TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(119 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,171,752 sequences; 566,364,212 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
gb|AY007153.1| Homo sapiens clone CDABP0092 mRNA sequence 222 5e-57
gb|AF072097.1|AF072097 Homo sapiens beta-2 microglobulin ge... 222 5e-57
gb|M30683.1|CHPMHCBAC Pan troglodytes beta-2-microglobulin ... 222 5e-57
ref|NM_004048.1| Homo sapiens beta-2-microglobulin (B2M), mRNA 222 5e-57
dbj|AB021288.1|AB021288 Homo sapiens mRNA for beta 2-microg... 222 5e-57
gb|M30684.1|GORMHCBAA Gorilla gorilla beta-2-microglobulin ... 222 5e-57
emb|V00567.1|HSMGLO Human messenger RNA fragment for the be... 219 3e-56
gb|S82300.1|S82300 beta 2-microglobulin {C to A point mutat... 218 9e-56
gb|M30682.1|ORAMHCBAC Pongo pygmaeus beta-2-microglobulin m... 215 6e-55
dbj|D17039.1|HUMD3F02M5 Human HepG2 partial cDNA, clone hmd... 203 2e-51
gb|AF042146.1|AF042146 Aotus azarai beta-2 microglobulin (A... 203 2e-51
gb|S82297.1|S82297 beta 2-microglobulin {11bp deleted betwe... 201 9e-51
gb|AF042144.1|AF042144 Aotus nancymaae beta-2 microglobulin... 201 9e-51
gb|AF042145.1|AF042145 Aotus nancymaae beta-2 microglobulin... 201 1e-50
gb|AC025270.6| Homo sapiens chromosome 15 clone CTD-2165P21... 198 6e-50
gb|AC018901.8| Homo sapiens chromosome 15 clone RP11-292P13... 198 6e-50
gb|M17987.1|HUMB2M02 Homo sapiens beta-2-microglobulin (B2M... 195 5e-49
gb|S71244.1|S71244 Beta 2m=beta 2-microglobulin [Saguinus o... 188 8e-47
gb|AF032093.1|AAB2MCG2 Aotus azarai beta-2-microglobulin pr... 184 2e-45
gb|AF032090.1|ALB2MCG2 Aotus lemurinus beta-2-microglobulin... 184 2e-45
gb|AF068767.1|CAPEB2M2 Callithrix penicillata beta-2-microg... 182 3e-45
gb|AF032045.1|CAKUB2MP2 Callithrix kuhli beta-2-microglobul... 182 3e-45
gb|AF084623.1|CJB2MG2 Callithrix jacchus beta-2-microglobul... 182 3e-45
gb|AF084620.1|CAB2MG2 Callithrix aurita beta-2-microglobuli... 182 3e-45
gb|AF032084.1|PMB2MCG2 Callithrix pygmaea beta-2-microglobu... 182 4e-45
gb|AF032087.1|APB2MCG2 Ateles paniscus beta-2-microglobulin... 182 4e-45
gb|AF068769.1|CAHUB2M2 Callithrix humeralifer beta-2-microg... 182 4e-45
gb|AF032057.1|CPPB2M2 Callicebus personatus personatus beta... 182 4e-45
gb|AF032063.1|CPB2ML2 Callicebus personatus nigrifrons beta... 182 4e-45
gb|AF032060.1|CPB2MC2 Callicebus personatus nigrifrons beta... 182 4e-45
gb|AF032069.1|CTB2MCG2 Callicebus torquatus beta-2-microglo... 182 4e-45
gb|AF032042.1|CAEMB2MP2 Callithrix emiliae beta-2-microglob... 182 4e-45
gb|AF032036.1|LECHB2MP2 Leontopithecus chrysopygus beta-2-m... 182 4e-45
gb|AF032066.1|CMB2MCG2 Callicebus hoffmannsi beta-2-microgl... 181 1e-44
gb|AF032039.1|CAGOB2MP2 Callimico goeldii beta-2-microglobu... 181 1e-44
gb|AF069326.1|SEG_CAMOB2M2 Callicebus moloch beta-2-microgl... 181 1e-44
gb|AF032018.1|CEOLB2MP2 Cebus olivaceus beta-2-microglobuli... 180 2e-44
gb|AF032048.1|ALSEB2MP2 Alouatta seniculus beta-2-microglob... 180 2e-44
gb|AF032021.1|CEALB2MP2 Cebus albifrons beta-2-microglobuli... 180 2e-44
gb|AF031891.1|CAB2MCG2 Cebus apella beta-2 microglobulin pr... 180 2e-44
gb|AF032054.1|LALAB2MP2 Lagothrix lagotricha beta-2-microgl... 180 2e-44
gb|AF032078.1|CEB2MCG2 Cacajao melanocephalus beta-2-microg... 179 4e-44
gb|AF032033.1|SAIMB2MP2 Saguinus imperator beta-2-microglob... 179 5e-44
gb|AF032024.1|SAMIB2MP2 Saguinus midas midas beta-2-microgl... 179 5e-44
gb|AF032030.1|SAOEB2MP2 Saguinus oedipus beta-2-microglobul... 179 5e-44
gb|AF084635.1|SMB2MG2 Saguinus mystax beta-2-microglobulin ... 179 5e-44
gb|AF084629.1|SBMB2MG2 Saguinus bicolor martinsi beta-2-mic... 179 5e-44
gb|AF084626.1|SBBB2MG2 Saguinus bicolor bicolor beta-2-micr... 179 5e-44
gb|AF032027.1|SMNIB2MP2 Saguinus midas niger beta-2-microgl... 179 5e-44
gb|AF032072.1|PIB2MCG2 Pithecia irrorata beta-2-microglobul... 178 8e-44
gb|AF068763.1|SUB2M2 Saimiri ustus beta-2-microglobulin pre... 177 1e-43
gb|AF068765.1|SSB2M2 Saimiri sciureus beta-2-microglobulin ... 177 1e-43
gb|AF032081.1|SBB2MCG2 Saimiri boliviensis beta-2-microglob... 177 1e-43
gb|AF032051.1|BRARB2MP2 Brachyteles arachnoides beta-2-micr... 177 2e-43
gb|AF032075.1|CSB2MCG2 Chiropotes satanas beta-2-microglobu... 176 2e-43
gb|AF084632.1|SFB2MG2 Saguinus fuscicollis beta-2-microglob... 176 2e-43
emb|X07621.1|HSB2MMU Human mutant (Daudi) beta2 - microglob... 173 3e-42
gb|S54761.1|S54761 beta 2- mu =beta 2-microglobulin [human,... 170 2e-41
emb|X69084.1|BTB2MIT B.taurus mRNA for beta 2-microglobulin 169 3e-41
emb|X69083.1|ECB2M E.caballus mRNA for beta 2-microglobulin 169 4e-41
gb|L13854.1|PIGMICRO2B Sus scrofa beta 2-microglobulin mRNA... 168 9e-41
gb|AF232726.1|AF232726 Marmota monax beta-2-microglobulin m... 167 1e-40
ref|NM_012512.1| Rattus norvegicus Beta-2-microglobulin (B2... 166 3e-40
emb|Y00441.1|RNB2MR Rat mRNA for beta-2-microglobulin 166 3e-40
emb|Y08531.1|RNBET2MIC R.norvegicus mRNA for beta 2 microgl... 166 3e-40
gb|M84365.1|MUSMHMCGBD Mus musculus MHC class I B(2)-microg... 164 1e-39
gb|M84367.1|MUSMHMCGBF Mus musculus MHC class I B(2)-microg... 164 1e-39
emb|X57112.1|CGB2MG Hamster mRNA for beta 2-microglobulin 163 2e-39
gb|M84364.1|MUSMHMCGBC Mus musculus MHC class I B(2)-microg... 163 3e-39
dbj|AK019389.1|AK019389 Mus musculus 12 days embryo head cD... 162 4e-39
gb|AF148875.1|AF148875 Cavia porcellus beta2 microglobulin ... 162 5e-39
ref|NM_009735.1| Mus musculus beta-2 microglobulin (B2m), mRNA 161 8e-39
emb|X01838.1|MMB2MR Mouse mRNA for beta2-microglobulin 161 8e-39
dbj|AK020632.1|AK020632 Mus musculus adult male urinary bla... 161 1e-38
gb|AF452448.1|AF452448 Sus scrofa beta-2-microglobulin prot... 152 4e-36
gb|M84366.1|MUSMHMCGBE Mus musculus MHC class I B(2)-microg... 146 3e-34
gb|L04993.1|MUSBMICROB Mus spretus beta-2-microglobulin gen... 146 4e-34
gb|M84362.1|MUSMHMCGBA Mus spretus MHC class I B(2)-microgl... 146 4e-34
gb|L04994.1|MUSBMICROC Mus spretus germline beta-2-microglo... 146 4e-34
gb|L04992.1|MUSBMICROA Mus spretus germline beta-2-microglo... 146 4e-34
gb|L05578.1|MUSZYD Mus spicilegus beta-2 microglobulin gene 145 5e-34
gb|J00363.1|MUSB2M2 mouse beta-2-microglobulin gene(seg 2) 144 2e-33
gb|L05579.1|MUSPAH Mus pahari beta-2 microglobulin gene 144 2e-33
gb|M84363.1|MUSMHMCGBB Mus muscculus MHC class I B(2)-micro... 144 2e-33
gb|L05899.1|MUSB2MICR Mus spretoides beta-2-microglobulin r... 143 2e-33
gb|L04989.1|MUSKARB2MG Mus caroli beta-2-microglobulin gene... 142 4e-33
gb|L04988.1|MUSCRPB2MG Mus cervicolor beta-2-microglobulin ... 140 1e-32
gb|L05580.1|MUSPTX Mus platythrix beta-2 microglobulin gene 139 3e-32
gb|L05581.1|MUSCOK Mus cooki beta-2 microglobulin gene 139 6e-32
gb|AF191646.2|AF191646 Trichosurus vulpecula beta-2 microgl... 134 1e-30
gb|U26663.1|RNU26663 Rattus norvegicus prostaglandin F2a re... 134 2e-30
gb|AY057803.1| Mus minutoides beta-2-microglobulin (B2m) ge... 124 1e-27
gb|AY057801.1| Mus musculus molossinus beta-2-microglobulin... 123 2e-27
gb|AY057800.1| Mus musculus musculus beta-2-microglobulin (... 123 3e-27
gb|AY057802.1| Mus saxicola beta-2-microglobulin (B2m) gene... 117 2e-25
gb|M84767.1|CHKMHC1AB Chicken MHC class I beta-2-microglobu... 114 1e-24
emb|Z48921.1|GGB2MGBMR G.gallus mRNA for beta2-microglobulin 114 1e-24
gb|AF016041.1|AF016041 Ictalurus punctatus beta-2 microglob... 111 1e-23
emb|Z48922.1|GGB2MGB5 G.gallus gene for beta-2 microglobuli... 110 3e-23
emb|Z48931.1|GGB2MGB6 G.gallus gene for beta-2 microglobuli... 110 3e-23
gb|AF016043.1|AF016043 Ictalurus lupus beta-2 microglobulin... 107 2e-22
gb|AF016042.1|AF016042 Ictalurus punctatus beta-2 microglob... 107 2e-22
gb|AF022958.1|AF022958 Ictalurus furcatus beta-2 microglobu... 105 9e-22
gb|AF016044.1|AF016044 Ictalurus pricei beta-2 microglobuli... 104 1e-21
gb|AF221077.1|AF221077 Gallus gallus strain breed Leghorn b... 104 1e-21
gb|AF221076.1|AF221076 Gallus gallus strain breed Fayoumi b... 104 1e-21
gb|AF022959.1|AF022959 Ameiurus natalis beta-2 microglobuli... 103 2e-21
gb|L63533.1|ONHB2MD Oncorhynchus mykiss (clone Jb-6) beta-2... 103 3e-21
gb|AF022960.1|AF022960 Ameiurus catus beta-2 microglobulin ... 103 3e-21
gb|AF180485.1|AF180485 Salmo salar clone BA7 beta-2 microgl... 102 6e-21
gb|AF180480.1|AF180480 Salmo salar clone BA14 beta-2 microg... 102 6e-21
gb|AF180488.1|AF180488 Salmo salar clone BD3 beta-2 microgl... 102 6e-21
gb|AF180487.1|AF180487 Salmo salar clone BD2 beta-2 microgl... 102 6e-21
gb|AF180484.1|AF180484 Salmo salar clone BA6 beta-2 microgl... 102 6e-21
gb|L63539.1|ONHM2MJ Oncorhynchus mykiss (clone Jb-12) beta-... 102 8e-21
gb|AF180483.1|AF180483 Salmo salar clone BA5 beta-2 microgl... 101 1e-20
gb|L63535.1|ONHB2MF Oncorhynchus mykiss (clone Jb-8) beta-2... 100 2e-20
gb|L63537.1|ONHB2MH Oncorhynchus mykiss (clone Jb-10) beta-... 100 2e-20
gb|L49056.1|ONHMHB2M Oncorhynchus mykiss beta-2 microglobul... 100 2e-20
gb|L47354.1|ONHB2M Oncorhynchus mykiss (clone Jb-1) beta-2 ... 100 2e-20
gb|L63532.1|ONHB2MC Oncorhynchus mykiss (clone Jb-5) beta-2... 100 2e-20
gb|L63538.1|ONHB2MI Oncorhynchus mykiss (clone Jb-11) beta-... 100 2e-20
gb|L63534.1|ONHB2ME Oncorhynchus mykiss (clone Jb-7) beta-2... 100 2e-20
gb|L63530.1|ONHB2MA Oncorhynchus mykiss (clone Jb-3) beta-2... 100 2e-20
gb|L63536.1|ONHB2MG Oncorhynchus mykiss (clone Jb-9) beta-2... 100 2e-20
gb|L63531.1|ONHB2MB Oncorhynchus mykiss (clone Jb-4) beta-2... 100 2e-20
emb|AJ132766.1|ABA132766 Acipenser baeri mRNA for beta2-mic... 99 5e-20
gb|AF180490.1|AF180490 Salmo salar clone BE7 beta-2 microgl... 99 6e-20
gb|AF180478.1|AF180478 Salmo salar clone BA1 beta-2 microgl... 99 6e-20
gb|AF180486.1|AF180486 Salmo salar clone BD1 beta-2 microgl... 99 6e-20
gb|AF180479.1|AF180479 Salmo salar clone BA11 beta-2 microg... 99 6e-20
gb|AF180481.1|AF180481 Salmo salar clone BA15 beta-2 microg... 99 6e-20
gb|AF180482.1|AF180482 Salmo salar clone BA2 beta-2 microgl... 99 6e-20
gb|L05383.1|ZEFB2MICA Brachydanio rerio beta-2-microglobuli... 99 8e-20
gb|AF180489.1|AF180489 Salmo salar clone BD4 beta-2 microgl... 97 2e-19
gb|L05384.1|ZEFB2MICB Brachydanio rerio beta-2-microglobuli... 96 4e-19
emb|AJ133655.1|ABA133655 Acipenser baeri B2m/b2 gene, exons... 96 7e-19
emb|AJ133652.1|ABA133652 Acipenser baeri B2m/a1 gene, exons... 94 2e-18
emb|AJ133653.1|ABA133653 Acipenser baeri B2m/a2 gene, exons... 94 2e-18
gb|L05536.1|CYIB2MGLB Cyprinius carpio beta2-microglobulin ... 94 2e-18
emb|Z54151.1|BIB2MGLOB B.intermedius mRNA for beta-2-microg... 93 5e-18
emb|AJ133654.1|ABA133654 Acipenser baeri B2m/b1 gene, exons... 92 6e-18
emb|AJ132752.1|GMO132752 Gadus morhua mRNA for beta2-microg... 91 1e-17
emb|X16956.1|RNB2MG Rat mRNA for beta-2-microglobulin 91 2e-17
emb|X17002.1|MAB2MG Golden hamster partial mRNA for beta 2 ... 86 4e-16
emb|AJ132753.1|GMO132753 Gadus morhua mRNA for beta2-microg... 85 1e-15
dbj|AB006593.1|AB006593 Oryzias latipes orla-B2m mRNA for b... 83 4e-15
gb|J05069.1|DOGSPS Canine 21 kDa signal peptidase subunit m... 78 1e-13
emb|X07447.1|GGBLBET1 Gallus domesticus B-L(beta) gene for ... 73 5e-12
emb|AJ248582.1|GGA248582 Gallus gallus partial B-LB15 minor... 70 2e-11
emb|AJ224349.1|PCO224349 Phasianus colchicus mRNA for MHC c... 70 3e-11
emb|AJ224345.1|PCO224345 Phasianus colchicus mRNA for MHC c... 70 3e-11
emb|AJ224348.1|PCO224348 Phasianus colchicus mRNA for MHC c... 70 3e-11
emb|AJ224344.1|PCO224344 Phasianus colchicus mRNA for MHC c... 70 3e-11
emb|AJ248581.1|GGA248581 Gallus gallus partial B-LB15 major... 70 3e-11
emb|AJ248579.1|GGA248579 Gallus gallus partial B-LB14 major... 70 3e-11
gb|M87655.1|CHKBLBETAC Chicken B-L beta chain mRNA 70 4e-11
gb|L20275.1|GINMHCIIBB Ginglymostoma cirratum MHC class II ... 70 4e-11
gb|L20274.1|GINMHCIIBA Ginglymostoma cirratum MHC class II ... 70 4e-11
gb|AF194146.1|AF194146 Ginglymostoma cirratum clone 1 MHC c... 70 4e-11
gb|M87653.1|CHKBLBETAA Chicken B-L beta chain mRNA 70 4e-11
gb|U02881.1|GGU02881 Gallus gallus SPAFAS line 11 MHC class... 70 4e-11
gb|M87654.1|CHKBLBETAB Chicken B-L beta chain mRNA 70 4e-11
gb|S66480.1|S66480 Gallus gallus major histocompatibility c... 70 4e-11
dbj|AB020221.1|AB020221 Gallus gallus Y-Lb III mRNA, pseud... 69 7e-11
dbj|AB020220.1|AB020220 Gallus gallus Y-Lb III mRNA, pseud... 69 7e-11
gb|M26306.1|CHKMHCBCHA Chicken (clone CCII-4-1) MHC class I... 69 7e-11
emb|AL023516.1|GGBLOCUS Gallus gallus (chicken) DNA sequenc... 69 7e-11
gb|M29763.1|CHKMHBLBA Chicken MHC class II B-LBII-beta gene... 69 7e-11
gb|M26307.1|CHKMHCBCHB Chicken (clone CCII-7-1) MHC class I... 69 7e-11
emb|AJ248586.1|GGA248586 Gallus gallus partial B-LB21 minor... 69 7e-11
emb|AJ248585.1|GGA248585 Gallus gallus partial B-LB21 major... 69 7e-11
emb|AJ248584.1|GGA248584 Gallus gallus partial B-LB19 minor... 69 7e-11
emb|AJ248583.1|GGA248583 Gallus gallus partial B-LB19 major... 69 7e-11
emb|AJ248580.1|GGA248580 Gallus gallus partial B-LB14 minor... 69 7e-11
emb|AJ248578.1|GGA248578 Gallus gallus partial B-LB12c gene... 69 7e-11
emb|AJ248577.1|GGA248577 Gallus gallus partial B-LB12 minor... 69 7e-11
emb|AJ248576.1|GGA248576 Gallus gallus partial B-LB12 major... 69 7e-11
emb|AJ248575.1|GGA248575 Gallus gallus partial B-LB4 minor ... 69 7e-11
emb|AJ248574.1|GGA248574 Gallus gallus partial B-LB4 major ... 69 7e-11
emb|AJ248573.1|GGA248573 Gallus gallus partial B-LB2 minor ... 69 7e-11
emb|AJ248572.1|GGA248572 Gallus gallus partial B-LB2 major ... 69 7e-11
gb|M81624.1|WALMHA Macropus rufogriseus (DAB1) MHC class II... 69 9e-11
gb|AF312029.1|AF312029 Trichosurus vulpecula MHC class II a... 68 1e-10
emb|Y07819.1|BTMHCII2 B.taurus mRNA for MHC class II, clone... 68 2e-10
dbj|D50454.1|BOVNQ1 Bovine mRNA for MHC class II DQA1, comp... 68 2e-10
ref|NM_033554.1| Homo sapiens major histocompatibility comp... 67 2e-10
gb|BC009956.1|BC009956 Homo sapiens, Similar to major histo... 67 2e-10
ref|XM_053718.1| Homo sapiens similar to HLA CLASS II HISTO... 67 3e-10
gb|S40633.1|S40633 HLA class II: DPA1 (DPA1*0101) [human, G... 67 3e-10
gb|M27487.1|HUMMHDPA Homo sapiens MHC class II DPw3-alpha-1... 67 3e-10
gb|AF256651.1|AF256651 Caiman crocodilus MHC class II beta ... 67 3e-10
emb|X00457.1|HSSBA1 Human mRNA for SB classII histocompatib... 67 3e-10
gb|M29938.1|PIGMHDQAA Pig MHC class II SLA-DQ alpha chain m... 67 4e-10
ref|XM_039628.3| Homo sapiens major histocompatibility comp... 66 5e-10
gb|AF277661.1|AF277661 Caiman crocodilus MHC class II beta ... 66 5e-10
gb|AF312030.1|AF312030 Trichosurus vulpecula MHC class II a... 66 5e-10
emb|X80482.1|HSMHCIIHA H.sapiens MHC class II HLA-DPA1 gene... 66 6e-10
emb|X80484.1|HSMHCIID H.sapiens MHC class II HLA-DPA1 gene ... 66 6e-10
emb|X82393.1|HS0201X3 H.sapiens MHC class II HLA-DPA1*0201 ... 66 6e-10
dbj|D13688.1|XELMHCT4 Clawed frog (X. laevis) mRNA for MHC ... 66 6e-10
gb|AF256650.1|AF256650 Caiman crocodilus MHC class II alpha... 66 6e-10
gb|AF212855.1|AF212855 Oreochromis niloticus MHC class II a... 66 6e-10
emb|X81347.1|HSDPA1031 H.sapiens (haplotype DPA1*0301)MHC c... 65 8e-10
emb|X81348.1|HSDPA0104 H.sapiens (haplotype DPA1*0104) MHC ... 65 8e-10
emb|X82392.1|HS0104X3 H.sapiens MHC class II HLA-DPA1*0104 ... 65 8e-10
gb|AF037314.1|AF037314 Bos taurus MHC class II DQA precurso... 65 8e-10
gb|M23904.1|HUMMHDRC02 Human MHC class II lymphocyte antige... 65 8e-10
emb|X03100.1|HSHLASBA Human HLA-SB(DP) alpha gene 65 8e-10
gb|AF390589.1|AF390589 Anas platyrhynchos MHC class II anti... 65 1e-09
gb|U18110.1|MRU18110 Macropus rufogriseus MHC class II DN a... 65 1e-09
gb|M93433.1|SHPMHDQA21 Ovis aries Merino MHC OVAR-DQ-ALPHA-... 65 1e-09
dbj|D13687.1|XELMHCP6 Clawed frog (X. laevis) mRNA for MHC ... 65 1e-09
dbj|D50036.1|D50036 Xenopus laevis mRNA for MHC classII bet... 65 1e-09
dbj|D50035.1|D50035 Xenopus laevis mRNA for MHC class II be... 65 1e-09
gb|M90306.1|BOVMHDQA Bovine MHC LA DQA alpha-5 mRNA, 3' end 65 1e-09
gb|S80409.1|S80390S3 MHC RT1.H alpha =major histocompatibil... 64 2e-09
dbj|D42014.1|RATLECA3 Rattus norvegicus major histocompatib... 64 2e-09
gb|M93430.1|SHPMHCDQA1 Ovis aries Merino MHC OVAR-DQ-ALPHA1... 64 2e-09
dbj|D13685.1|XELMHCF8 Clawed frog (X. laevis) mRNA for MHC ... 64 2e-09
emb|Y14022.1|BIY14022 Bos indicus BoLA DQA3 gene, isolate F100 64 3e-09
gb|AF010497.1|AF010497 Monodelphis domestica MHC class II b... 64 3e-09
gb|M57528.1|DOGMHCDW3 Canine MHC class II DLA-DRB mRNA (Dw3... 64 3e-09
gb|M57537.1|DOGMHCDW1 Canine MHC class II DLA-DRB mRNA (Dw1... 64 3e-09
gb|AF454378.1|AF454378 Xenopus laevis MHC class II antigen ... 64 3e-09
gb|L19451.1|ZEFMHCG Brachydanio rerio (A4) MHC class II int... 63 4e-09
gb|AF212849.1|AF212849 Aulonocara hansbaenschi MHC class II... 63 4e-09
gb|M30117.1|BOVMHWIA Bovine MHC class II BoLA-DQA-alpha gen... 63 4e-09
gb|M33304.1|SHPMHDQAA Sheep MHC class II OLA-DQA alpha-chai... 63 4e-09
emb|Z27164.1|PFMHCDR02 P.fulvus MHC class II DRB gene, exon... 63 4e-09
gb|M93431.1|SHPMHCDQA2 Ovis aries Merino MHC OVAR-DQ-ALPHA-... 63 4e-09
dbj|D50045.1|BOVMQ9 Bovine mRNA for MHC class II DQA2, comp... 63 4e-09
dbj|D50046.1|BOVAQ161B Bovine AQ16-1 mRNA for MHC class II ... 63 4e-09
emb|X80483.1|HSMHCDPA1 H.sapiens MHC class II HLA-DPA1 gene... 63 5e-09
gb|M57466.1|HUMMHDPL Human MHC class II HLA-DP light chain ... 63 5e-09
gb|U47339.1|CFMHCDRB03 Canis familiaris MHC class II DLA DR... 63 5e-09
gb|M29611.1|DOGMHDRBA C.familiaris MHC class II DLA-DR-beta... 62 7e-09
emb|Y14020.1|BIY14020 Bos indicus BoLA DQA3 gene 62 7e-09
gb|M57536.1|DOGMHCDW8 Canine MHC class II DLA-DRB mRNA (Dw8... 62 7e-09
gb|M57529.1|DOGMHCDW4 Canine MHC class II DLA-DRB mRNA (Dw4... 62 7e-09
gb|M57531.1|DOGMHCD9 Canine MHC class II DLA-DRB mRNA (D9),... 62 7e-09
gb|M57535.1|DOGMHCD8 Canine MHC class II DLA-DRB mRNA (D8),... 62 7e-09
gb|M57533.1|DOGMHCD7 Canine MHC class II DLA-DRB mRNA (D7),... 62 7e-09
gb|M57534.1|DOGMHCD6 Canine MHC class II DLA-DRB mRNA (D6),... 62 7e-09
gb|M57532.1|DOGMHCD4 Canine MHC class II DLA-DRB mRNA (D4),... 62 7e-09
emb|Y14021.1|BIY14021 Bos indicus BoLA DQA3 gene, isolate E223 62 9e-09
dbj|D50047.1|BOVKQ217C Bovine KQ217 mRNA for MHC class II D... 62 9e-09
dbj|D50042.1|D50037S3 Xenopus laevis MHC class II beta-chai... 62 9e-09
gb|U77896.1|OCU77896 Oryctolagus cuniculus histocompatibili... 62 9e-09
emb|X03024.1|HSSB3B3 Human gene fragment for HLA class II S... 62 9e-09
dbj|D50049.1|D50049 Bos taurus mRNA for MHC class II DQA2 (... 62 9e-09
emb|X00452.1|HSHLDC2 Human mRNA for DC classII histocompati... 62 9e-09
gb|AF212852.1|AF212852 Aulonocara hansbaenschi MHC class II... 62 9e-09
gb|M97616.1|SQIDRB Scurius aberti aberti (A85) MHC class II... 62 9e-09
dbj|D50048.1|D50048 Bos taurus mRNA for MHC class II DQA2 (... 62 9e-09
gb|M20431.1|HUMMHDQAR Human MHC class II HLA-DQ-alpha (DR2-... 62 1e-08
ref|XM_087937.1| Homo sapiens similar to HLA CLASS II HISTO... 62 1e-08
gb|L34086.1|HUMMHDQAAE Human (clone 8) MHC class II HLA-DQ-... 62 1e-08
gb|L34084.1|HUMMHDQAAC Human (clones '72, '73) MHC class II... 62 1e-08
gb|L34083.1|HUMMHDQAAB Human (clone 13) MHC class II HLA-DQ... 62 1e-08
gb|L34082.1|HUMMHDQAAA Human (clone 96) MHC class II HLA-DQ... 62 1e-08
gb|L42625.1|HUMHLADH Homo sapiens (clones 1, 12) MHC class ... 62 1e-08
gb|S40624.1|S40624 HLA class II: DQA1 (DQA1*0101) [human, G... 62 1e-08
emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N1... 62 1e-08
gb|L35066.1|MOZMHCIIAE Morone saxatilis MHC class II alpha ... 62 1e-08
gb|AF256652.1|AF256652 Caiman crocodilus MHC class II beta ... 62 1e-08
gb|M34996.1|HUMDQA1A Human MHC cell surface glycoprotein (H... 62 1e-08
gb|M29939.1|PIGMHDQAB Pig MHC class II SLA-DQ alpha chain m... 62 1e-08
ref|NM_002122.2| Homo sapiens major histocompatibility comp... 62 1e-08
gb|U77589.1|HSU77589 Human MHC class II HLA-DQ-alpha chain ... 62 1e-08
emb|Z27160.1|PFMHCDR01 P.fulvus MHC class II DRB gene, exon... 62 1e-08
gb|M97628.1|SQIMHCDRAJ Sciurus aberti ferreus (f96) MHC cla... 61 1e-08
gb|AF212851.1|AF212851 Aulonocara hansbaenschi MHC class II... 61 1e-08
gb|M17379.1|HUMMHDRBN Human MHC class II HLA-DR-beta mRNA (... 61 1e-08
gb|M17383.1|HUMMHDRBR Human MHC class II HLA-DR-beta mRNA (... 61 1e-08
gb|M83664.1|HUMMHHLADP Human MHC class II lymphocyte antige... 61 1e-08
gb|S52422.1|S52422 HLA class II: DPB1 (0101) [human, Genomi... 61 1e-08
emb|X03026.1|HSSB4B3 Human gene fragment for HLA class II S... 61 1e-08
gb|AF454374.1|AF454374 Xenopus laevis MHC class II antigen ... 61 1e-08
dbj|D13686.1|XELMHCP1 Clawed frog (X. laevis) mRNA for MHC ... 61 1e-08
gb|BC013184.1|BC013184 Homo sapiens, Similar to major histo... 61 1e-08
emb|X00532.1|HSHA02 Human mRNA for SB beta-chain (clone pII... 61 1e-08
gb|S56369.1|S56369 Popy-DRB5*0603=major histocompatibility ... 61 1e-08
gb|AF194147.1|AF194147 Ginglymostoma cirratum clone 2 MHC c... 61 1e-08
dbj|D13684.1|XELMHCF3 Clawed frog (X. laevis) mRNA for MHC ... 61 1e-08
emb|X02228.1|HSHLADPB Human HLA-DP-beta 1 gene and HLA-DP-a... 61 1e-08
gb|M23908.1|HUMMHDRO3 Human MHC class II lymphocyte antigen... 61 1e-08
gb|L29173.1|L29173 Human MHC class II HLA-SB beta mRNA, 3' end 61 1e-08
gb|K01615.1|HUMMHSBBI Human MHC class II HLA-SB-beta-I gene... 61 1e-08
ref|NM_002121.2| Homo sapiens major histocompatibility comp... 61 1e-08
gb|M22048.1|HUMMHDBW3 Human MHC class II HLA-DRw11-beta-I c... 61 2e-08
emb|AJ293696.1|HSA293696 Homo sapiens partial HLA-DRB1 gene... 61 2e-08
gb|M15377.1|HUMHLADB2 Human HLA-DR beta gene, exon 3 from c... 61 2e-08
gb|M97627.1|SQIMHCDRAI Sciurus aberti ferreus (f96) MHC cla... 61 2e-08
gb|M97626.1|SQIMHCDRAH Sciurus aberti ferreus (f88) MHC cla... 61 2e-08
gb|M97625.1|SQIMHCDRAG Sciurus aberti ferreus (f88) MHC cla... 61 2e-08
gb|M97623.1|SQIMHCDRAE Sciurus aberti chuscensis (c8) MHC c... 61 2e-08
gb|M97622.1|SQIMHCDRAD Sciurus aberti chuscensis (c12) MHC ... 61 2e-08
gb|M97621.1|SQIMHCDRAC Sciurus aberti chuscensis (c12) MHC ... 61 2e-08
gb|U95817.1|HSU95817 Human MHC class II antigen HLA-DR-beta... 61 2e-08
gb|M27689.1|HUMMHDRW Human MHC class II HLA-DR beta gene (D... 61 2e-08
gb|M26038.1|HUMMHDRBBA Human MHC class II DR beta mRNA, com... 61 2e-08
emb|AJ297584.1|HSA297584 Homo sapiens partial mRNA for MHC ... 61 2e-08
emb|AJ297583.1|HSA297583 Homo sapiens partial mRNA for MHC ... 61 2e-08
gb|M97619.1|SQIMHCDRAA Sciurus aberti aberti (A55) MHC clas... 61 2e-08
gb|M27126.1|HUMHLADRWC Human lymphocyte antigen (DRw8) mRNA 61 2e-08
gb|L20726.1|XELNC3 Xenopus laevis non-classical class Ib ge... 61 2e-08
emb|X99895.1|HSDRB1327 H.sapiens mRNA for major histocompat... 61 2e-08
gb|BC007920.1|BC007920 Homo sapiens, clone MGC:14111 IMAGE:... 61 2e-08
emb|AJ302075.1|HSA302075 Homo sapiens mRNA for MHC class II... 61 2e-08
gb|L34089.1|HUMMHDQAAH Human (clones DKB-82, YT-71) MHC cla... 61 2e-08
gb|L34085.1|HUMMHDQAAD Human (clone 73) MHC class II HLA-DQ... 61 2e-08
emb|AJ297587.1|HSA297587 Homo sapiens mRNA for MHC class II... 61 2e-08
emb|AJ297585.1|HSA297585 Homo sapiens mRNA for MHC class II... 61 2e-08
gb|L34352.1|HUMHLADQW Human (clones WL-3 and WL-8) leucocyt... 61 2e-08
gb|AF217962.2|AF217962 Xenopus laevis beta-2 microglobulin ... 61 2e-08
gb|M11161.1|HUMMHDRA1B Human MHC class II HLA DR-beta chain... 61 2e-08
gb|M11124.1|HUMMHDQ Human MHC HLA DQ alpha-chain mRNA from ... 61 2e-08
gb|M27015.1|HUMHLADRWB Human lymphocyte antigen (DRw8) mRNA 61 2e-08
gb|L76133.1|HUMMH1302D Homo sapiens MHC lymphocyte antigen ... 61 2e-08
gb|U65585.1|HSU65585 Homo sapiens MHC class II antigen (HLA... 61 2e-08
gb|M27635.1|HUMHLAW12R Homo sapiens MHC HLA-DRw12 allele mR... 61 2e-08
emb|X00699.1|HSHLDRB2 Human mRNA fragment for class II hist... 61 2e-08
gb|M97629.1|SQIMHCDRAK Sciurus aberti kaibabenis MHC class ... 61 2e-08
gb|L35062.1|MOZMHCIIAA Morone saxatilis MHC class II alpha ... 61 2e-08
ref|XM_045235.3| Homo sapiens major histocompatibility comp... 61 2e-08
ref|XM_042483.1| Homo sapiens similar to HLA CLASS II HISTO... 61 2e-08
gb|M11867.1|HUMMHDR5B Human MHC class II HLA DR5 DR-beta-ch... 61 2e-08
gb|M97615.1|SQIDRA Sciurus aberti kaibabensis (K95) MHC cla... 61 2e-08
gb|BC008403.1|BC008403 Homo sapiens, Similar to major histo... 61 2e-08
gb|M97620.1|SQIMHCDRAB Sciurus aberti aberti (A85) MHC clas... 61 2e-08
gb|U83584.1|HSU83584 Homo sapiens MHC class II antigen HLA-... 61 2e-08
gb|U83583.1|HSU83583 Homo sapiens MHC class II antigen HLA-... 61 2e-08
gb|AF040760.1|AF040760 Xiphophorus maculatus MHC class II b... 61 2e-08
ref|XM_087938.1| Homo sapiens similar to HLA CLASS II HISTO... 60 3e-08
gb|BC015000.1|BC015000 Homo sapiens, Similar to major histo... 60 3e-08
gb|M17382.1|HUMMHDRBZ Human MHC class II HLA-DR-beta mRNA (... 60 3e-08
gb|M16956.1|HUMMHDRA2C Human MHC class II HLA-DR2 (non-Dw2/... 60 3e-08
ref|XM_057913.2| Homo sapiens similar to HLA CLASS II HISTO... 60 3e-08
gb|J03041.1|HUMHLADP4 Human HLA DP4 beta-chain mRNA, comple... 60 3e-08
gb|AF091557.1|AF091557 Aulonocara hansbaenschi MHC class II... 60 3e-08
emb|X00455.1|HSDXA3 H.sapiens gene fragment for classII DX ... 60 3e-08
gb|M32578.1|HUMMHDRBBB Human MHC class II HLA-DR beta-1 mRN... 60 3e-08
emb|X01426.1|HSSB2BR Human mRNA for HLA class II antigen SB... 60 3e-08
emb|X03067.1|HSHLDPWB Human mRNA for HLA-D class II antigen... 60 3e-08
emb|AJ297582.1|HSA297582 Homo sapiens mRNA for MHC class II... 60 3e-08
gb|M22640.1|RABMHDPA Rabbit MHC class II DP alpha-1 gene (R... 60 3e-08
gb|U65217.1|RNU65217 Rattus norvegicus MHC class II antigen... 60 3e-08
gb|M20503.1|HUMMHDRGA Human MHC class II HLA-DR-beta-1 mRNA... 60 3e-08
gb|M33305.1|SHPMHDQAB Sheep MHC class II OLA-DQA alpha-chai... 60 3e-08
gb|BC007963.1|BC007963 Homo sapiens, Similar to major histo... 60 3e-08
gb|M77293.1|CHPMHDRB05 Pan troglodytes MHC class II (DRB6) ... 60 3e-08
gb|K00409.1|HUMMHSBBC Human MHC class II HLA-SB-beta chain ... 60 3e-08
emb|Y07820.1|BTMHCII1 B.taurus mRNA for MHC class II, clone... 60 3e-08
gb|AF454377.1|AF454377 Xenopus laevis MHC class II antigen ... 60 3e-08
gb|M28202.1|HUMMHDPW4 Homo sapiens MHC class II lymphocyte ... 60 3e-08
gb|M28201.1|HUMMHDPW1B Homo sapiens MHC class II lymphocyte... 60 3e-08
gb|M15992.1|HUMMHCDW2A Human (clone FJ0-6) MHC class II DR ... 60 3e-08
gb|U77723.1|PTU77723 Pan troglodytes MHC class II antigen D... 60 3e-08
gb|AF005488.1| Pan troglodytes MHC class II antigen (DRB6) ... 60 3e-08
gb|S40615.1|S40615 HLA class II: DRB (DRB1*0101) [human, Ge... 60 3e-08
gb|M17385.1|HUMMHDRCA Human MHC class II HLA-DR-beta mRNA (... 60 3e-08
ref|NM_002124.1| Homo sapiens major histocompatibility comp... 60 3e-08
emb|X03069.1|HSHLDR1B Human mRNA for HLA-D class II antigen... 60 3e-08
gb|U95989.1| Homo sapiens MHC class II antigen HLA-DR-beta1... 60 3e-08
gb|U92032.1|HSU92032 Homo sapiens P1 clone 797a11 containin... 60 3e-08
gb|M17237.1|HUMMHADX02 Human MHC class II HLA-DQ-alpha gene... 60 3e-08
gb|M29615.1|HUMMHDXAR2 Human MHC class II HLA-DX-alpha chai... 60 3e-08
emb|Z84490.1|HSDV19 Human DNA sequence from clone ICRF6c-DV... 60 3e-08
gb|M21008.1|HUMMHDRA1A Human MHC class II HLA-DR1 beta mRNA... 60 3e-08
gb|L34093.1|HUMMHDQAAL Human (clone 94) MHC class II HLA-DQ... 60 3e-08
gb|M17236.1|HUMMHDQA02 Human MHC class II HLA-DQ-alpha gene... 60 3e-08
gb|M29616.1|HUMMHDQAR2 Human MHC class II HLA-DQ-alpha chai... 60 3e-08
emb|X99896.1|HSDRB1104 H.sapiens mRNA for major histocompat... 60 3e-08
gb|M33600.1|HUMMHDRA1C Human MHC class II HLA-DR-beta-1 (HL... 60 3e-08
gb|U77722.1|PTU77722 Pan troglodytes MHC class II antigen D... 60 4e-08
gb|M26041.1|HUMMHDQADR Human MHC class II DQ alpha mRNA, co... 60 4e-08
gb|M77154.1|GORMHCB108 Gorilla gorilla MHC class II (DRB1-0... 60 4e-08
gb|U51576.1|FCU51576 Felis catus MHC class II antigen DRA(a... 60 4e-08
gb|M21886.1|HUMMHDPB Human MHC class II HLA-DPw4b-beta chai... 60 4e-08
ref|XM_042498.1| Homo sapiens similar to major histocompati... 60 4e-08
emb|Z49762.1|RNRT1MB R.norvegicus mRNA for RT1.Mb 60 4e-08
gb|L34088.1|HUMMHDQAAG Human (clones 5, 9) MHC class II HLA... 60 4e-08
gb|M20506.1|HUMMHDQGB Human MHC class II HLA-DQ-alpha mRNA,... 60 4e-08
gb|M33906.1|HUMHLADQA Human MHC class II HLA-DQA1 mRNA, com... 60 4e-08
gb|U51578.1|FCU51578 Felis catus MHC class II antigen DRA(a... 60 4e-08
gb|AF201296.1|AF201296 Aotus nancymaae MHC class II antigen... 60 4e-08
gb|M77152.1|GORMHCB501 Gorilla gorilla MHC class II DRB5-01... 60 4e-08
gb|L34094.1|HUMMHDQAAM Human (clone 41) MHC class II HLA-DQ... 60 4e-08
gb|L34092.1|HUMMHDQAAK Human (clone 1) MHC class II HLA-DQA... 60 4e-08
gb|L34091.1|HUMMHDQAAJ Human (clone 1) MHC class II HLA-DQA... 60 4e-08
gb|L34090.1|HUMMHDQAAI Human (clone 87) MHC class II HLA-DQ... 60 4e-08
gb|L34087.1|HUMMHDQAAF Human (clone 10) MHC class II HLA-DQ... 60 4e-08
gb|M16995.1|HUMMHDQAW Human MHC class II HLA-DQ-alpha (DQw3... 60 4e-08
gb|J00199.1|HUMMHDRDC human hla-dr heavy chain alloantigen ... 60 4e-08
gb|BC008585.1|BC008585 Homo sapiens, clone MGC:17213 IMAGE:... 60 4e-08
emb|X00370.1|HSGLDC2 Human HLA-DC classII histocompatibilit... 60 4e-08
ref|NM_020056.1| Homo sapiens major histocompatibility comp... 60 4e-08
emb|X00033.1|HSHL06 Human RNA sequence of the human DS glyc... 60 4e-08
gb|AF322869.1|AF322867S3 Homo sapiens MHC class II antigen ... 59 6e-08
emb|Y07898.1|BTDQAALLE B.taurus mRNA for DQA leukocyte anti... 59 6e-08
emb|Z54077.1|PRDB428 P.reticulata Mhc gene, Class IIB 59 6e-08
gb|AF028558.1|AF028558 Heterodontus francisci MHC class I p... 59 6e-08
gb|M15375.1|HUMHLADC2 Human HLA-DR beta gene, exons 3 and 4... 59 6e-08
gb|AF201297.1|AF201297 Aotus nancymaae MHC class II antigen... 59 6e-08
gb|AF201295.1|AF201295 Aotus nancymaae MHC class II antigen... 59 6e-08
gb|AF201293.1|AF201293 Aotus nancymaae MHC class II antigen... 59 6e-08
emb|AJ296091.1|HSA296091 Homo sapiens partial HLA-DQA1 gene... 59 6e-08
emb|AL137064.6|AL137064 Human DNA sequence from clone RP5-8... 59 6e-08
gb|AF212850.1|AF212850 Aulonocara hansbaenschi MHC class II... 59 6e-08
gb|M20138.1|HUMMHDRWB Human MHC class II HLA-DRw10-beta mRN... 59 6e-08
gb|L23526.1|MUSW17A03 Mus musculus castaneus MHC class II H... 59 6e-08
gb|M60060.1|MACMHDRBB Macaca nemestrina MHC class II Mane-D... 59 6e-08
emb|Z24750.1|HSHLADMA H.sapiens HLA-DM gene, exon 3 59 7e-08
gb|M17381.1|HUMMHDRBP Human MHC class II HLA-DR-beta mRNA (... 59 7e-08
dbj|AB062112.1| Homo sapiens HLA-DRB1*1405 mRNA for MHC cla... 59 7e-08
emb|Z49880.1|OADOBB12 O.aries MHC class ll DOB gene (beta 1... 59 7e-08
gb|AF084933.1|AF084933 Rattus norvegicus Class II MHC RT1.D... 59 7e-08
gb|AF201294.1|AF201294 Aotus nancymaae MHC class II antigen... 59 7e-08
gb|M89951.1|GINMHA Ginglymostoma cirratum MHC class II prot... 59 7e-08
gb|AF454380.1|AF454380 Xenopus laevis MHC class II antigen ... 59 7e-08
emb|AJ297503.1|HSA297503 Homo sapiens partial HLA-DRB4 gene... 59 1e-07
gb|M15376.1|HUMHLADA2 Human HLA-DR beta gene, exon 3 from c... 59 1e-07
gb|AF192259.1|AF192259 Homo sapiens clone CTM 9991295 MHC c... 59 1e-07
gb|AF192258.1|AF192258 Homo sapiens clone CTM 4991121 MHC c... 59 1e-07
gb|AF012768.1|AF012768 Homo sapiens MHC class II antigen DQ... 59 1e-07
emb|X02902.1|HSDRB1R Human mRNA for HLA class II DR-beta 1 ... 59 1e-07
gb|M55165.1|PIGSLAC Miniature swine MHC class II SLA-DRB-c ... 59 1e-07
dbj|AB016746.1|AB016746 Sus scrofa (SLA-DRB1*G01) mRNA for ... 59 1e-07
gb|AF291675.1|AF291675 Homo sapiens MHC class II antigen (H... 59 1e-07
emb|AJ297586.2|HSA297586 Homo sapiens mRNA for MHC class II... 59 1e-07
emb|AJ245881.1|HSA245881 Homo sapiens partial mRNA for MHC ... 59 1e-07
gb|BC005312.1|BC005312 Homo sapiens, clone MGC:12387 IMAGE:... 59 1e-07
gb|M55166.1|PIGSLAD Miniature swine MHC class II SLA-DRB-d ... 59 1e-07
gb|AF048707.1|AF048707 Homo sapiens MHC class II antigen HL... 59 1e-07
gb|M28992.1|HUMMHDRB3A Human MHC class II DR-beta-III mRNA,... 59 1e-07
gb|M20550.1|HUMMHDR03 Human MHC class II HLA-DR4-beta (DR4,... 59 1e-07
gb|L42143.1|HUMHLADG Homo sapiens MHC HLA-DRB1*0411 mRNA, c... 59 1e-07
gb|M15178.1|HUMHLADRA Human HLA-DR beta-chain mRNA, partial... 59 1e-07
gb|L35065.1|MOZMHCIIAD Morone saxatilis MHC class II alpha ... 59 1e-07
gb|L35067.1|MOZMHCIIAF Morone saxatilis MHC class II alpha ... 59 1e-07
gb|M30155.1|MUSMHEBI2 Mouse MHC class II E-beta 1 gene, exon 3 59 1e-07
gb|M15355.1|RATMHRTB2 Rat MHC class II RT1.B beta gene, enc... 59 1e-07
gb|M60063.1|MACMHDRBE Macaca nemestrina MHC class II Mane-D... 59 1e-07
emb|Z84477.1|HS265J14 Human DNA sequence from PAC 265J14 on... 59 1e-07
gb|M28991.1|HUMMHDRBIA Human MHC class II DR-beta-I mRNA, 3... 59 1e-07
emb|X12544.1|HSHLADRB Human mRNA for HLA class II DR-beta (... 59 1e-07
dbj|D37955.1|BOVKR1A Bovine BoLA-DRA mRNA for MHC class II ... 59 1e-07
gb|M20555.1|HUMMHDRW01 Human MHC class II HLA-DRw53-beta (D... 59 1e-07
gb|L40561.1|ORAMHCD Pongo pygmaeus major histocompatibility... 59 1e-07
gb|L42154.1|ORAMHCB Pongo pygmaeus major histocompatibility... 59 1e-07
emb|X78308.1|BTFMHCII B.taurus (Fresian) BoLA DR-ALPHA mRNA 59 1e-07
ref|XM_084188.1| Homo sapiens major histocompatibility comp... 59 1e-07
ref|XM_045203.1| Homo sapiens major histocompatibility comp... 59 1e-07
gb|U84892.1|HSU84892 Human MHC class II antigen HLA-DR-beta... 59 1e-07
dbj|D37956.1|BOVMR1B Bovine BoLA-DRA mRNA for MHC class II ... 59 1e-07
gb|AF212856.1|AF212856 Oreochromis niloticus MHC class II a... 59 1e-07
gb|M76489.1|SOEMHCIISD Tamarin MHC class II (DRB*02) mRNA, ... 59 1e-07
gb|M76488.1|SOEMHCIISO Tamarin MHC class II (DRB*01) mRNA, ... 59 1e-07
gb|M76490.1|SOEMHCIIDR Tamarin MHC class II (DRB*03) proces... 59 1e-07
emb|X87344.1|HSEVMHC H.sapiens DMA, DMB, HLA-Z1, IPP2, LMP2... 58 1e-07
gb|AF084934.1|AF084934 Rattus norvegicus Class II MHC RT1.D... 58 1e-07
emb|Z23139.1|HSRING7 H.sapiens RING7 mRNA for HLA class II ... 58 1e-07
ref|NM_002118.3| Homo sapiens major histocompatibility comp... 58 1e-07
gb|S63770.1|S63770 Aulonocara hansbaenschi class II major h... 58 1e-07
gb|L35063.1|MOZMHCIIAB Morone saxatilis MHC class II alpha ... 58 1e-07
gb|L35072.1|MOZMHCIIAG Morone saxatilis MHC class II alpha ... 58 1e-07
gb|L13222.1|AULMCH2BA Aulonocara hansbaenschi MHC class II ... 58 1e-07
gb|AF084932.1|AF084932 Rattus norvegicus Class II MHC RT1.D... 58 1e-07
emb|X76776.1|HSHLADMBG H.sapiens HLA-DMB gene 58 1e-07
gb|M17380.1|HUMMHDRBO Human MHC class II HLA-DR-beta mRNA (... 58 1e-07
gb|M17384.1|HUMMHDRBS Human MHC class II HLA-DR-beta mRNA (... 58 1e-07
gb|L40493.1|CHPMHCDMBB Pan paniscus (individuals Matata and... 58 1e-07
gb|L40492.1|CHPMHCDMBA Pan troglodytes (individuals Tank, A... 58 1e-07
gb|L40559.1|CHPMHCDA Pan paniscus major histocompatibility ... 58 1e-07
gb|L40558.1|CHPMHCD Pan troglodytes major histocompatibilit... 58 1e-07
gb|L27739.1|MACDRA Macaca mulatta MHC class II DRA mRNA, Ma... 58 1e-07
gb|M97624.1|SQIMHCDRAF Sciurus aberti chuscensis (c8) MHC c... 58 1e-07
emb|X00700.1|HSHLDRB1 Human mRNA fragment for class II hist... 58 1e-07
gb|U15085.1|HSU15085 Human HLA-DMB mRNA, complete cds 58 1e-07
gb|M12382.1|RATMHEBC Rat MHC RT1 class II E-beta chain mRNA... 58 1e-07
gb|U31599.1|RNU31599 Rattus norvegicus MHC class II-like be... 58 1e-07
gb|U16762.1|HSU16762 Human (DMB) gene, partial cds 58 2e-07
gb|U20313.1|MSU20313 Mus spretus MHC class II H2-M beta cha... 58 2e-07
gb|U20315.1|MMU20315 Mus musculus strain BALB/c MHC class I... 58 2e-07
gb|U20309.1|MMU20309 Mus musculus strain B10/Led MHC class ... 58 2e-07
gb|U65218.1|RNU65218 Rattus norvegicus MHC class II antigen... 58 2e-07
gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibil... 58 2e-07
gb|M60100.1|HRSMHDRA E.caballus MHC class II DR alpha chain... 58 2e-07
gb|BC003718.1|BC003718 Mus musculus, Similar to histocompat... 58 2e-07
gb|M20556.1|HUMMHDRP01 Human MHC class II HLA-DR-beta-psi-2... 58 2e-07
gb|L19450.1|ZEFMHCF Brachydanio rerio (A3) MHC class II int... 58 2e-07
gb|BC018835.1|BC018835 Homo sapiens, clone IMAGE:3345694, mRNA 58 2e-07
gb|BC018834.1|BC018834 Homo sapiens, clone IMAGE:3345479, mRNA 58 2e-07
gb|BC018832.1|BC018832 Homo sapiens, clone IMAGE:3346028, mRNA 58 2e-07
gb|BC001023.1|BC001023 Homo sapiens, Similar to major histo... 58 2e-07
emb|V00522.1|HSHL01 Human mRNA encoding major histocompatib... 58 2e-07
gb|M59826.1|BOVMHLADBQ Bovine MHC class II BoLA-DBQ-chain m... 58 2e-07
gb|U66826.1|HSU66826 Homo sapiens MHC class II antigen (HLA... 58 2e-07
ref|NM_010388.1| Mus musculus histocompatibility 2, class I... 58 2e-07
>gb|AY007153.1| Homo sapiens clone CDABP0092 mRNA sequence
Length = 926
Score = 222 bits (565), Expect = 5e-57
Identities = 106/119 (89%), Positives = 106/119 (89%)
Frame = +1
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 13 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 192
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 193 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 369
>gb|AF072097.1|AF072097 Homo sapiens beta-2 microglobulin gene, complete cds
Length = 1397
Score = 222 bits (565), Expect = 5e-57
Identities = 106/119 (89%), Positives = 106/119 (89%)
Frame = +3
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 801 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 980
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 981 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 1157
>gb|M30683.1|CHPMHCBAC Pan troglodytes beta-2-microglobulin mRNA (PATRB2M)
Length = 917
Score = 222 bits (565), Expect = 5e-57
Identities = 106/119 (89%), Positives = 106/119 (89%)
Frame = +1
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 1 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 180
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 181 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 357
>ref|NM_004048.1| Homo sapiens beta-2-microglobulin (B2M), mRNA
Length = 925
Score = 222 bits (565), Expect = 5e-57
Identities = 106/119 (89%), Positives = 106/119 (89%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 14 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 193
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 194 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 370
>dbj|AB021288.1|AB021288 Homo sapiens mRNA for beta 2-microglobulin, complete cds
Length = 925
Score = 222 bits (565), Expect = 5e-57
Identities = 106/119 (89%), Positives = 106/119 (89%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 14 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 193
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 194 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 370
>gb|M30684.1|GORMHCBAA Gorilla gorilla beta-2-microglobulin mRNA (GOGOB2M)
Length = 929
Score = 222 bits (565), Expect = 5e-57
Identities = 106/119 (89%), Positives = 106/119 (89%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 17 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 196
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 197 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 373
>emb|V00567.1|HSMGLO Human messenger RNA fragment for the beta-2 microglobulin
Length = 549
Score = 219 bits (558), Expect = 3e-56
Identities = 103/103 (100%), Positives = 103/103 (100%)
Frame = +1
Query: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 76
GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF
Sbjct: 22 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 201
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 202 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 330
>gb|S82300.1|S82300 beta 2-microglobulin {C to A point mutation at nucleotide 121}
[human, colon cancer cell line HCT, mRNA Mutant, 427 nt]
Length = 427
Score = 218 bits (554), Expect = 9e-56
Identities = 105/119 (88%), Positives = 105/119 (88%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQV SRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 32 MSRSVALAVLALLSLSGLEAIQRTPKIQV*SRHPAENGKSNFLNCYVSGFHPSDIEVDLL 211
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 212 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 388
>gb|M30682.1|ORAMHCBAC Pongo pygmaeus beta-2-microglobulin mRNA (POPYB2M)
Length = 934
Score = 215 bits (547), Expect = 6e-55
Identities = 102/119 (85%), Positives = 104/119 (86%)
Frame = +3
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQVY+RHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 21 MSRSVALAVLALLSLSGLEAIQRTPKIQVYTRHPAENGKSNFLNCYVSGFHPSDIEVDLL 200
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNG +IEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPK VKWDRDM
Sbjct: 201 KNGVKIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKTVKWDRDM 377
>dbj|D17039.1|HUMD3F02M5 Human HepG2 partial cDNA, clone hmd3f02m5
Length = 377
Score = 203 bits (517), Expect = 2e-51
Identities = 99/116 (85%), Positives = 101/116 (86%), Gaps = 1/116 (0%)
Frame = +1
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 25 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 204
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPK-IVKW 115
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLS+PK +KW
Sbjct: 205 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSKPKDRLKW 372
>gb|AF042146.1|AF042146 Aotus azarai beta-2 microglobulin (Aotus-B2m) mRNA, allele 2.1,
complete cds
Length = 877
Score = 203 bits (516), Expect = 2e-51
Identities = 96/119 (80%), Positives = 101/119 (84%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GLEAIQR PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLL
Sbjct: 11 MARFVVVALLVLLSLSGLEAIQRAPKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLL 190
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNG++IEKVEHSDLSFSKDWSFYLLYYTEFTP EKDEYACRV+HVTLS PK VKWDR+M
Sbjct: 191 KNGKKIEKVEHSDLSFSKDWSFYLLYYTEFTPNEKDEYACRVSHVTLSTPKTVKWDRNM 367
>gb|S82297.1|S82297 beta 2-microglobulin {11bp deleted between nucleotides 98-99}
[human, colon cancer cell line HCT, mRNA Mutant, 416 nt]
Length = 416
Score = 201 bits (511), Expect = 9e-51
Identities = 94/97 (96%), Positives = 94/97 (96%)
Frame = +3
Query: 23 RTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSF 82
R IQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSF
Sbjct: 87 RLSSIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSF 266
Query: 83 YLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
YLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 267 YLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 377
>gb|AF042144.1|AF042144 Aotus nancymaae beta-2 microglobulin (Aotus-B2m) mRNA, allele 1.1,
complete cds
Length = 877
Score = 201 bits (511), Expect = 9e-51
Identities = 95/119 (79%), Positives = 100/119 (83%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GLEAIQ PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLL
Sbjct: 11 MARFVVVALLVLLSLSGLEAIQHAPKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLL 190
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNG++IEKVEHSDLSFSKDWSFYLLYYTEFTP EKDEYACRV+HVTLS PK VKWDR+M
Sbjct: 191 KNGKKIEKVEHSDLSFSKDWSFYLLYYTEFTPNEKDEYACRVSHVTLSTPKTVKWDRNM 367
>gb|AF042145.1|AF042145 Aotus nancymaae beta-2 microglobulin (Aotus-B2m) mRNA, allele 1.2,
partial cds
Length = 862
Score = 201 bits (510), Expect = 1e-50
Identities = 93/103 (90%), Positives = 97/103 (93%)
Frame = +2
Query: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 76
GLEAIQ PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSF
Sbjct: 44 GLEAIQHAPKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSF 223
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
SKDWSFYLLYYTEFTP EKDEYACRV+HVTLS PK VKWDR+M
Sbjct: 224 SKDWSFYLLYYTEFTPNEKDEYACRVSHVTLSTPKTVKWDRNM 352
>gb|AC025270.6| Homo sapiens chromosome 15 clone CTD-2165P21 map 15q15, complete sequence
Length = 128484
Score = 198 bits (504), Expect = 6e-50
Identities = 92/94 (97%), Positives = 93/94 (98%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY
Sbjct: 125997 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 126176
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW +
Sbjct: 126177 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWGK 126278
>gb|AC018901.8| Homo sapiens chromosome 15 clone RP11-292P13 map 15q15, complete
sequence
Length = 199503
Score = 198 bits (504), Expect = 6e-50
Identities = 92/94 (97%), Positives = 93/94 (98%)
Frame = +2
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY
Sbjct: 38771 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 38950
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW +
Sbjct: 38951 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWGK 39052
>gb|M17987.1|HUMB2M02 Homo sapiens beta-2-microglobulin (B2M) gene, exons 2, 3, 4, and
complete cds
Length = 2871
Score = 195 bits (496), Expect = 5e-49
Identities = 91/94 (96%), Positives = 92/94 (97%)
Frame = +2
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TPKIQVYSRHPAENGKSNFLNCYVSGFH SDIEVDLLKNGERIEKVEHSDLSFSKDWSFY
Sbjct: 125 TPKIQVYSRHPAENGKSNFLNCYVSGFHQSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 304
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW +
Sbjct: 305 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWGK 406
>gb|S71244.1|S71244 Beta 2m=beta 2-microglobulin [Saguinus oedipus=cotton-top tamarins,
1605L cell line, mRNA, 297 nt]
Length = 297
Score = 188 bits (477), Expect = 8e-47
Identities = 86/99 (86%), Positives = 92/99 (92%)
Frame = +1
Query: 21 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDW 80
IQ PKIQVYSR+PA+NGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDW
Sbjct: 1 IQHPPKIQVYSRYPADNGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDW 180
Query: 81 SFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
SFYLLYYTEFTP EKDEYACRV+HVT S PK VKWDR+M
Sbjct: 181 SFYLLYYTEFTPNEKDEYACRVSHVTFSTPKTVKWDRNM 297
>gb|AF032093.1|AAB2MCG2 Aotus azarai beta-2-microglobulin precursor, gene, exons 2 and 3
and complete cds
Length = 1276
Score = 184 bits (466), Expect = 2e-45
Identities = 84/93 (90%), Positives = 88/93 (94%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 71 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 250
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVTLS PK VKW +
Sbjct: 251 LYYTEFTPNEKDEYACRVSHVTLSTPKTVKWGK 349
>gb|AF032090.1|ALB2MCG2 Aotus lemurinus beta-2-microglobulin precursor, gene, exon 2
Length = 379
Score = 184 bits (466), Expect = 2e-45
Identities = 84/93 (90%), Positives = 88/93 (94%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 71 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 250
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVTLS PK VKW +
Sbjct: 251 LYYTEFTPNEKDEYACRVSHVTLSTPKTVKWGK 349
>gb|AF068767.1|CAPEB2M2 Callithrix penicillata beta-2-microglobulin precursor (B2m) gene,
exons 2 and 3 and complete cds
Length = 1254
Score = 182 bits (463), Expect = 3e-45
Identities = 83/93 (89%), Positives = 88/93 (94%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP+EKDEYACRV+HVT S PK VKW +
Sbjct: 224 LYYTEFTPSEKDEYACRVSHVTFSTPKTVKWGK 322
>gb|AF032045.1|CAKUB2MP2 Callithrix kuhli beta-2-microglobulin precursor, gene, exons 2 and
3 and complete cds
Length = 1299
Score = 182 bits (463), Expect = 3e-45
Identities = 83/93 (89%), Positives = 88/93 (94%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP+EKDEYACRV+HVT S PK VKW +
Sbjct: 224 LYYTEFTPSEKDEYACRVSHVTFSTPKTVKWGK 322
>gb|AF084623.1|CJB2MG2 Callithrix jacchus beta-2-microglobulin precursor gene, exon 2
Length = 326
Score = 182 bits (463), Expect = 3e-45
Identities = 83/93 (89%), Positives = 88/93 (94%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP+EKDEYACRV+HVT S PK VKW +
Sbjct: 224 LYYTEFTPSEKDEYACRVSHVTFSTPKTVKWGK 322
>gb|AF084620.1|CAB2MG2 Callithrix aurita beta-2-microglobulin precursor gene, exon 2
Length = 326
Score = 182 bits (463), Expect = 3e-45
Identities = 83/93 (89%), Positives = 88/93 (94%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP+EKDEYACRV+HVT S PK VKW +
Sbjct: 224 LYYTEFTPSEKDEYACRVSHVTFSTPKTVKWGK 322
>gb|AF032084.1|PMB2MCG2 Callithrix pygmaea beta-2-microglobulin precursor, gene, exons 2
and 3 and complete cds
Length = 1271
Score = 182 bits (462), Expect = 4e-45
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 66 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 245
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 246 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 344
>gb|AF032087.1|APB2MCG2 Ateles paniscus beta-2-microglobulin precursor, gene, exons 2 and 3
and complete cds
Length = 1420
Score = 182 bits (462), Expect = 4e-45
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 72 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 251
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 252 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 350
>gb|AF068769.1|CAHUB2M2 Callithrix humeralifer beta-2-microglobulin (B2m) gene, exons 2 and
3 and complete cds
Length = 1254
Score = 182 bits (462), Expect = 4e-45
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 224 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 322
>gb|AF032057.1|CPPB2M2 Callicebus personatus personatus beta-2-microglobulin precursor,
gene, exon 2
Length = 1303
Score = 182 bits (462), Expect = 4e-45
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 60 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 239
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 240 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 338
>gb|AF032063.1|CPB2ML2 Callicebus personatus nigrifrons beta-2-microglobulin precursor,
gene, exon 2 and 3 and complete cds
Length = 1303
Score = 182 bits (462), Expect = 4e-45
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 60 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 239
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 240 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 338
>gb|AF032060.1|CPB2MC2 Callicebus personatus nigrifrons beta-2-microglobulin precursor,
gene, exons 2 and 3 and complete cds
Length = 1303
Score = 182 bits (462), Expect = 4e-45
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 60 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 239
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 240 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 338
>gb|AF032069.1|CTB2MCG2 Callicebus torquatus beta-2-microglobulin precursor, gene, exons 2
and 3 and complete cds
Length = 1308
Score = 182 bits (462), Expect = 4e-45
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 60 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 239
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 240 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 338
>gb|AF032042.1|CAEMB2MP2 Callithrix emiliae beta-2-microglobulin precursor, gene, exons 2
and 3 and complete cds
Length = 1299
Score = 182 bits (462), Expect = 4e-45
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 224 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 322
>gb|AF032036.1|LECHB2MP2 Leontopithecus chrysopygus beta-2-microglobulin precursor, gene,
exons 2 and 3 and complete cds
Length = 1349
Score = 182 bits (462), Expect = 4e-45
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 67 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 246
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 247 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 345
>gb|AF032066.1|CMB2MCG2 Callicebus hoffmannsi beta-2-microglobulin, gene, exons 2 and 3 and
complete cds
Length = 1314
Score = 181 bits (459), Expect = 1e-44
Identities = 82/93 (88%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 60 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 239
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP +KDEYACRV+HVT S PK VKW +
Sbjct: 240 LYYTEFTPNDKDEYACRVSHVTFSTPKTVKWGK 338
>gb|AF032039.1|CAGOB2MP2 Callimico goeldii beta-2-microglobulin precursor, gene, exons 2 and
3 and complete cds
Length = 1335
Score = 181 bits (459), Expect = 1e-44
Identities = 82/93 (88%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDW+FYL
Sbjct: 66 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWTFYL 245
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 246 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 344
>gb|AF069326.1|SEG_CAMOB2M2 Callicebus moloch beta-2-microglobulin precursor (B2m) gene, exons
2 and 3 and complete cds
Length = 1257
Score = 181 bits (459), Expect = 1e-44
Identities = 82/93 (88%), Positives = 87/93 (93%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 37 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 216
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP +KDEYACRV+HVT S PK VKW +
Sbjct: 217 LYYTEFTPNDKDEYACRVSHVTFSTPKTVKWGK 315
>gb|AF032018.1|CEOLB2MP2 Cebus olivaceus beta-2-microglobulin precursor, gene, exons 2 and 3
and complete cds
Length = 1318
Score = 180 bits (457), Expect = 2e-44
Identities = 82/93 (88%), Positives = 86/93 (92%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 71 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 250
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 251 LYYTEFTPNEKDEYACRVSHVTFPTPKTVKWGK 349
>gb|AF032048.1|ALSEB2MP2 Alouatta seniculus beta-2-microglobulin precursor, gene, exons 2
and 3 and complete cds
Length = 1415
Score = 180 bits (457), Expect = 2e-44
Identities = 82/93 (88%), Positives = 86/93 (92%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 72 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 251
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 252 LYYTEFTPNEKDEYACRVSHVTFPTPKTVKWGK 350
>gb|AF032021.1|CEALB2MP2 Cebus albifrons beta-2-microglobulin precursor, gene, exon 2
Length = 379
Score = 180 bits (457), Expect = 2e-44
Identities = 82/93 (88%), Positives = 86/93 (92%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 71 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 250
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 251 LYYTEFTPNEKDEYACRVSHVTFPTPKTVKWGK 349
>gb|AF031891.1|CAB2MCG2 Cebus apella beta-2 microglobulin precursor, gene, exon 2
Length = 379
Score = 180 bits (457), Expect = 2e-44
Identities = 82/93 (88%), Positives = 86/93 (92%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 71 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 250
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 251 LYYTEFTPNEKDEYACRVSHVTFPTPKTVKWGK 349
>gb|AF032054.1|LALAB2MP2 Lagothrix lagotricha beta-2-microglobulin precursor, gene, exons 2
and 3 and complete cds
Length = 1410
Score = 180 bits (457), Expect = 2e-44
Identities = 82/93 (88%), Positives = 86/93 (92%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 72 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 251
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 252 LYYTEFTPNEKDEYACRVSHVTFPTPKTVKWGK 350
>gb|AF032078.1|CEB2MCG2 Cacajao melanocephalus beta-2-microglobulin precursor, gene, exons
2 and 3 and complete cds
Length = 1292
Score = 179 bits (454), Expect = 4e-44
Identities = 81/93 (87%), Positives = 86/93 (92%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 68 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 247
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP +KDEYACRV+HVT PK VKW +
Sbjct: 248 LYYTEFTPNDKDEYACRVSHVTFPAPKTVKWGK 346
>gb|AF032033.1|SAIMB2MP2 Saguinus imperator beta-2-microglobulin precursor, gene, exons 2
and 3 and complete cds
Length = 1315
Score = 179 bits (453), Expect = 5e-44
Identities = 81/93 (87%), Positives = 87/93 (93%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+PA+NGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 71 PKIQVYSRYPADNGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 250
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 251 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 349
>gb|AF032024.1|SAMIB2MP2 Saguinus midas midas beta-2-microglobulin precursor, gene, exons 2
and 3 and complete cds
Length = 1286
Score = 179 bits (453), Expect = 5e-44
Identities = 81/93 (87%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+PA+NGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 63 PKIQVYSRYPADNGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 242
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 243 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 341
>gb|AF032030.1|SAOEB2MP2 Saguinus oedipus beta-2-microglobulin precursor, gene, exon 2
Length = 376
Score = 179 bits (453), Expect = 5e-44
Identities = 81/93 (87%), Positives = 87/93 (93%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+PA+NGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 68 PKIQVYSRYPADNGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 247
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 248 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 346
>gb|AF084635.1|SMB2MG2 Saguinus mystax beta-2-microglobulin precursor gene, exon 2
Length = 326
Score = 179 bits (453), Expect = 5e-44
Identities = 81/93 (87%), Positives = 87/93 (93%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+PA+NGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRYPADNGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 224 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 322
>gb|AF084629.1|SBMB2MG2 Saguinus bicolor martinsi beta-2-microglobulin precursor gene, exon
2
Length = 326
Score = 179 bits (453), Expect = 5e-44
Identities = 81/93 (87%), Positives = 87/93 (93%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+PA+NGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRYPADNGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 224 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 322
>gb|AF084626.1|SBBB2MG2 Saguinus bicolor bicolor beta-2-microglobulin precursor gene, exon
2
Length = 326
Score = 179 bits (453), Expect = 5e-44
Identities = 81/93 (87%), Positives = 87/93 (93%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+PA+NGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRYPADNGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 224 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 322
>gb|AF032027.1|SMNIB2MP2 Saguinus midas niger beta-2-microglobulin precursor, gene, exon 2
Length = 377
Score = 179 bits (453), Expect = 5e-44
Identities = 81/93 (87%), Positives = 87/93 (93%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+PA+NGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 69 PKIQVYSRYPADNGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 248
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT S PK VKW +
Sbjct: 249 LYYTEFTPNEKDEYACRVSHVTFSTPKTVKWGK 347
>gb|AF032072.1|PIB2MCG2 Pithecia irrorata beta-2-microglobulin precursor, gene, exons 2 and
3 and complete cds
Length = 1322
Score = 178 bits (451), Expect = 8e-44
Identities = 80/93 (86%), Positives = 86/93 (92%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 72 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 251
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP +KDEYACRV+H+T PK VKW +
Sbjct: 252 LYYTEFTPNDKDEYACRVSHMTFPAPKTVKWGK 350
>gb|AF068763.1|SUB2M2 Saimiri ustus beta-2-microglobulin precursor (B2m), exons 2 and 3
and complete cds
Length = 1265
Score = 177 bits (450), Expect = 1e-43
Identities = 80/93 (86%), Positives = 85/93 (91%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK N+LNCYVSGFHPSDIEVDLLKNG++IE VEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRHPAENGKPNYLNCYVSGFHPSDIEVDLLKNGQKIENVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 224 LYYTEFTPNEKDEYACRVSHVTFPTPKTVKWGK 322
>gb|AF068765.1|SSB2M2 Saimiri sciureus beta-2-microglobulin precursor (B2m) gene, exons 2
and 3 and complete cds
Length = 1265
Score = 177 bits (450), Expect = 1e-43
Identities = 80/93 (86%), Positives = 85/93 (91%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK N+LNCYVSGFHPSDIEVDLLKNG++IE VEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRHPAENGKPNYLNCYVSGFHPSDIEVDLLKNGQKIENVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 224 LYYTEFTPNEKDEYACRVSHVTFPTPKTVKWGK 322
>gb|AF032081.1|SBB2MCG2 Saimiri boliviensis beta-2-microglobulin precursor, gene, exons 2
and 3 and complete cds
Length = 1292
Score = 177 bits (450), Expect = 1e-43
Identities = 80/93 (86%), Positives = 85/93 (91%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK N+LNCYVSGFHPSDIEVDLLKNG++IE VEHSDLSFSKDWSFYL
Sbjct: 71 PKIQVYSRHPAENGKPNYLNCYVSGFHPSDIEVDLLKNGQKIENVEHSDLSFSKDWSFYL 250
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 251 LYYTEFTPNEKDEYACRVSHVTFPTPKTVKWGK 349
>gb|AF032051.1|BRARB2MP2 Brachyteles arachnoides beta-2-microglobulin precursor, gene, exons
2 and 3 and complete cds
Length = 1429
Score = 177 bits (448), Expect = 2e-43
Identities = 81/93 (87%), Positives = 85/93 (91%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLN YVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 72 PKIQVYSRHPAENGKPNFLNSYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 251
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 252 LYYTEFTPNEKDEYACRVSHVTFQTPKTVKWGK 350
>gb|AF032075.1|CSB2MCG2 Chiropotes satanas beta-2-microglobulin precursor, gene, exons 2
and 3 and complete cds
Length = 1336
Score = 176 bits (447), Expect = 2e-43
Identities = 80/93 (86%), Positives = 86/93 (92%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSRHPAENGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 68 PKIQVYSRHPAENGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 247
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP +KDEYACRV+ VT + PK VKW +
Sbjct: 248 LYYTEFTPNDKDEYACRVSDVTFTAPKTVKWGK 346
>gb|AF084632.1|SFB2MG2 Saguinus fuscicollis beta-2-microglobulin precursor gene, exon 2
Length = 326
Score = 176 bits (447), Expect = 2e-43
Identities = 80/93 (86%), Positives = 86/93 (92%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+PA+NGK NFLNCYVSGFHPSDIEVDLLKNG++IEKVEHSDLSFSKDWSFYL
Sbjct: 44 PKIQVYSRYPADNGKPNFLNCYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYL 223
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
LYYTEFTP EKDEYACRV+HVT PK VKW +
Sbjct: 224 LYYTEFTPNEKDEYACRVSHVTFLTPKTVKWGK 322
>emb|X07621.1|HSB2MMU Human mutant (Daudi) beta2 - microglobulin mRNA
Length = 307
Score = 173 bits (438), Expect = 3e-42
Identities = 83/97 (85%), Positives = 84/97 (86%)
Frame = +1
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
+SR GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 16 ISRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 195
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDE 97
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDE
Sbjct: 196 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDE 306
>gb|S54761.1|S54761 beta 2- mu =beta 2-microglobulin [human, SK-MEL-33 cells, mRNA
Mutant, 433 nt]
Length = 433
Score = 170 bits (431), Expect = 2e-41
Identities = 82/95 (86%), Positives = 82/95 (86%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSR GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 26 MSRSVALAVVALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 205
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEK 95
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEK
Sbjct: 206 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEK 310
Score = 57.0 bits (136), Expect = 3e-07
Identities = 29/46 (63%), Positives = 31/46 (67%)
Frame = +1
Query: 74 LSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
L F + F L P K+EYACRVNHVTLSQPKIVKWDRDM
Sbjct: 244 LVFQQGLVFLSLVLH*IHPH*KNEYACRVNHVTLSQPKIVKWDRDM 381
>emb|X69084.1|BTB2MIT B.taurus mRNA for beta 2-microglobulin
Length = 512
Score = 169 bits (429), Expect = 3e-41
Identities = 80/119 (67%), Positives = 91/119 (76%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GL+AIQR PKIQVYSRHP E+GK N+LNCYV GFHP IE+DLL
Sbjct: 11 MARFVALVLLGLLSLSGLDAIQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLL 190
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGE+I K E SDLSFSKDWSFYLL + EFTP KD+Y+CRV HVTL QP+IVKWDRD+
Sbjct: 191 KNGEKI-KSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSCRVKHVTLEQPRIVKWDRDL 364
>emb|X69083.1|ECB2M E.caballus mRNA for beta 2-microglobulin
Length = 605
Score = 169 bits (428), Expect = 4e-41
Identities = 79/119 (66%), Positives = 91/119 (76%)
Frame = +3
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GLEA+ R PK+QVYSRHPAENGK NFLNCYVSGFHP +IE+DLL
Sbjct: 9 MARVVALVLLGLLSLTGLEAVPRVPKVQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLL 188
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGE++ KV+ SDLSFSKDWSFYLL +T+FTP DEY+CRV H TL P IVKWDRD+
Sbjct: 189 KNGEKM-KVDRSDLSFSKDWSFYLLVHTDFTPNGVDEYSCRVQHSTLKDPLIVKWDRDL 362
>gb|L13854.1|PIGMICRO2B Sus scrofa beta 2-microglobulin mRNA, complete cds
Length = 543
Score = 168 bits (425), Expect = 9e-41
Identities = 76/102 (74%), Positives = 87/102 (84%)
Frame = +1
Query: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 76
GL+A+ R PK+QVYSRHPAENGK N+LNCYVSGFHP IE+DLLKNGE++ E SDLSF
Sbjct: 106 GLDAVARPPKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDLLKNGEKM-NAEQSDLSF 282
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRD 118
SKDWSFYLL +TEFTP D+Y+CRV HVTL +PKIVKWDRD
Sbjct: 283 SKDWSFYLLVHTEFTPNAVDQYSCRVKHVTLDKPKIVKWDRD 408
>gb|AF232726.1|AF232726 Marmota monax beta-2-microglobulin mRNA, partial cds
Length = 331
Score = 167 bits (423), Expect = 1e-40
Identities = 76/97 (78%), Positives = 86/97 (88%)
Frame = +3
Query: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 76
GL+A R+PKIQVY+RHPAENGK NFLNCYVSGFHP I++DLLKNG++IEKVE SDLSF
Sbjct: 39 GLDADPRSPKIQVYTRHPAENGKPNFLNCYVSGFHPPQIQIDLLKNGQKIEKVEQSDLSF 218
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIV 113
SKDWSFYLL +TEFTP +KDEYACRV H TL +PKIV
Sbjct: 219 SKDWSFYLLVHTEFTPNDKDEYACRVTHETLKEPKIV 329
>ref|NM_012512.1| Rattus norvegicus Beta-2-microglobulin (B2m), mRNA
Length = 604
Score = 166 bits (420), Expect = 3e-40
Identities = 75/100 (75%), Positives = 85/100 (85%)
Frame = +2
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKD 79
AIQ+TP+IQVYSRHP ENGK NFLNCYVS FHP IE++LLKNG++I +E SDLSFSKD
Sbjct: 65 AIQKTPQIQVYSRHPPENGKPNFLNCYVSQFHPPQIEIELLKNGKKIPNIEMSDLSFSKD 244
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
WSFY+L +TEFTPTE D YACRV HVTL +PK V WDRDM
Sbjct: 245 WSFYILAHTEFTPTETDVYACRVKHVTLKEPKTVTWDRDM 364
>emb|Y00441.1|RNB2MR Rat mRNA for beta-2-microglobulin
Length = 604
Score = 166 bits (420), Expect = 3e-40
Identities = 75/100 (75%), Positives = 85/100 (85%)
Frame = +2
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKD 79
AIQ+TP+IQVYSRHP ENGK NFLNCYVS FHP IE++LLKNG++I +E SDLSFSKD
Sbjct: 65 AIQKTPQIQVYSRHPPENGKPNFLNCYVSQFHPPQIEIELLKNGKKIPNIEMSDLSFSKD 244
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
WSFY+L +TEFTPTE D YACRV HVTL +PK V WDRDM
Sbjct: 245 WSFYILAHTEFTPTETDVYACRVKHVTLKEPKTVTWDRDM 364
>emb|Y08531.1|RNBET2MIC R.norvegicus mRNA for beta 2 microglobulin
Length = 406
Score = 166 bits (420), Expect = 3e-40
Identities = 75/100 (75%), Positives = 85/100 (85%)
Frame = +1
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKD 79
AIQ+TP+IQVYSRHP ENGK NFLNCYVS FHP IE++LLKNG++I +E SDLSFSKD
Sbjct: 70 AIQKTPQIQVYSRHPPENGKPNFLNCYVSQFHPPQIEIELLKNGKKIPNIEMSDLSFSKD 249
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
WSFY+L +TEFTPTE D YACRV HVTL +PK V WDRDM
Sbjct: 250 WSFYILAHTEFTPTETDVYACRVKHVTLKEPKTVTWDRDM 369
>gb|M84365.1|MUSMHMCGBD Mus musculus MHC class I B(2)-microglobulin gene (W4 allele),
partial cds
Length = 360
Score = 164 bits (416), Expect = 1e-39
Identities = 75/119 (63%), Positives = 90/119 (75%)
Frame = +1
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GL AIQ+TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +L
Sbjct: 1 MARSVTLVFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPQIEIQML 180
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNG++I KVE SD+SFSKDWSFY+L +TEFTPTE D YACRV HV++++PK V WDRDM
Sbjct: 181 KNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHVSMAEPKTVYWDRDM 357
>gb|M84367.1|MUSMHMCGBF Mus musculus MHC class I B(2)-microglobulin gene (W5 allele),
complete cds
Length = 360
Score = 164 bits (415), Expect = 1e-39
Identities = 75/119 (63%), Positives = 90/119 (75%)
Frame = +1
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GL AIQ+TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +L
Sbjct: 1 MARSVTLVFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQML 180
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNG++I KVE SD+SFSKDWSFY+L +TEFTPTE D YACRV HV++++PK V WDRDM
Sbjct: 181 KNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHVSMAEPKTVYWDRDM 357
>emb|X57112.1|CGB2MG Hamster mRNA for beta 2-microglobulin
Length = 776
Score = 163 bits (413), Expect = 2e-39
Identities = 71/102 (69%), Positives = 89/102 (86%)
Frame = +3
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
L+AIQR P++QVY+RHP E+GK+NFLNCYVS FHP IE++LLKNG++++KVE SDLSF+
Sbjct: 72 LDAIQRPPQVQVYTRHPPEDGKTNFLNCYVSQFHPPQIEIELLKNGKKMDKVELSDLSFN 251
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KDWSFYLL +TEFTPT D+YACRV H TL +PK+V W+RDM
Sbjct: 252 KDWSFYLLAHTEFTPTATDKYACRVTHTTLKEPKVVTWERDM 377
>gb|M84364.1|MUSMHMCGBC Mus musculus MHC class I B(2)-microglobulin gene (W3 allele),
partial cds
Length = 360
Score = 163 bits (412), Expect = 3e-39
Identities = 75/119 (63%), Positives = 89/119 (74%)
Frame = +1
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GL AIQ+TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +L
Sbjct: 1 MARSVTLIFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQML 180
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGE+I KVE SD+SFSKDWSFY+L +TEFTPTE D YACRV H ++++PK V WDRDM
Sbjct: 181 KNGEKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM 357
>dbj|AK019389.1|AK019389 Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched
library, clone:3010025M23:beta-2 microglobulin, full
insert sequence
Length = 862
Score = 162 bits (411), Expect = 4e-39
Identities = 74/119 (62%), Positives = 89/119 (74%)
Frame = +1
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GL AIQ+TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +L
Sbjct: 55 MARSVTLVFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQML 234
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNG++I KVE SD+SFSKDWSFY+L +TEFTPTE D YACRV H ++++PK V WDRDM
Sbjct: 235 KNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM 411
>gb|AF148875.1|AF148875 Cavia porcellus beta2 microglobulin mRNA, complete cds
Length = 378
Score = 162 bits (410), Expect = 5e-39
Identities = 69/99 (69%), Positives = 86/99 (86%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
++A+ P++QVYSRHPAENGK NF+NCYVSGFHP IEV+LLKNG++I+ VE SDLSFS
Sbjct: 70 VDAVLHAPRVQVYSRHPAENGKQNFINCYVSGFHPPQIEVELLKNGKKIDNVEMSDLSFS 249
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
KDW+FYLL + FTP + DEY+CRV+H+TLS+PKIVKWD
Sbjct: 250 KDWTFYLLVHAAFTPNDSDEYSCRVSHITLSEPKIVKWD 366
>ref|NM_009735.1| Mus musculus beta-2 microglobulin (B2m), mRNA
Length = 647
Score = 161 bits (408), Expect = 8e-39
Identities = 74/119 (62%), Positives = 89/119 (74%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GL AIQ+TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +L
Sbjct: 53 MARSVTLVFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQML 232
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNG++I KVE SD+SFSKDWSFY+L +TEFTPTE D YACRV H ++++PK V WDRDM
Sbjct: 233 KNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM 409
>emb|X01838.1|MMB2MR Mouse mRNA for beta2-microglobulin
Length = 647
Score = 161 bits (408), Expect = 8e-39
Identities = 74/119 (62%), Positives = 89/119 (74%)
Frame = +2
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GL AIQ+TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +L
Sbjct: 53 MARSVTLVFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQML 232
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNG++I KVE SD+SFSKDWSFY+L +TEFTPTE D YACRV H ++++PK V WDRDM
Sbjct: 233 KNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM 409
>dbj|AK020632.1|AK020632 Mus musculus adult male urinary bladder cDNA, RIKEN full-length
enriched library, clone:9530068K07:beta-2 microglobulin,
full insert sequence
Length = 861
Score = 161 bits (407), Expect = 1e-38
Identities = 73/119 (61%), Positives = 89/119 (74%)
Frame = +3
Query: 1 MSRXXXXXXXXXXXXXGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
M+R GL AIQ+TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +L
Sbjct: 54 MARSVTLVFLVLVTLTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQML 233
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNG++I KVE SD+SFSKDWSFY+L +TEFTPTE D YACRV H ++++P+ V WDRDM
Sbjct: 234 KNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPETVYWDRDM 410
>gb|AF452448.1|AF452448 Sus scrofa beta-2-microglobulin protein (B2M) gene, exons 1 through 4
and complete cds
Length = 5688
Score = 152 bits (385), Expect = 4e-36
Identities = 69/91 (75%), Positives = 78/91 (84%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PK+QVYSRHPAENGK N+LNCYVSGFHP IE+DLLKNGE++ E SDLSFSKDWSFYL
Sbjct: 3790 PKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDLLKNGEKM-NAEQSDLSFSKDWSFYL 3966
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TEFTP D+Y+CRV HVTL +PKIVKW
Sbjct: 3967 LAHTEFTPNAVDQYSCRVKHVTLDKPKIVKW 4059
>gb|M84366.1|MUSMHMCGBE Mus musculus MHC class I B(2)-microglobulin gene (W4 allele),
partial cds
Length = 278
Score = 146 bits (369), Expect = 3e-34
Identities = 64/92 (69%), Positives = 77/92 (83%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNG++I KVE SD+SFSKDWSFY
Sbjct: 3 TPQIQVYSRHPPENGKPNILNCYVTQFHPPQIEIQMLKNGKKIPKVEMSDMSFSKDWSFY 182
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L +TEFTPTE D YACRV HV++++PK V W
Sbjct: 183 ILAHTEFTPTETDTYACRVKHVSMAEPKTVYW 278
>gb|L04993.1|MUSBMICROB Mus spretus beta-2-microglobulin gene, partial cds
Length = 278
Score = 146 bits (368), Expect = 4e-34
Identities = 65/91 (71%), Positives = 75/91 (81%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNGE I KVE SDLSFSKDWSFY+
Sbjct: 6 PQIQVYSRHPPENGKPNILNCYVTQFHPPQIEIQMLKNGEIIPKVEMSDLSFSKDWSFYI 185
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TEFTPTE D+YACRVNHV++ +P V W
Sbjct: 186 LAHTEFTPTETDQYACRVNHVSMDKPMTVNW 278
>gb|M84362.1|MUSMHMCGBA Mus spretus MHC class I B(2)-microglobulin gene (W1 allele),
partial cds
Length = 278
Score = 146 bits (368), Expect = 4e-34
Identities = 65/91 (71%), Positives = 75/91 (81%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNGE I KVE SDLSFSKDWSFY+
Sbjct: 6 PQIQVYSRHPPENGKPNILNCYVTQFHPPQIEIQMLKNGEIIPKVEMSDLSFSKDWSFYI 185
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TEFTPTE D+YACRVNHV++ +P V W
Sbjct: 186 LAHTEFTPTETDQYACRVNHVSMDKPMTVNW 278
>gb|L04994.1|MUSBMICROC Mus spretus germline beta-2-microglobulin gene (haplotype: B2mw1),
partial cds
Length = 278
Score = 146 bits (368), Expect = 4e-34
Identities = 65/91 (71%), Positives = 75/91 (81%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNGE I KVE SDLSFSKDWSFY+
Sbjct: 6 PQIQVYSRHPPENGKPNILNCYVTQFHPPQIEIQMLKNGEIIPKVEMSDLSFSKDWSFYI 185
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TEFTPTE D+YACRVNHV++ +P V W
Sbjct: 186 LAHTEFTPTETDQYACRVNHVSMDKPMTVNW 278
>gb|L04992.1|MUSBMICROA Mus spretus germline beta-2-microglobulin gene (haplotype: B2mw1),
partial cds
Length = 278
Score = 146 bits (368), Expect = 4e-34
Identities = 65/91 (71%), Positives = 75/91 (81%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNGE I KVE SDLSFSKDWSFY+
Sbjct: 6 PQIQVYSRHPPENGKPNILNCYVTQFHPPQIEIQMLKNGEIIPKVEMSDLSFSKDWSFYI 185
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TEFTPTE D+YACRVNHV++ +P V W
Sbjct: 186 LAHTEFTPTETDQYACRVNHVSMDKPMTVNW 278
>gb|L05578.1|MUSZYD Mus spicilegus beta-2 microglobulin gene
Length = 278
Score = 145 bits (367), Expect = 5e-34
Identities = 66/91 (72%), Positives = 76/91 (82%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNG+ I KVE SDLSFSKDWSFY+
Sbjct: 6 PQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKVIPKVEMSDLSFSKDWSFYI 185
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TEFTPTE D YACRVNHV+L++PK V W
Sbjct: 186 LAHTEFTPTETDTYACRVNHVSLTEPKTVFW 278
>gb|J00363.1|MUSB2M2 mouse beta-2-microglobulin gene(seg 2)
Length = 376
Score = 144 bits (362), Expect = 2e-33
Identities = 63/94 (67%), Positives = 77/94 (81%)
Frame = +1
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNG++I KVE SD+SFSKDWSFY
Sbjct: 43 TPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFY 222
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L +TEFTPTE D YACRV H ++++PK V W +
Sbjct: 223 ILAHTEFTPTETDTYACRVKHDSMAEPKTVYWGK 324
>gb|L05579.1|MUSPAH Mus pahari beta-2 microglobulin gene
Length = 278
Score = 144 bits (362), Expect = 2e-33
Identities = 62/92 (67%), Positives = 76/92 (82%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
+P++QVY+RHP ENGK NFLNCYVS FHP IE+++LKNGE+I VE SDLSFSKDWSFY
Sbjct: 3 SPQVQVYTRHPPENGKPNFLNCYVSQFHPPQIEIEILKNGEKINNVEMSDLSFSKDWSFY 182
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L +TEFTP+ D YACRV HV++ +PK V W
Sbjct: 183 ILAHTEFTPSATDTYACRVKHVSMKEPKTVIW 278
>gb|M84363.1|MUSMHMCGBB Mus muscculus MHC class I B(2)-microglobulin gene (W2 allele),
partial cds
Length = 278
Score = 144 bits (362), Expect = 2e-33
Identities = 63/92 (68%), Positives = 76/92 (82%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNG++I KVE SD+SFSKDWSFY
Sbjct: 3 TPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFY 182
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L +TEFTPTE D YAC V HV++++PK V W
Sbjct: 183 ILAHTEFTPTETDTYACTVKHVSMAEPKTVYW 278
>gb|L05899.1|MUSB2MICR Mus spretoides beta-2-microglobulin related DNA sequence
Length = 278
Score = 143 bits (361), Expect = 2e-33
Identities = 65/91 (71%), Positives = 74/91 (80%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNGE I KVE SDLSFSKDWSFY+
Sbjct: 6 PQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGEIIPKVEMSDLSFSKDWSFYI 185
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TEFTPTE D YACRVNHV++ +P V W
Sbjct: 186 LAHTEFTPTETDTYACRVNHVSMDKPMTVFW 278
>gb|L04989.1|MUSKARB2MG Mus caroli beta-2-microglobulin gene, partial cds
Length = 278
Score = 142 bits (359), Expect = 4e-33
Identities = 60/92 (65%), Positives = 77/92 (83%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
+P+IQVY+RHP ENGK N LNCYVS FHP IE+++LKNG++I ++E SDLSFSKDWSFY
Sbjct: 3 SPQIQVYTRHPPENGKPNILNCYVSQFHPPHIEIEMLKNGKKIPEIEMSDLSFSKDWSFY 182
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L +TEFTPT+ D Y+CRV HV++ +PK V W
Sbjct: 183 ILAHTEFTPTDSDTYSCRVTHVSMKEPKTVNW 278
>gb|L04988.1|MUSCRPB2MG Mus cervicolor beta-2-microglobulin gene, partial cds
Length = 278
Score = 140 bits (354), Expect = 1e-32
Identities = 61/91 (67%), Positives = 76/91 (83%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P+IQVY+RHP ENGK N LNCYVS FHP IE+++LKNG++I ++E SDLSFSKDWSFY+
Sbjct: 6 PQIQVYTRHPPENGKPNILNCYVSQFHPPHIEIEILKNGKKIPEIEMSDLSFSKDWSFYI 185
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TE TPTE D +ACRV HV+L++PK V W
Sbjct: 186 LAHTEITPTESDTFACRVKHVSLNEPKTVIW 278
>gb|L05580.1|MUSPTX Mus platythrix beta-2 microglobulin gene
Length = 278
Score = 139 bits (351), Expect = 3e-32
Identities = 61/92 (66%), Positives = 75/92 (81%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
+P++QVYSRHP ENGK NFLNCYVS FHP IE+++LKNG+++ VE SDLSFS DWSFY
Sbjct: 3 SPQVQVYSRHPPENGKPNFLNCYVSQFHPPQIEIEMLKNGKKMTTVELSDLSFSNDWSFY 182
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TEFTP+E D YACRV HV++ +PK V W
Sbjct: 183 TLAHTEFTPSETDIYACRVKHVSMKEPKTVIW 278
>gb|L05581.1|MUSCOK Mus cooki beta-2 microglobulin gene
Length = 278
Score = 139 bits (349), Expect = 6e-32
Identities = 59/91 (64%), Positives = 75/91 (81%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P+IQVY+RHP ENGK N LNCYVS FHP IE+++LKNG++I ++E SDLSFSKDWSFY+
Sbjct: 6 PQIQVYTRHPPENGKPNILNCYVSQFHPPHIEIEILKNGKKIPEIEMSDLSFSKDWSFYI 185
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L +TE TPTE D ++CRV HV++ +PK V W
Sbjct: 186 LAHTEITPTESDTFSCRVKHVSMKEPKTVVW 278
>gb|AF191646.2|AF191646 Trichosurus vulpecula beta-2 microglobulin (B2MG) mRNA, complete
cds
Length = 1213
Score = 134 bits (337), Expect = 1e-30
Identities = 57/99 (57%), Positives = 74/99 (74%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
L+AI +PK+QVYSRHP ++ K NF+NC+VSGFHP I ++L K+GE+I KVE SDLSFS
Sbjct: 85 LDAITSSPKVQVYSRHPVDSNKENFVNCFVSGFHPPQITIELSKDGEKIPKVEESDLSFS 264
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
DW+F L F P + EY C+V H+TL +PK+VKWD
Sbjct: 265 NDWTFNRLVSAPFDPNSRSEYTCKVTHLTLQEPKVVKWD 381
>gb|U26663.1|RNU26663 Rattus norvegicus prostaglandin F2a receptor mRNA, complete cds
Length = 2920
Score = 134 bits (336), Expect = 2e-30
Identities = 62/92 (67%), Positives = 72/92 (77%)
Frame = -2
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKD 79
AIQ+TP+IQVYSRHP ENGK NFLNCYVS FHP IE++LLKNG++I +E SDLSFSKD
Sbjct: 543 AIQKTPQIQVYSRHPPENGKPNFLNCYVSQFHPPQIEIELLKNGKKIPNIEMSDLSFSKD 364
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPK 111
WSFY+L +TEFTPTE D Y +N PK
Sbjct: 363 WSFYILAHTEFTPTETDVYLAELNTSL*RSPK 268
Score = 38.9 bits (89), Expect = 0.079
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -1
Query: 99 ACRVNHVTLSQPKIVKWDRDM 119
+CRV HVTL +PK V WDRDM
Sbjct: 307 SCRVKHVTLKEPKTVTWDRDM 245
>gb|AY057803.1| Mus minutoides beta-2-microglobulin (B2m) gene, exon 2 and
partial cds
Length = 230
Score = 124 bits (311), Expect = 1e-27
Identities = 55/76 (72%), Positives = 65/76 (85%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
+P +QVYSRHP ENGK NFLNCYVS FHP IE+++LKNG+++ KVE SDLSFSKDWSFY
Sbjct: 3 SPHVQVYSRHPPENGKPNFLNCYVSQFHPPHIEIEILKNGKKMNKVEMSDLSFSKDWSFY 182
Query: 84 LLYYTEFTPTEKDEYA 99
+L +TEFTPTE D YA
Sbjct: 183ILAHTEFTPTETDVYA 230
>gb|AY057801.1| Mus musculus molossinus beta-2-microglobulin (B2m) gene, exon 2
and partial cds
Length = 230
Score = 123 bits (309), Expect = 2e-27
Identities = 55/76 (72%), Positives = 64/76 (83%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNG++I KVE SD+SFSKDWSFY
Sbjct: 3 TPQIQVYSRHPPENGKPNILNCYVTQFHPPQIEIQMLKNGKKIPKVEMSDMSFSKDWSFY 182
Query: 84 LLYYTEFTPTEKDEYA 99
+L +TEFTPTE D YA
Sbjct: 183ILAHTEFTPTETDTYA 230
>gb|AY057800.1| Mus musculus musculus beta-2-microglobulin (B2m) gene, exon 2 and
partial cds
Length = 230
Score = 123 bits (308), Expect = 3e-27
Identities = 55/76 (72%), Positives = 64/76 (83%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TP+IQVYSRHP ENGK N LNCYV+ FHP IE+ +LKNG++I KVE SD+SFSKDWSFY
Sbjct: 3 TPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFY 182
Query: 84 LLYYTEFTPTEKDEYA 99
+L +TEFTPTE D YA
Sbjct: 183ILAHTEFTPTETDTYA 230
>gb|AY057802.1| Mus saxicola beta-2-microglobulin (B2m) gene, exon 2 and partial
cds
Length = 230
Score = 117 bits (293), Expect = 2e-25
Identities = 52/76 (68%), Positives = 63/76 (82%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
+P++QVYSRHP ENGK NFLNCYVS FHP IE+++LKNG+++ VE SDLSFS DWSFY
Sbjct: 3 SPQVQVYSRHPPENGKPNFLNCYVSQFHPPQIEIEMLKNGKKMTTVELSDLSFSNDWSFY 182
Query: 84 LLYYTEFTPTEKDEYA 99
L +TEFTP+E D YA
Sbjct: 183TLAHTEFTPSETDIYA 230
>gb|M84767.1|CHKMHC1AB Chicken MHC class I beta-2-microglobulin, complete cds
Length = 430
Score = 114 bits (285), Expect = 1e-24
Identities = 48/100 (48%), Positives = 67/100 (67%)
Frame = +1
Query: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 76
GL TPK+QVYSR PA G N LNC+ +GFHP I + L+K+G +E ++SD+SF
Sbjct: 91 GLAQADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSF 270
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
+ DW+F L + +FTP+ YAC+V H TL +P++ KWD
Sbjct: 271 NDDWTFQRLVHADFTPSSGSTYACKVEHETLKEPQVYKWD 390
>emb|Z48921.1|GGB2MGBMR G.gallus mRNA for beta2-microglobulin
Length = 1038
Score = 114 bits (285), Expect = 1e-24
Identities = 48/100 (48%), Positives = 67/100 (67%)
Frame = +3
Query: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 76
GL TPK+QVYSR PA G N LNC+ +GFHP I + L+K+G +E ++SD+SF
Sbjct: 69 GLAQADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSF 248
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
+ DW+F L + +FTP+ YAC+V H TL +P++ KWD
Sbjct: 249 NDDWTFQRLVHADFTPSSGSTYACKVEHETLKEPQVYKWD 368
>gb|AF016041.1|AF016041 Ictalurus punctatus beta-2 microglobulin precursor (b2m) mRNA,
complete cds
Length = 1170
Score = 111 bits (277), Expect = 1e-23
Identities = 53/100 (53%), Positives = 65/100 (65%)
Frame = +3
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKD 79
A + PKIQVYSR+P E GK N L C+VS FHP DI +DLLKNGE I E +DL+F K
Sbjct: 117 AKESPPKIQVYSRNPGEFGKENTLICHVSDFHPPDITIDLLKNGEVIPNAEQTDLAFEKG 296
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
W F+L FTPT D++ CRV H L + K + W+ DM
Sbjct: 297 WKFHLTKSVSFTPTSNDKFTCRVRH--LKETKNISWEPDM 410
>emb|Z48922.1|GGB2MGB5 G.gallus gene for beta-2 microglobulin (clone RG5)
Length = 3586
Score = 110 bits (274), Expect = 3e-23
Identities = 45/92 (48%), Positives = 64/92 (68%)
Frame = +1
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TPK+QVYSR PA G N LNC+ +GFHP I + L+K+G +E ++SD+SF+ DW+F
Sbjct: 790 TPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSFNDDWTFQ 969
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L + +FTP+ YAC+V H TL +P++ KW
Sbjct: 970 RLVHADFTPSSGSTYACKVEHETLKEPQVYKW 1065
>emb|Z48931.1|GGB2MGB6 G.gallus gene for beta-2 microglobulin (clone RG6)
Length = 3609
Score = 110 bits (274), Expect = 3e-23
Identities = 45/92 (48%), Positives = 64/92 (68%)
Frame = +2
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TPK+QVYSR PA G N LNC+ +GFHP I + L+K+G +E ++SD+SF+ DW+F
Sbjct: 797 TPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSFNDDWTFQ 976
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L + +FTP+ YAC+V H TL +P++ KW
Sbjct: 977 RLVHADFTPSSGSTYACKVEHETLKEPQVYKW 1072
>gb|AF016043.1|AF016043 Ictalurus lupus beta-2 microglobulin precursor (B2m) gene, partial
cds
Length = 1520
Score = 107 bits (266), Expect = 2e-22
Identities = 50/93 (53%), Positives = 61/93 (64%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+P E GK N L C+VS FHP DI +DLLKNGE I E +DL+F K W F+L
Sbjct: 1124 PKIQVYSRNPGEFGKENTLICHVSDFHPPDITIDLLKNGEVIPNAEQTDLAFEKGWKFHL 1303
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
FTPT D++ CRV H L + K + W +
Sbjct: 1304 TKSVSFTPTSNDKFTCRVRH--LKETKNISWGK 1396
>gb|AF016042.1|AF016042 Ictalurus punctatus beta-2 microglobulin precursor (B2m) gene,
complete cds
Length = 2098
Score = 107 bits (266), Expect = 2e-22
Identities = 50/93 (53%), Positives = 61/93 (64%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+P E GK N L C+VS FHP DI +DLLKNGE I E +DL+F K W F+L
Sbjct: 942 PKIQVYSRNPGEFGKENTLICHVSDFHPPDITIDLLKNGEVIPNAEQTDLAFEKGWKFHL 1121
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
FTPT D++ CRV H L + K + W +
Sbjct: 1122 TKSVSFTPTSNDKFTCRVRH--LKETKNISWGK 1214
>gb|AF022958.1|AF022958 Ictalurus furcatus beta-2 microglobulin precursor (B2m) gene, partial
cds
Length = 1540
Score = 105 bits (261), Expect = 9e-22
Identities = 49/93 (52%), Positives = 61/93 (64%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+P E GK+N L C+VS FHP DI ++LLKNGE I E +DL+F K W F+L
Sbjct: 1142 PKIQVYSRNPGEFGKANTLICHVSDFHPPDITIELLKNGEVIPNAEQTDLAFEKGWKFHL 1321
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
FTPT D++ CRV H L K + W +
Sbjct: 1322 TKSVSFTPTSSDKFTCRVRH--LKDTKNISWGK 1414
>gb|AF016044.1|AF016044 Ictalurus pricei beta-2 microglobulin precursor (B2m) gene, partial
cds
Length = 1521
Score = 104 bits (260), Expect = 1e-21
Identities = 49/93 (52%), Positives = 60/93 (63%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PKIQVYSR+P E GK N L C+VS FHP DI +DLLKNG I E +DL+F K W F+L
Sbjct: 1125 PKIQVYSRNPGEFGKENTLICHVSDFHPPDITIDLLKNGAVIPNAEQTDLAFEKGWKFHL 1304
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
FTPT D++ CRV H L + K + W +
Sbjct: 1305 TKSVSFTPTSNDKFTCRVRH--LKETKNISWGK 1397
>gb|AF221077.1|AF221077 Gallus gallus strain breed Leghorn beta-2 microglobulin mRNA,
partial cds
Length = 310
Score = 104 bits (260), Expect = 1e-21
Identities = 45/94 (47%), Positives = 62/94 (65%)
Frame = +1
Query: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 76
GL TPK+QVYSR PA G N LNC+ +GFHP I + L+K+G +E ++SD+SF
Sbjct: 25 GLAQADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSF 204
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQP 110
+ DW+F L + +FTP+ YAC+V H TL +P
Sbjct: 205 NDDWTFQRLVHADFTPSSGSTYACKVEHETLKEP 306
>gb|AF221076.1|AF221076 Gallus gallus strain breed Fayoumi beta-2 microglobulin mRNA,
partial cds
Length = 310
Score = 104 bits (260), Expect = 1e-21
Identities = 45/94 (47%), Positives = 62/94 (65%)
Frame = +1
Query: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 76
GL TPK+QVYSR PA G N LNC+ +GFHP I + L+K+G +E ++SD+SF
Sbjct: 25 GLAQADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSF 204
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQP 110
+ DW+F L + +FTP+ YAC+V H TL +P
Sbjct: 205 NDDWTFQRLVHADFTPSSGSTYACKVEHETLKEP 306
>gb|AF022959.1|AF022959 Ameiurus natalis beta-2 microglobulin precursor (B2m) gene, partial
cds
Length = 1446
Score = 103 bits (258), Expect = 2e-21
Identities = 51/93 (54%), Positives = 58/93 (61%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PK QVYSR+P E GK N L C VS FHP DIE+DLLKNGE I + +DL+F K W F+L
Sbjct: 1055 PKTQVYSRNPGEFGKENTLICRVSDFHPPDIEIDLLKNGEVIPGAKQTDLAFEKGWKFHL 1234
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
FTPT D Y CRV H L KI W +
Sbjct: 1235 TKSVTFTPTSSDRYVCRVRH--LKTEKIFTWGK 1327
>gb|L63533.1|ONHB2MD Oncorhynchus mykiss (clone Jb-6) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 948
Score = 103 bits (257), Expect = 3e-21
Identities = 48/102 (47%), Positives = 63/102 (61%)
Frame = +2
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+ A + PK+QVYSR+P ++GK N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 134 INAKESPPKVQVYSRNPGQHGKDNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 313
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 314 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 433
>gb|AF022960.1|AF022960 Ameiurus catus beta-2 microglobulin precursor (B2m) gene, partial cds
Length = 1411
Score = 103 bits (256), Expect = 3e-21
Identities = 50/93 (53%), Positives = 59/93 (62%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PK QVYSR+P E GK N L C+VS FHP DIE+DLLKNG I + +DL+F K W F+L
Sbjct: 1020 PKTQVYSRNPGEFGKENTLICHVSDFHPPDIEIDLLKNGAVIPGAKQTDLAFEKGWKFHL 1199
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
EFTPT D +ACRV H L K W +
Sbjct: 1200 TKSVEFTPTSGDSFACRVRH--LKNEKTYTWGK 1292
>gb|AF180485.1|AF180485 Salmo salar clone BA7 beta-2 microglobulin (B2m) mRNA, complete cds
Length = 1072
Score = 102 bits (254), Expect = 6e-21
Identities = 48/102 (47%), Positives = 63/102 (61%)
Frame = +3
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+ A + PK+QVYSR+P E+GK N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 111 INAKESPPKVQVYSRNPGEHGKDNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 290
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ +M
Sbjct: 291 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWESNM 410
>gb|AF180480.1|AF180480 Salmo salar clone BA14 beta-2 microglobulin (B2m) mRNA, partial cds
Length = 831
Score = 102 bits (254), Expect = 6e-21
Identities = 48/102 (47%), Positives = 63/102 (61%)
Frame = +2
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+ A + PK+QVYSR+P E+GK N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 47 INAKESPPKVQVYSRNPGEHGKDNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 226
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ +M
Sbjct: 227 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWESNM 346
>gb|AF180488.1|AF180488 Salmo salar clone BD3 beta-2 microglobulin (B2m) mRNA, complete cds
Length = 883
Score = 102 bits (254), Expect = 6e-21
Identities = 48/102 (47%), Positives = 63/102 (61%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+ A + PK+QVYSR+P E+GK N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 94 INAKESPPKVQVYSRNPGEHGKDNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 273
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ +M
Sbjct: 274 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWESNM 393
>gb|AF180487.1|AF180487 Salmo salar clone BD2 beta-2 microglobulin (B2m) mRNA, complete cds
Length = 913
Score = 102 bits (254), Expect = 6e-21
Identities = 48/102 (47%), Positives = 63/102 (61%)
Frame = +2
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+ A + PK+QVYSR+P E+GK N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 110 INAKESPPKVQVYSRNPGEHGKDNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 289
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ +M
Sbjct: 290 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWESNM 409
>gb|AF180484.1|AF180484 Salmo salar clone BA6 beta-2 microglobulin (B2m) mRNA, complete cds
Length = 861
Score = 102 bits (254), Expect = 6e-21
Identities = 48/102 (47%), Positives = 63/102 (61%)
Frame = +2
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+ A + PK+QVYSR+P E+GK N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 71 INAKESPPKVQVYSRNPGEHGKDNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 250
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ +M
Sbjct: 251 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWESNM 370
>gb|L63539.1|ONHM2MJ Oncorhynchus mykiss (clone Jb-12) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 842
Score = 102 bits (253), Expect = 8e-21
Identities = 47/102 (46%), Positives = 63/102 (61%)
Frame = +2
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+ A + PK+QVYSR+P ++GK N L C+VSGFHP DI + LL+NG I + +DL+F
Sbjct: 92 INAKESPPKVQVYSRNPGQHGKDNTLICHVSGFHPPDISIQLLENGVEIPDAKQTDLAFE 271
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 272 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 391
>gb|AF180483.1|AF180483 Salmo salar clone BA5 beta-2 microglobulin (B2m) mRNA, partial cds
Length = 914
Score = 101 bits (251), Expect = 1e-20
Identities = 47/95 (49%), Positives = 60/95 (62%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PK+QVYSR+P E+GK N L C+VSGFHP DI + LLKNG I + +DL+F + W F+L
Sbjct: 2 PKVQVYSRNPGEHGKDNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFEQGWQFHL 181
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
FTP +EY CRV H L K W+ +M
Sbjct: 182 TKSVGFTPDSGEEYTCRVRH--LKNLKTYTWESNM 280
>gb|L63535.1|ONHB2MF Oncorhynchus mykiss (clone Jb-8) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 1188
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +3
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 54 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 233
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 234 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 353
>gb|L63537.1|ONHB2MH Oncorhynchus mykiss (clone Jb-10) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 739
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 112 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 291
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 292 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 411
>gb|L49056.1|ONHMHB2M Oncorhynchus mykiss beta-2 microglobulin mRNA, complete cds
Length = 881
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +2
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 110 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 289
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 290 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 409
>gb|L47354.1|ONHB2M Oncorhynchus mykiss (clone Jb-1) beta-2 microglobin (b2m) mRNA,
complete cds
Length = 830
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 115 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 294
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 295 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 414
>gb|L63532.1|ONHB2MC Oncorhynchus mykiss (clone Jb-5) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 1105
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 166 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 345
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 346 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 465
>gb|L63538.1|ONHB2MI Oncorhynchus mykiss (clone Jb-11) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 1241
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 118 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 297
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 298 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 417
>gb|L63534.1|ONHB2ME Oncorhynchus mykiss (clone Jb-7) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 1240
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 106 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 285
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 286 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 405
>gb|L63530.1|ONHB2MA Oncorhynchus mykiss (clone Jb-3) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 1240
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 118 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 297
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 298 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 417
>gb|L63536.1|ONHB2MG Oncorhynchus mykiss (clone Jb-9) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 1247
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +2
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 119 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 298
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 299 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 418
>gb|L63531.1|ONHB2MB Oncorhynchus mykiss (clone Jb-4) beta-2 microglobulin (B2m) mRNA,
complete cds
Length = 797
Score = 100 bits (249), Expect = 2e-20
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +3
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+EA + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 84 VEAKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 263
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 264 QGWQFHLTKSVGFTPASGEEYTCRVRH--LKNLKTYTWEADM 383
>emb|AJ132766.1|ABA132766 Acipenser baeri mRNA for beta2-microglobulin
Length = 369
Score = 99.4 bits (246), Expect = 5e-20
Identities = 46/101 (45%), Positives = 63/101 (61%)
Frame = +1
Query: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSK 78
+A + PK+Q+YSR+ E GK N L C+VSGFHP +I++ LLKN IE + SDL+F +
Sbjct: 64 DATEAMPKVQIYSRNVGELGKPNTLICHVSGFHPPNIKLQLLKNDVEIEGAQQSDLAFHQ 243
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
W F+L FTP E + Y+C+V H TL + W DM
Sbjct: 244 GWHFHLTKSVAFTPKEGEHYSCKVEHSTLREATRFTWTPDM 366
>gb|AF180490.1|AF180490 Salmo salar clone BE7 beta-2 microglobulin (B2m) mRNA, complete cds
Length = 1284
Score = 99.0 bits (245), Expect = 6e-20
Identities = 47/102 (46%), Positives = 61/102 (59%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+E+ + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 112 VESKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 291
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 292 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWEADM 411
>gb|AF180478.1|AF180478 Salmo salar clone BA1 beta-2 microglobulin (B2m) mRNA, complete cds
Length = 1279
Score = 99.0 bits (245), Expect = 6e-20
Identities = 47/102 (46%), Positives = 61/102 (59%)
Frame = +3
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+E+ + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 120 VESKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 299
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 300 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWEADM 419
>gb|AF180486.1|AF180486 Salmo salar clone BD1 beta-2 microglobulin (B2m) mRNA, complete cds
Length = 1267
Score = 99.0 bits (245), Expect = 6e-20
Identities = 47/102 (46%), Positives = 61/102 (59%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+E+ + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 106 VESKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 285
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 286 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWEADM 405
>gb|AF180479.1|AF180479 Salmo salar clone BA11 beta-2 microglobulin (B2m) mRNA, complete
cds
Length = 1263
Score = 99.0 bits (245), Expect = 6e-20
Identities = 47/102 (46%), Positives = 61/102 (59%)
Frame = +2
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+E+ + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 107 VESKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 286
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 287 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWEADM 406
>gb|AF180481.1|AF180481 Salmo salar clone BA15 beta-2 microglobulin (B2m) mRNA, complete
cds
Length = 1273
Score = 99.0 bits (245), Expect = 6e-20
Identities = 47/102 (46%), Positives = 61/102 (59%)
Frame = +3
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+E+ + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 108 VESKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 287
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 288 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWEADM 407
>gb|AF180482.1|AF180482 Salmo salar clone BA2 beta-2 microglobulin (B2m) mRNA, complete cds
Length = 1066
Score = 99.0 bits (245), Expect = 6e-20
Identities = 47/102 (46%), Positives = 61/102 (59%)
Frame = +3
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+E+ + PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F
Sbjct: 120 VESKESPPKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFE 299
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ W F+L FTP +EY CRV H L K W+ DM
Sbjct: 300 QGWQFHLTKSVGFTPDSGEEYTCRVRH--LKNLKTYTWEADM 419
>gb|L05383.1|ZEFB2MICA Brachydanio rerio beta-2-microglobulin mRNA, complete cds
Length = 1078
Score = 98.6 bits (244), Expect = 8e-20
Identities = 45/96 (46%), Positives = 59/96 (60%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TPK+ VYS P E GK N L CYVS FHP DI ++LLKNG+ + + +DL+F K W F+
Sbjct: 111 TPKVHVYSHFPGEYGKPNTLICYVSSFHPPDISIELLKNGQVMSDTKQTDLAFEKGWQFH 290
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
L FTP + DEY C V H + + K W+ +M
Sbjct: 291 LTKSVAFTPEKGDEYTCSVRH--MKETKKFSWEPNM 392
>gb|AF180489.1|AF180489 Salmo salar clone BD4 beta-2 microglobulin (B2m) mRNA, partial cds
Length = 1170
Score = 97.4 bits (241), Expect = 2e-19
Identities = 46/95 (48%), Positives = 57/95 (59%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PK+QVYSR+P G N L C+VSGFHP DI + LLKNG I + +DL+F + W F+L
Sbjct: 20 PKVQVYSRNPGNFGDKNTLICHVSGFHPPDISIQLLKNGVEIPDAKQTDLAFEQGWQFHL 199
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
FTP +EY CRV H L K W+ DM
Sbjct: 200 TKSVGFTPDSGEEYTCRVRH--LKNLKTYTWEADM 298
>gb|L05384.1|ZEFB2MICB Brachydanio rerio beta-2-microglobulin gene, complete cds
Length = 2201
Score = 96.3 bits (238), Expect = 4e-19
Identities = 44/92 (47%), Positives = 56/92 (60%)
Frame = +1
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
TPK+ VYS P E GK N L CYVS FHP DI ++LLKNG+ + + +DL+F K W F+
Sbjct: 916 TPKVHVYSHFPGEYGKPNTLICYVSSFHPPDISIELLKNGQVMSDTKQTDLAFEKGWQFH 1095
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L FTP + DEY C V H + + K W
Sbjct: 1096 LTKSVAFTPEKGDEYTCSVRH--MKETKKFSW 1185
>emb|AJ133655.1|ABA133655 Acipenser baeri B2m/b2 gene, exons 1-3
Length = 2478
Score = 95.5 bits (236), Expect = 7e-19
Identities = 44/91 (48%), Positives = 58/91 (63%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PK+Q+YSR+ E GK N L C+VSGFHP +I++ LLKN IE + SDL+F + W F+L
Sbjct: 1675 PKVQIYSRNVGELGKPNTLICHVSGFHPPNIKLQLLKNDVEIEGAQQSDLAFHQGWHFHL 1854
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
FTP E + Y+C+V H TL K W
Sbjct: 1855 TKSVAFTPKEGEHYSCKVEHSTLRGAKSFTW 1947
>emb|AJ133652.1|ABA133652 Acipenser baeri B2m/a1 gene, exons 1-3
Length = 2646
Score = 94.4 bits (233), Expect = 2e-18
Identities = 43/91 (47%), Positives = 58/91 (63%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PK+Q+YSR+ E GK N L C+VSGFHP +I++ LLKN IE + SDL+F + W F+L
Sbjct: 1850 PKVQIYSRNVGELGKPNTLICHVSGFHPPNIKLQLLKNDVEIEGAQQSDLAFHQGWHFHL 2029
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
FTP E + Y+C+V H TL + W
Sbjct: 2030 TKSVAFTPKEGEHYSCKVEHSTLREATRFTW 2122
>emb|AJ133653.1|ABA133653 Acipenser baeri B2m/a2 gene, exons 1-3
Length = 2586
Score = 94.4 bits (233), Expect = 2e-18
Identities = 43/91 (47%), Positives = 58/91 (63%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PK+Q+YSR+ E GK N L C+VSGFHP +I++ LLKN IE + SDL+F + W F+L
Sbjct: 1769 PKVQIYSRNVGELGKPNTLICHVSGFHPPNIKLQLLKNDVEIEGAQQSDLAFHQGWHFHL 1948
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
FTP E + Y+C+V H TL + W
Sbjct: 1949 TKSVAFTPKEGEHYSCKVEHSTLREATRFTW 2041
>gb|L05536.1|CYIB2MGLB Cyprinius carpio beta2-microglobulin mRNA, complete cds
Length = 1095
Score = 94.4 bits (233), Expect = 2e-18
Identities = 43/96 (44%), Positives = 58/96 (59%)
Frame = +1
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFY 83
+PK+QVYS P E GK N L C+VSGFHP DI ++LLK+GE + + +DL+F K W F+
Sbjct: 91 SPKVQVYSHFPGEYGKENTLICHVSGFHPPDITIELLKDGEILPNTQQTDLAFEKGWQFH 270
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
L F P YAC V H ++ I W+ +M
Sbjct: 271 LTKSVTFKPERGQNYACSVRH--MNNKNIYSWEPNM 372
>emb|Z54151.1|BIB2MGLOB B.intermedius mRNA for beta-2-microgobulin
Length = 351
Score = 92.8 bits (229), Expect = 5e-18
Identities = 44/102 (43%), Positives = 62/102 (60%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
++A +PK+QVYS P E GK N L C+VSGFHP DI ++LL+NGE + + +DL+F
Sbjct: 49 VQAKTSSPKVQVYSHFPGEYGKENTLICHVSGFHPPDITIELLRNGEILPNTQQTDLAFE 228
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
K F+L FTP +YAC+V H +S W+ +M
Sbjct: 229 KGRQFHLTKSVSFTPERGLDYACKVRH--MSNTNAYSWEPNM 348
>emb|AJ133654.1|ABA133654 Acipenser baeri B2m/b1 gene, exons 1-3
Length = 2480
Score = 92.4 bits (228), Expect = 6e-18
Identities = 43/91 (47%), Positives = 57/91 (62%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
PK+Q+YSR+ E GK N L C+VSGF P +I++ LLKN IE + SDL+F + W F+L
Sbjct: 1677 PKVQIYSRNVGELGKPNTLICHVSGFQPPNIKLQLLKNDVEIEGAQQSDLAFHQGWHFHL 1856
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
FTP E + Y+C+V H TL K W
Sbjct: 1857 TKSVAFTPKEGEHYSCKVEHSTLRGAKSFTW 1949
>emb|AJ132752.1|GMO132752 Gadus morhua mRNA for beta2-microglobulin, clone b3
Length = 1097
Score = 91.3 bits (225), Expect = 1e-17
Identities = 40/102 (39%), Positives = 65/102 (63%)
Frame = +1
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 77
+E+ + PK+QVYS PAE G++N L C V FHP +I ++LLK+G + +DLSF
Sbjct: 58 VESKESVPKVQVYSSKPAELGEANTLICLVQAFHPPEITIELLKDGAVLPNANQTDLSFD 237
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
K W F+L + + TP++++ YAC+V H+ + + W+ +M
Sbjct: 238 KTWHFHLSKFADITPSKEESYACQVTHI--GKRTVHAWEPNM 357
>emb|X16956.1|RNB2MG Rat mRNA for beta-2-microglobulin
Length = 634
Score = 90.9 bits (224), Expect = 2e-17
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = +2
Query: 65 RIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+I +E SDLSFSKDWSFY+L +TEFTPTE D YACRV HVTL +PK V WDRDM
Sbjct: 2 KIPNIEMSDLSFSKDWSFYILAHTEFTPTETDVYACRVKHVTLKEPKTVTWDRDM 166
>emb|X17002.1|MAB2MG Golden hamster partial mRNA for beta 2 microglobulin
Length = 478
Score = 86.3 bits (212), Expect = 4e-16
Identities = 36/54 (66%), Positives = 46/54 (84%)
Frame = +2
Query: 66 IEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
++KVE SDLSF+KDWSFYLL + EF PT D+YACRV+H+TL +PK+V W+RDM
Sbjct: 2 MDKVELSDLSFNKDWSFYLLAHREFVPTATDKYACRVSHITLKEPKVVTWERDM 163
>emb|AJ132753.1|GMO132753 Gadus morhua mRNA for beta2-microglobulin, clone b2, partial
Length = 603
Score = 84.7 bits (208), Expect = 1e-15
Identities = 38/92 (41%), Positives = 57/92 (61%)
Frame = +1
Query: 28 QVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYY 87
QVYS PAE GK N L C V FHP +I ++LLK+G + +DLSF K W F+L +
Sbjct: 1 QVYSSKPAELGKGNTLICLVQAFHPPEITIELLKDGAVLPNANQTDLSFDKTWHFHLSKF 180
Query: 88 TEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ TP++++ YAC+V H+ + + W+ +M
Sbjct: 181 ADITPSKEESYACQVTHI--GKRTVHAWEPNM 270
>dbj|AB006593.1|AB006593 Oryzias latipes orla-B2m mRNA for b2-microglobulin, complete cds
Length = 550
Score = 83.2 bits (204), Expect = 4e-15
Identities = 37/95 (38%), Positives = 58/95 (60%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P +QVYSR P + GK N L C+VS FHP DI + L+++ + + + + +DL+F ++W F+L
Sbjct: 107 PTVQVYSRDPGQYGKENTLICHVSNFHPPDITIRLMEDDQELPEAKQTDLAFKQNWHFHL 286
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
FTP + Y C+V H L+ K W+ +M
Sbjct: 287 TKSAPFTPKQGARYTCKVTHSGLA--KDYTWESNM 385
>gb|J05069.1|DOGSPS Canine 21 kDa signal peptidase subunit mRNA, complete cds
Length = 820
Score = 78.2 bits (191), Expect = 1e-13
Identities = 40/72 (55%), Positives = 50/72 (68%)
Frame = -2
Query: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF 76
G +A +R P + PA FLNCYVSGFHP +IE+DLLKNG+ + K E +DLSF
Sbjct: 195 GAQAARRLPGVTGGCGAPA------FLNCYVSGFHPPEIEIDLLKNGKEM-KAEQTDLSF 37
Query: 77 SKDWSFYLLYYT 88
SKDW+FYLL +T
Sbjct: 36 SKDWTFYLLVHT 1
>emb|X07447.1|GGBLBET1 Gallus domesticus B-L(beta) gene for MHC Class II antigen, exon 2-6
Length = 1423
Score = 72.8 bits (177), Expect = 5e-12
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK+++++ +++ L CYV+GF+P +IEV +NG E E+V +D+ + DW++
Sbjct: 485 PKVRIFALQSGSLPQTDRLACYVTGFYPPEIEVKWFQNGQEETERVVSTDVIQNGDWTYQ 664
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E +P D Y C+V H +L QP +W +
Sbjct: 665 VLVVLEISPRHGDSYVCQVEHTSLQQPITQRWGK 766
>emb|AJ248582.1|GGA248582 Gallus gallus partial B-LB15 minor gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 70.5 bits (171), Expect = 2e-11
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D YACRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYACRVEHASLRQPISQAWGK 650
>emb|AJ224349.1|PCO224349 Phasianus colchicus mRNA for MHC class II beta chain (DAB1*06),
partial
Length = 831
Score = 70.1 bits (170), Expect = 3e-11
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 276 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFHNGREETERVVSTDVMQNGDWTYQ 455
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
+L E P D Y CRV H +L QP W+
Sbjct: 456 VLVVLEAVPRRGDSYVCRVEHASLRQPVSQPWE 554
>emb|AJ224345.1|PCO224345 Phasianus colchicus mRNA for MHC class II beta chain (DAB2*0102)
Length = 947
Score = 70.1 bits (170), Expect = 3e-11
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 379 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFHNGREETERVVSTDVMQNGDWTYQ 558
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
+L E P D Y CRV H +L QP W+
Sbjct: 559 VLVVLEAVPRRGDSYVCRVEHASLRQPVSQPWE 657
>emb|AJ224348.1|PCO224348 Phasianus colchicus mRNA for MHC class II beta chain (DAB2*04),
partial
Length = 844
Score = 70.1 bits (170), Expect = 3e-11
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 276 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFHNGREETERVVSTDVMQNGDWTYQ 455
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
+L E P D Y CRV H +L QP W+
Sbjct: 456 VLVVLEAVPRRGDSYVCRVEHASLRQPVSQPWE 554
>emb|AJ224344.1|PCO224344 Phasianus colchicus mRNA for MHC class II beta chain (DAB1*0101)
Length = 1096
Score = 70.1 bits (170), Expect = 3e-11
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 383 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFHNGREETERVVSTDVMQNGDWTYQ 562
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
+L E P D Y CRV H +L QP W+
Sbjct: 563 VLVVLEAVPRRGDSYVCRVEHASLRQPVSQPWE 661
>emb|AJ248581.1|GGA248581 Gallus gallus partial B-LB15 major gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 70.1 bits (170), Expect = 3e-11
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV +NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFQNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248579.1|GGA248579 Gallus gallus partial B-LB14 major gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 70.1 bits (170), Expect = 3e-11
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV +NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFQNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>gb|M87655.1|CHKBLBETAC Chicken B-L beta chain mRNA
Length = 802
Score = 69.7 bits (169), Expect = 4e-11
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +3
Query: 21 IQRT--PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFS 77
+QR+ PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ +
Sbjct: 360 VQRSVEPKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQN 539
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
DW++ +L E P D Y CRV H +L QP W+
Sbjct: 540 GDWTYQVLVVLETVPRRGDSYVCRVEHASLRQPISQAWE 656
>gb|L20275.1|GINMHCIIBB Ginglymostoma cirratum MHC class II beta chain mRNA
Length = 1328
Score = 69.7 bits (169), Expect = 4e-11
Identities = 32/98 (32%), Positives = 54/98 (54%), Gaps = 1/98 (1%)
Frame = +3
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHS-DLSFSK 78
A Q PK+ + ++ G S L CY GF+P+ I V LKNG+++ + + +L +
Sbjct: 360 ARQVEPKVTIRTKESTYPGPSAILICYAVGFYPAKISVTWLKNGQKVSDADVTVELLSNG 539
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
DW++ + Y ++ P D+Y C V H +L+ P V W+
Sbjct: 540 DWTYQVRQYLQYEPVYGDKYTCHVEHSSLTSPMSVDWE 653
>gb|L20274.1|GINMHCIIBA Ginglymostoma cirratum MHC class II beta chain mRNA
Length = 1330
Score = 69.7 bits (169), Expect = 4e-11
Identities = 32/98 (32%), Positives = 54/98 (54%), Gaps = 1/98 (1%)
Frame = +3
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHS-DLSFSK 78
A Q PK+ + ++ G S L CY GF+P+ I V LKNG+++ + + +L +
Sbjct: 360 ARQVEPKVTIRTKESTYPGPSAILICYAVGFYPAKISVTWLKNGQKVSDADVTVELLSNG 539
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
DW++ + Y ++ P D+Y C V H +L+ P V W+
Sbjct: 540 DWTYQVRQYLQYEPVYGDKYTCHVEHSSLTSPMSVDWE 653
>gb|AF194146.1|AF194146 Ginglymostoma cirratum clone 1 MHC class IIB antigen precursor,
mRNA, partial cds
Length = 1293
Score = 69.7 bits (169), Expect = 4e-11
Identities = 32/98 (32%), Positives = 54/98 (54%), Gaps = 1/98 (1%)
Frame = +2
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHS-DLSFSK 78
A Q PK+ + ++ G S L CY GF+P+ I V LKNG+++ + + +L +
Sbjct: 347 ARQVEPKVTIRTKESTYPGPSAILICYAVGFYPAKISVTWLKNGQKVSDADVTVELLSNG 526
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
DW++ + Y ++ P D+Y C V H +L+ P V W+
Sbjct: 527 DWTYQVRQYLQYEPVYGDKYTCHVEHSSLTSPMSVDWE 640
>gb|M87653.1|CHKBLBETAA Chicken B-L beta chain mRNA
Length = 1024
Score = 69.7 bits (169), Expect = 4e-11
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +2
Query: 21 IQRT--PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFS 77
+QR+ PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ +
Sbjct: 287 VQRSVEPKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQN 466
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
DW++ +L E P D Y CRV H +L QP W+
Sbjct: 467 GDWTYQVLVVLETVPRRGDSYVCRVEHASLRQPISQAWE 583
>gb|U02881.1|GGU02881 Gallus gallus SPAFAS line 11 MHC class II B-L beta chain mRNA,
partial cds
Length = 694
Score = 69.7 bits (169), Expect = 4e-11
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +2
Query: 21 IQRT--PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFS 77
+QR+ PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ +
Sbjct: 356 VQRSVEPKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQN 535
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
DW++ +L E P D Y CRV H +L QP W+
Sbjct: 536 GDWTYQVLVVLETVPRRGDSYVCRVEHASLRQPISQAWE 652
>gb|M87654.1|CHKBLBETAB Chicken B-L beta chain mRNA
Length = 950
Score = 69.7 bits (169), Expect = 4e-11
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +1
Query: 21 IQRT--PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFS 77
+QR+ PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ +
Sbjct: 364 VQRSVEPKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQN 543
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
DW++ +L E P D Y CRV H +L QP W+
Sbjct: 544 GDWTYQVLVVLETVPRRGDSYVCRVEHASLRQPISQAWE 660
>gb|S66480.1|S66480 Gallus gallus major histocompatibility complex class II beta chain
(S19) mRNA, partial cds
Length = 956
Score = 69.7 bits (169), Expect = 4e-11
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +1
Query: 21 IQRT--PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFS 77
+QR+ PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ +
Sbjct: 355 VQRSVEPKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQN 534
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
DW++ +L E P D Y CRV H +L QP W+
Sbjct: 535 GDWTYQVLVVLETVPRRGDSYVCRVEHASLRQPISQAWE 651
>dbj|AB020221.1|AB020221 Gallus gallus Y-Lb III mRNA, pseudogene
Length = 647
Score = 68.9 bits (167), Expect = 7e-11
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK+++++ +++ L CYV+GF+P +IEV +NG E E+V +D+ + DW++
Sbjct: 380 PKVRIFALQSGSLPQTDRLACYVTGFYPPEIEVKWFQNGQEETERVVSTDVIQNGDWTYQ 559
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQP 110
+L E +P D Y C+V H +L QP
Sbjct: 560 VLVVLETSPRHGDSYVCQVEHTSLEQP 640
>dbj|AB020220.1|AB020220 Gallus gallus Y-Lb III mRNA, pseudogene
Length = 647
Score = 68.9 bits (167), Expect = 7e-11
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK+++++ +++ L CYV+GF+P +IEV +NG E E+V +D+ + DW++
Sbjct: 380 PKVRIFALQSGSLPQTDRLACYVTGFYPPEIEVKWFQNGQEETERVVSTDVIQNGDWTYQ 559
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQP 110
+L E +P D Y C+V H +L QP
Sbjct: 560 VLVVLETSPRHGDSYVCQVEHTSLEQP 640
>gb|M26306.1|CHKMHCBCHA Chicken (clone CCII-4-1) MHC class II beta chain gene, complete cds
Length = 1715
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 652 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 831
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 832 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 933
>emb|AL023516.1|GGBLOCUS Gallus gallus (chicken) DNA sequence from a contig of cosmids cB12,
c4.5 and cBF23. Contains two Butyrophilin like genes, a
gene coding for two isoforms of a B locus G (Zipper
protein) like protein, genes coding for B locus Lectin
like Natural Killer c>
Length = 92863
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = -1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 34003 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 33824
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 33823 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 33722
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 40800 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 40979
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 40980 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 41081
Score = 48.1 bits (113), Expect = 1e-04
Identities = 24/87 (27%), Positives = 42/87 (47%), Gaps = 5/87 (5%)
Frame = +1
Query: 34 PAENGKSNF---LNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF--SKDWSFYLLYYT 88
PA+ G + L C+V GF+P ++ + L NG+ + +HS + + +W++
Sbjct: 59092 PAQTGNPSVPIRLTCHVWGFYPPEVTIIWLHNGDIVGPGDHSPMFAIPNGNWTYQTQVAL 59271
Query: 89 EFTPTEKDEYACRVNHVTLSQPKIVKW 115
P D Y C V H +L +P + W
Sbjct: 59272 SVAPEVGDTYTCSVQHASLEEPLLEDW 59352
Score = 45.8 bits (107), Expect = 6e-04
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 43 LNCYVSGFHPSDIEVDLLKNGE-RIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR 101
L+C GF+P I V LK+G R + + + + D +++ + P + D+Y CR
Sbjct: 61675 LSCRAHGFYPRPIAVSWLKDGAVRGQDAQSGGIVPNGDGTYHTWVTIDAQPGDGDKYQCR 61854
Query: 102 VNHVTLSQPKIVKW 115
V H +L QP + W
Sbjct: 61855 VEHASLPQPGLYSW 61896
Score = 44.7 bits (104), Expect = 0.001
Identities = 24/74 (32%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Frame = -2
Query: 43 LNCYVSGFHPSDIEVDLLKNGERIEKVEHSD-LSFSKDWSFYLLYYTEFTPTEKDEYACR 101
L+C GF+P I V LK+G + HS + + D +++ + P + D+Y CR
Sbjct: 75381 LSCRAHGFYPRPIVVSWLKDGAVRGQDAHSGGIVPNGDGTYHTWVTIDAQPGDGDKYQCR 75202
Query: 102 VNHVTLSQPKIVKW 115
V H +L QP + W
Sbjct: 75201 VEHASLPQPGLYSW 75160
Score = 34.3 bits (77), Expect = 1.9
Identities = 21/91 (23%), Positives = 40/91 (43%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84
P++++ + + + L C+V GF+P + + L NG + + + L + DW++
Sbjct: 55957 PQVRIVPIPISNDPDTVHLICHVWGFYPPAVTIQWLHNGLVVASGD-TKLLPNGDWTYRT 56133
Query: 85 LYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+ Y C V H +L QP W
Sbjct: 56134 QVALRASTAAGSTYTCSVWHSSLEQPLQEDW 56226
>gb|M29763.1|CHKMHBLBA Chicken MHC class II B-LBII-beta gene, complete cds
Length = 2405
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 1488 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 1667
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 1668 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 1769
>gb|M26307.1|CHKMHCBCHB Chicken (clone CCII-7-1) MHC class II beta chain gene, complete cds
Length = 2117
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 1226 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 1405
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 1406 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 1507
>emb|AJ248586.1|GGA248586 Gallus gallus partial B-LB21 minor gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248585.1|GGA248585 Gallus gallus partial B-LB21 major gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248584.1|GGA248584 Gallus gallus partial B-LB19 minor gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248583.1|GGA248583 Gallus gallus partial B-LB19 major gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248580.1|GGA248580 Gallus gallus partial B-LB14 minor gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248578.1|GGA248578 Gallus gallus partial B-LB12c gene for MHC class II beta 1 and 2
domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248577.1|GGA248577 Gallus gallus partial B-LB12 minor gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248576.1|GGA248576 Gallus gallus partial B-LB12 major gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248575.1|GGA248575 Gallus gallus partial B-LB4 minor gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248574.1|GGA248574 Gallus gallus partial B-LB4 major gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248573.1|GGA248573 Gallus gallus partial B-LB2 minor gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>emb|AJ248572.1|GGA248572 Gallus gallus partial B-LB2 major gene for MHC class II beta 1 and
2 domains, exons 2 to 3
Length = 651
Score = 68.9 bits (167), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P +IEV NG E E+V +D+ + DW++
Sbjct: 369 PKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLNGREETERVVSTDVMQNGDWTYQ 548
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E P D Y CRV H +L QP W +
Sbjct: 549 VLVVLETVPRRGDSYVCRVEHASLRQPISQAWGK 650
>gb|M81624.1|WALMHA Macropus rufogriseus (DAB1) MHC class II antigen mRNA, 3' cds
Length = 1444
Score = 68.6 bits (166), Expect = 9e-11
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
P++ VY A G N L C V+GF+P D+EV NG E V + L + DW++
Sbjct: 331 PEVTVYPSKLAPLGHHNLLVCSVTGFYPGDVEVRWFLNGQEETAGVVSTGLVSNGDWTYQ 510
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E TP D Y C+V H +L +P I+ W
Sbjct: 511 MLVMLEMTPKHGDVYTCQVEHSSLQKPVILDW 606
>gb|AF312029.1|AF312029 Trichosurus vulpecula MHC class II antigen precursor (HLA-DRB2)
mRNA, complete cds
Length = 1534
Score = 68.2 bits (165), Expect = 1e-10
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
P++ VY A G N L C V+GF+P DIEV NG E V + L + +W++
Sbjct: 434 PEVTVYPSKTAPLGHHNLLVCSVTGFYPGDIEVRWFLNGQEETAGVVSTGLISNGEWTYQ 613
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E TP D Y C+V H +L +P I+ W
Sbjct: 614 ILVMLEMTPKRGDVYTCQVEHSSLQRPVILDW 709
>emb|Y07819.1|BTMHCII2 B.taurus mRNA for MHC class II, clone R2-2
Length = 946
Score = 67.8 bits (164), Expect = 2e-10
Identities = 32/101 (31%), Positives = 52/101 (50%), Gaps = 1/101 (0%)
Frame = +2
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A + P++ V+S+ P G+ N L C+V P I + L+NG + E V +
Sbjct: 338 ATNKVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIKS 517
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D+SF + Y F P++ D Y C+V H L +P + W+ D+
Sbjct: 518 DYSFLKINYLTFLPSDDDVYDCKVEHWGLDEPLLKHWEPDI 640
>dbj|D50454.1|BOVNQ1 Bovine mRNA for MHC class II DQA1, complete cds
Length = 768
Score = 67.8 bits (164), Expect = 2e-10
Identities = 32/101 (31%), Positives = 52/101 (50%), Gaps = 1/101 (0%)
Frame = +1
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A + P++ V+S+ P G+ N L C+V P I + L+NG + E V +
Sbjct: 322 ATNKVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIKS 501
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D+SF + Y F P++ D Y C+V H L +P + W+ D+
Sbjct: 502 DYSFLKINYLTFLPSDDDVYDCKVEHWGLDEPLLKHWEPDI 624
>ref|NM_033554.1| Homo sapiens major histocompatibility complex, class II, DP alpha 1
(HLA-DPA1), mRNA
Length = 1210
Score = 67.4 bits (163), Expect = 2e-10
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFS 77
+A P++ V+ + P E G+ N L C++ F P + V L NGE + E V S
Sbjct: 374 QAANDPPEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPR 553
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
D+SF+ +Y F P+ +D Y CRV H L QP + W+
Sbjct: 554 TDYSFHKFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHWE 670
>gb|BC009956.1|BC009956 Homo sapiens, Similar to major histocompatibility complex, class
II, DR alpha, clone MGC:14114 IMAGE:4309471, mRNA,
complete cds
Length = 1210
Score = 67.4 bits (163), Expect = 2e-10
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFS 77
+A P++ V+ + P E G+ N L C++ F P + V L NGE + E V S
Sbjct: 374 QAANDPPEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPR 553
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
D+SF+ +Y F P+ +D Y CRV H L QP + W+
Sbjct: 554 TDYSFHKFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHWE 670
>ref|XM_053718.1| Homo sapiens similar to HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP
ALPHA CHAIN PRECURSOR (HLA-SB ALPHA CHAIN) (MHC CLASS II
DP3-ALPHA) (DP(W3)) (DP(W4)) (H. sapiens) (LOC135748),
mRNA
Length = 1157
Score = 67.0 bits (162), Expect = 3e-10
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFS 77
+A P++ V+ + P E G+ N L C++ F P + V L NGE + E V S
Sbjct: 365 QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPR 544
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
D+SF+ +Y F P+ +D Y CRV H L QP + W+
Sbjct: 545 TDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWE 661
>gb|S40633.1|S40633 HLA class II: DPA1 (DPA1*0101) [human, Genomic, 690 nt]
Length = 690
Score = 67.0 bits (162), Expect = 3e-10
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +1
Query: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFS 77
+A P++ V+ + P E G+ N L C++ F P + V L NGE + E V S
Sbjct: 241 QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPR 420
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
D+SF+ +Y F P+ +D Y CRV H L QP + W+
Sbjct: 421 TDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWE 537
>gb|M27487.1|HUMMHDPA Homo sapiens MHC class II DPw3-alpha-1 chain mRNA, complete cds
Length = 818
Score = 67.0 bits (162), Expect = 3e-10
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +3
Query: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFS 77
+A P++ V+ + P E G+ N L C++ F P + V L NGE + E V S
Sbjct: 369 QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPR 548
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
D+SF+ +Y F P+ +D Y CRV H L QP + W+
Sbjct: 549 TDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWE 665
>gb|AF256651.1|AF256651 Caiman crocodilus MHC class II beta chain (hcIIbeta) gene, complete
cds
Length = 9649
Score = 67.0 bits (162), Expect = 3e-10
Identities = 35/96 (36%), Positives = 51/96 (52%), Gaps = 1/96 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + L C V+GF+P IEV LKNG E+ V ++L + DW+F
Sbjct: 4537 PKVKVSPTKSGAQAHPDTLVCSVTGFYPGGIEVKWLKNGQEQTAGVVSTELMQNGDWTFQ 4716
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+L E TP D Y C+V H +L P V W +++
Sbjct: 4717 ILVMLEMTPRSGDAYTCQVEHSSLPGPITVLWGKEL 4824
>emb|X00457.1|HSSBA1 Human mRNA for SB classII histocompatibility antigen alpha-chain
Length = 1048
Score = 67.0 bits (162), Expect = 3e-10
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFS 77
+A P++ V+ + P E G+ N L C++ F P + V L NGE + E V S
Sbjct: 254 QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPR 433
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
D+SF+ +Y F P+ +D Y CRV H L QP + W+
Sbjct: 434 TDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWE 550
>gb|M29938.1|PIGMHDQAA Pig MHC class II SLA-DQ alpha chain mRNA (haplotype c), complete
cds
Length = 1105
Score = 66.6 bits (161), Expect = 4e-10
Identities = 30/100 (30%), Positives = 51/100 (51%)
Frame = +1
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKD 79
A+ + P++ V+S+ P G+ N L C+V P I + LKNG ++ + D
Sbjct: 334 AVNKVPEVTVFSKSPVILGQPNTLICHVDSIFPPVINITWLKNGHSVKGFSETSFLSKND 513
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
SF + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 514 HSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEI 633
>ref|XM_039628.3| Homo sapiens major histocompatibility complex, class II, DP alpha 1
(HLA-DPA1), mRNA
Length = 882
Score = 66.2 bits (160), Expect = 5e-10
Identities = 35/98 (35%), Positives = 51/98 (51%), Gaps = 1/98 (1%)
Frame = +2
Query: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFS 77
+A P++ V+ + P E G+ N L C++ F P + V L NGE + E V S
Sbjct: 254 QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPR 433
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
D+SF+ +Y F P+ +D Y CRV H L QP + W
Sbjct: 434 TDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW 547
>gb|AF277661.1|AF277661 Caiman crocodilus MHC class II beta chain (hcIIbeta) gene, complete
cds
Length = 7595
Score = 66.2 bits (160), Expect = 5e-10
Identities = 35/94 (37%), Positives = 49/94 (51%), Gaps = 1/94 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK+++ + L C V+GF+P IEV LKNG E+ V ++L + DW+F
Sbjct: 3317 PKVKISPTKSGAQAHPDTLVCSVTGFYPGGIEVKWLKNGQEQTAGVVSTELMQNGDWTFQ 3496
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+L E TP D Y C+V H +L P V W R
Sbjct: 3497 ILVMLEMTPRSGDVYTCQVEHSSLPGPVAVLWGR 3598
>gb|AF312030.1|AF312030 Trichosurus vulpecula MHC class II antigen precursor (HLA-DRB3)
mRNA, complete cds
Length = 1532
Score = 66.2 bits (160), Expect = 5e-10
Identities = 33/92 (35%), Positives = 48/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVD-LLKNGERIEKVEHSDLSFSKDWSFY 83
P++ VY A G N L C V+GF+P DIEV L E V + L + DW++
Sbjct: 411 PEVTVYPSKTAPLGHHNLLVCSVTGFYPGDIEVRWFLNRQEETAGVVSTGLISNGDWTYQ 590
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E TP D Y C+ H +L +P +++W
Sbjct: 591 ILVMLEMTPKRGDVYTCQAEHSSLQRPVVLEW 686
>emb|X80482.1|HSMHCIIHA H.sapiens MHC class II HLA-DPA1 gene 02021
Length = 282
Score = 65.9 bits (159), Expect = 6e-10
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ + P E G+ N L C++ F P + V L NGE + E V S D+SF+
Sbjct: 6 PEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFH 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F P+ +D Y CRV H L QP + W
Sbjct: 186 KFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHW 281
>emb|X80484.1|HSMHCIID H.sapiens MHC class II HLA-DPA1 gene 02022
Length = 282
Score = 65.9 bits (159), Expect = 6e-10
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ + P E G+ N L C++ F P + V L NGE + E V S D+SF+
Sbjct: 6 PEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFH 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F P+ +D Y CRV H L QP + W
Sbjct: 186 KFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHW 281
>emb|X82393.1|HS0201X3 H.sapiens MHC class II HLA-DPA1*0201 gene (exon 3)
Length = 282
Score = 65.9 bits (159), Expect = 6e-10
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ + P E G+ N L C++ F P + V L NGE + E V S D+SF+
Sbjct: 6 PEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFH 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F P+ +D Y CRV H L QP + W
Sbjct: 186 KFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHW 281
>dbj|D13688.1|XELMHCT4 Clawed frog (X. laevis) mRNA for MHC class II beta-chain, complete
cds
Length = 1654
Score = 65.9 bits (159), Expect = 6e-10
Identities = 34/96 (35%), Positives = 51/96 (52%), Gaps = 1/96 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
P +++ + + N + C+V GF P I+V LKNG E E+V S+L + DW+F
Sbjct: 359 PNVKIVNTKTLDLEHENLITCFVDGFFPPMIKVTWLKNGIEEGEQVTSSELLQNGDWTFE 538
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ E T D + CRV H +L QP V W+ D+
Sbjct: 539 IHVMLETTIKHGDTFTCRVEHSSLQQPVSVNWEPDV 646
>gb|AF256650.1|AF256650 Caiman crocodilus MHC class II alpha chain (hcIIalpha) gene, complete
cds
Length = 13891
Score = 65.9 bits (159), Expect = 6e-10
Identities = 39/103 (37%), Positives = 55/103 (52%), Gaps = 1/103 (0%)
Frame = -2
Query: 18 LEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSF 76
L AI T K++V + L C V GF+PS IEV LKNG E++ V ++L
Sbjct: 4311 LPAIPGT-KVKVSPPKSGAQAHPDTLICSVMGFYPSRIEVKWLKNGQEQMAGVVSTELMQ 4135
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ DW+F +L E TP D Y C+V H +L P V W +++
Sbjct: 4134 NGDWTFQILVMLEMTPRSGDAYTCQVEHSSLPGPVTVLWGKEL 4006
Score = 65.5 bits (158), Expect = 8e-10
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +3
Query: 24 TPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSF 82
+P+++V+S +P E G+ N L C+V F P + + LKNG E + V +D +D +F
Sbjct: 11361 SPEVKVFSENPVELGEPNILICFVDKFSPPVLNITWLKNGKEMTDGVFETDFYPRQDNAF 11540
Query: 83 YLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
Y F PT D Y CRV H L++P + W
Sbjct: 11541 RKFTYLPFIPTTDDYYDCRVEHWGLAKPFLKHW 11639
>gb|AF212855.1|AF212855 Oreochromis niloticus MHC class II alpha subunit (Orni-DBA) mRNA,
Orni-DBA*s01 allele, complete cds
Length = 1192
Score = 65.9 bits (159), Expect = 6e-10
Identities = 32/93 (34%), Positives = 54/93 (57%), Gaps = 1/93 (1%)
Frame = +3
Query: 27 IQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF-SKDWSFYLL 85
+ +Y+R E G N L C+V+GF+P+ + V KNG+++ + ++ + +KD SF
Sbjct: 339 VMIYTRDEVEFGVQNILICHVTGFYPAPVNVSWTKNGQKVTEGSSINVPYINKDGSFKQT 518
Query: 86 YYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRD 118
+FTP D Y+C V HV+L++P +D D
Sbjct: 519 SRLDFTPQLGDMYSCTVEHVSLTEPLTKIYDVD 617
>emb|X81347.1|HSDPA1031 H.sapiens (haplotype DPA1*0301)MHC class II HLA-DPA1 gene, exon 3
Length = 282
Score = 65.5 bits (158), Expect = 8e-10
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ + P E G+ N L C++ F P + V L NGE + E V S D+SF+
Sbjct: 6 PEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFH 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F P+ +D Y CRV H L QP + W
Sbjct: 186 KFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW 281
>emb|X81348.1|HSDPA0104 H.sapiens (haplotype DPA1*0104) MHC class II HLA-DPA1 gene, exon 3
Length = 282
Score = 65.5 bits (158), Expect = 8e-10
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ + P E G+ N L C++ F P + V L NGE + E V S D+SF+
Sbjct: 6 PEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFH 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F P+ +D Y CRV H L QP + W
Sbjct: 186 KFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW 281
>emb|X82392.1|HS0104X3 H.sapiens MHC class II HLA-DPA1*0104 gene (exon 3)
Length = 282
Score = 65.5 bits (158), Expect = 8e-10
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ + P E G+ N L C++ F P + V L NGE + E V S D+SF+
Sbjct: 6 PEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFH 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F P+ +D Y CRV H L QP + W
Sbjct: 186 KFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW 281
>gb|AF037314.1|AF037314 Bos taurus MHC class II DQA precursor BoLA-DQA mRNA (BoLA-DQA*2801
allele), complete cds
Length = 1150
Score = 65.5 bits (158), Expect = 8e-10
Identities = 31/101 (30%), Positives = 52/101 (50%), Gaps = 1/101 (0%)
Frame = +1
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A + P++ V+S+ P G+ N L C+V P I + L+NG + E V +
Sbjct: 376 ATNKVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIRS 555
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D+SF + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 556 DYSFLKIKYLAFLPSDDDIYDCKVEHWGLDEPLLKHWEPEI 678
>gb|M23904.1|HUMMHDRC02 Human MHC class II lymphocyte antigen (DPw4-alpha-1) gene, exons 2-4
Length = 2986
Score = 65.5 bits (158), Expect = 8e-10
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ + P E G+ N L C++ F P + V L NGE + E V S D+SF+
Sbjct: 1361 PEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFH 1540
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F P+ +D Y CRV H L QP + W
Sbjct: 1541 KFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW 1636
>emb|X03100.1|HSHLASBA Human HLA-SB(DP) alpha gene
Length = 14646
Score = 65.5 bits (158), Expect = 8e-10
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ + P E G+ N L C++ F P + V L NGE + E V S D+SF+
Sbjct: 6925 PEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFH 7104
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F P+ +D Y CRV H L QP + W
Sbjct: 7105 KFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW 7200
>gb|AF390589.1|AF390589 Anas platyrhynchos MHC class II antigen beta chain mRNA, complete
cds
Length = 1075
Score = 65.1 bits (157), Expect = 1e-09
Identities = 31/92 (33%), Positives = 52/92 (55%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK++V + +++ L CYV+GF+P++I++ KNG E + V +D+ + DW++
Sbjct: 427 PKVRVSPMQSSSLPQTDRLACYVTGFYPAEIQLKWFKNGQEETKHVVSTDVIQNGDWTYQ 606
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E TP D Y C V H +L P +W
Sbjct: 607 VLVMLESTPQHGDTYECHVQHASLKSPITHEW 702
>gb|U18110.1|MRU18110 Macropus rufogriseus MHC class II DN alpha protein precursor
(Maru-DNA) mRNA, partial cds
Length = 2099
Score = 64.7 bits (156), Expect = 1e-09
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +1
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSK 78
AI P++ V+S P E G+ N L C V P + + L+NG+ I V +D
Sbjct: 316 AISVPPEVTVFSESPVELGQPNVLICLVDNIFPPVVNIKWLRNGQVITTGVSETDFYSRP 495
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
D F YY F P +D Y C+V H L QP + W+
Sbjct: 496 DHKFRKFYYLTFLPNTEDFYDCKVEHWGLEQPLLKHWE 609
>gb|M93433.1|SHPMHDQA21 Ovis aries Merino MHC OVAR-DQ-ALPHA-2.1 (MHC OVAR-DQA2) mRNA,
complete cds
Length = 1129
Score = 64.7 bits (156), Expect = 1e-09
Identities = 33/101 (32%), Positives = 51/101 (49%), Gaps = 1/101 (0%)
Frame = +1
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
AI P++ V+S+ P G+ N L C+V P I + LKNG + E V +
Sbjct: 358 AINEVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHAVTEGVSETSFLPKD 537
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 538 DHSFLKIGYLTFLPSDDDVYDCKVEHWGLDEPLLKHWEPEI 660
>dbj|D13687.1|XELMHCP6 Clawed frog (X. laevis) mRNA for MHC class II beta-chain, partial
sequence
Length = 1253
Score = 64.7 bits (156), Expect = 1e-09
Identities = 35/96 (36%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
P + + + + N + C V GF P I+V LKNG E E+V S+L S DW+F
Sbjct: 378 PDVNIVNTKTLDLEHENMITCIVDGFFPPIIKVTWLKNGIEEGEQVTSSELLQSGDWTFE 557
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ E T D + CRV H +L QP V W+ D+
Sbjct: 558 IHVMLETTIKHGDTFTCRVEHSSLQQPVSVNWEPDV 665
>dbj|D50036.1|D50036 Xenopus laevis mRNA for MHC classII beta-chain, partial cds
Length = 1379
Score = 64.7 bits (156), Expect = 1e-09
Identities = 33/96 (34%), Positives = 51/96 (52%), Gaps = 1/96 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
P +++ + + N + C+V GF P I+V LKNG E E+V S+L + DW+F
Sbjct: 323 PNVKIVNTKTLDLEHENLITCFVGGFFPPLIKVTWLKNGIEEGEQVTSSELLQNGDWTFE 502
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ E T D + CRV H +L QP + W+ D+
Sbjct: 503 IHVMLETTIKHGDTFTCRVEHSSLQQPVYLNWEPDV 610
>dbj|D50035.1|D50035 Xenopus laevis mRNA for MHC class II beta-chain, partial cds
Length = 1632
Score = 64.7 bits (156), Expect = 1e-09
Identities = 33/96 (34%), Positives = 51/96 (52%), Gaps = 1/96 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
P +++ + + N + C+V GF P I+V LKNG E E+V S+L + DW+F
Sbjct: 323 PNVKIVNTKTLDLEHENLITCFVGGFFPPLIKVTWLKNGIEEGEQVTSSELLQNGDWTFE 502
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ E T D + CRV H +L QP + W+ D+
Sbjct: 503 IHVMLETTIKHGDTFTCRVEHSSLQQPVYLNWEPDV 610
>gb|M90306.1|BOVMHDQA Bovine MHC LA DQA alpha-5 mRNA, 3' end
Length = 783
Score = 64.7 bits (156), Expect = 1e-09
Identities = 33/101 (32%), Positives = 51/101 (49%), Gaps = 1/101 (0%)
Frame = +1
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGER-IEKVEHSDLSFSK 78
A + P++ V+S+ P G+ N L C+V P I + LKNG IE + +
Sbjct: 244 ATNKVPEVTVFSKSPMMLGQPNTLICHVDNIFPPVINITWLKNGHLVIEGISETSFLSKD 423
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF + Y F P++ D Y C+V H L +P + W+ D+
Sbjct: 424 DHSFSKISYLTFLPSDDDVYDCKVEHWGLDKPLLKHWEPDI 546
>gb|S80409.1|S80390S3 MHC RT1.H alpha =major histocompatibility complex class II alpha
chain [rats, Genomic, 324 nt, segment 3 of 4]
Length = 324
Score = 64.3 bits (155), Expect = 2e-09
Identities = 30/94 (31%), Positives = 50/94 (52%), Gaps = 1/94 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ ++P E G+ N L C++ P + V L+NG+ + E + S + F+
Sbjct: 19 PEVTVFPKNPVELGQPNVLICHIDRLFPPVLNVTWLRNGQPVTEGTSETVFLASTELRFH 198
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117
+Y F PT +D Y CRV H +L QP + W +
Sbjct: 199 KFHYLTFIPTAQDVYDCRVEHWSLDQPSLSHWGK 300
>dbj|D42014.1|RATLECA3 Rattus norvegicus major histocompatibility complex class II H-alpha
gene, i gene for alpha-2 domain and exon 3
Length = 282
Score = 63.9 bits (154), Expect = 2e-09
Identities = 30/92 (32%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ ++P E G+ N L C++ P + V L+NG+ + E + S + F+
Sbjct: 6 PEVTVFPKNPVELGQPNVLICHIDRLFPPVLNVTWLRNGQPVTEGTSETVFLASTELRFH 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F PT +D Y CRV H +L QP + W
Sbjct: 186 KFHYLTFIPTAQDVYDCRVEHWSLDQPSLSHW 281
>gb|M93430.1|SHPMHCDQA1 Ovis aries Merino MHC OVAR-DQ-ALPHA1 (MHC OVAR-DQA1) mRNA, complete
cds
Length = 1148
Score = 63.9 bits (154), Expect = 2e-09
Identities = 32/101 (31%), Positives = 52/101 (50%), Gaps = 1/101 (0%)
Frame = +2
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGER-IEKVEHSDLSFSK 78
A + P++ V+S+ P G+ N L C+V P I + L+NG IE V +
Sbjct: 377 ATNKVPEVTVFSKSPMMLGQPNTLICHVDNIFPPVINITWLRNGHSVIEGVSATSFLSKD 556
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D+SF + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 557 DYSFSKISYLTFLPSDDDVYDCKVEHWGLDEPLLKHWEPEI 679
>dbj|D13685.1|XELMHCF8 Clawed frog (X. laevis) mRNA for MHC class II beta-chain, complete
cds
Length = 1279
Score = 63.9 bits (154), Expect = 2e-09
Identities = 33/96 (34%), Positives = 51/96 (52%), Gaps = 1/96 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
P +++ + + N + C+V GF P I+V LKNG E E+V S+L + DW+F
Sbjct: 378 PNVKIVNTKTLDLEHENLITCFVDGFFPPMIKVTWLKNGIEEGEQVTSSELLPNGDWTFE 557
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ E T D + C+V H +L QP V W+ D+
Sbjct: 558 IHVMLETTIKHGDTFTCQVEHSSLQQPVSVNWEPDV 665
>emb|Y14022.1|BIY14022 Bos indicus BoLA DQA3 gene, isolate F100
Length = 888
Score = 63.5 bits (153), Expect = 3e-09
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +1
Query: 21 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKD 79
I P++ V+S+ P G+ N L C+V P I + L+NG + E V + D
Sbjct: 322 INEVPEVTVFSKSPMMLGQPNTLICHVDNIFPPVINITWLRNGHAVTEGVSETSFLPKSD 501
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+SF + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 502 YSFLKIGYLTFLPSDDDVYDCKVEHWGLDEPLLKHWEPEI 621
>gb|AF010497.1|AF010497 Monodelphis domestica MHC class II beta chain precursor (Modo-DAB1)
mRNA, complete cds
Length = 1664
Score = 63.5 bits (153), Expect = 3e-09
Identities = 35/92 (38%), Positives = 46/92 (49%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
P++ VY A G N L C VSGF+P + V NG E+ V + L + DW+F
Sbjct: 460 PEVLVYPSKTAPVGHHNLLVCSVSGFYPGAVAVTWSVNGQEQRAGVVSTGLMRNGDWTFQ 639
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E TP D Y C V H +L +P +V W
Sbjct: 640 TLVMLEVTPQRGDVYTCHVEHSSLQKPVLVAW 735
>gb|M57528.1|DOGMHCDW3 Canine MHC class II DLA-DRB mRNA (Dw3), partial cds
Length = 771
Score = 63.5 bits (153), Expect = 3e-09
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Frame = +1
Query: 20 AIQRT--PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSF 76
A+QR P + VY N L C V+GF+P IEV L+NG+ E V + L
Sbjct: 343 AVQRRVEPTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIR 522
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+ DW+F +L E P + Y C+V H +L+ P V+W
Sbjct: 523 NGDWTFQILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 639
>gb|M57537.1|DOGMHCDW1 Canine MHC class II DLA-DRB mRNA (Dw1), partial cds
Length = 771
Score = 63.5 bits (153), Expect = 3e-09
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Frame = +1
Query: 20 AIQRT--PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSF 76
A+QR P + VY N L C V+GF+P IEV L+NG+ E V + L
Sbjct: 343 AVQRRVEPTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIR 522
Query: 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+ DW+F +L E P + Y C+V H +L+ P V+W
Sbjct: 523 NGDWTFQILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 639
>gb|AF454378.1|AF454378 Xenopus laevis MHC class II antigen alpha chain DBAf2 mRNA,
complete cds
Length = 3315
Score = 63.5 bits (153), Expect = 3e-09
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSF--SKDWSF 82
P + VY P G+ N L C V+ P + +KNGE+I V S+ SF ++D+SF
Sbjct: 316 PLVSVYITKPVVLGEPNILICCVTNIFPPVMNTTWIKNGEKIT-VGFSETSFLPAQDYSF 492
Query: 83 YLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
L+Y F P E D Y C+V H L +P W D+
Sbjct: 493 RRLHYLAFIPNEHDIYTCKVEHWGLEKPTRRVWKHDV 603
>gb|L19451.1|ZEFMHCG Brachydanio rerio (A4) MHC class II integram membrane protein alpha
chain gene, complete cds
Length = 1464
Score = 63.2 bits (152), Expect = 4e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P+ +YSR + N L C+V+GF P + V KN E + E + S + D ++
Sbjct: 735 PQTSIYSRDDVQPDIENKLICHVTGFFPPPVRVSWTKNNEIVTEGMSVSQYRPNNDGTYN 914
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+ FTP E D Y+C VNH TL QP+ W
Sbjct: 915 IFSTLRFTPVEGDIYSCSVNHKTLEQPQTKAW 1010
>gb|AF212849.1|AF212849 Aulonocara hansbaenschi MHC class II alpha subunit (MHC-Auha-DBA)
mRNA, MHC-Auha-DBA*s01 allele, complete cds
Length = 1043
Score = 63.2 bits (152), Expect = 4e-09
Identities = 29/84 (34%), Positives = 49/84 (57%)
Frame = +1
Query: 27 IQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLY 86
+ +Y+R E G+ N L C+V+GF+P+ + V KNG+++ + +KD +F +
Sbjct: 397 VMIYTRDEVEFGEKNTLICHVTGFYPAPVNVSWTKNGQKVTGSSINTPYPNKDGTFTQIS 576
Query: 87 YTEFTPTEKDEYACRVNHVTLSQP 110
+FTP D Y+C V H+ L+QP
Sbjct: 577 RLQFTPQLGDIYSCAVQHLALTQP 648
>gb|M30117.1|BOVMHWIA Bovine MHC class II BoLA-DQA-alpha gene, exons 2-4
Length = 1761
Score = 63.2 bits (152), Expect = 4e-09
Identities = 30/92 (32%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+S+ P G+ N L C+V P I + L+NG + E V + D+SF
Sbjct: 1058 PEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIKSDYSFL 1237
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+ Y F P++ D Y C+V H L +P + W
Sbjct: 1238 KINYLTFLPSDDDVYDCKVEHWGLDEPLLKHW 1333
>gb|M33304.1|SHPMHDQAA Sheep MHC class II OLA-DQA alpha-chain gene, 3' end
Length = 2387
Score = 63.2 bits (152), Expect = 4e-09
Identities = 30/92 (32%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+S+ P G+ N L C+V P I + L+NG + E V + D+SF
Sbjct: 1090 PEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIKSDYSFL 1269
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+ Y F P++ D Y C+V H L +P + W
Sbjct: 1270 KINYLTFLPSDDDVYDCKVEHWGLDEPLLKHW 1365
>emb|Z27164.1|PFMHCDR02 P.fulvus MHC class II DRB gene, exon 2 (partial)
Length = 1092
Score = 63.2 bits (152), Expect = 4e-09
Identities = 34/92 (36%), Positives = 45/92 (47%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHS-DLSFSKDWSFY 83
PK+ VY N L C V+GF+P +IEV L+NG E E S L + DW+F
Sbjct: 384 PKVTVYPAKTQPLQHHNLLVCSVNGFYPGNIEVKWLRNGREEEAAEDSTGLIQNGDWTFQ 563
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H + P V+W
Sbjct: 564 TLVMLEIVPQSGEVYTCQVEHPSRMSPLTVEW 659
>gb|M93431.1|SHPMHCDQA2 Ovis aries Merino MHC OVAR-DQ-ALPHA-2.2 (MHC OVAR-DQA2) mRNA,
complete cds
Length = 1117
Score = 63.2 bits (152), Expect = 4e-09
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 21 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKD 79
I P++ V+S+ P G+ N L C+V P I + LKNG + E V + D
Sbjct: 364 INEVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHAVTEGVSETSFLPKDD 543
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
SF + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 544 HSFLKIGYLTFLPSDDDVYYCKVEHWGLEEPLLKHWEPEI 663
>dbj|D50045.1|BOVMQ9 Bovine mRNA for MHC class II DQA2, complete cds
Length = 1192
Score = 63.2 bits (152), Expect = 4e-09
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 21 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKD 79
I P++ V+S+ P G+ N L C+V P I + LKNG + E V + D
Sbjct: 363 INEVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHAVTEGVSETSFLPKDD 542
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
SF + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 543 HSFLKIGYLTFLPSDNDIYDCKVEHWGLDEPLLKHWEPEV 662
>dbj|D50046.1|BOVAQ161B Bovine AQ16-1 mRNA for MHC class II DQA2 (BoLA-DQA2), partial cds
Length = 906
Score = 63.2 bits (152), Expect = 4e-09
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 21 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKD 79
I P++ V+S+ P G+ N L C+V P I + LKNG + E V + D
Sbjct: 111 INEVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHAVTEGVSETSFLPKDD 290
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
SF + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 291 HSFLKIGYLTFLPSDNDIYDCKVEHWGLDEPLLKHWEPEV 410
>emb|X80483.1|HSMHCDPA1 H.sapiens MHC class II HLA-DPA1 gene 0401
Length = 282
Score = 62.8 bits (151), Expect = 5e-09
Identities = 33/92 (35%), Positives = 48/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+ + E G+ N L C++ F P + V L NGE + E V S D+SF+
Sbjct: 6 PEVTVFPKEAVELGQPNTLICHIDKFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFH 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+Y F P+ +D Y CRV H L QP + W
Sbjct: 186 KFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHW 281
>gb|M57466.1|HUMMHDPL Human MHC class II HLA-DP light chain mRNA, complete cds
Length = 1104
Score = 62.8 bits (151), Expect = 5e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK+ V N L C+V+ F+PS I+V NG E V ++L + DW+F
Sbjct: 422 PKVNVSPSKKGPLQHHNLLVCHVTDFYPSSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQ 601
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E TP + D Y C+V H +L P V+W
Sbjct: 602 ILVMLEMTPQQGDVYICQVEHTSLDSPVTVEW 697
>gb|U47339.1|CFMHCDRB03 Canis familiaris MHC class II DLA DRB1 beta chain, complete cds
Length = 2880
Score = 62.8 bits (151), Expect = 5e-09
Identities = 33/96 (34%), Positives = 48/96 (49%), Gaps = 1/96 (1%)
Frame = +3
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P + VY N L C V+GF+P IEV L+NG+ E V + L + DW+F
Sbjct: 318 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 497
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+L E P + Y C+V H +L+ P V+W +
Sbjct: 498 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEWSEKL 605
>gb|M29611.1|DOGMHDRBA C.familiaris MHC class II DLA-DR-beta-1 gene, complete cds
Length = 1165
Score = 62.4 bits (150), Expect = 7e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P + VY N L C V+GF+P IEV L+NG+ E V + L + DW+F
Sbjct: 415 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 594
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E P + Y C+V H +L+ P V+W
Sbjct: 595 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 690
>emb|Y14020.1|BIY14020 Bos indicus BoLA DQA3 gene
Length = 885
Score = 62.4 bits (150), Expect = 7e-09
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 21 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKD 79
I P++ V+S+ P + N L C+V P I + L+NG + E V + D
Sbjct: 319 INEVPEVTVFSKSPVMLSQPNTLICHVDNIFPPVINITWLRNGHSVTEHVSETSFLLRSD 498
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+S+ + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 499 YSYLKISYLPFRPSDDDVYDCKVEHWGLDEPLLKHWEPEI 618
>gb|M57536.1|DOGMHCDW8 Canine MHC class II DLA-DRB mRNA (Dw8), partial cds
Length = 771
Score = 62.4 bits (150), Expect = 7e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P + VY N L C V+GF+P IEV L+NG+ E V + L + DW+F
Sbjct: 364 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 543
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E P + Y C+V H +L+ P V+W
Sbjct: 544 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 639
>gb|M57529.1|DOGMHCDW4 Canine MHC class II DLA-DRB mRNA (Dw4), partial cds
Length = 771
Score = 62.4 bits (150), Expect = 7e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P + VY N L C V+GF+P IEV L+NG+ E V + L + DW+F
Sbjct: 364 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 543
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E P + Y C+V H +L+ P V+W
Sbjct: 544 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 639
>gb|M57531.1|DOGMHCD9 Canine MHC class II DLA-DRB mRNA (D9), partial cds
Length = 771
Score = 62.4 bits (150), Expect = 7e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P + VY N L C V+GF+P IEV L+NG+ E V + L + DW+F
Sbjct: 364 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 543
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E P + Y C+V H +L+ P V+W
Sbjct: 544 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 639
>gb|M57535.1|DOGMHCD8 Canine MHC class II DLA-DRB mRNA (D8), partial cds
Length = 771
Score = 62.4 bits (150), Expect = 7e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P + VY N L C V+GF+P IEV L+NG+ E V + L + DW+F
Sbjct: 364 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 543
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E P + Y C+V H +L+ P V+W
Sbjct: 544 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 639
>gb|M57533.1|DOGMHCD7 Canine MHC class II DLA-DRB mRNA (D7), partial cds
Length = 771
Score = 62.4 bits (150), Expect = 7e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P + VY N L C V+GF+P IEV L+NG+ E V + L + DW+F
Sbjct: 364 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 543
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E P + Y C+V H +L+ P V+W
Sbjct: 544 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 639
>gb|M57534.1|DOGMHCD6 Canine MHC class II DLA-DRB mRNA (D6), partial cds
Length = 771
Score = 62.4 bits (150), Expect = 7e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P + VY N L C V+GF+P IEV L+NG+ E V + L + DW+F
Sbjct: 364 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 543
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E P + Y C+V H +L+ P V+W
Sbjct: 544 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 639
>gb|M57532.1|DOGMHCD4 Canine MHC class II DLA-DRB mRNA (D4), partial cds
Length = 771
Score = 62.4 bits (150), Expect = 7e-09
Identities = 33/92 (35%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P + VY N L C V+GF+P IEV L+NG+ E V + L + DW+F
Sbjct: 364 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 543
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+L E P + Y C+V H +L+ P V+W
Sbjct: 544 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEW 639
>emb|Y14021.1|BIY14021 Bos indicus BoLA DQA3 gene, isolate E223
Length = 888
Score = 62.0 bits (149), Expect = 9e-09
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 21 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKD 79
I P++ V+S+ P + N L C+V P I + L+NG + E V + D
Sbjct: 322 INEVPEVTVFSKSPVMLSQPNTLICHVDNIFPPVINITWLRNGHSVTEHVSETSFLLRSD 501
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+S+ + Y F P++ D Y C+V H L +P + W+ ++
Sbjct: 502 YSYLKISYLPFHPSDDDVYDCKVEHWGLDEPLLKHWEPEI 621
>dbj|D50047.1|BOVKQ217C Bovine KQ217 mRNA for MHC class II DQA2 (BoLA-DQA2), partial cds
Length = 1500
Score = 62.0 bits (149), Expect = 9e-09
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +1
Query: 21 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKD 79
I P++ V+S+ P G+ N L C+V P I + LKNG + E V + D
Sbjct: 328 INEVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHAVTEGVSETSFLPKDD 507
Query: 80 WSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
SF + Y F P++ D Y C+V H L +P + W
Sbjct: 508 HSFLKIGYLTFLPSDNDIYDCKVEHWGLDEPLLKHW 615
>dbj|D50042.1|D50037S3 Xenopus laevis MHC class II beta-chain gene, exon 3
Length = 557
Score = 62.0 bits (149), Expect = 9e-09
Identities = 32/92 (34%), Positives = 48/92 (51%), Gaps = 1/92 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
P +++ + + N + C+V GF P I+V LKNG E E+V S+L + DW+F
Sbjct: 149 PNVKIVNTKTLDLEHENLITCFVGGFFPPLIKVTWLKNGIEEGEQVTSSELLQNGDWTFE 328
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
+ E T D + CRV H +L QP + W
Sbjct: 329 IHVMLETTIKHGDTFTCRVEHSSLQQPVYLNW 424
>gb|U77896.1|OCU77896 Oryctolagus cuniculus histocompatibility antigen DM heterodimer
light chain (RLA-DMB) mRNA, complete cds
Length = 1150
Score = 62.0 bits (149), Expect = 9e-09
Identities = 30/97 (30%), Positives = 49/97 (49%), Gaps = 4/97 (4%)
Frame = +2
Query: 23 RTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSK---- 78
R P +QV P + L CYV GF+P+D+ + +KNG+ + + HS + +
Sbjct: 518 RPPTVQVAQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLV--IPHSSMEKTAQPNG 691
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
DW++ L + TP+ D Y C V H+ +P + W
Sbjct: 692 DWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILQNW 802
>emb|X03024.1|HSSB3B3 Human gene fragment for HLA class II SB 3-beta chain (exon 3)
Length = 301
Score = 62.0 bits (149), Expect = 9e-09
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +2
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFY 83
PK+ V N L C+V+ F+P I+V NG E V ++L + DW+F
Sbjct: 14 PKVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQ 193
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+L E TP + D Y C+V H +L P V+W +
Sbjct: 194 ILVMLEMTPQQGDVYICQVEHTSLDSPVTVEWSESL 301
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 12, 2002 2:19 AM
Number of letters in database: 566,364,212
Number of sequences in database: 1,171,752
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 666,985,077
Number of Sequences: 1171752
Number of extensions: 9062087
Number of successful extensions: 43900
Number of sequences better than 10.0: 3762
Number of HSP's better than 10.0 without gapping: 39001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41779
length of query: 119
length of database: 1,620,443,836
effective HSP length: 95
effective length of query: 24
effective length of database: 1,509,127,396
effective search space: 36219057504
effective search space used: 36219057504
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)