1
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKN 133
S++ T ++ KG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN
Sbjct: 721 SINGCSTDGEPRRQKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN 894
Query: 134 LHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS--------KRLAXXX 185
Y CK+ C +D R +CQECR KKC+ VGM + V+ +S K
Sbjct: 895 --AVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPESTCKNKRREKEAQREK 1068
Query: 186 XXXXXXXXXXXXXLQKSIGHKPEPTDE----------------EWELIKTVT--EAHVAT 227
+ + P P + E +K VT A+ +
Sbjct: 1069 DKLPVSTTTVDDHMPAIMQCDPPPPEAARIHEVVPRFLTEKLMEQNRLKNVTPLSANQKS 1248
Query: 228 NAQGSHWKQKPKFLPED-----IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFA 282
W Q+ P + + Q + E + D+ F T++ + +V+FA
Sbjct: 1249 LIARLVWYQEGYEQPSEEDLKRVTQTWQLEEEEEEETDM-PFRQITEMTILTVQLIVEFA 1425
Query: 283 KKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLG 342
K LP F ++ DQI LLK E+M LR A RYD ++++ A R + G+
Sbjct: 1426 KGLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMS 1605
Query: 343 VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI 402
V + + + S ++D+ ALL A+++ SDRPGL +E+ Q +L YI
Sbjct: 1606 YVIEDLLHFCRCMYSMSMDNVHYALLTAIVIF-SDRPGLEQPLLVEEIQRYYLKTLRVYI 1782
Query: 403 NYRKHHVTH----FWPKLLMKVTDLRMIGACHASRFLHMKV 439
+H + + K+L +T+LR +G +++ + +K+
Sbjct: 1783 -LNQHSASPRCAVLFGKILGVLTELRTLGTQNSNMCISLKL 1902
>ref|NM_033013.1| Homo sapiens nuclear receptor subfamily 1, group I, member 2 (NR1I2),
transcript variant 3, mRNA
Length = 4335
Score = 159 bits (401), Expect = 7e-37
Identities = 105/350 (30%), Positives = 166/350 (47%), Gaps = 11/350 (3%)
Frame = +1
Query: 100 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY-EGKCVIDKVTRNQCQE 158
++C VCGDKATGYH+ +TCEGCKGFFRR +++N C + +G C I + TR QCQ
Sbjct: 1954 QICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNAR--LRCPFRKGACEITRKTRRQCQA 2127
Query: 159 CRFKKCIYVGMATDLVLDD---SKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 215
CR +KC+ GM ++++ D +R A +Q T+E+
Sbjct: 2128 CRLRKCLESGMKKEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGL-------TEEQRM 2286
Query: 216 LIKTVTEAHVAT-NAQGSHWKQKPKFLPEDIGQAPIVN----APEGGKVDLEAFSHFTKI 270
+I+ + +A + T + SH+K L + N A GGK H +
Sbjct: 2287 MIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADM 2466
Query: 271 ITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMA 330
T ++ FAK + F +LP EDQI LLKG E+ LR ++ E+ T G ++
Sbjct: 2467 STYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC-GRLS 2643
Query: 331 VIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 390
G ++ + + L L + E L+QA+ L S DRPG+ +++
Sbjct: 2644 YCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQL 2823
Query: 391 QDSFLLAFEHYINYRKHHVTH--FWPKLLMKVTDLRMIGACHASRFLHMK 438
Q+ F + + YI + H + K++ +T+LR I A H R L ++
Sbjct: 2824 QEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQ 2973
>gb|AF047893.1|SSTHRB2 Salmo salar thyroid hormone receptor-beta (TR-beta) gene, exon 5
Length = 259
Score = 158 bits (400), Expect = 9e-37
Identities = 79/86 (91%), Positives = 84/86 (96%)
Frame = +1
Query: 291 LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFD 350
LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV RGQLKNGGLGVVSDAIFD
Sbjct: 1 LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFD 180
Query: 351 LGMSLSSFNLDDTEVALLQAVLLMSS 376
LG+SLSSF+LDD+EVALLQ V+L+SS
Sbjct: 181 LGLSLSSFHLDDSEVALLQTVILLSS 258
>emb|Y09009.1|HVECR H.virescens mRNA for ecdysteroid receptor
Length = 2745
Score = 157 bits (398), Expect = 1e-36
Identities = 113/400 (28%), Positives = 182/400 (45%), Gaps = 34/400 (8%)
Frame = +3
Query: 74 SVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKN 133
SV+ T ++ KG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ KN
Sbjct: 633 SVNGCSTDGEARRQKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKN 806
Query: 134 LHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS-------KRLAXXXX 186
Y CK+ C +D R +CQECR KKC+ VGM + V+ ++ ++ A
Sbjct: 807 A--VYICKFGHACEMDIYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQREK 980
Query: 187 XXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVA-------------------T 227
I P E +++ V V T
Sbjct: 981 DKLPVSTTTVDDHMPPIMQCDPPPPEAARILECVQHEVVPRFLNEKLMEQNRLKNVPPLT 1160
Query: 228 NAQGSH-----WKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFA 282
Q S W Q+ P + + + E + F T++ + +V+FA
Sbjct: 1161 ANQKSLIARLVWYQEGYEQPSEEDLKRVTQSDEDDEDSDMPFRQITEMTILTVQLIVEFA 1340
Query: 283 KKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLG 342
K LP F ++ DQI LLK C E+M LR A RYD ++++ A R + G+
Sbjct: 1341 KGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMA 1520
Query: 343 VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL---ACVERIEKYQDSFLLAFE 399
V + + + S +D+ ALL A+++ SDRPGL VE I++Y + L +
Sbjct: 1521 YVIEDLLHFCRCMYSMMMDNVHYALLTAIVIF-SDRPGLEQPLLVEEIQRYYLNTLRVYI 1697
Query: 400 HYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
N + ++L +T++R +G +++ + +K+
Sbjct: 1698 LNQNSASPRGAVIFGEILGILTEIRTLGMQNSNMCISLKL 1817
>emb|X75163.1|XLRNAONST X.laevis mRNA for orphan nuclear receptor of steroid/thyroid
superfamily
Length = 1638
Score = 157 bits (398), Expect = 1e-36
Identities = 99/348 (28%), Positives = 158/348 (44%), Gaps = 10/348 (2%)
Frame = +2
Query: 100 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQEC 159
++C CGD+ATGYH+ +TCEGCKGFFRR +++NL SC ++ CVI+K R CQ C
Sbjct: 347 KICRACGDRATGYHFNAMTCEGCKGFFRRAVKRNLR--LSCPFQNSCVINKSNRRHCQAC 520
Query: 160 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKT 219
R KKC+ +GM +L++ D+ +K K PT L T
Sbjct: 521 RLKKCLDIGMRKELIMSDA-----------AVEQRRALIKRKHKLTKLPPTPPGASL--T 661
Query: 220 VTEAHVATNAQGSHWKQ-------KPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIIT 272
+ H T G+H K F P P H + ++T
Sbjct: 662 PEQQHFLTQLVGAHTKTFDFNFTFSKNFRPIRRSSDPTQEPQATSSEAFLMLPHISDLVT 841
Query: 273 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVI 332
I ++ FAK LP F L EDQI LLKG E+ +R ++ ++ T
Sbjct: 842 YMIKGIISFAKMLPYFKSLDIEDQIALLKGSVAEVSVIRFNTVFNSDTNTWECGPFTYDT 1021
Query: 333 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQD 392
G + + + + + NL E A++ A+ + +SDRPG+ E+I+K Q+
Sbjct: 1022EDMFLAGFRQLFLEPLVRIHRMMRKLNLQSEEYAMMAALSIFASDRPGVCDWEKIQKLQE 1201
Query: 393 SFLLAFEHYINYRKHHVTH---FWPKLLMKVTDLRMIGACHASRFLHM 437
L + +I+ ++ +PK++ +T+LR + H+ + L +
Sbjct: 1202HIALTLKDFIDSQRPPSPQNRLLYPKIMECLTELRTVNDIHSKQLLEI 1345
>gb|AF305201.1|AF305201 Xenopus laevis orphan nuclear receptor BXR-beta mRNA, complete cds
Length = 1790
Score = 157 bits (398), Expect = 1e-36
Identities = 102/348 (29%), Positives = 164/348 (46%), Gaps = 10/348 (2%)
Frame = +1
Query: 100 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQEC 159
++C CGD+ATGYH+ +TCEGCKGFFRR +++NL SC ++ CVI+K R CQ C
Sbjct: 376 KICRACGDRATGYHFNAMTCEGCKGFFRRAMKRNLR--LSCPFQNSCVINKNNRRHCQAC 549
Query: 160 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKT 219
R KKC+ +GM +L++ D L T E+ I
Sbjct: 550 RLKKCLDIGMRKELIMSDE----AVEQRRALIKRKQNLSLSPPTPPGASLTPEQQHFITE 717
Query: 220 VTEAHVAT-NAQGSHWKQ-KPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITR 277
+ EAH T + + +K +P D Q P + E H + + T +
Sbjct: 718 LVEAHTKTFDFNFTFFKNFRPIRRSPDPTQDPQATSSEA----FLMLPHISDLFTYMLKG 885
Query: 278 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESET-----LTLNGEMAVI 332
V+ FAK LP F L EDQI LLKG +E+ +R ++P++ T T N + +
Sbjct: 886 VISFAKMLPYFRSLAIEDQIALLKGSVLEVCVIRFNRMFNPKTNTWECGAFTYNADDMTM 1065
Query: 333 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQD 392
G + + + + ++ NL+ AL+ + L SSDRPG++ E+I+ Q+
Sbjct: 1066AGFSQQ-----FLEPLLRIHCMMTKLNLESEAYALMATMALFSSDRPGVSDCEKIQNLQE 1230
Query: 393 SFLLAFEHYINYRKHHVTH---FWPKLLMKVTDLRMIGACHASRFLHM 437
L + +I + +PK++ +T+LR I H+ + + +
Sbjct: 1231HIALMLKAFIESHRPPSPQNRLLYPKIMECLTELRTINDIHSKQLMEI 1374
>gb|AF384555.1|AF384555 Homo sapiens farnesol receptor (NR1H4) mRNA, complete cds,
alternatively spliced
Length = 1431
Score = 157 bits (397), Expect = 2e-36
Identities = 112/360 (31%), Positives = 167/360 (46%), Gaps = 19/360 (5%)
Frame = +1
Query: 99 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 158
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 370 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 543
Query: 159 CRFKK---------CIYVGMATDLVLDDSKRL---------AXXXXXXXXXXXXXXXXLQ 200
CR +K C+Y G+ T++ SKRL
Sbjct: 544 CRLRKCKEMGMLAECMYTGLLTEIQC-KSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTT 720
Query: 201 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVD 260
KS K E T ++ L+ + +++ N Q + K L E+
Sbjct: 721 KSCREKTELTPDQQTLLHFIMDSY---NKQRMPQEITNKILKEEFSAE------------ 855
Query: 261 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 320
E F T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 856 -ENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKL 1032
Query: 321 ETLTLNGEMAVIRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRP 379
+G ++ +++N G+ +F S+ + E ALL A++++S DR
Sbjct: 1033P----SGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQ 1200
Query: 380 GLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
+ E +EK Q+ L + + + LL ++T+LR HA + +V
Sbjct: 1201YIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRV 1380
>gb|AF164512.1|AF164512 Danio rerio vitamin D receptor (vdr) mRNA, complete cds
Length = 1503
Score = 156 bits (395), Expect = 3e-36
Identities = 103/380 (27%), Positives = 168/380 (44%), Gaps = 46/380 (12%)
Frame = +1
Query: 101 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 160
+C VCGDKATG+H+ +TCEGCKGFFRR++++ S++C + G C I K R CQ CR
Sbjct: 187 ICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRK--ASFTCPFNGNCTITKDNRRHCQACR 360
Query: 161 FKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTV 220
K+CI +GM + +L D + KP +DE+ ++I ++
Sbjct: 361 LKRCIDIGMMKEFILTDEEVQRKKDLIMKRKEEEAARE-----ARKPRLSDEQMQIINSL 525
Query: 221 TEAHVAT----------------------------------NAQGSHWKQKPKFLPEDIG 246
EAH T +A + P+ + +
Sbjct: 526 VEAHHKTYDDSYSDFVRFRPPVREGPVTRSASRAASLHSLSDASSDSFNHSPESVDTKLN 705
Query: 247 QAPIV------NAPEGGKVD----LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQ 296
+ ++ +P+ + D L H +++ +I +V+ FAK +P F +L EDQ
Sbjct: 706 FSNLLMMYQDSGSPDSSEEDQQSRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQ 885
Query: 297 IILLKGCCMEIMSLRAAVRYDPESETLTLNGE--MAVIRGQLKNGGLGVVSDAIFDLGMS 354
I LLK +EI+ LR+ + E + + G I K G + + + +
Sbjct: 886 IALLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVG 1065
Query: 355 LSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWP 414
L L + E LL A+ L+S DRPG+ RIE QD + YI + +
Sbjct: 1066LKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYA 1245
Query: 415 KLLMKVTDLRMIGACHASRF 434
K++ K+ DLR + H+ ++
Sbjct: 1246KMIQKLADLRSLNEEHSKQY 1305
>emb|AL590145.2|AL590145 Zebrafish DNA sequence from clone RP71-18K17, complete sequence [Danio
rerio]
Length = 135699
Score = 156 bits (395), Expect = 3e-36
Identities = 80/87 (91%), Positives = 83/87 (94%)
Frame = +1
Query: 290 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIF 349
+LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEMAV R QLKNGGLGVVSDAIF
Sbjct: 100048 QLPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVSREQLKNGGLGVVSDAIF 100227
Query: 350 DLGMSLSSFNLDDTEVALLQAVLLMSS 376
DLG SLS FNLDD+EVALLQAVLLMSS
Sbjct: 100228 DLGKSLSQFNLDDSEVALLQAVLLMSS 100308
Score = 116 bits (290), Expect = 5e-24
Identities = 51/64 (79%), Positives = 60/64 (93%)
Frame = +3
Query: 376 SDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 435
+DR GL CVE+IEK Q+ +LLAFEHYIN+RKH+++HFWPKLLMKVT+LRMIGACHASRFL
Sbjct: 102312 TDRSGLTCVEKIEKCQEMYLLAFEHYINHRKHNISHFWPKLLMKVTNLRMIGACHASRFL 102491
Query: 436 HMKV 439
HMKV
Sbjct: 102492 HMKV 102503
Score = 97.4 bits (241), Expect = 2e-18
Identities = 45/67 (67%), Positives = 51/67 (75%), Gaps = 1/67 (1%)
Frame = +1
Query: 107 DKATGYHYRCITCEGC-KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCI 165
DK+ H C C +GFFRRTIQKNLHPSYSCKY+ C+IDK+TRNQCQ CRF+KCI
Sbjct: 89683 DKSVFNH*AAFFCLHCTQGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFRKCI 89862
Query: 166 YVGMATD 172
VGMA D
Sbjct: 89863 SVGMAMD 89883
Score = 77.8 bits (190), Expect = 2e-12
Identities = 31/34 (91%), Positives = 33/34 (96%)
Frame = +3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 123
GY+PSYL+KDE CVVCGDKATGYHYRCITCEGCK
Sbjct: 89547 GYVPSYLEKDEPCVVCGDKATGYHYRCITCEGCK 89648
Score = 75.9 bits (185), Expect = 7e-12
Identities = 39/52 (75%), Positives = 43/52 (82%)
Frame = +2
Query: 240 FLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 291
F PEDIGQ+P + + KVDLEAFS FTKIITPAITRVVDFAKKLPMF E+
Sbjct: 97034 FQPEDIGQSPAPTS-DNDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEV 97186
Score = 75.1 bits (183), Expect = 1e-11
Identities = 37/73 (50%), Positives = 46/73 (62%)
Frame = +1
Query: 173 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 232
+VLDDSKR+A + K++ ++PEPT EWELI+ VTEAH TNAQG
Sbjct: 92656 VVLDDSKRVAKRRLIEENREKRKKEEIVKTLHNRPEPTVSEWELIRMVTEAHRHTNAQGP 92835
Query: 233 HWKQKPKFLPEDI 245
HWKQK KFL D+
Sbjct: 92836 HWKQKRKFLVSDL 92874
Score = 39.3 bits (90), Expect = 0.77
Identities = 28/60 (46%), Positives = 36/60 (59%), Gaps = 1/60 (1%)
Frame = +1
Query: 321 ETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMS-SDRP 379
ETL L+ EM V QLKN LGVV +AIFDLG S + L+ + + A +L S D+P
Sbjct: 101287 ETLNLSREMGVS*EQLKNERLGVVFNAIFDLGKSPNQ-KLEVVQNLMELATMLFSVQDKP 101463
>ref|NM_009108.1| Mus musculus nuclear receptor subfamily 1, group H, member 4
(Nr1h4), mRNA
Length = 1798
Score = 155 bits (393), Expect = 6e-36
Identities = 113/357 (31%), Positives = 167/357 (46%), Gaps = 16/357 (4%)
Frame = +3
Query: 99 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 158
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 414 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 587
Query: 159 CRFKKCIYVGMATDLVLDD----SKRL----------AXXXXXXXXXXXXXXXXLQKSIG 204
CR +KC +GM + +L + SKRL K
Sbjct: 588 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDDSEGRDLRQVTSTTKFCR 767
Query: 205 HKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAF 264
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 768 EKTELTADQQTLLDYIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENF 899
Query: 265 SHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLT 324
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 900 LILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA-- 1073
Query: 325 LNGEMAVIRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLAC 383
G ++ +++ G+ +F S+ + E ALL A++++S DR +
Sbjct: 1074--GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKD 1247
Query: 384 VERIEKYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
E +EK Q+ L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1248REAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRV 1415
>gb|U09416.1|MMU09416 Mus musculus retinoid X receptor interacting protein (RIP14-1No.6)
mRNA, complete cds
Length = 1798
Score = 155 bits (393), Expect = 6e-36
Identities = 113/357 (31%), Positives = 167/357 (46%), Gaps = 16/357 (4%)
Frame = +3
Query: 99 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 158
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 414 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 587
Query: 159 CRFKKCIYVGMATDLVLDD----SKRL----------AXXXXXXXXXXXXXXXXLQKSIG 204
CR +KC +GM + +L + SKRL K
Sbjct: 588 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDDSEGRDLRQVTSTTKFCR 767
Query: 205 HKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAF 264
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 768 EKTELTADQQTLLDYIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENF 899
Query: 265 SHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLT 324
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 900 LILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA-- 1073
Query: 325 LNGEMAVIRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLAC 383
G ++ +++ G+ +F S+ + E ALL A++++S DR +
Sbjct: 1074--GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKD 1247
Query: 384 VERIEKYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
E +EK Q+ L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1248REAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRV 1415
>dbj|AB037673.1|AB037673 Paralichthys olivaceus VDRb mRNA for vitamin D receptor b, complete
cds
Length = 2659
Score = 155 bits (393), Expect = 6e-36
Identities = 101/382 (26%), Positives = 168/382 (43%), Gaps = 48/382 (12%)
Frame = +3
Query: 101 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 160
+C VCGDKATG+H+ +TCEGCKGFFRR++++ +++C + G C I K R CQ CR
Sbjct: 672 ICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRK--ATFTCPFNGSCTITKDNRRHCQACR 845
Query: 161 FKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTV 220
K+C+ +GM + +L D + ++ +P TDE+ ++I +
Sbjct: 846 LKRCVDIGMMREFILTDEEVQRKKDLIQRRKDEEAQREAERE-ARRPRLTDEQSQVIAML 1022
Query: 221 TEAHVAT----------------------------------NAQGSHWKQKPK------- 239
EAH T +A + P+
Sbjct: 1023 VEAHHKTYDDSYSDFCRFRPPVREGPVTRSASRAASLHSLSDASSDSFSHSPESVDTKVN 1202
Query: 240 -----FLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCE 294
+ ++ G +P + EG + H +++ +I +V+ FAK +P F EL E
Sbjct: 1203 FNNLLMMYQEQGSSPDSSEEEGSSFSM--LPHLADLVSYSIQKVIGFAKMIPGFRELTAE 1376
Query: 295 DQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE--MAVIRGQLKNGGLGVVSDAIFDLG 352
DQI LLK +E++ LR+ ++ E + + I K G + + +
Sbjct: 1377 DQIALLKSSAIEVIMLRSNQSFNLEDMSWSCGAPDFKYQISDVTKAGHTLELLEPLVKFQ 1556
Query: 353 MSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHF 412
+ L NL + E +L A+ L+S DRPG+ RIE QD + YI
Sbjct: 1557 VGLKKLNLQEEEHVMLMAICLLSPDRPGVQDHARIEALQDRLSETLQAYIQLHHPGGRLL 1736
Query: 413 WPKLLMKVTDLRMIGACHASRF 434
+ K++ K+ DLR + H+ ++
Sbjct: 1737 YAKMIQKLADLRSLNEEHSKQY 1802
>gb|BC015261.1|BC015261 Mus musculus, nuclear receptor subfamily 1, group H, member 4,
clone MGC:18424 IMAGE:4241705, mRNA, complete cds
Length = 1717
Score = 155 bits (393), Expect = 6e-36
Identities = 113/357 (31%), Positives = 167/357 (46%), Gaps = 16/357 (4%)
Frame = +2
Query: 99 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 158
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 416 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 589
Query: 159 CRFKKCIYVGMATDLVLDD----SKRL----------AXXXXXXXXXXXXXXXXLQKSIG 204
CR +KC +GM + +L + SKRL K
Sbjct: 590 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDDSEGRDLRQVTSTTKFCR 769
Query: 205 HKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAF 264
K E T ++ L+ + +++ N Q + K L E+ E F
Sbjct: 770 EKTELTADQQTLLDYIMDSY---NKQRMPQEITNKILKEEFSAE-------------ENF 901
Query: 265 SHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLT 324
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 902 LILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA-- 1075
Query: 325 LNGEMAVIRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLAC 383
G ++ +++ G+ +F S+ + E ALL A++++S DR +
Sbjct: 1076--GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKD 1249
Query: 384 VERIEKYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
E +EK Q+ L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1250REAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRV 1417
>emb|X55069.1|HSCERBA8 Human c-erbA-1 gene, exon 8 for thyroid hormone receptor alpha
Length = 951
Score = 155 bits (392), Expect = 7e-36
Identities = 79/91 (86%), Positives = 85/91 (92%)
Frame = +1
Query: 286 PMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVS 345
P +LPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEMAV R QLKNGGLGVVS
Sbjct: 643 PAAPQLPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKRAQLKNGGLGVVS 822
Query: 346 DAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 376
DAIF+LG SLS+FNLDDTEVALLQAVLLMS+
Sbjct: 823 DAIFELGKSLSAFNLDDTEVALLQAVLLMST 915
>emb|AL590963.10|AL590963 Mouse DNA sequence from clone RP23-395E10 on chromosome 11, complete
sequence [Mus musculus]
Length = 196722
Score = 155 bits (391), Expect = 1e-35
Identities = 79/91 (86%), Positives = 85/91 (92%)
Frame = -1
Query: 286 PMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVS 345
P +LPCEDQIILLKGCCMEIMSLRAAVRYDPES+TLTL+GEMAV R QLKNGGLGVVS
Sbjct: 95061 PAVPQLPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVS 94882
Query: 346 DAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 376
DAIF+LG SLS+FNLDDTEVALLQAVLLMS+
Sbjct: 94881 DAIFELGKSLSAFNLDDTEVALLQAVLLMST 94789
Score = 118 bits (295), Expect = 1e-24
Identities = 51/67 (76%), Positives = 62/67 (92%)
Frame = -2
Query: 373 LMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHAS 432
L+ +DR GL CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHAS
Sbjct: 94310 LLPADRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHAS 94131
Query: 433 RFLHMKV 439
RFLHMKV
Sbjct: 94130 RFLHMKV 94110
Score = 94.0 bits (232), Expect = 3e-17
Identities = 41/49 (83%), Positives = 44/49 (89%)
Frame = -3
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATD 172
GFFRRTIQKNLHP+YSCKY+ CVIDK+TRNQCQ CRFKKCI VGMA D
Sbjct: 97699 GFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMD 97553
Score = 86.7 bits (213), Expect = 4e-15
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = -2
Query: 242 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 291
P+DIGQ+PIV+ P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF E+
Sbjct: 95654 PDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEV 95505
Score = 80.9 bits (198), Expect = 2e-13
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = -3
Query: 90 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRR 128
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCK + R
Sbjct: 101653 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKVWMSR 101537
Score = 73.2 bits (178), Expect = 5e-11
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = -1
Query: 173 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 232
+VLDDSKR+A + +S+ +PEPT EEW+LI TEAH +TNAQGS
Sbjct: 96855 VVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTNAQGS 96676
Query: 233 HWKQKPKFL 241
HWKQ+ KFL
Sbjct: 96675 HWKQRRKFL 96649
Score = 57.8 bits (138), Expect(2) = 3e-12
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +3
Query: 123 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATD 172
+GFFRR+IQ+N+ K E C I ++ RN+CQ+CRFKKC+ VGM+ D
Sbjct: 87228 QGFFRRSIQQNIQYKRCLKNEN-CSIVRINRNRCQQCRFKKCLSVGMSRD 87374
Score = 42.0 bits (97), Expect = 0.12
Identities = 26/79 (32%), Positives = 37/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 231 GSHWKQKPKFLPEDIGQAPIVNAPEG--GKVDLEAFSHFTKIITPAITRVVDFAKKLPMF 288
G+H P P+ P G G+ E + F+ TPA+ VV+FAK +P F
Sbjct: 88639 GAHPANMSLLTPFSS*ACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGF 88818
Query: 289 CELPCEDQIILLKGCCMEI 307
+L DQ+ LLK E+
Sbjct: 88819 RDLSQHDQVTLLKAGTFEV 88875
Score = 39.7 bits (91), Expect(2) = 3e-12
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 101 LCVVCGDKATGYHYRCITCEGCK 123
LC VCGD A+G+HY CEGCK
Sbjct: 87070 LCKVCGDVASGFHYGVHACEGCK 87138
Score = 37.7 bits (86), Expect = 2.3
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Frame = +3
Query: 298 ILLKGC--CMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSL 355
I LK C ++++ +R A ++ + +T+ +L G+G + +A+FD L
Sbjct: 89283 ISLKKCPPSLQVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKL 89462
Query: 356 SSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPK 415
+S L + E+ L AV+L+S+ P + + E + F + F + Y + H+
Sbjct: 89463 NSLALTEEELGLFTAVVLVSAGEPS-SPLTLEEAHAVQFNIPFMENLLYARPSTGHWATD 89639
Query: 416 LLMKVTDL 423
++ + L
Sbjct: 89640 MIQTQSSL 89663
>emb|X04854.1|GGCERBA2 Chicken c-erb A gene exons 2-8
Length = 6307
Score = 154 bits (390), Expect = 1e-35
Identities = 74/109 (67%), Positives = 77/109 (69%), Gaps = 27/109 (24%)
Frame = +3
Query: 91 YIPSYLDKDELCVVCGDKATGYHYRCITCEGCK--------------------------- 123
YIPSYLDKDE CVVCGDKATGYHYRCITCEGCK
Sbjct: 4047 YIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKVRVGGLRGGGVRRDQGVSTVTPPPPPQ 4226
Query: 124 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATD 172
GFFRRTIQKNLHP+YSCKY+G CVIDK+TRNQCQ CRFKKCI VGMA D
Sbjct: 4227 GFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMD 4373
Score = 85.1 bits (209), Expect = 1e-14
Identities = 40/50 (80%), Positives = 45/50 (90%)
Frame = +3
Query: 242 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 291
PEDIGQ+P+ + P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF E+
Sbjct: 5988 PEDIGQSPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEV 6137
Score = 77.4 bits (189), Expect = 3e-12
Identities = 38/69 (55%), Positives = 45/69 (65%)
Frame = +2
Query: 173 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 232
+VLDDSKR+A + KS+ H+P P+ EEWELI VTEAH +TNAQGS
Sbjct: 4847 VVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSPSAEEWELIHVVTEAHRSTNAQGS 5026
Query: 233 HWKQKPKFL 241
HWKQK KFL
Sbjct: 5027 HWKQKRKFL 5053
>gb|AF276753.1|AF276753 Gallus gallus xenobiotic receptor (CXR) mRNA, complete cds
Length = 1340
Score = 154 bits (390), Expect = 1e-35
Identities = 107/364 (29%), Positives = 179/364 (48%), Gaps = 25/364 (6%)
Frame = +3
Query: 100 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQEC 159
++C VCGD+ATGYH+ ++CEGCKGFFRR+I K +H ++C + C I K R QCQ C
Sbjct: 132 KVCAVCGDRATGYHFHVMSCEGCKGFFRRSILKGVH--FTCPFTRSCPITKAKRRQCQAC 305
Query: 160 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP---TDEEWEL 216
R +KC+ VGM D+++ + LQ+ + + +P T E+ EL
Sbjct: 306 RLQKCLDVGMRKDMIMSEE-----------ALGRRRALRLQRRLA-QAQPGGLTAEQQEL 449
Query: 217 IKTVTEAHVATN----AQGSHWKQKPKF-LPEDIGQAP----IVNAPEGGKVDL------ 261
I + AH T +Q H++ + +P Q+P + +A ++D
Sbjct: 450 ISILIAAHKRTFDSSFSQFQHYQPAVRLCIPGPCSQSPPGPGVPSASLSPQLDCLDEDVL 629
Query: 262 -EAFS---HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYD 317
+ FS HF + T I +V+ FAK++P F LP +DQI LLKG + I ++ ++
Sbjct: 630 PDVFSILPHFADLSTFMIQQVIKFAKEIPAFRGLPIDDQISLLKGATLGICQIQFNTVFN 809
Query: 318 PESETLTLNGEMAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSD 377
E+ I+ G + + + +SL L + E LL A+LL S D
Sbjct: 810 EETNAWECGQHCFTIKDGALAGFQQIYLEPLLKFHISLKKLRLHEAEYVLLVAMLLFSPD 989
Query: 378 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH---FWPKLLMKVTDLRMIGACHASRF 434
+ + I++ Q+ L + YI++R H + + KLL+ +T+L+ + + +
Sbjct: 990 HASVTQRDFIDQLQEKVALTLKSYIDHR-HPMPEGRFLYAKLLLLLTELQTLKMENTRQI 1166
Query: 435 LHMK 438
LH++
Sbjct: 1167LHIQ 1178
>gb|AF132752.1|OMTHRA2 Oncorhynchus mykiss thyroid hormone receptor alpha gene, exon 5
Length = 258
Score = 154 bits (389), Expect = 2e-35
Identities = 79/86 (91%), Positives = 82/86 (94%)
Frame = +1
Query: 291 LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKNGGLGVVSDAIFD 350
LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL+GEMAV R QLKNGGLGVVSDAIFD
Sbjct: 1 LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFD 180
Query: 351 LGMSLSSFNLDDTEVALLQAVLLMSS 376
LG SL+ FNLDD+EVALLQAVLLMSS
Sbjct: 181 LGKSLAQFNLDDSEVALLQAVLLMSS 258
>dbj|AK002513.1|AK002513 Mus musculus adult male kidney cDNA, RIKEN full-length enriched
library, clone:0610010O18:nuclear receptor subfamily 1,
group H, member 4, full insert sequence
Length = 1728
Score = 154 bits (389), Expect = 2e-35
Identities = 116/361 (32%), Positives = 172/361 (47%), Gaps = 20/361 (5%)
Frame = +2
Query: 99 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 158
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQE
Sbjct: 431 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQE 604
Query: 159 CRFKK---------CIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 209
CR +K C+Y G+ T++ SKRL + + H
Sbjct: 605 CRLRKCKEMGMLAECMYTGLLTEIQC-KSKRLRKNVKQHADQTANEDDSEGRDLRHVTST 781
Query: 210 TD---EEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSH 266
T E+ EL T + + S+ KQ+ +P++I K+ E FS
Sbjct: 782 TKFCREKTEL--TADQQTLLDYIMDSYNKQR---MPQEI----------TNKILKEEFSA 916
Query: 267 ------FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 320
T++ T + +V+F KKLP F L EDQI LLKG +E M LR+A ++ +
Sbjct: 917 EENLLILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKL 1096
Query: 321 ETLTLNGEMAVIRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRP 379
G ++ +++ G+ +F S+ + E ALL A++++S DR
Sbjct: 1097PA----GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQ 1264
Query: 380 GLACVERIEKYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMK 438
+ E +EK Q+ L + Y+ + HF LL ++T+LR HA + +
Sbjct: 1265YIKDREAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWR 1441
Query: 439 V 439
V
Sbjct: 1442V 1444
>ref|NM_021745.1| Rattus norvegicus farnesoid X activated receptor (LOC60351), mRNA
Length = 2070
Score = 154 bits (388), Expect = 2e-35
Identities = 112/352 (31%), Positives = 174/352 (48%), Gaps = 11/352 (3%)
Frame = +1
Query: 99 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 158
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQ+
Sbjct: 532 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQD 705
Query: 159 CRFKKCIYVGMATDLVLDD----SKRLAXXXXXXXXXXXXXXXXLQ--KSIGHKPEPTDE 212
CR +KC +GM + +L + SKRL + + + + E
Sbjct: 706 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKLCRE 885
Query: 213 EWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHF---TK 269
+ EL TV + + S+ KQ+ +P++I + K + A +F T+
Sbjct: 886 KTEL--TVDQQTLLDYIMDSYSKQR---MPQEITNKIL-------KEEFSAEENFLILTE 1029
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
+ T + +V+F K+LP F L EDQI LLKG +E M LR+A ++ + G
Sbjct: 1030MATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA----GHA 1197
Query: 330 AVIRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 388
++ +++ G+ +F S+ + E ALL A++++S DR + E +E
Sbjct: 1198DLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREAVE 1377
Query: 389 KYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
K Q+ L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1378KLQEPLLDVLQKLCKIYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRV 1530
>gb|U18374.1|RNU18374 Rattus norvegicus farnesoid X activated receptor mRNA, complete cds
Length = 2070
Score = 154 bits (388), Expect = 2e-35
Identities = 112/352 (31%), Positives = 174/352 (48%), Gaps = 11/352 (3%)
Frame = +1
Query: 99 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 158
DELCVVCGD+A+GYHY +TCEGCKGFFRR+I KN Y CK G CV+D R +CQ+
Sbjct: 532 DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKN--AVYKCKNGGNCVMDMYMRRKCQD 705
Query: 159 CRFKKCIYVGMATDLVLDD----SKRLAXXXXXXXXXXXXXXXXLQ--KSIGHKPEPTDE 212
CR +KC +GM + +L + SKRL + + + + E
Sbjct: 706 CRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKLCRE 885
Query: 213 EWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHF---TK 269
+ EL TV + + S+ KQ+ +P++I + K + A +F T+
Sbjct: 886 KTEL--TVDQQTLLDYIMDSYSKQR---MPQEITNKIL-------KEEFSAEENFLILTE 1029
Query: 270 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 329
+ T + +V+F K+LP F L EDQI LLKG +E M LR+A ++ + G
Sbjct: 1030MATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPA----GHA 1197
Query: 330 AVIRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 388
++ +++ G+ +F S+ + E ALL A++++S DR + E +E
Sbjct: 1198DLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREAVE 1377
Query: 389 KYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKV 439
K Q+ L + Y+ + HF LL ++T+LR HA + +V
Sbjct: 1378KLQEPLLDVLQKLCKIYQPENPQHF-ACLLGRLTELRTFNHHHAEMLMSWRV 1530
>dbj|AB037674.1|AB037674 Paralichthys olivaceus VDRa mRNA for vitamin D receptor a, complete
cds
Length = 2429
Score = 152 bits (385), Expect = 5e-35
Identities = 102/389 (26%), Positives = 168/389 (42%), Gaps = 47/389 (12%)
Frame = +2
Query: 93 PSYLDKD--ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDK 150
P D++ +C VCGDKATG+H+ +TCEGCKGFFRR++++ S++C + G C I K
Sbjct: 305 PDEFDRNAPRICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRK--ASFTCPFNGSCTITK 478
Query: 151 VTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPT 210
R CQ CR K+CI +GM + +L D + +P
Sbjct: 479 DNRRHCQACRLKRCIDIGMMKEFILTDEEVQREKEMILKRKEEEAAREAM-----RPRLN 643
Query: 211 DEEWELIKTVTEAHVAT----------------------------------NAQGSHWKQ 236
+E+ +I ++ EAH T +A +
Sbjct: 644 EEQARMISSLVEAHHKTYDASYSDFSRFRPPVREGPVTRSASRAASLHSLSDASSDSFNH 823
Query: 237 KPKFLPEDIGQAPIVNAPEGG---------KVDLEAFSHFTKIITPAITRVVDFAKKLPM 287
P+ + + + ++ + G L H +++ +I +V+ FAK +P
Sbjct: 824 SPESVDTKMNFSNLLMMYQDGASSPDSSEENTKLSMLPHLADLVSYSIQKVIGFAKMIPG 1003
Query: 288 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE--MAVIRGQLKNGGLGVVS 345
F +L EDQI LLK +EI+ LR+ + E + + G I K G +
Sbjct: 1004FRDLTAEDQIALLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELL 1183
Query: 346 DAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR 405
+ + + L NL + E LL + L+S DRPG+ R+E+ QD A + YI
Sbjct: 1184EPLVKFQVGLKKLNLHEEEHVLLMGICLLSPDRPGVQDHARVEQLQDRLPEALQAYIRIN 1363
Query: 406 KHHVTHFWPKLLMKVTDLRMIGACHASRF 434
+ K++ K+ DLR + H+ ++
Sbjct: 1364HPGGRLLYAKMIQKLADLRSLNEEHSKQY 1450
>emb|X51548.1|DME75A Drosophila mRNA for ecdysone-inducible gene E75A
Length = 5970
Score = 151 bits (382), Expect = 1e-34
Identities = 103/346 (29%), Positives = 166/346 (47%), Gaps = 11/346 (3%)
Frame = +1
Query: 101 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 160
LC VCGDKA+G+HY +CEGCKGFFRR+IQ+ + C +C I ++ RN+CQ CR
Sbjct: 1420 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQ-YRPCTKNQQCSILRINRNRCQYCR 1596
Query: 161 FKKCIYVGMATDLV-LDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKT 219
KKCI VGM+ D V + Q+++ + D++ L+
Sbjct: 1597 LKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSTQNRGQQRALATE---LDDQPRLLAA 1767
Query: 220 VTEAHVAT--------NAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKII 271
V AH+ T +A + P + + P+ APE L++ F++
Sbjct: 1768 VLRAHLETCEFTKEKVSAMRQRARDCPSYSMPTLLACPLNPAPE-----LQSEQEFSQRF 1932
Query: 272 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPE-SETLTLNGEMA 330
I V+DFA +P F L +D+ LLK + + +R +D + + LNG++
Sbjct: 1933 AHVIRGVIDFAGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQV- 2109
Query: 331 VIRGQLKNG-GLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 389
+ R ++NG + D+ F+ ++S NL D E+ L A++L++ DRPGL +E IEK
Sbjct: 2110 MRRDAIQNGANARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEK 2289
Query: 390 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 435
++ + + F KLL + DLR + H + +
Sbjct: 2290 MYSRLKGCLQYIVAQNRPDQPEFLAKLLETMPDLRTLSTLHTEKLV 2427
>ref|NM_009803.1| Mus musculus nuclear receptor subfamily 1, group I, member 3
(Nr1i3), mRNA
Length = 1350
Score = 151 bits (381), Expect = 1e-34
Identities = 101/335 (30%), Positives = 157/335 (46%), Gaps = 5/335 (1%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K + P C + G+C + K R C CR
Sbjct: 208 CVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGP--ICPFAGRCEVSKAQRRHCPACRL 381
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC+ VGM D++L S LQ + ++ EL++ +
Sbjct: 382 QKCLNVGMRKDMIL--SAEALALRRARQAQRRAEKASLQLN--------QQQKELVQILL 531
Query: 222 EAHVATNAQGSHWKQKPKFLPED---IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRV 278
AH T G + Q +F P + P P G + L +HF I T + ++
Sbjct: 532 GAH--TRHVGPLFDQFVQFKPPAYLFMHHRPF--QPRGPVLPL--LTHFADINTFMVQQI 693
Query: 279 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKN 338
+ F K LP+F L EDQI LLKG +EI+ + + ++E + +
Sbjct: 694 IKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKMEDAVHA 873
Query: 339 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAF 398
G ++I +L +L + E L+ A L S DRPG+ E I++ Q+ L
Sbjct: 874 GFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMALIL 1053
Query: 399 EHYINYRKHHV--THFWPKLLMKVTDLRMIGACHA 431
++I ++ + + KL+ + DLR I ++
Sbjct: 1054NNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYS 1158
>gb|AF009327.1|AF009327 Mus musculus orphan nuclear hormone receptor isoform mCAR1 mRNA,
complete cds
Length = 1350
Score = 151 bits (381), Expect = 1e-34
Identities = 101/335 (30%), Positives = 157/335 (46%), Gaps = 5/335 (1%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K + P C + G+C + K R C CR
Sbjct: 208 CVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGP--ICPFAGRCEVSKAQRRHCPACRL 381
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC+ VGM D++L S LQ + ++ EL++ +
Sbjct: 382 QKCLNVGMRKDMIL--SAEALALRRARQAQRRAEKASLQLN--------QQQKELVQILL 531
Query: 222 EAHVATNAQGSHWKQKPKFLPED---IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRV 278
AH T G + Q +F P + P P G + L +HF I T + ++
Sbjct: 532 GAH--TRHVGPLFDQFVQFKPPAYLFMHHRPF--QPRGPVLPL--LTHFADINTFMVQQI 693
Query: 279 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQLKN 338
+ F K LP+F L EDQI LLKG +EI+ + + ++E + +
Sbjct: 694 IKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKMEDAVHA 873
Query: 339 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAF 398
G ++I +L +L + E L+ A L S DRPG+ E I++ Q+ L
Sbjct: 874 GFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMALIL 1053
Query: 399 EHYINYRKHHV--THFWPKLLMKVTDLRMIGACHA 431
++I ++ + + KL+ + DLR I ++
Sbjct: 1054NNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYS 1158
>ref|NM_022941.1| Rattus norvegicus strain Fischer nuclear receptor (CAR) (Nr1i3),
mRNA
Length = 1077
Score = 150 bits (380), Expect = 2e-34
Identities = 102/341 (29%), Positives = 157/341 (45%), Gaps = 11/341 (3%)
Frame = +1
Query: 102 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 161
CVVCGD+ATGYH+ +TCEGCKGFFRRT+ K + P C + G+C + K R C CR
Sbjct: 61 CVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGP--ICPFAGRCEVSKAQRRHCPACRL 234
Query: 162 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 221
+KC+ VGM D++L S LQ S ++ ELI+T+
Sbjct: 235 QKCLNVGMRKDMIL--SAEALALRRARQARRRAQKASLQLS--------QQQKELIQTLL 384
Query: 222 EAHVATNAQGSHWKQKPKFLPEDI---------GQAPIVNAPEGGKVDLEAFSHFTKIIT 272
AH T G + Q +F P AP+ L +HF I T
Sbjct: 385 GAH--TRHVGPMFDQFVQFRPPAYLFSHHRPFQPLAPV----------LPLLTHFADINT 528
Query: 273 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVI 332
+ +++ F K LP+F L EDQI LLKG +EI+ + + +++ +
Sbjct: 529 FMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTQNFFCGPLCYKM 708
Query: 333 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQD 392
+ G + I +L L + E AL+ A+ L S DRPG+ E I++ Q+
Sbjct: 709 EDAVHVGFQYEFLELIIHFHKTLKRLQLQEPEYALMAAMALFSPDRPGVTQREEIDQLQE 888
Query: 393 SFLLAFEHYINYRKHHV--THFWPKLLMKVT