TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(943 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,164,257 sequences; 587,334,133 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_001812.1| Homo sapiens centromere protein C 1 (CENPC... 1761 0.0
gb|M95724.1|HUMCENPRO H.sapiens centromere autoantigen C (C... 1761 0.0
ref|XM_084163.1| Homo sapiens centromere protein C 1 (CENPC... 1754 0.0
ref|XM_017019.2| Homo sapiens similar to centromere protein... 770 0.0
gb|AC010201.18| Homo sapiens 12 BAC RP11-1109F11 (Roswell P... 770 0.0
ref|NM_007683.1| Mus musculus centromere autoantigen C (Cen... 736 0.0
gb|U03113.1|MMCENPC Mus musculus Swiss centromeric protein ... 736 0.0
gb|U35657.1|OAU35657 Ovis aries centromere protein C (CENP-... 451 e-124
gb|AC104806.3| Homo sapiens chromosome 4 clone RP11-584P21,... 419 e-115
dbj|AK011004.1|AK011004 Mus musculus 13 days embryo liver c... 333 7e-89
dbj|AB004649.1|AB004649 Gallus gallus mRNA for CENP-C, comp... 200 5e-49
dbj|AB004650.1|AB004650 Chicken mRNA for CENP-C, clone CENP... 200 5e-49
dbj|AB042324.1|AB042324 Gallus gallus CENP-C gene for centr... 72 3e-10
emb|AL645565.3|AL645565 Human DNA sequence from clone RP11-... 49 2e-06
emb|AL355931.1|NCB3E4 Neurospora crassa DNA linkage group I... 47 8e-04
emb|Z28089.1|SCYKL089W S.cerevisiae chromosome XI reading f... 50 8e-04
emb|Z18294.1|SCMIF2A Saccharomyces cerevisiae of MIF2 gene 50 8e-04
emb|AL109834.1|SPBC1861 S.pombe chromosome II cosmid c1861 47 0.012
gb|L30105.1|MUSCENP Mus musculus (clone xs72) Cenpc pseudog... 45 0.046
gb|AC005334.1|AC005334 Drosophila melanogaster DNA sequence... 44 0.10
gb|AF221715.1|AF221715 Drosophila melanogaster split ends l... 44 0.10
gb|AF184612.1|AF184612 Drosophila melanogaster split ends m... 44 0.10
gb|AC008371.4| Drosophila melanogaster, chromosome 2L, regi... 44 0.10
gb|AE003590.2|AE003590 Drosophila melanogaster genomic scaf... 44 0.10
ref|NM_079979.1| Drosophila melanogaster split ends (spen),... 44 0.10
gb|AF188205.1|AF188205 Drosophila melanogaster Spen RNP mot... 44 0.10
gb|AF134186.1|AF134186 Caenorhabditis elegans XNP-1 (xnp-1)... 43 0.18
gb|U41510.1| Caenorhabditis elegans cosmid ZC449, complete ... 43 0.18
ref|NM_059022.1| helicase 43 0.18
dbj|AK020042.1|AK020042 Mus musculus 13 days embryo forelim... 42 0.23
gb|BC005403.1|BC005403 Homo sapiens, Similar to hypothetica... 41 0.51
dbj|AP000537.1|AP000537 Homo sapiens genomic DNA, chromosom... 41 0.51
gb|AF033371.1|AF033371 Hepatitis C virus isolate R6 from no... 41 0.51
gb|U41849.1|SCU41849 Saccharomyces cerevisiae chromosome XV... 41 0.67
gb|U23819.1|SCU23819 Saccharomyces cerevisiae multidomain v... 41 0.67
gb|AF151723.1|AF151723 Homo sapiens centromere protein C (C... 40 0.87
ref|NM_076456.1| Caenorhabditis elegans 40 0.87
gb|AC010109.5| Drosophila melanogaster 3L BAC RPCI98-9B4 (R... 40 1.1
gb|AY052127.1| Drosophila melanogaster SD07741 full length ... 39 1.9
ref|NM_058787.1| Caenorhabditis elegans 39 2.5
gb|AF054253.1|AF054253 Hepatitis C virus HC-J4, pCV-J4L3 po... 39 3.3
gb|BC015052.1|BC015052 Homo sapiens, clone MGC:9613 IMAGE:3... 38 4.3
gb|AF129857.2|AF129857 Zea mays CENPCA protein (CenpcA) mRN... 38 4.3
dbj|D87440.1|D87440 Human mRNA for KIAA0252 gene, partial cds 38 4.3
ref|XM_031646.3| Homo sapiens similar to Plasmodium falcipa... 38 4.3
gb|AF129859.1|AF129859 Zea mays CENPCC protein (CenpcC) mRN... 38 4.3
gb|AF207756.1|AF207756 Hepatitis C virus strain MD15 comple... 38 4.3
gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, comple... 38 4.3
emb|X88927.1|XLNOPP180 X.laevis mRNA for xNopp180 38 5.7
emb|AL031323.1|SPCC962 S.pombe chromosome III cosmid c962 38 5.7
dbj|AB031034.1|AB031034 Schizosaccharomyces pombe cut17+ mR... 38 5.7
gb|AC010034.6| Drosophila melanogaster 3L BAC RP98-4A21 (Ro... 37 7.4
gb|AC022344.2|AC022344 Drosophila melanogaster, chromosome ... 37 7.4
gb|AC003053.1|AC003053 Drosophila melanogaster DNA sequence... 37 7.4
gb|AC092400.1|AC092400 Drosophila melanogaster, chromosome ... 37 7.4
gb|AC007587.11| Drosophila melanogaster, chromosome 2R, reg... 37 7.4
gb|AC005713.8|AC005713 Drosophila melanogaster, chromosome ... 37 7.4
gb|AC004276.1|AC004276 Drosophila melanogaster DNA sequence... 37 7.4
gb|AC005554.2|AC005554 Drosophila melanogaster, chromosome ... 37 7.4
gb|AC092231.1|AC092231 Drosophila melanogaster, chromosome ... 37 7.4
ref|NM_026649.1| Mus musculus RIKEN cDNA 4930441O14 gene (4... 37 7.4
gb|AC007416.12|AC007416 Drosophila melanogaster, chromosome... 37 7.4
dbj|AK019608.1|AK019608 Mus musculus adult male testis cDNA... 37 7.4
gb|AC010036.5| Drosophila melanogaster 3L BAC RP98-7K20 (Ro... 37 7.4
gb|AC092396.1|AC092396 Drosophila melanogaster, chromosome ... 37 7.4
gb|AC093957.2| Drosophila melanogaster 3L BAC RP98-14E19 (R... 37 7.4
gb|AC008143.5|AC008143 Drosophila melanogaster, chromosome ... 37 7.4
emb|X02599.1|DMCOPIA Drosophila melanogaster transposable e... 37 7.4
ref|NG_000277.1| Drosophila melanogaster G protein-coupled ... 37 7.4
gb|AC092186.1|AC092186 Drosophila melanogaster, chromosome ... 37 7.4
dbj|D10880.1|DROCOPIA Drosophila simulans copia gene, compl... 37 7.4
emb|X54147.1|DMCOPIAV Drosophila copia DNA encoding virus-l... 37 7.4
gb|AC099022.1| Drosophila melanogaster, chromosome 2L, regi... 37 7.4
gb|AC093103.1| Drosophila melanogaster, chromosome 2L, regi... 37 7.4
gb|AC008334.7|AC008334 Drosophila melanogaster, chromosome ... 37 7.4
ref|XM_082643.1| bent, mRNA 37 7.4
ref|XM_017037.2| Homo sapiens suppressor of Ty 6 homolog (S... 37 7.4
gb|AC007146.14|AC007146 Drosophila melanogaster, chromosome... 37 7.4
gb|AC005647.3|AC005647 Drosophila melanogaster, chromosome ... 37 7.4
gb|AF321299.1|AF321299 Caenorhabditis elegans CENP-C-like p... 37 7.4
gb|AC009202.7| Drosophila melanogaster, chromosome 2L, regi... 37 7.4
gb|AC108481.1| Drosophila melanogaster 3L BAC RP98-1O19 (Ro... 37 7.4
gb|AC018484.4| Drosophila melanogaster, chromosome 2L, regi... 37 7.4
emb|X02600.1|DMVLPHR Drosophila melanogaster virus like par... 37 7.4
ref|NM_003170.1| Homo sapiens suppressor of Ty 6 homolog (S... 37 7.4
gb|AC008097.4|AC008097 Drosophila melanogaster, chromosome ... 37 7.4
gb|AE003411.1|DROSADH05 Drosophila melanogaster, chromosome... 37 7.4
gb|U46691.1|HSU46691 Human putative chromatin structure reg... 37 7.4
gb|M11240.1|DROTNCOP D.melanogaster copia element inserted ... 37 7.4
gb|AY075587.1| Drosophila melanogaster SD10530 full length ... 37 7.4
ref|NG_000514.1| Drosophila melanogaster toucan (toc) on ch... 37 7.4
gb|AF295077.1|AF295077 Homo sapiens ZFN1 gene, complete seq... 37 7.4
gb|AC092246.1|AC092246 Drosophila melanogaster, chromosome ... 37 7.4
gb|AC009393.4|AC009393 Drosophila melanogaster, chromosome ... 37 7.4
gb|AC099027.1| Drosophila melanogaster, chromosome 2R, regi... 37 7.4
gb|AC008346.5|AC008346 Drosophila melanogaster, chromosome ... 37 7.4
dbj|D79984.1|D79984 Human mRNA for KIAA0162 gene, complete cds 37 7.4
gb|AC010688.5| Drosophila melanogaster 3L BAC RP98-11G5 (Ro... 37 7.4
ref|NM_058843.1| Caenorhabditis elegans 37 7.4
gb|AC013247.8| Drosophila melanogaster, chromosome 2R, regi... 37 7.4
gb|AC008221.4|AC008221 Drosophila melanogaster, chromosome ... 37 7.4
ref|NG_000807.1| Drosophila melanogaster foraging (for) on ... 37 7.4
gb|AC023720.3| Drosophila melanogaster 3L BAC RP98-7F15 (Ro... 37 7.4
gb|AE003415.1|DROSADH09 Drosophila melanogaster, chromosome... 37 7.4
gb|AC004445.1|AC004445 Drosophila melanogaster DNA sequence... 37 7.4
gb|AC008138.4|AC008138 Drosophila melanogaster, chromosome ... 37 7.4
gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome ... 37 7.4
gb|AC021639.5| Drosophila melanogaster, chromosome X, regio... 37 7.4
gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome ... 37 7.4
gb|AE003633.2|AE003633 Drosophila melanogaster genomic scaf... 37 7.4
gb|AC004735.1|AC004735 Drosophila melanogaster, chromosome ... 37 9.6
gb|AC006215.1|AC006215 Drosophila melanogaster, chromosome ... 37 9.6
gb|AC093197.1| Drosophila melanogaster, chromosome 2L, regi... 37 9.6
gb|AF269819.1|AF269819 Staphylococcus epidermidis strain SR... 37 9.6
gb|AF129858.1|AF129858 Zea mays CENPCB protein (CenpcB) mRN... 37 9.6
ref|NM_009297.1| Mus musculus suppressor of Ty 6 homolog (S... 37 9.6
gb|U40375.1|MMU40375 Mus musculus Supt6h mRNA, complete cds 37 9.6
gb|AE003666.3|AE003666 Drosophila melanogaster genomic scaf... 37 9.6
>ref|NM_001812.1| Homo sapiens centromere protein C 1 (CENPC1), mRNA
Length = 3132
Score = 1761 bits (4560), Expect = 0.0
Identities = 888/943 (94%), Positives = 888/943 (94%)
Frame = +1
Query: 1 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 60
MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
Sbjct: 157 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 336
Query: 61 NSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVHQKI 120
NSTRKIKDTCIQSPSKECQ EASLQFVVEPSEATNRSVQAHEVHQKI
Sbjct: 337 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI 516
Query: 121 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 180
LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK
Sbjct: 517 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 696
Query: 181 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS 240
RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
Sbjct: 697 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS 876
Query: 241 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE 300
GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
Sbjct: 877 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE 1056
Query: 301 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN 360
DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN
Sbjct: 1057 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN 1236
Query: 361 DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK 420
DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
Sbjct: 1237 DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK 1416
Query: 421 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP 480
QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
Sbjct: 1417 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP 1596
Query: 481 VGXXXXXXXXXXXXXXXXXXXXXXXXXLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV 540
VG LVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
Sbjct: 1597 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV 1776
Query: 541 YSNSSVRNELPMHHXXXXXXXXXXXXXXXXIRKKTIPLKRQKTATKGNQRVQKFLNAEGS 600
YSNSSVRNELPMHH IRKKTIPLKRQKTATKGNQRVQKFLNAEGS
Sbjct: 1777 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS 1956
Query: 601 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG 660
GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
Sbjct: 1957 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG 2136
Query: 661 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP 720
YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
Sbjct: 2137 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP 2316
Query: 721 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK 780
KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
Sbjct: 2317 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK 2496
Query: 781 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL 840
RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
Sbjct: 2497 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL 2676
Query: 841 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL 900
VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL
Sbjct: 2677 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL 2856
Query: 901 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 943
CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR
Sbjct: 2857 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 2985
>gb|M95724.1|HUMCENPRO H.sapiens centromere autoantigen C (CENPC) mRNA, complete cds
Length = 3132
Score = 1761 bits (4560), Expect = 0.0
Identities = 888/943 (94%), Positives = 888/943 (94%)
Frame = +1
Query: 1 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 60
MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
Sbjct: 157 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 336
Query: 61 NSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVHQKI 120
NSTRKIKDTCIQSPSKECQ EASLQFVVEPSEATNRSVQAHEVHQKI
Sbjct: 337 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI 516
Query: 121 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 180
LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK
Sbjct: 517 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 696
Query: 181 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS 240
RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
Sbjct: 697 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS 876
Query: 241 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE 300
GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
Sbjct: 877 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE 1056
Query: 301 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN 360
DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN
Sbjct: 1057 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN 1236
Query: 361 DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK 420
DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
Sbjct: 1237 DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK 1416
Query: 421 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP 480
QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
Sbjct: 1417 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP 1596
Query: 481 VGXXXXXXXXXXXXXXXXXXXXXXXXXLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV 540
VG LVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
Sbjct: 1597 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV 1776
Query: 541 YSNSSVRNELPMHHXXXXXXXXXXXXXXXXIRKKTIPLKRQKTATKGNQRVQKFLNAEGS 600
YSNSSVRNELPMHH IRKKTIPLKRQKTATKGNQRVQKFLNAEGS
Sbjct: 1777 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS 1956
Query: 601 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG 660
GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
Sbjct: 1957 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG 2136
Query: 661 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP 720
YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
Sbjct: 2137 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP 2316
Query: 721 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK 780
KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
Sbjct: 2317 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK 2496
Query: 781 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL 840
RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
Sbjct: 2497 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL 2676
Query: 841 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL 900
VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL
Sbjct: 2677 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL 2856
Query: 901 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 943
CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR
Sbjct: 2857 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 2985
>ref|XM_084163.1| Homo sapiens centromere protein C 1 (CENPC1), mRNA
Length = 3115
Score = 1754 bits (4543), Expect = 0.0
Identities = 885/943 (93%), Positives = 886/943 (93%)
Frame = +1
Query: 1 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 60
MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
Sbjct: 157 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 336
Query: 61 NSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVHQKI 120
NSTRKIKDTCIQSPSKECQ EASLQFVVEPSEATNRSVQAHEVHQKI
Sbjct: 337 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI 516
Query: 121 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 180
LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSA+K
Sbjct: 517 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK 696
Query: 181 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS 240
RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
Sbjct: 697 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS 876
Query: 241 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE 300
GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
Sbjct: 877 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE 1056
Query: 301 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN 360
DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTAL QGRKSREKHHNILPKTLAN
Sbjct: 1057 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKHHNILPKTLAN 1236
Query: 361 DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK 420
DKHSHKPHPVETSQPSDKTVLDTSYALI ETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
Sbjct: 1237 DKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK 1416
Query: 421 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP 480
QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
Sbjct: 1417 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP 1596
Query: 481 VGXXXXXXXXXXXXXXXXXXXXXXXXXLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV 540
VG LVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
Sbjct: 1597 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV 1776
Query: 541 YSNSSVRNELPMHHXXXXXXXXXXXXXXXXIRKKTIPLKRQKTATKGNQRVQKFLNAEGS 600
YSNSSVRNELPMHH IRKKTIPLKRQKTATKGNQRVQKFLNAEGS
Sbjct: 1777 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS 1956
Query: 601 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG 660
GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
Sbjct: 1957 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG 2136
Query: 661 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP 720
YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
Sbjct: 2137 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP 2316
Query: 721 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK 780
KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
Sbjct: 2317 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK 2496
Query: 781 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL 840
RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
Sbjct: 2497 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL 2676
Query: 841 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL 900
VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL
Sbjct: 2677 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL 2856
Query: 901 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 943
CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR
Sbjct: 2857 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 2985
>ref|XM_017019.2| Homo sapiens similar to centromere protein C 1 (H. sapiens)
(LOC144645), mRNA
Length = 3131
Score = 770 bits (1987), Expect(3) = 0.0
Identities = 391/478 (81%), Positives = 409/478 (84%), Gaps = 2/478 (0%)
Frame = +1
Query: 318 ITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLANDKHSHKPHPVETSQPSD 377
ITIPRKAG LKQRTISPAESTAL Q RKSREKHHNIL KTLANDKHSHKPH VETSQPSD
Sbjct: 1120 ITIPRKAGPLKQRTISPAESTALLQDRKSREKHHNILAKTLANDKHSHKPHLVETSQPSD 1299
Query: 378 KTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQKQRRKFMAKPAEEQLDVG 437
KTVLDTSYAL ET N+ RSTKYEMYSKNAEK S SKRTIKQKQRRKFMAKPAEEQLDVG
Sbjct: 1300 KTVLDTSYALTGETENDCRSTKYEMYSKNAEKSSGSKRTIKQKQRRKFMAKPAEEQLDVG 1479
Query: 438 QSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPPVGXXXXXXXXXXXXXXX 497
Q+KDENIH SHITQD+FQRNSDRNMEE EEMGNDC SK QMPPVG
Sbjct: 1480 QTKDENIHMSHITQDKFQRNSDRNMEEREEMGNDCASKIQMPPVGSKKSSTRKDKEESKK 1659
Query: 498 XXXXXXXXXXLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPVYSNSSVRNELPMHHXXX 557
LV EEVTSTVT+SRRISR PS+WWVVKSEESPVYSNSS+RNELP+HH
Sbjct: 1660 KRFSSESKNKLVSEEVTSTVTRSRRISRHPSNWWVVKSEESPVYSNSSIRNELPLHHNSR 1839
Query: 558 XXXXXXXXXXXXXIRKKTIPLKRQKTATKGNQRVQKFLNAEGSGGIVGHDEISRCSLSEP 617
I KKTIPLKRQKTATK +QRVQKFLNA+GSGGI+GHDEIS C LSEP
Sbjct: 1840 QKSAKKTNQSSKNIGKKTIPLKRQKTATKDSQRVQKFLNAKGSGGIIGHDEISSCFLSEP 2019
Query: 618 LESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSGYTCNIPTESNLDSGEHK 677
LESDEADLAK+KNLDCSRST SSKNEDNIMTAQNVPLKPQTSGYTCN PTESNLDSGEHK
Sbjct: 2020 LESDEADLAKRKNLDCSRSTGSSKNEDNIMTAQNVPLKPQTSGYTCNTPTESNLDSGEHK 2199
Query: 678 TSVLEESGPSRLNNNYLMSGK--NDVDDEEVHGSSDDSKQSKVIPKNRIHHKLVLPSNTP 735
TSVLEESGPSRLNNNYLMSGK NDVDDEEV GSSDDSK++KVIPKNRIHHKLVLPSNTP
Sbjct: 2200 TSVLEESGPSRLNNNYLMSGKNNNDVDDEEVPGSSDDSKRTKVIPKNRIHHKLVLPSNTP 2379
Query: 736 NVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSKRKAKENIGKVNKK 793
NVRRTKRTRLKPLEYWRG++IDYQGRPSGGFVISG+LSP ISSKRKA+ENIGKV+KK
Sbjct: 2380 NVRRTKRTRLKPLEYWRGQQIDYQGRPSGGFVISGILSPGKISSKRKARENIGKVDKK 2553
Score = 381 bits (978), Expect(3) = 0.0
Identities = 196/221 (88%), Positives = 202/221 (90%)
Frame = +2
Query: 1 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 60
MA SGLDHLKNGYRRRFC+PSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSV
Sbjct: 158 MAVSGLDHLKNGYRRRFCQPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVL 337
Query: 61 NSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVHQKI 120
NSTRKIKDTCIQSPSKECQ EASLQFVVEPSEATNRSVQAHEV QKI
Sbjct: 338 NSTRKIKDTCIQSPSKECQKSHPKSVPLSSRKKEASLQFVVEPSEATNRSVQAHEVRQKI 517
Query: 121 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 180
LATDVSSKNTPD KK+ SRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSA+K
Sbjct: 518 LATDVSSKNTPDLKKM*SRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK 697
Query: 181 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEID 221
RETYTFENSVNMLPSSTEVS+KTKKRLNF+DKV+LKKIEID
Sbjct: 698 RETYTFENSVNMLPSSTEVSLKTKKRLNFEDKVILKKIEID 820
Score = 295 bits (756), Expect = 1e-77
Identities = 144/164 (87%), Positives = 151/164 (91%)
Frame = +2
Query: 780 KRKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMD 839
K + ++ + K+ KKSNKKRICLDNDERKT+LMVNLGIPLGDPLQP VKDPETREIILMD
Sbjct: 2513 KGRQEKILEKLTKKSNKKRICLDNDERKTSLMVNLGIPLGDPLQPAMVKDPETREIILMD 2692
Query: 840 LVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDL 899
LVRPQDTYQFFVKHGELKVY TLDTPFFSTGKLIL PQEEKGKQHVGQDIL FYVNFGDL
Sbjct: 2693 LVRPQDTYQFFVKHGELKVYNTLDTPFFSTGKLILRPQEEKGKQHVGQDILFFYVNFGDL 2872
Query: 900 LCTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 943
CTLHE PYI+STGDSFYVPSGNYYNIKNL NEESVLLFTQIKR
Sbjct: 2873 SCTLHEIPYIISTGDSFYVPSGNYYNIKNLLNEESVLLFTQIKR 3004
Score = 186 bits (472), Expect(3) = 0.0
Identities = 94/111 (84%), Positives = 98/111 (87%)
Frame = +3
Query: 216 KKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSE 275
K IEIDNKVSD+EDKTSEGQERKPSGSSQNRIR SEYEIQ QAKKSFSTLFLETVKRKSE
Sbjct: 813 K*IEIDNKVSDKEDKTSEGQERKPSGSSQNRIRHSEYEIQ*QAKKSFSTLFLETVKRKSE 992
Query: 276 SSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGS 326
SSPIVRH PPHSCPPDD KLIEDEFIID+SDQSFASRSW +K G+
Sbjct: 993 SSPIVRHGGIVPPHSCPPDDMKLIEDEFIIDKSDQSFASRSWDYYTKKGGA 1145
>gb|AC010201.18| Homo sapiens 12 BAC RP11-1109F11 (Roswell Park Cancer Institute Human
BAC Library) complete sequence
Length = 168851
Score = 770 bits (1987), Expect(3) = 0.0
Identities = 391/478 (81%), Positives = 409/478 (84%), Gaps = 2/478 (0%)
Frame = -1
Query: 318 ITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLANDKHSHKPHPVETSQPSD 377
ITIPRKAG LKQRTISPAESTAL Q RKSREKHHNIL KTLANDKHSHKPH VETSQPSD
Sbjct: 18530 ITIPRKAGPLKQRTISPAESTALLQDRKSREKHHNILAKTLANDKHSHKPHLVETSQPSD 18351
Query: 378 KTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQKQRRKFMAKPAEEQLDVG 437
KTVLDTSYAL ET N+ RSTKYEMYSKNAEK S SKRTIKQKQRRKFMAKPAEEQLDVG
Sbjct: 18350 KTVLDTSYALTGETENDCRSTKYEMYSKNAEKSSGSKRTIKQKQRRKFMAKPAEEQLDVG 18171
Query: 438 QSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPPVGXXXXXXXXXXXXXXX 497
Q+KDENIH SHITQD+FQRNSDRNMEE EEMGNDC SK QMPPVG
Sbjct: 18170 QTKDENIHMSHITQDKFQRNSDRNMEEREEMGNDCASKIQMPPVGSKKSSTRKDKEESKK 17991
Query: 498 XXXXXXXXXXLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPVYSNSSVRNELPMHHXXX 557
LV EEVTSTVT+SRRISR PS+WWVVKSEESPVYSNSS+RNELP+HH
Sbjct: 17990 KRFSSESKNKLVSEEVTSTVTRSRRISRHPSNWWVVKSEESPVYSNSSIRNELPLHHNSR 17811
Query: 558 XXXXXXXXXXXXXIRKKTIPLKRQKTATKGNQRVQKFLNAEGSGGIVGHDEISRCSLSEP 617
I KKTIPLKRQKTATK +QRVQKFLNA+GSGGI+GHDEIS C LSEP
Sbjct: 17810 QKSAKKTNQSSKNIGKKTIPLKRQKTATKDSQRVQKFLNAKGSGGIIGHDEISSCFLSEP 17631
Query: 618 LESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSGYTCNIPTESNLDSGEHK 677
LESDEADLAK+KNLDCSRST SSKNEDNIMTAQNVPLKPQTSGYTCN PTESNLDSGEHK
Sbjct: 17630 LESDEADLAKRKNLDCSRSTGSSKNEDNIMTAQNVPLKPQTSGYTCNTPTESNLDSGEHK 17451
Query: 678 TSVLEESGPSRLNNNYLMSGK--NDVDDEEVHGSSDDSKQSKVIPKNRIHHKLVLPSNTP 735
TSVLEESGPSRLNNNYLMSGK NDVDDEEV GSSDDSK++KVIPKNRIHHKLVLPSNTP
Sbjct: 17450 TSVLEESGPSRLNNNYLMSGKNNNDVDDEEVPGSSDDSKRTKVIPKNRIHHKLVLPSNTP 17271
Query: 736 NVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSKRKAKENIGKVNKK 793
NVRRTKRTRLKPLEYWRG++IDYQGRPSGGFVISG+LSP ISSKRKA+ENIGKV+KK
Sbjct: 17270 NVRRTKRTRLKPLEYWRGQQIDYQGRPSGGFVISGILSPGKISSKRKARENIGKVDKK 17097
Score = 381 bits (978), Expect(3) = 0.0
Identities = 196/221 (88%), Positives = 202/221 (90%)
Frame = -2
Query: 1 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 60
MA SGLDHLKNGYRRRFC+PSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSV
Sbjct: 19492 MAVSGLDHLKNGYRRRFCQPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVL 19313
Query: 61 NSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVHQKI 120
NSTRKIKDTCIQSPSKECQ EASLQFVVEPSEATNRSVQAHEV QKI
Sbjct: 19312 NSTRKIKDTCIQSPSKECQKSHPKSVPLSSRKKEASLQFVVEPSEATNRSVQAHEVRQKI 19133
Query: 121 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 180
LATDVSSKNTPD KK+ SRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSA+K
Sbjct: 19132 LATDVSSKNTPDLKKM*SRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK 18953
Query: 181 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEID 221
RETYTFENSVNMLPSSTEVS+KTKKRLNF+DKV+LKKIEID
Sbjct: 18952 RETYTFENSVNMLPSSTEVSLKTKKRLNFEDKVILKKIEID 18830
Score = 295 bits (756), Expect = 1e-77
Identities = 144/164 (87%), Positives = 151/164 (91%)
Frame = -2
Query: 780 KRKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMD 839
K + ++ + K+ KKSNKKRICLDNDERKT+LMVNLGIPLGDPLQP VKDPETREIILMD
Sbjct: 17137 KGRQEKILEKLTKKSNKKRICLDNDERKTSLMVNLGIPLGDPLQPAMVKDPETREIILMD 16958
Query: 840 LVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDL 899
LVRPQDTYQFFVKHGELKVY TLDTPFFSTGKLIL PQEEKGKQHVGQDIL FYVNFGDL
Sbjct: 16957 LVRPQDTYQFFVKHGELKVYNTLDTPFFSTGKLILRPQEEKGKQHVGQDILFFYVNFGDL 16778
Query: 900 LCTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 943
CTLHE PYI+STGDSFYVPSGNYYNIKNL NEESVLLFTQIKR
Sbjct: 16777 SCTLHEIPYIISTGDSFYVPSGNYYNIKNLLNEESVLLFTQIKR 16646
Score = 186 bits (472), Expect(3) = 0.0
Identities = 94/111 (84%), Positives = 98/111 (87%)
Frame = -3
Query: 216 KKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSE 275
K IEIDNKVSD+EDKTSEGQERKPSGSSQNRIR SEYEIQ QAKKSFSTLFLETVKRKSE
Sbjct: 18837 K*IEIDNKVSDKEDKTSEGQERKPSGSSQNRIRHSEYEIQ*QAKKSFSTLFLETVKRKSE 18658
Query: 276 SSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGS 326
SSPIVRH PPHSCPPDD KLIEDEFIID+SDQSFASRSW +K G+
Sbjct: 18657 SSPIVRHGGIVPPHSCPPDDMKLIEDEFIIDKSDQSFASRSWDYYTKKGGA 18505
>ref|NM_007683.1| Mus musculus centromere autoantigen C (Cenpc), mRNA
Length = 3092
Score = 736 bits (1901), Expect = 0.0
Identities = 452/948 (47%), Positives = 571/948 (59%), Gaps = 5/948 (0%)
Frame = +2
Query: 1 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 60
MA LDHLKN Y RR+CR SRA +I+T++GQN+LEILQDCFE++S A+ F + T+S+
Sbjct: 125 MAMFHLDHLKN-YHRRYCRSSRAPNIHTKKGQNMLEILQDCFEDQSKAS-FLDDFTESLT 298
Query: 61 NSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVHQKI 120
+ST+K K QS SK+C EASLQ EPSEA SVQA+EVH
Sbjct: 299 SSTQKKKANYSQSSSKKCPESHSKPVPVSSRTGEASLQASAEPSEAAGGSVQANEVHHG- 475
Query: 121 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 180
A +E L VGSP VLLDA + Q + +K
Sbjct: 476 ---------------------------ASDELDLCVGSPVVLLDANVNTLQKAASPAGQK 574
Query: 181 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS 240
R + V+ S+ +S KT+KRLNF+DKV E +N V ED S+GQE S
Sbjct: 575 RVASVSRSPVDRQASNKNISFKTRKRLNFEDKVTSSTAETENSVLQVEDNLSKGQEGTSS 754
Query: 241 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE 300
+Q R D ++Q ++KK+FS LFLETVKRKS+SS +VRH A P PP D KL+E
Sbjct: 755 EITQKR-DDLSSDVQSRSKKNFSELFLETVKRKSKSSSVVRHTAAVPFSPPPPSDMKLLE 931
Query: 301 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN 360
DEFIID SD+SF+SR W+ IP K L SP E+TAL QG+KSREK H++ T A
Sbjct: 932 DEFIIDRSDRSFSSRLWVMIPSKDRHLSAHKPSP-ENTALLQGKKSREKSHSLSAMTFAR 1108
Query: 361 DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK 420
+ S K HP+E +Q S + + + DE N+ RS + +M S+ A+ P +RT KQ
Sbjct: 1109 NTQSDKAHPIEEAQLSVEE--NPATTCTDELENDCRSPENKMQSETAKTPPAWERTTKQS 1282
Query: 421 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP 480
QRR K AEE L GQS EN + S+ QD Q NS RNM++ EE+ N+ KKQ P
Sbjct: 1283 QRRVSKPKAAEE-LRKGQSSWENSNVSNTGQDTLQINSKRNMKDCEEVRNEPNPKKQKPA 1459
Query: 481 VGXXXXXXXXXXXXXXXXXXXXXXXXX--LVPEEVTSTVTKSRRISRRPSDWWVVKSEES 538
+ VP++VT T +SRRIS+RPS+WW VKS+ES
Sbjct: 1460 LENKRKTNSTQTNKEKSGKKFFSGGSKNKFVPKKVTLTSRRSRRISQRPSEWWRVKSDES 1639
Query: 539 PVYSNSSVRNELPMHHXXXXXXXXXXXXXXXXIRKKTIPLKRQKTATKGNQRVQKFLNAE 598
V N S N P+ + KK KRQKT + RVQK LN +
Sbjct: 1640 SVDRNPSKENNSPVVYPNKKKQTKRNHVSKRA-GKKPGSSKRQKTEM--SPRVQKSLNVK 1810
Query: 599 GSGGIV-GHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQ 657
SGG V GHD+ SR S +PL+ EAD +K+L SR R K +N+MT+ NV LK
Sbjct: 1811 DSGGTVSGHDDTSR-SQRKPLKIIEAD-PTQKSLAISRPKRGCKYRNNVMTSPNVHLKSH 1984
Query: 658 TSGYTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKN-DVDDEEVHGSSDDSKQS 716
T YT ES +S K SV EESGPSR N + N ++ DE+ S + +S
Sbjct: 1985 TEEYTSKTQMESASNSEMSKRSVWEESGPSRFKNYEMPGSSNSEMGDEQDQKSLHFTTRS 2164
Query: 717 -KVIPKNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPD 775
++P ++HHKLVLPSN+PNVRR+ R RLKPLEYWRGER+DYQ SG V+ ++SP
Sbjct: 2165 FNMVPDKKLHHKLVLPSNSPNVRRSNRIRLKPLEYWRGERVDYQESSSGQLVLE-IISPS 2341
Query: 776 TISSKRKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREI 835
++ +K KA+ N+GKVNKK KK L++ E K + + L + LGDP Q T KDPET E+
Sbjct: 2342 SVPTKIKAQRNLGKVNKKVTKKPTHLNSHE-KAKMELPLDMRLGDPFQATLAKDPETAEL 2518
Query: 836 ILMDLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVN 895
+ MDL+RP+DTY+FFV+ LKV+KTLDT +FSTGKL+LGP EEKGKQHVGQDILVFYVN
Sbjct: 2519 VPMDLIRPRDTYRFFVEQHGLKVFKTLDTIYFSTGKLVLGPYEEKGKQHVGQDILVFYVN 2698
Query: 896 FGDLLCTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 943
FGDLLCTLHETPY L+TGDSFYVPSGN+YNIKNL N ES LLFTQIKR
Sbjct: 2699 FGDLLCTLHETPYKLTTGDSFYVPSGNHYNIKNLLNVESSLLFTQIKR 2842
>gb|U03113.1|MMCENPC Mus musculus Swiss centromeric protein CENPC (CENP-C) mRNA, complete
cds
Length = 3092
Score = 736 bits (1901), Expect = 0.0
Identities = 452/948 (47%), Positives = 571/948 (59%), Gaps = 5/948 (0%)
Frame = +2
Query: 1 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 60
MA LDHLKN Y RR+CR SRA +I+T++GQN+LEILQDCFE++S A+ F + T+S+
Sbjct: 125 MAMFHLDHLKN-YHRRYCRSSRAPNIHTKKGQNMLEILQDCFEDQSKAS-FLDDFTESLT 298
Query: 61 NSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVHQKI 120
+ST+K K QS SK+C EASLQ EPSEA SVQA+EVH
Sbjct: 299 SSTQKKKANYSQSSSKKCPESHSKPVPVSSRTGEASLQASAEPSEAAGGSVQANEVHHG- 475
Query: 121 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 180
A +E L VGSP VLLDA + Q + +K
Sbjct: 476 ---------------------------ASDELDLCVGSPVVLLDANVNTLQKAASPAGQK 574
Query: 181 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS 240
R + V+ S+ +S KT+KRLNF+DKV E +N V ED S+GQE S
Sbjct: 575 RVASVSRSPVDRQASNKNISFKTRKRLNFEDKVTSSTAETENSVLQVEDNLSKGQEGTSS 754
Query: 241 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE 300
+Q R D ++Q ++KK+FS LFLETVKRKS+SS +VRH A P PP D KL+E
Sbjct: 755 EITQKR-DDLSSDVQSRSKKNFSELFLETVKRKSKSSSVVRHTAAVPFSPPPPSDMKLLE 931
Query: 301 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN 360
DEFIID SD+SF+SR W+ IP K L SP E+TAL QG+KSREK H++ T A
Sbjct: 932 DEFIIDRSDRSFSSRLWVMIPSKDRHLSAHKPSP-ENTALLQGKKSREKSHSLSAMTFAR 1108
Query: 361 DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK 420
+ S K HP+E +Q S + + + DE N+ RS + +M S+ A+ P +RT KQ
Sbjct: 1109 NTQSDKAHPIEEAQLSVEE--NPATTCTDELENDCRSPENKMQSETAKTPPAWERTTKQS 1282
Query: 421 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP 480
QRR K AEE L GQS EN + S+ QD Q NS RNM++ EE+ N+ KKQ P
Sbjct: 1283 QRRVSKPKAAEE-LRKGQSSWENSNVSNTGQDTLQINSKRNMKDCEEVRNEPNPKKQKPA 1459
Query: 481 VGXXXXXXXXXXXXXXXXXXXXXXXXX--LVPEEVTSTVTKSRRISRRPSDWWVVKSEES 538
+ VP++VT T +SRRIS+RPS+WW VKS+ES
Sbjct: 1460 LENKRKTNSTQTNKEKSGKKFFSGGSKNKFVPKKVTLTSRRSRRISQRPSEWWRVKSDES 1639
Query: 539 PVYSNSSVRNELPMHHXXXXXXXXXXXXXXXXIRKKTIPLKRQKTATKGNQRVQKFLNAE 598
V N S N P+ + KK KRQKT + RVQK LN +
Sbjct: 1640 SVDRNPSKENNSPVVYPNKKKQTKRNHVSKRA-GKKPGSSKRQKTEM--SPRVQKSLNVK 1810
Query: 599 GSGGIV-GHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQ 657
SGG V GHD+ SR S +PL+ EAD +K+L SR R K +N+MT+ NV LK
Sbjct: 1811 DSGGTVSGHDDTSR-SQRKPLKIIEAD-PTQKSLAISRPKRGCKYRNNVMTSPNVHLKSH 1984
Query: 658 TSGYTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKN-DVDDEEVHGSSDDSKQS 716
T YT ES +S K SV EESGPSR N + N ++ DE+ S + +S
Sbjct: 1985 TEEYTSKTQMESASNSEMSKRSVWEESGPSRFKNYEMPGSSNSEMGDEQDQKSLHFTTRS 2164
Query: 717 -KVIPKNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPD 775
++P ++HHKLVLPSN+PNVRR+ R RLKPLEYWRGER+DYQ SG V+ ++SP
Sbjct: 2165 FNMVPDKKLHHKLVLPSNSPNVRRSNRIRLKPLEYWRGERVDYQESSSGQLVLE-IISPS 2341
Query: 776 TISSKRKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREI 835
++ +K KA+ N+GKVNKK KK L++ E K + + L + LGDP Q T KDPET E+
Sbjct: 2342 SVPTKIKAQRNLGKVNKKVTKKPTHLNSHE-KAKMELPLDMRLGDPFQATLAKDPETAEL 2518
Query: 836 ILMDLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVN 895
+ MDL+RP+DTY+FFV+ LKV+KTLDT +FSTGKL+LGP EEKGKQHVGQDILVFYVN
Sbjct: 2519 VPMDLIRPRDTYRFFVEQHGLKVFKTLDTIYFSTGKLVLGPYEEKGKQHVGQDILVFYVN 2698
Query: 896 FGDLLCTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR 943
FGDLLCTLHETPY L+TGDSFYVPSGN+YNIKNL N ES LLFTQIKR
Sbjct: 2699 FGDLLCTLHETPYKLTTGDSFYVPSGNHYNIKNLLNVESSLLFTQIKR 2842
>gb|U35657.1|OAU35657 Ovis aries centromere protein C (CENP-C) mRNA, partial cds
Length = 1376
Score = 451 bits (1161), Expect = e-124
Identities = 250/421 (59%), Positives = 292/421 (68%), Gaps = 12/421 (2%)
Frame = +1
Query: 534 KSEESPVYSNSSVRNELPMHHXXXXXX-XXXXXXXXXXIRKKTIPLKRQKTATKGNQRVQ 592
KSE+S S+SSVRNEL ++H I KK P K+QK A KG+ Q
Sbjct: 1 KSEQSSFSSSSSVRNELSVYHNSRQKPPAEKTNQSSKNIGKKAAPFKKQKRANKGSSGAQ 180
Query: 593 KFLNAEGSGGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNV 652
L A+ SGG + +E L S+EADLAKKKN + S T SSKN+D+ M AQNV
Sbjct: 181 -VLYAKDSGG----------AQNESLRSNEADLAKKKNPNPSGDTGSSKNQDS-MAAQNV 324
Query: 653 PLKPQTSGYTCNIPTESNLDSGEHKTSVLEESGPS---------RLNNNYLMSGKNDVDD 703
K Q S TC P++SNL +LE G RL N +DVDD
Sbjct: 325 HQKSQMSVETCTTPSKSNL--------ILESLGLQFFGREVTLFRLKNYLTSERHSDVDD 480
Query: 704 EEVHGSSDDSKQS--KVIPKNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGR 761
V + +DS+ P++++HHKLVLPS TPNVRRT RTR KPLEYWRGERIDYQ R
Sbjct: 481 NVVQENLNDSRGEIPDSTPESKMHHKLVLPSYTPNVRRTMRTRSKPLEYWRGERIDYQAR 660
Query: 762 PSGGFVISGVLSPDTISSKRKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDP 821
PSGGFVI G+LSPDT+SSKRKAK N+G++ +N+KRICL+N K MVNL IPLGDP
Sbjct: 661 PSGGFVIGGILSPDTVSSKRKAKGNLGRIITTANRKRICLENAPIKNKFMVNLNIPLGDP 840
Query: 822 LQPTRVKDPETREIILMDLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKG 881
LQPTRVKDPET+E +LMDL+RP+DTYQF V+H ELKVYKTLDTPFFS+GKLI+GP +EKG
Sbjct: 841 LQPTRVKDPETQETVLMDLIRPRDTYQFCVEHDELKVYKTLDTPFFSSGKLIIGPLQEKG 1020
Query: 882 KQHVGQDILVFYVNFGDLLCTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQI 941
KQHVG D LVFYVN G LLCTLHETPYI++TGDSFYVPSGNYYNIKNL NEE VLLFTQI
Sbjct: 1021KQHVGLDTLVFYVNLGYLLCTLHETPYIVTTGDSFYVPSGNYYNIKNLLNEERVLLFTQI 1200
Query: 942 K 942
K
Sbjct: 1201K 1203
>gb|AC104806.3| Homo sapiens chromosome 4 clone RP11-584P21, complete sequence
Length = 147777
Score = 419 bits (1077), Expect = e-115
Identities = 207/217 (95%), Positives = 208/217 (95%)
Frame = -3
Query: 266 FLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAG 325
F E +K SPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAG
Sbjct: 122767 FFELLKVSPCFSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAG 122588
Query: 326 SLKQRTISPAESTALFQGRKSREKHHNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSY 385
SLKQRTISPAESTAL QGRKSREKHHNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSY
Sbjct: 122587 SLKQRTISPAESTALLQGRKSREKHHNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSY 122408
Query: 386 ALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQKQRRKFMAKPAEEQLDVGQSKDENIH 445
ALI ETVNNYRSTKYEMYSKNAEKPSRSKRTIKQKQRRKFMAKPAEEQLDVGQSKDENIH
Sbjct: 122407 ALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQKQRRKFMAKPAEEQLDVGQSKDENIH 122228
Query: 446 TSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPPVG 482
TSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPPVG
Sbjct: 122227 TSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPPVG 122117
Score = 187 bits (476), Expect = 3e-45
Identities = 96/99 (96%), Positives = 98/99 (98%)
Frame = -1
Query: 111 VQAHEVHQKILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVS 170
VQAHEVHQKILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVS
Sbjct: 127548 VQAHEVHQKILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVS 127369
Query: 171 QNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNF 209
QNVIPSSA+KRETYTFENSVNMLPSSTEVSVKTKKR +F
Sbjct: 127368 QNVIPSSAQKRETYTFENSVNMLPSSTEVSVKTKKR*HF 127252
Score = 162 bits (410), Expect = 2e-37
Identities = 81/97 (83%), Positives = 81/97 (83%)
Frame = -3
Query: 539 PVYSNSSVRNELPMHHXXXXXXXXXXXXXXXXIRKKTIPLKRQKTATKGNQRVQKFLNAE 598
PVYSNSSVRNELPMHH IRKKTIPLKRQKTATKGNQRVQKFLNAE
Sbjct: 117148 PVYSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAE 116969
Query: 599 GSGGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSR 635
GSGGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSR
Sbjct: 116968 GSGGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSR 116858
Score = 140 bits (354), Expect = 5e-31
Identities = 71/76 (93%), Positives = 74/76 (96%)
Frame = -3
Query: 206 RLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
RLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL
Sbjct: 126415 RLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 126236
Query: 266 FLETVKRKSESSPIVR 281
FLETVKRKSES +++
Sbjct: 126235 FLETVKRKSESR*VIK 126188
Score = 116 bits (291), Expect = 1e-23
Identities = 54/57 (94%), Positives = 57/57 (99%)
Frame = -3
Query: 835 IILMDLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILV 891
++L+DLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILV
Sbjct: 98179 VLLLDLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILV 98009
Score = 102 bits (254), Expect = 2e-19
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = -1
Query: 635 RSTRSSKNEDNIMTAQNVPLKPQTSGYTCNIPTESNLDSGEHKTSVLEE 683
RSTRSSKNEDNIMTAQNVPLKPQTSGYTCNIPTESNLDSGEHKTSVLEE
Sbjct: 114981 RSTRSSKNEDNIMTAQNVPLKPQTSGYTCNIPTESNLDSGEHKTSVLEE 114835
Score = 94.4 bits (233), Expect = 5e-17
Identities = 46/52 (88%), Positives = 48/52 (91%)
Frame = -1
Query: 763 SGGFVISGVLSPDTISSKRKAKENIGKVNKKSNKKRICLDNDERKTNLMVNL 814
SGGFVISGVLSPDTISSKRKAKENIGKVNKKSNKKRICLDNDER NL + +
Sbjct: 101046 SGGFVISGVLSPDTISSKRKAKENIGKVNKKSNKKRICLDNDERSMNLFLKV 100891
Score = 81.6 bits (200), Expect = 3e-13
Identities = 37/40 (92%), Positives = 38/40 (94%)
Frame = -3
Query: 725 HHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSG 764
H +VLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSG
Sbjct: 102046 HLFIVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSG 101927
Score = 70.1 bits (170), Expect = 1e-09
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = -3
Query: 891 VFYVNFGDLLCTLHETPYILSTGDSFYVPSG 921
VFYVNFGDLLCTLHETPYILSTGDSFYVPSG
Sbjct: 83023 VFYVNFGDLLCTLHETPYILSTGDSFYVPSG 82931
Score = 68.2 bits (165), Expect = 4e-09
Identities = 32/36 (88%), Positives = 34/36 (93%)
Frame = -3
Query: 807 KTNLMVNLGIPLGDPLQPTRVKDPETREIILMDLVR 842
+TNLMVNLGIPLGDPLQPTRVKDPETREIILM +R
Sbjct: 100321 ETNLMVNLGIPLGDPLQPTRVKDPETREIILMGKIR 100214
Score = 66.2 bits (160), Expect = 1e-08
Identities = 31/34 (91%), Positives = 32/34 (93%)
Frame = -1
Query: 508 LVPEEVTSTVTKSRRISRRPSDWWVVKSEESPVY 541
LVPEEVTSTVTKSRRISRRPSDWWVVKSEES +
Sbjct: 120537 LVPEEVTSTVTKSRRISRRPSDWWVVKSEESKYF 120436
Score = 59.7 bits (143), Expect = 1e-06
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -1
Query: 684 SGPSRLNNNYLMSGKNDVDDEEVHGSS 710
SGPSRLNNNYLMSGKNDVDDEEVHGSS
Sbjct: 113331 SGPSRLNNNYLMSGKNDVDDEEVHGSS 113251
Score = 52.4 bits (124), Expect = 2e-04
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 15/68 (22%)
Frame = -1
Query: 891 VFYVNFGDLL--CTLHE-----TPYILSTGDSFY--------VPSGNYYNIKNLRNEESV 935
+ Y G+L C L+ T Y++ DS+ + GNYYNIKNLRNEESV
Sbjct: 80856 ISYFRLGELFLSCVLYYNCQVMTTYLIKKNDSYVNNFYFLITLLLGNYYNIKNLRNEESV 80677
Query: 936 LLFTQIKR 943
LLFTQIKR
Sbjct: 80676 LLFTQIKR 80653
Score = 41.2 bits (95), Expect = 0.51
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -3
Query: 711 DDSKQSKVIPKNRIHHKL 728
DDSKQSKVIPKNRIHHKL
Sbjct: 103258 DDSKQSKVIPKNRIHHKL 103205
Score = 38.5 bits (88), Expect = 3.3
Identities = 20/38 (52%), Positives = 21/38 (54%)
Frame = -2
Query: 77 ECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAH 114
+CQ EASLQFVVEPSEATNRS H
Sbjct: 138962 QCQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSGWCH 138849
>dbj|AK011004.1|AK011004 Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched
library, clone:2510027E19:centromere autoantigen C, full
insert sequence
Length = 1546
Score = 333 bits (853), Expect = 7e-89
Identities = 212/479 (44%), Positives = 275/479 (57%)
Frame = +1
Query: 1 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP 60
MA+ LDHLKN Y RR+CR SRA +I+T++GQN+LEILQDCFE++S A+ F + T+S+
Sbjct: 208 MASFHLDHLKN-YHRRYCRSSRAPNIHTKKGQNMLEILQDCFEDQSKAS-FLDDFTESLT 381
Query: 61 NSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVHQKI 120
+ST+K K QS SK+C EASLQ EPSEA SVQA+EVH
Sbjct: 382 SSTQKKKANYSQSSSKKCPESHSKPVPVSSRTGEASLQASAEPSEAAGGSVQANEVHHG- 558
Query: 121 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKK 180
A +E L VGSP VLLDA + Q +K
Sbjct: 559 ---------------------------ASDELDLCVGSPVVLLDANVNTLQKAASPGGQK 657
Query: 181 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS 240
R + V+ S+ +S KT+KRL F+DKV L E +N V ED S+GQE S
Sbjct: 658 RVASVSRSPVDRQASNKNISFKTRKRLYFEDKVTLSTAETENSVLQVEDNLSKGQEGTSS 837
Query: 241 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE 300
+Q R D ++Q ++KK+FS LFLETVKRKS+SS +VRH A P PP D KL+E
Sbjct: 838 EITQKR-DDLSSDVQSRSKKNFSELFLETVKRKSKSSSVVRHTAAVPFSPPPPSDMKLLE 1014
Query: 301 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLAN 360
DEFIID SD+SF+SR W+ IP K L SP E+TAL QG+KSREK H++ T A
Sbjct: 1015DEFIIDRSDRSFSSRLWVMIPSKDRHLSAHKPSP-ENTALLQGKKSREKSHSLSAMTFAR 1191
Query: 361 DKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK 420
+ S K HP+E +Q S + + + DE N+ RS + +M S+ A+ P +RT KQ
Sbjct: 1192NTQSDKAHPIEEAQLSVEE--NPATTCTDELENDCRSPENKMQSETAKTPRAWERTTKQS 1365
Query: 421 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMP 479
QRR K AEE L GQS EN + S+ QD+ Q NS RNM++ EE+ N+ KKQ P
Sbjct: 1366QRRVSKPKAAEE-LRKGQSSWENSNVSNTGQDKLQINSKRNMKDCEEVRNEPNPKKQKP 1539
>dbj|AB004649.1|AB004649 Gallus gallus mRNA for CENP-C, complete cds
Length = 2952
Score = 200 bits (509), Expect = 5e-49
Identities = 110/244 (45%), Positives = 152/244 (62%), Gaps = 5/244 (2%)
Frame = +1
Query: 704 EEVHGSSDDSKQSKVIPKNRI-----HHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDY 758
EE + SSD+S+ KN + K+VLPSNTPNVRRTKR RLKPLEYWRGER+ Y
Sbjct: 1876 EENNESSDNSEDLHCQIKNLLSDEIGRQKIVLPSNTPNVRRTKRIRLKPLEYWRGERVTY 2055
Query: 759 QGRPSGGFVISGVLSPDTISSKRKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPL 818
+PSG +ISG+ + + K+ + KKR + ++ ++ L IPL
Sbjct: 2056 TLKPSGRLLISGIAGAEAEPHMKN------KLKSRHKKKRA-----KTRSEVVKCLDIPL 2202
Query: 819 GDPLQPTRVKDPETREIILMDLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQE 878
D +PT + DP T + +L++ + ++ F + +KVYK+L+T F+ GKLIL P +
Sbjct: 2203 ADASKPTSIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLK 2382
Query: 879 EKGKQHVGQDILVFYVNFGDLLCTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLF 938
EKG Q V D + FYV G ++ TLH+T Y L++GD FYVP+GN YNI+NL NEESVL F
Sbjct: 2383 EKGHQFVHMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHF 2562
Query: 939 TQIK 942
TQ+K
Sbjct: 2563 TQLK 2574
Score = 52.8 bits (125), Expect = 2e-04
Identities = 71/303 (23%), Positives = 115/303 (37%), Gaps = 26/303 (8%)
Frame = +1
Query: 3 ASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVPNS 62
A LDHLK YR RFC + IN + GQNVL+ +QDCFE D + NS + +S
Sbjct: 34 AERLDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDD--TDVTINSPNATSSS 204
Query: 63 TRKIKD---TCIQSP-----------SKECQXXXXXXXXXXXXXXEASLQFVVEPSEATN 108
T +++ T QSP ++ C V P N
Sbjct: 205 TPLVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGRN 384
Query: 109 RSV-----QAHEVHQKILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLL 163
+ VH+ T V + + S ++D + VGSP ++
Sbjct: 385 SRIADSIKTDSPVHRG--ETQVLTFKDVEGLCESPAKLSDPEDDPG-----VVGSPLLVE 543
Query: 164 DAKTSV---SQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVML----K 216
+AKT V + ++ PSS + + E + S E + L+F + +
Sbjct: 544 EAKTPVQTRTVSIAPSSPSPVKDHNVE-----IESDCEFLIDESGCLSFKSWFSIPRKNR 708
Query: 217 KIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSES 276
K + D + S +E+ +N +E +++ K + +KR SES
Sbjct: 709 KSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTK---NVRVQRDLKRTSES 879
Query: 277 SPI 279
P+
Sbjct: 880 HPV 888
>dbj|AB004650.1|AB004650 Chicken mRNA for CENP-C, clone CENP-C_1_2, complete cds
Length = 2760
Score = 200 bits (509), Expect = 5e-49
Identities = 110/244 (45%), Positives = 152/244 (62%), Gaps = 5/244 (2%)
Frame = +1
Query: 704 EEVHGSSDDSKQSKVIPKNRI-----HHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDY 758
EE + SSD+S+ KN + K+VLPSNTPNVRRTKR RLKPLEYWRGER+ Y
Sbjct: 1816 EENNESSDNSEDLHCQIKNLLSDEIGRQKIVLPSNTPNVRRTKRIRLKPLEYWRGERVTY 1995
Query: 759 QGRPSGGFVISGVLSPDTISSKRKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPL 818
+PSG +ISG+ + + K+ + KKR + ++ ++ L IPL
Sbjct: 1996 TLKPSGRLLISGIAGAEAEPHMKN------KLKSRHKKKRA-----KTRSEVVKCLDIPL 2142
Query: 819 GDPLQPTRVKDPETREIILMDLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQE 878
D +PT + DP T + +L++ + ++ F + +KVYK+L+T F+ GKLIL P +
Sbjct: 2143 ADASKPTSIVDPVTNQEVLLECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLK 2322
Query: 879 EKGKQHVGQDILVFYVNFGDLLCTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLF 938
EKG Q V D + FYV G ++ TLH+T Y L++GD FYVP+GN YNI+NL NEESVL F
Sbjct: 2323 EKGHQFVHMDTIAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGNGYNIRNLLNEESVLHF 2502
Query: 939 TQIK 942
TQ+K
Sbjct: 2503 TQLK 2514
Score = 52.8 bits (125), Expect = 2e-04
Identities = 71/303 (23%), Positives = 115/303 (37%), Gaps = 26/303 (8%)
Frame = +1
Query: 3 ASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVPNS 62
A LDHLK YR RFC + IN + GQNVL+ +QDCFE D + NS + +S
Sbjct: 7 AERLDHLKKYYRARFCGQG-GKKINIQPGQNVLKYIQDCFECDD--TDVTINSPNATSSS 177
Query: 63 TRKIKD---TCIQSP-----------SKECQXXXXXXXXXXXXXXEASLQFVVEPSEATN 108
T +++ T QSP ++ C V P N
Sbjct: 178 TPLVRNQERTSTQSPRPDAGLTIVVGNRTCHSTVSLPATPAETVRSKGEPCVFCPEPGRN 357
Query: 109 RSV-----QAHEVHQKILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLL 163
+ VH+ T V + + S ++D + VGSP ++
Sbjct: 358 SRIADSIKTDSPVHRG--ETQVLTFKDVEGLCESPAKLSDPEDDPG-----VVGSPLLVE 516
Query: 164 DAKTSV---SQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVML----K 216
+AKT V + ++ PSS + + E + S E + L+F + +
Sbjct: 517 EAKTPVQTRTVSIAPSSPSPVKDHNVE-----IESDCEFLIDESGCLSFKSWFSIPRKNR 681
Query: 217 KIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSES 276
K + D + S +E+ +N +E +++ K + +KR SES
Sbjct: 682 KSQKDGSAAPVLKSQSSDKEKTADKKGKNMNVQAEVHSEQKTK---NVRVQRDLKRTSES 852
Query: 277 SPI 279
P+
Sbjct: 853 HPV 861
>dbj|AB042324.1|AB042324 Gallus gallus CENP-C gene for centromere protein CENP-C, complete cds
Length = 27630
Score = 72.0 bits (175), Expect = 3e-10
Identities = 36/50 (72%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = +1
Query: 727 KLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSG-GFVISGVLSPD 775
KLVLPSNTPNVRRTKR RLKPLEYWRGER+ Y +PSG F + L PD
Sbjct: 14869 KLVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGTSFQNTHPLDPD 15018
Score = 43.9 bits (102), Expect = 0.079
Identities = 19/39 (48%), Positives = 27/39 (68%)
Frame = +1
Query: 889 ILVFYVNFGDLLCTLHETPYILSTGDSFYVPSGNYYNIK 927
I FYV G ++ TLH+T Y L++GD FYVP+G ++K
Sbjct: 19840 IKAFYVIRGQIITTLHKTSYYLTSGDYFYVPAGKCMSLK 19956
Score = 43.5 bits (101), Expect = 0.10
Identities = 21/53 (39%), Positives = 32/53 (59%)
Frame = +3
Query: 839 DLVRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILV 891
+ + ++ F + +KVYK+L+T F+ GKLIL P +EKG Q V D +V
Sbjct: 18780 ECINSGSSHSCFFEDESIKVYKSLNTSDFAAGKLILKPLKEKGHQFVHMDTIV 18938
Score = 37.0 bits (84), Expect = 9.6
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 921 GNYYNIKNLRNEESVLLFTQIK 942
GN YNI+NL NEESVL FTQ+K
Sbjct: 20290 GNGYNIRNLLNEESVLHFTQLK 20355
>emb|AL645565.3|AL645565 Human DNA sequence from clone RP11-397M22 on chromosome 9, complete
sequence [Homo sapiens]
Length = 146309
Score = 48.5 bits (114), Expect(2) = 2e-06
Identities = 24/67 (35%), Positives = 37/67 (54%), Gaps = 2/67 (2%)
Frame = -3
Query: 735 PNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSKRKA--KENIGKVNK 792
P+ +TKR K L+YW GER +Y RP+ GF+ S +L P + +R+ K +
Sbjct: 53979 PSALQTKRMLRKHLKYWIGERAEYSSRPTRGFMASEILQPARLLIQREC*MKRRKSMTQQ 53800
Query: 793 KSNKKRI 799
K +KR+
Sbjct: 53799 KEKRKRV 53779
Score = 30.4 bits (67), Expect(2) = 2e-06
Identities = 24/83 (28%), Positives = 37/83 (43%), Gaps = 8/83 (9%)
Frame = -1
Query: 806 RKTNLMVN--------LGIPLGDPLQPTRVKDPETREIILMDLVRPQDTYQFFVKHGELK 857
RK N+++N + G+ PT V + I +R + + ++
Sbjct: 53795 RKGNVLINR*EF*KGITDLN*GNLCGPTNVH*CRISQTISRAFLRFKGIHA*CMQDDSYG 53616
Query: 858 VYKTLDTPFFSTGKLILGPQEEK 880
VYK L TP STG LI+GP + K
Sbjct: 53615 VYKILRTPLHSTGTLIIGPFKMK 53547
>emb|AL355931.1|NCB3E4 Neurospora crassa DNA linkage group II BAC clone B3E4
Length = 62421
Score = 47.4 bits (111), Expect(2) = 8e-04
Identities = 58/255 (22%), Positives = 100/255 (38%), Gaps = 48/255 (18%)
Frame = +1
Query: 719 IPKNR--IHHKLVLPSNTPNVRRTKRTR--LKPLEYWRGERIDYQ--------------- 759
+PK+R + ++ +P ++ + RT+ R KPL YWR E +DY+
Sbjct: 8182 LPKSRGLVINRREVPGDSNAIIRTRSGRHSFKPLAYWRNEHVDYEYEEDEFVADHAPKAS 8361
Query: 760 -GRPSGGFVISGVLSPDTISSKRKAKENI-------GKVNKKSNK--------KRICLDN 803
G +G TI + +E + G+ K+ +R D
Sbjct: 8362 KGSSAGEVARKRKFVLPTIKEVVRVEEEVVDFPRSRGRGTKRGGNNAAAGGTSRRAQRDE 8541
Query: 804 DERKTNLM-VNLGIPLGD------------PLQPTRVKDPETREIILMDLVRPQDTYQFF 850
D +N GI GD P V+ E + I +R Q
Sbjct: 8542 DPSPPEPWELNPGILGGDVVTWYPQHEFHPPALDDEVEVQEKQLAISGRAIRTQK----- 8706
Query: 851 VKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLLCTLHETPYIL 910
VK + KT++ FF G + L P K ++ + + F+V G +L T++ET + +
Sbjct: 8707 VKDAAFRYAKTVNEGFFGAGVVDLPPGAVKRPKNSRKMFMTFFVYTGRVLVTVNETVFRI 8886
Query: 911 STGDSFYVPSGNYYN 925
G ++VP G +++
Sbjct: 8887 GKGGMWFVPRGMFFS 8931
Score = 22.3 bits (46), Expect(2) = 8e-04
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 920 SGNYYNIKNLRNEESVLLFTQ 940
+GNYY+I+N ++ + + F+Q
Sbjct: 9026 TGNYYSIENDYDQPARVFFSQ 9088
>emb|Z28089.1|SCYKL089W S.cerevisiae chromosome XI reading frame ORF YKL089w
Length = 2073
Score = 50.4 bits (119), Expect = 8e-04
Identities = 81/373 (21%), Positives = 146/373 (38%), Gaps = 51/373 (13%)
Frame = +2
Query: 620 SDEADLAKKKNLD--CSRSTRSSKN---EDNIMTAQNVPLKPQTSGYTCNIPTESNLDSG 674
SD DL ++ D + S +S N ED + +P + Y I ++S+LDSG
Sbjct: 713 SDVPDLVADEDDDDRVNTSLNTSDNALLEDELEDDGFIPESEEDGDY---IESDSSLDSG 883
Query: 675 EHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHG-SSDDSKQSKVIPKNRIHHKLVLPSN 733
S + + ND +D+ + +SD + +I +N
Sbjct: 884 SDSASDSDGDNTYQEVEEEAEVNTNDNEDDYIRRQASDVVRTDSIIDRN----------- 1030
Query: 734 TPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSKRKAKENIGKVNKK 793
+R++ R ++ PL+YWR E+I Y+ + + VL D I + ++++ + +
Sbjct: 1031 --GLRKSTRVKVAPLQYWRNEKIVYKRKSN-----KPVLDIDKIVTYDESEDEEEILAAQ 1189
Query: 794 SNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDLVRPQDTYQF---- 849
KK+ R N V G P G P + K+ E D++ ++
Sbjct: 1190 RRKKQKKKPTPTRPYN-YVPTGRPRGRPKKDPNAKENLIPEDPNEDIIERIESGGIENGE 1366
Query: 850 FVKHGELKV-YKTLDT------------PFFSTGKLILGPQEE---------KGKQHVGQ 887
++KHG L+ K DT P S + + ++E K K++
Sbjct: 1367 WLKHGILEANVKISDTKEETKDEIIAFAPNLSQTEQVKDTKDENFALEIMFDKHKEYFAS 1546
Query: 888 DIL-------------------VFYVNFGDLLCTLHETPYILSTGDSFYVPSGNYYNIKN 928
IL F+V G + T+ + ++ G +F +P+ N Y I N
Sbjct: 1547 GILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAIAN 1726
Query: 929 LRNEESVLLFTQI 941
N+E+ + F Q+
Sbjct: 1727 RGNDEAKMFFVQV 1765
>emb|Z18294.1|SCMIF2A Saccharomyces cerevisiae of MIF2 gene
Length = 2161
Score = 50.4 bits (119), Expect = 8e-04
Identities = 81/373 (21%), Positives = 146/373 (38%), Gaps = 51/373 (13%)
Frame = +2
Query: 620 SDEADLAKKKNLD--CSRSTRSSKN---EDNIMTAQNVPLKPQTSGYTCNIPTESNLDSG 674
SD DL ++ D + S +S N ED + +P + Y I ++S+LDSG
Sbjct: 803 SDVPDLVADEDDDDRVNTSLNTSDNALLEDELEDDGFIPESEEDGDY---IESDSSLDSG 973
Query: 675 EHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHG-SSDDSKQSKVIPKNRIHHKLVLPSN 733
S + + ND +D+ + +SD + +I +N
Sbjct: 974 SDSASDSDGDNTYQEVEEEAEVNTNDNEDDYIRRQASDVVRTDSIIDRN----------- 1120
Query: 734 TPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSKRKAKENIGKVNKK 793
+R++ R ++ PL+YWR E+I Y+ + + VL D I + ++++ + +
Sbjct: 1121 --GLRKSTRVKVAPLQYWRNEKIVYKRKSN-----KPVLDIDKIVTYDESEDEEEILAAQ 1279
Query: 794 SNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDLVRPQDTYQF---- 849
KK+ R N V G P G P + K+ E D++ ++
Sbjct: 1280 RRKKQKKKPTPTRPYN-YVPTGRPRGRPKKDPNAKENLIPEDPNEDIIERIESGGIENGE 1456
Query: 850 FVKHGELKV-YKTLDT------------PFFSTGKLILGPQEE---------KGKQHVGQ 887
++KHG L+ K DT P S + + ++E K K++
Sbjct: 1457 WLKHGILEANVKISDTKEETKDEIIAFAPNLSQTEQVKDTKDENFALEIMFDKHKEYFAS 1636
Query: 888 DIL-------------------VFYVNFGDLLCTLHETPYILSTGDSFYVPSGNYYNIKN 928
IL F+V G + T+ + ++ G +F +P+ N Y I N
Sbjct: 1637 GILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAIAN 1816
Query: 929 LRNEESVLLFTQI 941
N+E+ + F Q+
Sbjct: 1817 RGNDEAKMFFVQV 1855
>emb|AL109834.1|SPBC1861 S.pombe chromosome II cosmid c1861
Length = 23851
Score = 46.6 bits (109), Expect = 0.012
Identities = 78/359 (21%), Positives = 141/359 (38%), Gaps = 17/359 (4%)
Frame = -1
Query: 582 KTATKGNQRVQKFLNAEGSGGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSK 641
K + + Q+ +K ++G+ DE S S+ PL LA + R+
Sbjct: 1075 KPSKQNKQKEEKKTISQGNKPN-SRDEDSELSIDVPLSMLNRSLANNSQKNKKRTPNKPL 899
Query: 642 NEDNIMTAQNVPLKPQTSGYTCNIPTESNLDSGE-----HKTSVLEESGPSRLNNNYLMS 696
E +I + + P P ++ L+ G T V P+ N + +
Sbjct: 898 QESSINSVKEGESNPVVKRKRGR-PRKNKLEIGNSVQTSEATQVKGAKKPAIRNAKKMSN 722
Query: 697 GKNDVDDEEVHGSSDDSKQS--KVIPKNRIHH-KLVLPSNT-PNVRRTKRTRLKPLEYWR 752
K D+ ++ SD + K I +N + K V +T VRR+KRTR+ PL +W+
Sbjct: 721 EK----DDSLNSQSDSASGEFIKTIARNNLQEIKQVEREDTLVGVRRSKRTRIAPLAFWK 554
Query: 753 GERIDYQGRPSGGFVISGVLSPDTISSKRKAKENIGKVNKKSNKKRICLD---NDERKTN 809
ER+ Y+ I + I +I + KK + KR ++ N E K+N
Sbjct: 553 NERVVYELHRDEN-RIPALPEVKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKSNLEAKSN 377
Query: 810 LMVNLGIPLGDPLQ----PTRVKDPETREIILMDLVRPQDTYQFFVKHGELKVYKTL-DT 864
+ D + ++P+ E ++ P Q + + +LK +
Sbjct: 376 DVEEYDAFYKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQ-QISNQQLKFASLFKEE 200
Query: 865 PFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLLCTLHETPYILSTGDSFYVPSGNY 923
P F+ G + + EK + +I+ F + G + T++ T + + F VP G +
Sbjct: 199 PSFAAGVVEMPAGAEKPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIVPRGKF 23
>gb|L30105.1|MUSCENP Mus musculus (clone xs72) Cenpc pseudogene fragment
Length = 250
Score = 44.7 bits (104), Expect = 0.046
Identities = 25/60 (41%), Positives = 32/60 (52%)
Frame = +3
Query: 317 WITIPRKAGSLKQRTISPAESTALFQGRKSREKHHNILPKTLANDKHSHKPHPVETSQPS 376
W+ I RK L SP E+TAL QGRKSREK H++ T + HP+ +Q S
Sbjct: 12 WVMIARKDRHLSPHKPSP-ENTALLQGRKSREKSHSLSATTFVRNTQCD*AHPIGEAQLS 188
>gb|AC005334.1|AC005334 Drosophila melanogaster DNA sequence (P1s DS08221 (D130) and DS00738
(D271)), complete sequence
Length = 111448
Score = 43.5 bits (101), Expect = 0.10
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%)
Frame = -3
Query: 58 SVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVH 117
SVP ST + + S +SL + +S E H
Sbjct: 42809 SVPGSTNVGAPSSLSLDSTTASVETSASISSSTSNGNSSLTSAAIHVQKPQQSTFVEEEH 42630
Query: 118 QKILATDVSSKNTPDSKKISS-----RNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQN 172
K T S ++ SKKISS + +++ SE+D++ S + S K S +
Sbjct: 42629 TKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKIKKSDKNASSSDKRKNSSTSQ 42450
Query: 173 VIPSSAKKRETYTFE--NSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDK 230
S+ + E + E ++ + + + K+R +K + K++E + K + +
Sbjct: 42449 SSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQE 42270
Query: 231 TSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSE 275
E ++RK + R R+ + + R+ K+ E +R E
Sbjct: 42269 EREKEDRKAKEEEKEREREKKAQEDREKKEREERELREKEQRDKE 42135
>gb|AF221715.1|AF221715 Drosophila melanogaster split ends long isoform mRNA, complete cds
Length = 17802
Score = 43.5 bits (101), Expect = 0.10
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%)
Frame = +1
Query: 58 SVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVH 117
SVP ST + + S +SL + +S E H
Sbjct: 6268 SVPGSTNVGAPSSLSLDSTTASVETSASISSSTSNGNSSLTSAAIHVQKPQQSTFVEEEH 6447
Query: 118 QKILATDVSSKNTPDSKKISS-----RNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQN 172
K T S ++ SKKISS + +++ SE+D++ S + S K S +
Sbjct: 6448 TKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKIKKSDKNASSSDKRKNSSTSQ 6627
Query: 173 VIPSSAKKRETYTFE--NSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDK 230
S+ + E + E ++ + + + K+R +K + K++E + K + +
Sbjct: 6628 SSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQE 6807
Query: 231 TSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSE 275
E ++RK + R R+ + + R+ K+ E +R E
Sbjct: 6808 EREKEDRKAKEEEKEREREKKAQEDREKKEREERELREKEQRDKE 6942
>gb|AF184612.1|AF184612 Drosophila melanogaster split ends mRNA, complete cds
Length = 18430
Score = 43.5 bits (101), Expect = 0.10
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%)
Frame = +2
Query: 58 SVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVH 117
SVP ST + + S +SL + +S E H
Sbjct: 5693 SVPGSTNVGAPSSLSLDSTTASVETSASISSSTSNGNSSLTSAAIHVQKPQQSTFVEEEH 5872
Query: 118 QKILATDVSSKNTPDSKKISS-----RNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQN 172
K T S ++ SKKISS + +++ SE+D++ S + S K S +
Sbjct: 5873 TKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKIKKSDKNASSSDKRKNSSTSQ 6052
Query: 173 VIPSSAKKRETYTFE--NSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDK 230
S+ + E + E ++ + + + K+R +K + K++E + K + +
Sbjct: 6053 SSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQE 6232
Query: 231 TSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSE 275
E ++RK + R R+ + + R+ K+ E +R E
Sbjct: 6233 EREKEDRKAKEEEKEREREKKAQEDREKKEREERELREKEQRDKE 6367
>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone
BACR22C14, complete sequence
Length = 163461
Score = 43.5 bits (101), Expect = 0.10
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%)
Frame = +2
Query: 58 SVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVH 117
SVP ST + + S +SL + +S E H
Sbjct: 13529 SVPGSTNVGAPSSLSLDSTTASVETSASISSSTSNGNSSLTSAAIHVQKPQQSTFVEEEH 13708
Query: 118 QKILATDVSSKNTPDSKKISS-----RNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQN 172
K T S ++ SKKISS + +++ SE+D++ S + S K S +
Sbjct: 13709 TKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKIKKSDKNASSSDKRKNSSTSQ 13888
Query: 173 VIPSSAKKRETYTFE--NSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDK 230
S+ + E + E ++ + + + K+R +K + K++E + K + +
Sbjct: 13889 SSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQE 14068
Query: 231 TSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSE 275
E ++RK + R R+ + + R+ K+ E +R E
Sbjct: 14069 EREKEDRKAKEEEKEREREKKAQEDREKKEREERELREKEQRDKE 14203
>gb|AE003590.2|AE003590 Drosophila melanogaster genomic scaffold 142000013386046 section 1 of 16,
complete sequence
Length = 301639
Score = 43.5 bits (101), Expect = 0.10
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%)
Frame = +2
Query: 58 SVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVH 117
SVP ST + + S +SL + +S E H
Sbjct: 184439 SVPGSTNVGAPSSLSLDSTTASVETSASISSSTSNGNSSLTSAAIHVQKPQQSTFVEEEH 184618
Query: 118 QKILATDVSSKNTPDSKKISS-----RNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQN 172
K T S ++ SKKISS + +++ SE+D++ S + S K S +
Sbjct: 184619 TKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKIKKSDKNASSSDKRKNSSTSQ 184798
Query: 173 VIPSSAKKRETYTFE--NSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDK 230
S+ + E + E ++ + + + K+R +K + K++E + K + +
Sbjct: 184799 SSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQE 184978
Query: 231 TSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSE 275
E ++RK + R R+ + + R+ K+ E +R E
Sbjct: 184979 EREKEDRKAKEEEKEREREKKAQEDREKKEREERELREKEQRDKE 185113
>ref|NM_079979.1| Drosophila melanogaster split ends (spen), mRNA
Length = 19444
Score = 43.5 bits (101), Expect = 0.10
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%)
Frame = +1
Query: 58 SVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVH 117
SVP ST + + S +SL + +S E H
Sbjct: 6328 SVPGSTNVGAPSSLSLDSTTASVETSASISSSTSNGNSSLTSAAIHVQKPQQSTFVEEEH 6507
Query: 118 QKILATDVSSKNTPDSKKISS-----RNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQN 172
K T S ++ SKKISS + +++ SE+D++ S + S K S +
Sbjct: 6508 TKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKIKKSDKNASSSDKRKNSSTSQ 6687
Query: 173 VIPSSAKKRETYTFE--NSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDK 230
S+ + E + E ++ + + + K+R +K + K++E + K + +
Sbjct: 6688 SSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQE 6867
Query: 231 TSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSE 275
E ++RK + R R+ + + R+ K+ E +R E
Sbjct: 6868 EREKEDRKAKEEEKEREREKKAQEDREKKEREERELREKEQRDKE 7002
>gb|AF188205.1|AF188205 Drosophila melanogaster Spen RNP motif protein long isoform (spen)
mRNA, complete cds
Length = 19444
Score = 43.5 bits (101), Expect = 0.10
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%)
Frame = +1
Query: 58 SVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNRSVQAHEVH 117
SVP ST + + S +SL + +S E H
Sbjct: 6328 SVPGSTNVGAPSSLSLDSTTASVETSASISSSTSNGNSSLTSAAIHVQKPQQSTFVEEEH 6507
Query: 118 QKILATDVSSKNTPDSKKISS-----RNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQN 172
K T S ++ SKKISS + +++ SE+D++ S + S K S +
Sbjct: 6508 TKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKIKKSDKNASSSDKRKNSSTSQ 6687
Query: 173 VIPSSAKKRETYTFE--NSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDK 230
S+ + E + E ++ + + + K+R +K + K++E + K + +
Sbjct: 6688 SSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQE 6867
Query: 231 TSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSE 275
E ++RK + R R+ + + R+ K+ E +R E
Sbjct: 6868 EREKEDRKAKEEEKEREREKKAQEDREKKEREERELREKEQRDKE 7002
>gb|AF134186.1|AF134186 Caenorhabditis elegans XNP-1 (xnp-1) mRNA, complete cds
Length = 4326
Score = 42.7 bits (99), Expect = 0.18
Identities = 81/377 (21%), Positives = 145/377 (37%), Gaps = 27/377 (7%)
Frame = +1
Query: 124 DVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKKRET 183
D + +P SR SE+DE S +K V Q S KKR T
Sbjct: 226 DDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKS---KSKKKVDQKKKEKSKKKRTT 396
Query: 184 YTFENSVN---MLPSSTEVSVKTKKRLNFDD--------KVMLKKIEIDNKVSDEEDKTS 232
+ E+ + S + S KTKK+ + + KV K + V + +
Sbjct: 397 SSSEDEDSDEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSE 576
Query: 233 EGQE-RKPSGSSQNRIR-------DSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAA 284
E E KPS S+ ++ +SE E +++ KKS K +S +V+ +
Sbjct: 577 ESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKS-----------KKKSKKVVKKES 723
Query: 285 TAPPHSCPPDDTKLIEDEFIIDESDQSFAS-RSWITIPRKAGSLKQRTISPAESTALFQG 343
+ + P+ K + + S++S S +S K S K + P L
Sbjct: 724 ESEDEA--PEKKKTEKRKRSKTSSEESSESEKSDEEEEEKESSPKPKKKKPLAVKKLSSD 897
Query: 344 RKSREKHHNILPK-------TLANDKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYR 396
+S E +LP+ TL +D K E S+ SD ++E V+ +
Sbjct: 898 EESEESDVEVLPQKKKRGAVTLISDSEDEKDQKSE-SEASD----------VEEKVSKKK 1044
Query: 397 STKYEMYSKNAEKPSRSKRTIKQKQRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQR 456
+ K E S++ S T+ +K ++K + ++ + + SK + I + ++
Sbjct: 1045AKKQES-SESGSDSSEGSITVNRKSKKKEKPEKKKKGIIMDSSK---LQKETIDAERAEK 1212
Query: 457 NSDRNMEEHEEMGNDCV 473
+ +E+ ++ N V
Sbjct: 1213ERRKRLEKKQKEFNGIV 1263
>gb|U41510.1| Caenorhabditis elegans cosmid ZC449, complete sequence
Length = 35383
Score = 42.7 bits (99), Expect = 0.18
Identities = 66/320 (20%), Positives = 114/320 (35%), Gaps = 6/320 (1%)
Frame = -2
Query: 154 LSVGSPSVLLDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKK--RLNFDD 211
+S+ S + D S + S KK+ T T + P +TE TKK + +
Sbjct: 31482 ISIFSTTPATDDDDSEEETTTVKSHKKKSTKTTD-----APKTTEEPASTKKSEKKKTES 31318
Query: 212 KVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVK 271
K +K E +T +E K + + S E+ + S +TVK
Sbjct: 31317 KKAVKTTTTAAPAESAETETPSSEENKTTEEESGNV--SAEEVTTTSSTEVSVEEEQTVK 31144
Query: 272 RKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGSLKQRT 331
S+ + + + +T +E +E+ T P K + T
Sbjct: 31143 STEASTEEEKSTEASEEATTTSSETSETTEESEEEETT---------TKPAKTHKSSKTT 30991
Query: 332 ISPAESTALFQGRKSREKHHNILPKTL---ANDKHSHKPHPVETSQPSDKTVLDTSYALI 388
+ E++ +KS +K T + ++ S P E Q S+ T
Sbjct: 30990 TTTTEASTKKDSKKSHKKTKEEKVTTTPEPSTEESSESPETSEEPQSSEST--------- 30838
Query: 389 DETVNNYRSTKYEMYSKNAEKPSR-SKRTIKQKQRRKFMAKPAEEQLDVGQSKDENIHTS 447
T E ++ EKP + K+ K K+ +K + +EE D +SK + S
Sbjct: 30837 --------PTSEESTEQSTEKPKKEDKKDKKDKKDKKQKKEDSEEDDDDKKSKSSSSSDS 30682
Query: 448 HITQDEFQRNSDRNMEEHEE 467
T ++ SD + E E
Sbjct: 30681 K-TDEKSTSESDSSSEASSE 30625
>ref|NM_059022.1| helicase
Length = 4080
Score = 42.7 bits (99), Expect = 0.18
Identities = 81/377 (21%), Positives = 145/377 (37%), Gaps = 27/377 (7%)
Frame = +1
Query: 124 DVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKKRET 183
D + +P SR SE+DE S +K V Q S KKR T
Sbjct: 202 DDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKS---KSKKKVDQKKKEKSKKKRTT 372
Query: 184 YTFENSVN---MLPSSTEVSVKTKKRLNFDD--------KVMLKKIEIDNKVSDEEDKTS 232
+ E+ + S + S KTKK+ + + KV K + V + +
Sbjct: 373 SSSEDEDSDEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSE 552
Query: 233 EGQE-RKPSGSSQNRIR-------DSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAA 284
E E KPS S+ ++ +SE E +++ KKS K +S +V+ +
Sbjct: 553 ESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKS-----------KKKSKKVVKKES 699
Query: 285 TAPPHSCPPDDTKLIEDEFIIDESDQSFAS-RSWITIPRKAGSLKQRTISPAESTALFQG 343
+ + P+ K + + S++S S +S K S K + P L
Sbjct: 700 ESEDEA--PEKKKTEKRKRSKTSSEESSESEKSDEEEEEKESSPKPKKKKPLAVKKLSSD 873
Query: 344 RKSREKHHNILPK-------TLANDKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYR 396
+S E +LP+ TL +D K E S+ SD ++E V+ +
Sbjct: 874 EESEESDVEVLPQKKKRGAVTLISDSEDEKDQKSE-SEASD----------VEEKVSKKK 1020
Query: 397 STKYEMYSKNAEKPSRSKRTIKQKQRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQR 456
+ K E S++ S T+ +K ++K + ++ + + SK + I + ++
Sbjct: 1021AKKQES-SESGSDSSEGSITVNRKSKKKEKPEKKKKGIIMDSSK---LQKETIDAERAEK 1188
Query: 457 NSDRNMEEHEEMGNDCV 473
+ +E+ ++ N V
Sbjct: 1189ERRKRLEKKQKEFNGIV 1239
>dbj|AK020042.1|AK020042 Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
enriched library, clone:5930434L05:centromere
autoantigen C, full insert sequence
Length = 312
Score = 42.4 bits (98), Expect = 0.23
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = +1
Query: 919 PSGNYYNIKNLRNEESVLLFTQIKR 943
PSGN+YNIK L N ES LLFTQIKR
Sbjct: 4 PSGNHYNIKTLLNVESSLLFTQIKR 78
>gb|BC005403.1|BC005403 Homo sapiens, Similar to hypothetical protein FLJ10726, clone
IMAGE:3464389, mRNA
Length = 2243
Score = 41.2 bits (95), Expect = 0.51
Identities = 59/275 (21%), Positives = 105/275 (37%), Gaps = 12/275 (4%)
Frame = +2
Query: 214 MLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQA-----KKSFS-TLFL 267
M K E++ ++ D G +RK SS +R+R ++ + Q K S TL
Sbjct: 8 MWKIRELEKQMED----AYRGTKRKMLPSSSSRMRSDGFDEESQRYYWRPKNEISGTLED 175
Query: 268 ETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGSL 327
+ +K KS + + A P +L +EF D SDQ + T P+ S
Sbjct: 176 DFLKAKSWNKKFYDYEANMPDRWGHSGYKELYPEEFETDSSDQQDITNGKKTSPQVKSST 355
Query: 328 KQRTISPAESTALFQGRKSREKHHNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSYAL 387
+ + +KS++ H K SHK + +D T D+S
Sbjct: 356 HESR----------KHKKSKKSHKK------KQKKRSHKKQKKSKKEATDITA-DSSSEF 484
Query: 388 IDETVNNYRSTKYEMYSKNAEKPSRSKRTIKQKQRRKFMAKPA---EEQLDVGQSKDENI 444
+ET + + + K+K R+K + KPA E + + S D
Sbjct: 485 SEET------------GASGTRKGKQPHKRKKKSRKKSLKKPALFLEAESNTSHSDDSAS 628
Query: 445 HTSHITQDEFQRNSDRNMEE---HEEMGNDCVSKK 476
+S +++ + + R E H + N+ + ++
Sbjct: 629 SSSEESEERDTKKTKRKKREKKAHTSVANNEIQER 733
>dbj|AP000537.1|AP000537 Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
clone:c54B2
Length = 43734
Score = 41.2 bits (95), Expect = 0.51
Identities = 56/288 (19%), Positives = 106/288 (36%), Gaps = 9/288 (3%)
Frame = +1
Query: 101 VEPSEATNRSVQAHEVHQKILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPS 160
++P + S + E + +L + VS K++ S + ++ D HSE F
Sbjct: 11110 LQPCSGSYVSDKHSEPNSSVLESYVSDKHSEPSSSLLEYHVRDKHSETSSSF-------- 11265
Query: 161 VLLDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEI 220
++ VS S+ E++ + + P S+ ++ + + + +L +
Sbjct: 11266 ----PESYVSDKHSEGSSSCLESFVRDKP*D--PRSSVLASYVRDKHSEPSSSVLDSFVM 11427
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIV 280
D K SD E R+ S + DS Y + ++ S S ++ +ESS V
Sbjct: 11428 D-KYSDRRSSVLESYLREKH*ESNRSVPDS-YVRNKHSEHSSSAQESFVREKHTESSSCV 11601
Query: 281 RHAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGSLKQRTISP------ 334
HS PP + + + ++ D + + + K +
Sbjct: 11602 LETYVREKHSVPP---RSVRESYVRDRQSEPSSRVLEFYMRDKHSECNSSVLESYVLDKY 11772
Query: 335 -AESTALFQG--RKSREKHHNILPKTLANDKHSHKPHPVETSQPSDKT 379
+ST + R +H +ILP+ DKHS + S D T
Sbjct: 11773 SEDSTIFLESYVRYKHSEHSSILPEYYVGDKHSEPISRILESYVRDNT 11916
>gb|AF033371.1|AF033371 Hepatitis C virus isolate R6 from non-responder patient to
interferon alpha therapy, polyprotein mRNA, partial cds,
complete NS5A peptide
Length = 1341
Score = 41.2 bits (95), Expect = 0.51
Identities = 57/281 (20%), Positives = 112/281 (39%), Gaps = 6/281 (2%)
Frame = +1
Query: 116 VHQKILATDVSSKNTPDSKKISSRNINDHHSEADE-EFYLSVGSPSVLLDAKTSVSQNVI 174
++Q ++ + + + PD ++S + H A+ + L+ GSP L A +S SQ
Sbjct: 535 LNQYLVGSQLPCEPEPDVTVLTSMLTDPSHITAETAKRRLARGSPPSL--ASSSASQLSA 708
Query: 175 PSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVS--DEEDKTS 232
PS T +++ E ++ ++ + + + ++E +NKV D D
Sbjct: 709 PSLKATCTTRHDSPDADLI----EANLLWRQEMGGN----ITRVESENKVVVLDSFDPLG 864
Query: 233 EGQERKPSGSSQNRIRDSEY---EIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPH 289
++ + + +R S+ + A+ ++ LE+ KR + P+V H PP
Sbjct: 865 AEEDEREVSVAAEILRKSKRFPPALPIWARPDYNPPLLESWKRPDYAPPVV-HGCPLPPT 1041
Query: 290 SCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREK 349
PP + ++ ES T+ L +T +ES+A+ G S
Sbjct: 1042KAPPIPPPRRKRTVVLTES----------TVSSALAELATKTFGSSESSAVDSGTASAPP 1191
Query: 350 HHNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSYALIDE 390
+D S+ P +P D + D S++ + E
Sbjct: 1192DQPSDDGGTGSDVESYSSMPPLEGEPGDPDLSDGSWSTVSE 1314
>gb|U41849.1|SCU41849 Saccharomyces cerevisiae chromosome XVI, left arm, cosmid 8204
Length = 35868
Score = 40.8 bits (94), Expect = 0.67
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Frame = +3
Query: 120 ILATDVSSKNTPDSKK---ISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVS------ 170
+L+ ++SS +TP IND D+E +S+ + +VL D +
Sbjct: 666 LLSPELSSGDTPTHNVPLGTKDNEINDDEYCNDKE--ISLNANNVLPDELSKEEDERLKL 839
Query: 171 QNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEED- 229
+ + + KK++ E + N+ SSTE S + D ++ + E D KV EED
Sbjct: 840 ETHVSTEEKKQDIADQETAENLFTSSTEPSENKIRNSGDDTSMLFQDDESDQKVPWEEDV 1019
Query: 230 -------KTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRH 282
T+ QE P+ RD YE KKS S + E+S + H
Sbjct: 1020KKDFHNENTNNTQESAPNTDD----RDKGYEGNEALKKSESCTAADERSYSEETSEDIFH 1187
>gb|U23819.1|SCU23819 Saccharomyces cerevisiae multidomain vesicle coat protein (SEC16)
gene, complete cds
Length = 7169
Score = 40.8 bits (94), Expect = 0.67
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Frame = +1
Query: 120 ILATDVSSKNTPDSKK---ISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVS------ 170
+L+ ++SS +TP IND D+E +S+ + +VL D +
Sbjct: 883 LLSPELSSGDTPTHNVPLGTKDNEINDDEYCNDKE--ISLNANNVLPDELSKEEDERLKL 1056
Query: 171 QNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEED- 229
+ + + KK++ E + N+ SSTE S + D ++ + E D KV EED
Sbjct: 1057 ETHVSTEEKKQDIADQETAENLFTSSTEPSENKIRNSGDDTSMLFQDDESDQKVPWEEDV 1236
Query: 230 -------KTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRH 282
T+ QE P+ RD YE KKS S + E+S + H
Sbjct: 1237 KKDFHNENTNNTQESAPNTDD----RDKGYEGNEALKKSESCTAADERSYSEETSEDIFH 1404
>gb|AF151723.1|AF151723 Homo sapiens centromere protein C (CENPC1) gene, promoter region and
partial cds
Length = 3647
Score = 40.4 bits (93), Expect = 0.87
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 7 DHLKNGYRRRFCRPSR 22
DHLKNGYRRRFCRPSR
Sbjct: 1931 DHLKNGYRRRFCRPSR 1978
>ref|NM_076456.1| Caenorhabditis elegans
Length = 1482
Score = 40.4 bits (93), Expect = 0.87
Identities = 64/310 (20%), Positives = 109/310 (34%), Gaps = 6/310 (1%)
Frame = +1
Query: 164 DAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKK--RLNFDDKVMLKKIEID 221
D S + S KK+ T T + P +TE TKK + + K +K
Sbjct: 241 DDDDSEEETTTVKSHKKKSTKTTD-----APKTTEEPASTKKSEKKKTESKKAVKTTTTA 405
Query: 222 NKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVR 281
E +T +E K + + S E+ + S +TVK S+ +
Sbjct: 406 APAESAETETPSSEENKTTEEESGNV--SAEEVTTTSSTEVSVEEEQTVKSTEASTEEEK 579
Query: 282 HAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALF 341
+ + +T +E +E+ T P K + T + E++
Sbjct: 580 STEASEEATTTSSETSETTEESEEEETT---------TKPAKTHKSSKTTTTTTEASTKK 732
Query: 342 QGRKSREKHHNILPKTL---ANDKHSHKPHPVETSQPSDKTVLDTSYALIDETVNNYRST 398
+KS +K T + ++ S P E Q S+ T T
Sbjct: 733 DSKKSHKKTKEEKVTTTPEPSTEESSESPETSEEPQSSEST-----------------PT 861
Query: 399 KYEMYSKNAEKPSR-SKRTIKQKQRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRN 457
E ++ EKP + K+ K K+ +K + +EE D +SK + S T ++
Sbjct: 862 SEESTEQSTEKPKKEDKKDKKDKKDKKQKKEDSEEDDDDKKSKSSSSSDSK-TDEKSTSE 1038
Query: 458 SDRNMEEHEE 467
SD + E E
Sbjct: 1039SDSSSEASSE 1068
>gb|AC010109.5| Drosophila melanogaster 3L BAC RPCI98-9B4 (Roswell Park Cancer
Institute Drosophila BAC Library) complete sequence
Length = 167663
Score = 40.0 bits (92), Expect = 1.1
Identities = 53/236 (22%), Positives = 93/236 (38%), Gaps = 14/236 (5%)
Frame = -1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 22919 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 22788
Query: 104 SEATNRSVQAHEVHQKILATDVSSKN--------TPDSKKISSRNI-NDHHSEADEEF-- 152
E+ N++ +KI+ T+ +++ DSK+ ++N ND EF
Sbjct: 22787 KESENKNFPNDS--RKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPN 22614
Query: 153 -YLSVGSPSVLLDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNF 209
+ L D+K S + S +KR+ + E+ + P+ + S + K +
Sbjct: 22613 ESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGI 22434
Query: 210 DDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
D+ IEI N+ S E KT +S N++ + + I SF +
Sbjct: 22433 DNPTKNDGIEIINRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 22269
>gb|AY052127.1| Drosophila melanogaster SD07741 full length cDNA
Length = 3682
Score = 39.3 bits (90), Expect = 1.9
Identities = 74/339 (21%), Positives = 130/339 (37%), Gaps = 39/339 (11%)
Frame = +2
Query: 172 NVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDN-----KVSD 226
+V + KKR+ E+S + + S K KK K K+ ++ + SD
Sbjct: 857 HVSKTDKKKRKKRARESSASPERKKKKKSKKHKKESKSKKKKSRKRKHSESGRDSDRDSD 1036
Query: 227 EEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATA 286
EED +SE + R+ + +D + ++ KKS + +R + S + +
Sbjct: 1037 EEDDSSEEERRESKNVRKKAKKDKKKRDKKLKKKSRARASSSDSERTNSPSRKENKSDRS 1216
Query: 287 PPHSCPPDDTKLIEDEFII-DESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRK 345
+ D K + E ++ S + +RS + P +A S+ R P E +A RK
Sbjct: 1217 RGANASKSDEKAPQQENVMRSRSRERKDTRS--SRPLEA-SIDSRQRKPRERSAATPPRK 1387
Query: 346 SREKH-HNILPKTLANDKH--------------SHKPHPVETSQPSDKTVLDTSYALIDE 390
E+H + + +KH + E + ++ I+
Sbjct: 1388 EPERHRERSKDRQRSKEKHRSRDRLRSRERQRSRERQRSRERQRSKERQRSKERQRSIER 1567
Query: 391 TVNNYRSTKYEMY---SKNA----EKP-------SRSKRTIKQK--QRRKFMAKPAEEQL 434
+ R E SK+A EKP SR +R K K QR K +P +E+
Sbjct: 1568 QRSKERQRSKERQRSRSKDALRCKEKPQSNEKERSRERRRSKSKDRQRSKEKHRPKDEKQ 1747
Query: 435 DVGQSKDENIHTSHITQ--DEFQRNSDRNMEEHEEMGND 471
+ + +D + S Q +E QR+ +R + E D
Sbjct: 1748 TLDKRRDRSTDRSKENQRSNERQRSKERQRSKERERSKD 1864
>ref|NM_058787.1| Caenorhabditis elegans
Length = 591
Score = 38.9 bits (89), Expect = 2.5
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Frame = +1
Query: 696 SGKN-DVDDEEVH----GSSDDSKQSKVIPKNRIHHKLVLPSNTPNVRRTKRTRLKPLEY 750
SG++ +V D++V S+ SK+SK+ P N KLV S + R KR R+ PL Y
Sbjct: 262 SGRDVEVQDDDVFVPSMASTPISKKSKLHP-NLAKSKLVDHSCS----RPKRNRIPPLRY 426
Query: 751 WRGER--IDYQGRPSGGFV-ISGVLSPDTISSKRKAKENIGKVNKKSNKKR 798
W GER Y FV IS SP ++ + K + K ++KR
Sbjct: 427 WIGERPLYRYDQNFCREFVGISEAFSPKSLENAEKEERKARTKRSKKSRKR 579
>gb|AF054253.1|AF054253 Hepatitis C virus HC-J4, pCV-J4L3 polyprotein gene, partial cds
Length = 8780
Score = 38.5 bits (88), Expect = 3.3
Identities = 64/282 (22%), Positives = 114/282 (39%), Gaps = 7/282 (2%)
Frame = +1
Query: 116 VHQKILATDVSSKNTPDSKKISSRNINDHHSEADE-EFYLSVGSPSVLLDAKTSVSQNVI 174
++Q ++ + + + PD ++S + H A+ + L+ GSP L A +S SQ
Sbjct: 6637 LNQYLVGSQLPCEPEPDVTVLTSMLTDPSHITAETAKRRLARGSPPSL--ASSSASQLSA 6810
Query: 175 PSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKV---SDEEDKT 231
PS K T +S + P + + + N + ++E +NKV E
Sbjct: 6811 PSL--KATCTTHHDSPDADPIEANLLWRQEMGGN------ITRVESENKVVILDSFEPFH 6966
Query: 232 SEGQERKPSGSSQ--NRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPH 289
++G ER+ S +++ + R + A+ ++ LE+ K P+V H PP
Sbjct: 6967 ADGDEREISVAAEILRKSRKFPSALPIWARPDYNPPLLESWKDPDYVPPVV-HGCPLPPT 7143
Query: 290 SCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTAL-FQGRKSRE 348
PP + I+ ES+ S A T + GS + +TAL Q +
Sbjct: 7144 KAPPIPPPRRKRTVILTESNVSSALAELAT--KTFGSSGSSAVDSGTATALPDQASDDGD 7317
Query: 349 KHHNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSYALIDE 390
K +D S+ P +P D + D S++ + E
Sbjct: 7318 K---------GSDVESYSSMPPLEGEPGDPDLSDGSWSTVSE 7416
>gb|BC015052.1|BC015052 Homo sapiens, clone MGC:9613 IMAGE:3909737, mRNA, complete cds
Length = 4412
Score = 38.1 bits (87), Expect = 4.3
Identities = 43/186 (23%), Positives = 80/186 (42%), Gaps = 1/186 (0%)
Frame = +2
Query: 132 DSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKKRETYTFENSVN 191
DS SS + +D SE DEEF+ G ++ D + + +++E +
Sbjct: 449 DSNSSSSSSDSDSSSE-DEEFHDGYGE-DLMGDEEDRARLEQMTEKEREQELFNRIEKRE 622
Query: 192 MLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSE 251
+L E+ K K + K KK E +E++K Q ++ +S N+ R S+
Sbjct: 623 VLKRRFEIKKKLKTAKKKEKKEKKKKQE------EEQEKKKLTQIQESQVTSHNKERRSK 784
Query: 252 YEIQRQAK-KSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQ 310
+ + K ++ L E KRK+ ++ ++ DD + ED+ ++SD+
Sbjct: 785 RDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDR 964
Query: 311 SFASRS 316
S + S
Sbjct: 965 SSRTSS 982
>gb|AF129857.2|AF129857 Zea mays CENPCA protein (CenpcA) mRNA, complete cds
Length = 2238
Score = 38.1 bits (87), Expect = 4.3
Identities = 15/24 (62%), Positives = 19/24 (78%)
Frame = +1
Query: 735 PNVRRTKRTRLKPLEYWRGERIDY 758
P VR++ RTR +PLEYW GER+ Y
Sbjct: 1894 PGVRKSSRTRSRPLEYWLGERLLY 1965
>dbj|D87440.1|D87440 Human mRNA for KIAA0252 gene, partial cds
Length = 4288
Score = 38.1 bits (87), Expect = 4.3
Identities = 43/186 (23%), Positives = 80/186 (42%), Gaps = 1/186 (0%)
Frame = +1
Query: 132 DSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKKRETYTFENSVN 191
DS SS + +D SE DEEF+ G ++ D + + +++E +
Sbjct: 337 DSNSSSSSSDSDSSSE-DEEFHDGYGE-DLMGDEEDRARLEQMTEKEREQELFNRIEKRE 510
Query: 192 MLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSE 251
+L E+ K K + K KK E +E++K Q ++ +S N+ R S+
Sbjct: 511 VLKRRFEIKKKLKTAKKKEKKEKKKKQE------EEQEKKKLTQIQESQVTSHNKERRSK 672
Query: 252 YEIQRQAK-KSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQ 310
+ + K ++ L E KRK+ ++ ++ DD + ED+ ++SD+
Sbjct: 673 RDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDR 852
Query: 311 SFASRS 316
S + S
Sbjct: 853 SSRTSS 870
>ref|XM_031646.3| Homo sapiens similar to Plasmodium falciparum glutamic acid-rich
protein precursor (A54514) (LOC146067), mRNA
Length = 4437
Score = 38.1 bits (87), Expect = 4.3
Identities = 43/186 (23%), Positives = 80/186 (42%), Gaps = 1/186 (0%)
Frame = +1
Query: 132 DSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAKKRETYTFENSVN 191
DS SS + +D SE DEEF+ G ++ D + + +++E +
Sbjct: 487 DSNSSSSSSDSDSSSE-DEEFHDGYGE-DLMGDEEDRARLEQMTEKEREQELFNRIEKRE 660
Query: 192 MLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSE 251
+L E+ K K + K KK E +E++K Q ++ +S N+ R S+
Sbjct: 661 VLKRRFEIKKKLKTAKKKEKKEKKKKQE------EEQEKKKLTQIQESQVTSHNKERRSK 822
Query: 252 YEIQRQAK-KSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQ 310
+ + K ++ L E KRK+ ++ ++ DD + ED+ ++SD+
Sbjct: 823 RDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDR 1002
Query: 311 SFASRS 316
S + S
Sbjct: 1003SSRTSS 1020
>gb|AF129859.1|AF129859 Zea mays CENPCC protein (CenpcC) mRNA, partial cds
Length = 1432
Score = 38.1 bits (87), Expect = 4.3
Identities = 15/24 (62%), Positives = 19/24 (78%)
Frame = +2
Query: 735 PNVRRTKRTRLKPLEYWRGERIDY 758
P VR++ RTR +PLEYW GER+ Y
Sbjct: 1184 PGVRKSSRTRSRPLEYWLGERLLY 1255
>gb|AF207756.1|AF207756 Hepatitis C virus strain MD15 complete genome
Length = 9377
Score = 38.1 bits (87), Expect = 4.3
Identities = 59/281 (20%), Positives = 115/281 (39%), Gaps = 6/281 (2%)
Frame = +3
Query: 116 VHQKILATDVSSKNTPDSKKISSRNINDHHSEADE-EFYLSVGSPSVLLDAKTSVSQNVI 174
++Q ++ + + + PD ++S + H A+ + L+ GSP L A +S SQ
Sbjct: 6780 LNQYLVGSQLPCEPEPDVAVLTSMLTDPSHITAETAKRRLARGSPPSL--ASSSASQLSA 6953
Query: 175 PSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVS--DEEDKT- 231
PS T+ +++ E ++ ++ + + + ++E +NKV D D
Sbjct: 6954 PSLKATCTTHHDSPDADLI----EANLLWRQEMGGN----ITRVESENKVVILDSFDPLH 7109
Query: 232 SEGQERKPSGSSQ--NRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPH 289
+E ER+ S +++ + R + A+ ++ LE+ K P+V H PP
Sbjct: 7110 AEEDEREVSVAAEILRKSRKFPTALPIWARPDYNPPLLESWKDPEYVPPVV-HGCPLPPT 7286
Query: 290 SCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALFQGRKSREK 349
PP + ++ ES S A + T +T +ES+A+ G +
Sbjct: 7287 KAPPIPPPRRKRTVVLTESTVSSALAEFAT----------KTFGSSESSAVDSGTATAPP 7436
Query: 350 HHNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSYALIDE 390
+D S+ P +P D + D S++ + E
Sbjct: 7437 DQASDDGDKGSDVESYSSMPPLEGEPGDPDLSDGSWSTVSE 7559
>gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete sequence
Length = 194322
Score = 38.1 bits (87), Expect = 4.3
Identities = 41/142 (28%), Positives = 62/142 (42%), Gaps = 23/142 (16%)
Frame = -1
Query: 696 SGKN-DVDDEEVH----GSSDDSKQSKVIPK---------------NRIHHKLVLPSNTP 735
SG++ +V D++V S+ SK+SK+ P N +K LP +
Sbjct: 186735 SGRDVEVQDDDVFVPSMASTPISKKSKLHPNLAKSKLVDRKFLFNVNHFSNKNYLPDSCS 186556
Query: 736 NVRRTKRTRLKPLEYWRGER--IDYQGRPSGGFV-ISGVLSPDTISSKRKAKENIGKVNK 792
R KR R+ PL YW GER Y FV IS SP ++ + K +
Sbjct: 186555 ---RPKRNRIPPLRYWIGERPLYRYDQNFCREFVGISEAFSPKSLENAEKEERKARTKRS 186385
Query: 793 KSNKKRICLDNDERKTNLMVNL 814
K ++KR +R NL+++L
Sbjct: 186384 KKSRKR------KRT*NLLIHL 186337
>emb|X88927.1|XLNOPP180 X.laevis mRNA for xNopp180
Length = 3432
Score = 37.7 bits (86), Expect = 5.7
Identities = 57/259 (22%), Positives = 92/259 (35%), Gaps = 11/259 (4%)
Frame = +1
Query: 45 KSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPS 104
K+ N +T ++K P K + + S A+ +P+
Sbjct: 1531 KTPTNSKATPTSKKTPAKPGTPKTSAAKKDSSSSDSSDSSSDEKKTPAKRAAKTTPAKPA 1710
Query: 105 EATNRSVQAHEVHQ-KILATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLL 163
T + A + K A K P K+ SS + +D SE +++ S P+V
Sbjct: 1711 AKTTPAKPAAKTTPAKPAAKSTPGKQVPTKKESSSSDSSDSSSEDEKK---SSAKPAVKT 1881
Query: 164 DAKTSVSQNVI---PSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVML----K 216
+ S+ V+ P AKK + + +S S E + KT K L + K
Sbjct: 1882 TPGKATSKPVVASKPVPAKKASSSSDSDS------SEEETTKTTKPLTKLSPAVKTLPPK 2043
Query: 217 KIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFS---TLFLETVKRK 273
K E + S + D + + KP S + + +K S S + E K K
Sbjct: 2044 KAESSSDSSSDSDSEKKTKPAKPPAKSATPVNTKAPAQNKASKASCSDSDSSSEEEGKSK 2223
Query: 274 SESSPIVRHAATAPPHSCP 292
+ ATAPP P
Sbjct: 2224 QPTGKSPAAKATAPPKKNP 2280
>emb|AL031323.1|SPCC962 S.pombe chromosome III cosmid c962
Length = 16137
Score = 37.7 bits (86), Expect = 5.7
Identities = 85/391 (21%), Positives = 143/391 (35%), Gaps = 21/391 (5%)
Frame = -1
Query: 106 ATNRSVQAHEVHQKILATDVSSKNTPDS-----KKISSRNINDHHSEADEEFYLSVGSPS 160
AT V + KIL T+ S ++T DS KK +S ND + E + +
Sbjct: 3462 ATGGRVSSSSFRDKILQTNFSPRSTIDSFSNISKKRNSEEANDENDETNLK--------- 3310
Query: 161 VLLDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEI 220
IP KKR+ S N+L SSTE S + K + D + +
Sbjct: 3309 -------------IPIPEKKRKFQEVLQSKNILVSSTEDSHEPVK-VTEDSQTAIHV--- 3181
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIV 280
+K D E+K+ E ++ S + +SE K + L +KRK V
Sbjct: 3180 -SKFEDLENKSMESEQ------SLQLLSESE----NDDKPLIDLIPLLAIKRKDNLVSGV 3034
Query: 281 RHAATAPPHSCPPDDTKLIE---------DEFIIDESDQSFASRS-WITIPRKAGSLKQR 330
+ S DT +++ E + +E ++ S + + G K R
Sbjct: 3033 LEKGKSTSTSKTKFDTSIVDFIEKPKTEISEVLPEEKRKAICDESQTVRVSIDRGVTKTR 2854
Query: 331 TISPAESTALFQGRKSREKHHNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSYALIDE 390
+S S + E + T+ N S P P+ QP++ L D
Sbjct: 2853 DVSSPVSDEKSENVNHEEANSG---HTVMNVHSSLDPQPI--VQPNELESGSYLKDLPDR 2689
Query: 391 TVNNYRSTKYEMYSKNAEK-PSRSKRTIK---QKQRRKFMAKPAEEQLDVGQSKDENI-H 445
V N ++ N+ K S++ +T++ + K K A +L+ + +E +
Sbjct: 2688 NVGNSEKVTFQEDDINSPKLQSKNNQTVEAVNTETSDKLQEKEANHELENIEKIEEKLTE 2509
Query: 446 TSHIT-QDEFQRNSDRNMEEHEEMGNDCVSK 475
++ D F +N + G VSK
Sbjct: 2508 VDKVSLSDAFPDQEIKNSRTSVQNGTRSVSK 2416
>dbj|AB031034.1|AB031034 Schizosaccharomyces pombe cut17+ mRNA for Cut17, complete cds
Length = 4500
Score = 37.7 bits (86), Expect = 5.7
Identities = 85/391 (21%), Positives = 143/391 (35%), Gaps = 21/391 (5%)
Frame = +2
Query: 106 ATNRSVQAHEVHQKILATDVSSKNTPDS-----KKISSRNINDHHSEADEEFYLSVGSPS 160
AT V + KIL T+ S ++T DS KK +S ND + E + +
Sbjct: 2039 ATGGRVSSSSFRDKILQTNFSPRSTIDSFSNISKKRNSEEANDENDETNLK--------- 2191
Query: 161 VLLDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEI 220
IP KKR+ S N+L SSTE S + K + D + +
Sbjct: 2192 -------------IPIPEKKRKFQEVLQSKNILVSSTEDSHEPVK-VTEDSQTAIHV--- 2320
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIV 280
+K D E+K+ E ++ S + +SE K + L +KRK V
Sbjct: 2321 -SKFEDLENKSMESEQ------SLQLLSESE----NDDKPLIDLIPLLAIKRKDNLVSGV 2467
Query: 281 RHAATAPPHSCPPDDTKLIE---------DEFIIDESDQSFASRS-WITIPRKAGSLKQR 330
+ S DT +++ E + +E ++ S + + G K R
Sbjct: 2468 LEKGKSTSTSKTKFDTSIVDFIEKPKTEISEVLPEEKRKAICDESQTVRVSIDRGVTKTR 2647
Query: 331 TISPAESTALFQGRKSREKHHNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSYALIDE 390
+S S + E + T+ N S P P+ QP++ L D
Sbjct: 2648 DVSSPVSDEKSENVNHEEANSG---HTVMNVHSSLDPQPI--VQPNELESGSYLKDLPDR 2812
Query: 391 TVNNYRSTKYEMYSKNAEK-PSRSKRTIK---QKQRRKFMAKPAEEQLDVGQSKDENI-H 445
V N ++ N+ K S++ +T++ + K K A +L+ + +E +
Sbjct: 2813 NVGNSEKVTFQEDDINSPKLQSKNNQTVEAVNTETSDKLQEKEANHELENIEKIEEKLTE 2992
Query: 446 TSHIT-QDEFQRNSDRNMEEHEEMGNDCVSK 475
++ D F +N + G VSK
Sbjct: 2993 VDKVSLSDAFPDQEIKNSRTSVQNGTRSVSK 3085
>gb|AC010034.6| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 154232
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 17103 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 16972
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 16971 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 16870
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 16869 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 16693
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 16692 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 16561
>gb|AC022344.2|AC022344 Drosophila melanogaster, chromosome X, region 12F-13A, BAC clone
BACR30H22, complete sequence
Length = 157308
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 43860 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 43729
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 43728 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 43627
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 43626 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 43450
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 43449 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 43318
>gb|AC003053.1|AC003053 Drosophila melanogaster DNA sequence (P1 DS00216 (D160)), complete
sequence
Length = 80689
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 51289 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 51158
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 51157 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 51056
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 51055 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 50879
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 50878 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 50747
>gb|AC092400.1|AC092400 Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone
BACR39L06, complete sequence
Length = 178953
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 58006 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 57875
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 57874 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 57773
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 57772 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 57596
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 57595 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 57464
>gb|AC007587.11| Drosophila melanogaster, chromosome 2R, region 41C-41D, BAC clone
BACR02D22, complete sequence
Length = 185916
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 177854 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 177723
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 177722 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 177621
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 177620 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 177444
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 177443 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 177312
>gb|AC005713.8|AC005713 Drosophila melanogaster, chromosome 2R, region 54A1-54B2, BAC clone
BACR48A11, complete sequence
Length = 157507
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 98165 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 98296
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 98297 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 98398
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 98399 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 98575
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 98576 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 98707
>gb|AC004276.1|AC004276 Drosophila melanogaster DNA sequence (P1 DS01020 (D139)), complete
sequence
Length = 86567
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 43711 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 43842
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 43843 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 43944
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 43945 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 44121
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 44122 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 44253
>gb|AC005554.2|AC005554 Drosophila melanogaster, chromosome 2L, region 23C4-23D4, P1 clones
DS02380 and DS06823, complete sequence
Length = 93375
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 48763 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 48894
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 48895 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 48996
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 48997 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 49173
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 49174 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 49305
>gb|AC092231.1|AC092231 Drosophila melanogaster, chromosome 2L, region 24D-24E, BAC clone
BACR28B08, complete sequence
Length = 155566
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 77686 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 77817
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 77818 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 77919
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 77920 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 78096
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 78097 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 78228
>ref|NM_026649.1| Mus musculus RIKEN cDNA 4930441O14 gene (4930441O14Rik), mRNA
Length = 2628
Score = 37.4 bits (85), Expect = 7.4
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -3
Query: 390 ETVNNYRSTKY-EMYSKNAEKPSRSKRTIKQKQRRKFMAKPAEEQLDVGQSKDENIHTSH 448
+T N R+ KY M N P R + + + + + K +E VGQ E++HT +
Sbjct: 1960 KTKQNKRTFKYFHMNGSNVRSPERDWK-LNRADPK*YREKSYDECWIVGQ---ESVHTPY 1793
Query: 449 ITQDEFQRNSDRNMEEH 465
QD+F N +R+ EEH
Sbjct: 1792 *FQDQFSSNWERSQEEH 1742
>gb|AC007416.12|AC007416 Drosophila melanogaster, chromosome 2L, region 28B-28B, BAC clone
BACR08I01, complete sequence
Length = 169427
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 68889 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 69020
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 69021 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 69122
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 69123 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 69299
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 69300 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 69431
>dbj|AK019608.1|AK019608 Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4930441O14:hypothetical protein, full
insert sequence
Length = 2628
Score = 37.4 bits (85), Expect = 7.4
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -3
Query: 390 ETVNNYRSTKY-EMYSKNAEKPSRSKRTIKQKQRRKFMAKPAEEQLDVGQSKDENIHTSH 448
+T N R+ KY M N P R + + + + + K +E VGQ E++HT +
Sbjct: 1960 KTKQNKRTFKYFHMNGSNVRSPERDWK-LNRADPK*YREKSYDECWIVGQ---ESVHTPY 1793
Query: 449 ITQDEFQRNSDRNMEEH 465
QD+F N +R+ EEH
Sbjct: 1792 *FQDQFSSNWERSQEEH 1742
>gb|AC010036.5| Drosophila melanogaster 3L BAC RP98-7K20 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 190365
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 40661 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 40792
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 40793 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 40894
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 40895 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 41071
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 41072 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 41203
>gb|AC092396.1|AC092396 Drosophila melanogaster, chromosome 2L, region 36X-36X, BAC clone
BACR21C10, complete sequence
Length = 164439
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 20103 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 20234
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 20235 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 20336
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 20337 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 20513
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 20514 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 20645
>gb|AC093957.2| Drosophila melanogaster 3L BAC RP98-14E19 (Roswell Park Cancer
Institute Drosophila BAC Library) complete sequence
Length = 182207
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 52441 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 52572
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 52573 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 52674
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 52675 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 52851
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 52852 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 52983
>gb|AC008143.5|AC008143 Drosophila melanogaster, chromosome 3R, region 92D-92D, BAC clone
BACR33G16, complete sequence
Length = 134371
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 88443 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 88312
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 88311 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 88210
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 88209 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 88033
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 88032 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 87901
>emb|X02599.1|DMCOPIA Drosophila melanogaster transposable element copia
Length = 5183
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 2600 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 2731
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 2732 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 2833
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 2834 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 3010
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 3011 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 3142
>ref|NG_000277.1| Drosophila melanogaster G protein-coupled receptor kinase 2 (Gprk2) on
chromosome 3
Length = 62001
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 15834 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 15703
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 15702 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 15601
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 15600 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 15424
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 15423 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 15292
>gb|AC092186.1|AC092186 Drosophila melanogaster, chromosome 2L, region 22D-22E, BAC clone
BACR22P10, complete sequence
Length = 184650
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 55352 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 55221
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 55220 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 55119
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 55118 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 54942
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 54941 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 54810
>dbj|D10880.1|DROCOPIA Drosophila simulans copia gene, complete cds
Length = 5165
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 2589 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 2720
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 2721 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 2822
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 2823 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 2999
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 3000 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 3131
>emb|X54147.1|DMCOPIAV Drosophila copia DNA encoding virus-like particle (VLP) protein
Length = 5091
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 2526 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 2657
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 2658 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 2759
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 2760 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 2936
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 2937 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 3068
>gb|AC099022.1| Drosophila melanogaster, chromosome 2L, region 23C-23D, BAC clone
BACR48B06, complete sequence
Length = 184554
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 127399 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 127268
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 127267 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 127166
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 127165 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 126989
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 126988 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 126857
>gb|AC093103.1| Drosophila melanogaster, chromosome 2L, region 35X-36X, BAC clone
BACR39O07, complete sequence
Length = 153352
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 70736 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 70867
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 70868 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 70969
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 70970 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 71146
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 71147 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 71278
>gb|AC008334.7|AC008334 Drosophila melanogaster, chromosome X, region 12F-12F, BAC clone
BACR08K05, complete sequence
Length = 154335
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 148787 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 148656
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 148655 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 148554
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 148553 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 148377
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 148376 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 148245
>ref|XM_082643.1| bent, mRNA
Length = 6617
Score = 37.4 bits (85), Expect = 7.4
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 17/191 (8%)
Frame = +2
Query: 624 DLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSGYTCNIPTES-NLDSGEHKTSVL- 681
D + +KNLD T S+++ N + P+K TE L + K S++
Sbjct: 2318 DQSNQKNLDKKHKTDQSESKTNKNVSLAEPIKSNKQESEEQQATEQIGLKKVDRKASIVS 2497
Query: 682 ---EESGPSRLNNNYLMSGKNDVDDEE---------VHGSSDDSKQSKVI---PKNRIHH 726
E S R + + VDD++ V S+ +S++S +I P ++ +
Sbjct: 2498 VKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAVEESNTESRRSSIIDKKPLEQVDN 2677
Query: 727 KLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSKRKAKEN 786
K + + P + + RLKP E R ++ + +P G + + K +AK
Sbjct: 2678 KPIDANKNPQPLKEEIPRLKPAEKRRTSKVIEEPKPDEG--LPKLRKASIAQVKEEAKPA 2851
Query: 787 IGKVNKKSNKK 797
K+ K+ K
Sbjct: 2852 APKLKAKAKAK 2884
>ref|XM_017037.2| Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae) (SUPT6H),
mRNA
Length = 5577
Score = 37.4 bits (85), Expect = 7.4
Identities = 27/123 (21%), Positives = 48/123 (38%)
Frame = +2
Query: 195 SSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEI 254
S +V K +KR +FDD++ ++ + + K + R S + EY
Sbjct: 23 SEDDVGHKKRKRTSFDDRLEDDDFDLIEENLGVKVKRGQKYRRVKKMSDDEDDDEEEYGK 202
Query: 255 QRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFAS 314
+ K++ + + + E A APP DD + D+FI+D+ Q
Sbjct: 203 EEHEKEAIAEEIFQD--GEGEEGQEAMEAPMAPPEEEEEDDEESDIDDFIVDDDGQPLKK 376
Query: 315 RSW 317
W
Sbjct: 377 PKW 385
>gb|AC007146.14|AC007146 Drosophila melanogaster, chromosome 2L, region 33A-33A, BAC clone
BACR02J20, complete sequence
Length = 164907
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 97074 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 97205
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 97206 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 97307
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 97308 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 97484
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 97485 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 97616
>gb|AC005647.3|AC005647 Drosophila melanogaster, chromosome 2R, region 53C7-53C14, P1 clone
DS03836, complete sequence
Length = 59880
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 44015 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 43884
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 43883 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 43782
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 43781 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 43605
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 43604 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 43473
>gb|AF321299.1|AF321299 Caenorhabditis elegans CENP-C-like protein HCP-4 mRNA, complete cds
Length = 2728
Score = 37.4 bits (85), Expect = 7.4
Identities = 25/93 (26%), Positives = 45/93 (47%), Gaps = 9/93 (9%)
Frame = +3
Query: 726 HKLVLPSNTPN-VRRTKRTRLKPLEYWRGERIDYQGRPSGGF-----VISGVLSPDTISS 779
H+L+ P + P+ VRR+ R R+KP+ W GE+ Y P G V + V+ +
Sbjct: 2292 HQLMKPEDAPDGVRRSTRVRVKPVRSWLGEQPVYVNSPISGCKRLTGVTAVVIKDPRLCY 2471
Query: 780 KRKAKENIG---KVNKKSNKKRICLDNDERKTN 809
R A ++ K+NK+ + + +++ N
Sbjct: 2472 YRTADVRTATERELKDKANKRALAQEKKQQRQN 2570
>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
BACR06C11, complete sequence
Length = 174500
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 153922 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 153791
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 153790 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 153689
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 153688 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 153512
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 153511 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 153380
>gb|AC108481.1| Drosophila melanogaster 3L BAC RP98-1O19 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 160981
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 56438 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 56307
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 56306 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 56205
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 56204 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 56028
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 56027 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 55896
>gb|AC018484.4| Drosophila melanogaster, chromosome 2L, region 40A-40B, BAC clone
BACR13A13, complete sequence
Length = 172748
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 118627 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 118496
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 118495 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 118394
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 118393 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 118217
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 118216 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 118085
>emb|X02600.1|DMVLPHR Drosophila melanogaster virus like particle RNA (VLP H-RNA)
Length = 4960
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 2450 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 2581
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 2582 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 2683
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 2684 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 2860
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 2861 INRRS-ERLKTKPEISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 2992
>ref|NM_003170.1| Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae) (SUPT6H),
mRNA
Length = 6603
Score = 37.4 bits (85), Expect = 7.4
Identities = 27/123 (21%), Positives = 48/123 (38%)
Frame = +1
Query: 195 SSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEI 254
S +V K +KR +FDD++ ++ + + K + R S + EY
Sbjct: 1027 SEDDVGHKKRKRTSFDDRLEDDDFDLIEENLGVKVKRGQKYRRVKKMSDDEDDDEEEYGK 1206
Query: 255 QRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFAS 314
+ K++ + + + E A APP DD + D+FI+D+ Q
Sbjct: 1207 EEHEKEAIAEEIFQD--GEGEEGQEAMEAPMAPPEEEEEDDEESDIDDFIVDDDGQPLKK 1380
Query: 315 RSW 317
W
Sbjct: 1381 PKW 1389
>gb|AC008097.4|AC008097 Drosophila melanogaster, chromosome 2R, region 56F-56F, BAC clone
BACR20D06, complete sequence
Length = 185668
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 31986 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 31855
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 31854 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 31753
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 31752 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 31576
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 31575 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 31444
>gb|AE003411.1|DROSADH05 Drosophila melanogaster, chromosome 2L, region 34C4-36A7 (Adh region),
section 5 of 10 of the complete sequence
Length = 303043
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 65299 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 65168
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 65167 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 65066
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 65065 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 64889
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 64888 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 64757
>gb|U46691.1|HSU46691 Human putative chromatin structure regulator (SUPT6H) mRNA, complete
cds
Length = 6603
Score = 37.4 bits (85), Expect = 7.4
Identities = 27/123 (21%), Positives = 48/123 (38%)
Frame = +1
Query: 195 SSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEI 254
S +V K +KR +FDD++ ++ + + K + R S + EY
Sbjct: 1027 SEDDVGHKKRKRTSFDDRLEDDDFDLIEENLGVKVKRGQKYRRVKKMSDDEDDDEEEYGK 1206
Query: 255 QRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFAS 314
+ K++ + + + E A APP DD + D+FI+D+ Q
Sbjct: 1207 EEHEKEAIAEEIFQD--GEGEEGQEAMEAPMAPPEEEEEDDEESDIDDFIVDDDGQPLKK 1380
Query: 315 RSW 317
W
Sbjct: 1381 PKW 1389
>gb|M11240.1|DROTNCOP D.melanogaster copia element inserted at white-apricot allele
Length = 5146
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 2580 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 2711
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 2712 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 2813
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 2814 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 2990
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 2991 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 3122
>gb|AY075587.1| Drosophila melanogaster SD10530 full length cDNA
Length = 4908
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 2947 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 3078
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 3079 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 3180
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 3181 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 3357
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 3358 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 3489
>ref|NG_000514.1| Drosophila melanogaster toucan (toc) on chromosome 2
Length = 86710
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 73947 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 73816
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 73815 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 73714
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 73713 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 73537
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 73536 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 73405
>gb|AF295077.1|AF295077 Homo sapiens ZFN1 gene, complete sequence
Length = 4173
Score = 37.4 bits (85), Expect = 7.4
Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 26/213 (12%)
Frame = +1
Query: 168 SVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDE 227
S S NV + A KRET +S+N+ K + +L +L+ +D K+S E
Sbjct: 1129 STSGNVEKNKAVKRETEA--SSINLSVYEPFKVRKAEDKLKESSDKVLENRVLDGKLSSE 1302
Query: 228 EDKTSEGQERKPSGSSQNRIRDSEYEIQR-QAKKSFSTLFLETVKRKSESSPIVRHAATA 286
++ TS S +++ I AKK+ S E V ESSP+ + +
Sbjct: 1303 KNDTSLPSVAPSKTKSSSKLSSCIAAIAALSAKKAASDSCKEPVANSRESSPLPKEVNDS 1482
Query: 287 P------------------PHSCPPDDTKLIEDEFIIDESDQSFASRSWI-------TIP 321
P P PD+ + I E S S A + TI
Sbjct: 1483 PRAADKSPESQNLIDGTKKPSLKQPDNPRSISSENSSKGSPSSPAGSTPAIPKVRIKTIK 1662
Query: 322 RKAGSLKQRTISPAESTALFQGRKSREKHHNIL 354
+G +K+ L G+KS E+ +++
Sbjct: 1663 MSSGEIKRTVTRVLPEVDLDSGKKSSEQTASVM 1761
>gb|AC092246.1|AC092246 Drosophila melanogaster, chromosome 2L, region 36X-36X, BAC clone
BACR33C24, complete sequence
Length = 202495
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 37878 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 37747
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 37746 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 37645
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 37644 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 37468
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 37467 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 37336
>gb|AC009393.4|AC009393 Drosophila melanogaster, chromosome 3R, region 87D-87D, BAC clone
BACR17F05, complete sequence
Length = 221830
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 86638 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 86507
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 86506 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 86405
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 86404 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 86228
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 86227 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 86096
>gb|AC099027.1| Drosophila melanogaster, chromosome 2R, region 53C-53D, BAC clone
BACR06I15, complete sequence
Length = 185425
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 29585 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 29454
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 29453 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 29352
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 29351 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 29175
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 29174 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 29043
>gb|AC008346.5|AC008346 Drosophila melanogaster, chromosome 2R, region 56F-56F, BAC clone
BACR45K04, complete sequence
Length = 181141
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 63834 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 63965
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 63966 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 64067
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 64068 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 64244
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 64245 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 64376
>dbj|D79984.1|D79984 Human mRNA for KIAA0162 gene, complete cds
Length = 5876
Score = 37.4 bits (85), Expect = 7.4
Identities = 27/123 (21%), Positives = 48/123 (38%)
Frame = +1
Query: 195 SSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEI 254
S +V K +KR +FDD++ ++ + + K + R S + EY
Sbjct: 322 SEDDVGHKKRKRTSFDDRLEDDDFDLIEENLGVKVKRGQKYRRVKKMSDDEDDDEEEYGK 501
Query: 255 QRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFAS 314
+ K++ + + + E A APP DD + D+FI+D+ Q
Sbjct: 502 EEHEKEAIAEEIFQD--GEGEEGQEAMEAPMAPPEEEEEDDEESDIDDFIVDDDGQPLKK 675
Query: 315 RSW 317
W
Sbjct: 676 PKW 684
>gb|AC010688.5| Drosophila melanogaster 3L BAC RP98-11G5 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 201313
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 98748 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 98879
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 98880 KESKN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 98981
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 98982 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 99158
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 99159 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 99290
>ref|NM_058843.1| Caenorhabditis elegans
Length = 2601
Score = 37.4 bits (85), Expect = 7.4
Identities = 25/93 (26%), Positives = 45/93 (47%), Gaps = 9/93 (9%)
Frame = +1
Query: 726 HKLVLPSNTPN-VRRTKRTRLKPLEYWRGERIDYQGRPSGGF-----VISGVLSPDTISS 779
H+L+ P + P+ VRR+ R R+KP+ W GE+ Y P G V + V+ +
Sbjct: 2269 HQLMKPEDAPDGVRRSTRVRVKPVRSWLGEQPVYVNSPISGCKRLTGVTAVVIKDPRLCY 2448
Query: 780 KRKAKENIG---KVNKKSNKKRICLDNDERKTN 809
R A ++ K+NK+ + + +++ N
Sbjct: 2449 YRTADVRTATERELKDKANKRALAQEKKQQRQN 2547
>gb|AC013247.8| Drosophila melanogaster, chromosome 2R, region 41D-41E, BAC clone
BACR06P07, complete sequence
Length = 187793
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 78712 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 78581
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 78580 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 78479
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 78478 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 78302
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 78301 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 78170
>gb|AC008221.4|AC008221 Drosophila melanogaster, chromosome 3R, region 100B-100C, BAC clone
BACR30B13, complete sequence
Length = 184278
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 170466 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 170597
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 170598 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 170699
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 170700 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 170876
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 170877 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 171008
>ref|NG_000807.1| Drosophila melanogaster foraging (for) on chromosome 2
Length = 39669
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 9290 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 9159
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 9158 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 9057
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 9056 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 8880
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 8879 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 8748
>gb|AC023720.3| Drosophila melanogaster 3L BAC RP98-7F15 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 179196
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 126603 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 126734
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 126735 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 126836
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 126837 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 127013
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 127014 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 127145
>gb|AE003415.1|DROSADH09 Drosophila melanogaster, chromosome 2L, region 34C4-36A7 (Adh region),
section 9 of 10 of the complete sequence
Length = 299935
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 101280 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 101411
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 101412 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 101513
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 101514 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 101690
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 101691 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 101822
>gb|AC004445.1|AC004445 Drosophila melanogaster DNA sequence (P1 DS00445 (D93)), complete
sequence
Length = 61852
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 10446 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 10315
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 10314 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 10213
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 10212 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 10036
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 10035 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 9904
>gb|AC008138.4|AC008138 Drosophila melanogaster, chromosome 2L, region 33A-33A, BAC clone
BACR27A15, complete sequence
Length = 178208
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 139122 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 138991
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 138990 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 138889
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 138888 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 138712
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 138711 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 138580
>gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone
BACR02G16, complete sequence
Length = 177480
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 68833 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 68702
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 68701 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 68600
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 68599 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 68423
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 68422 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 68291
>gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E-12E, BAC clone
BACR02C24, complete sequence
Length = 234783
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 163862 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 163731
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 163730 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 163629
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 163628 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 163452
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 163451 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 163320
>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones
BACR01G10 and BACR05I08, complete sequence
Length = 294942
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 21907 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 21776
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 21775 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 21674
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 21673 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 21497
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 21496 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 21365
>gb|AE003633.2|AE003633 Drosophila melanogaster genomic scaffold 142000013386055 section 26
of 63, complete sequence
Length = 266103
Score = 37.4 bits (85), Expect = 7.4
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -1
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 8031 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDS 7900
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 7899 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 7798
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 7797 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 7621
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 7620 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 7489
>gb|AC004735.1|AC004735 Drosophila melanogaster, chromosome 2L, region 38A7-38C9, P1 clone
DS04178, complete sequence
Length = 74534
Score = 37.0 bits (84), Expect = 9.6
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 32730 ETVFLKDSKESENKNFPNDSRKIIQTEFLNESKECD----------------NIQFLKDS 32599
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 32598 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 32497
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 32496 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 32320
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 32319 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 32188
>gb|AC006215.1|AC006215 Drosophila melanogaster, chromosome 2L, region 38C1-38C2, P1 clones
DS01096 and DS00956, complete sequence
Length = 106735
Score = 37.0 bits (84), Expect = 9.6
Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 3/219 (1%)
Frame = -2
Query: 50 DFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNR 109
D + K+ PN +RKI T + SKEC ++QF+ + E+ N
Sbjct: 66183 DSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDSKESEN- 66055
Query: 110 SVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTS 168
KN P DS+KI + E D +L D+K S
Sbjct: 66054 ------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK--------DSKES 65953
Query: 169 VSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEIDNKVSD 226
+ S +KR+ + E+ + P+ + S + K + D+ IEI N+ S
Sbjct: 65952 NKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRS- 65776
Query: 227 EEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
E KT +S N++ + + I SF +
Sbjct: 65775 ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 65659
>gb|AC093197.1| Drosophila melanogaster, chromosome 2L, region 38A-38B, BAC clone
BACR25N15, complete sequence
Length = 191895
Score = 37.0 bits (84), Expect = 9.6
Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 3/219 (1%)
Frame = -2
Query: 50 DFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNR 109
D + K+ PN +RKI T + SKEC ++QF+ + E+ N
Sbjct: 153041 DSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDSKESEN- 152913
Query: 110 SVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTS 168
KN P DS+KI + E D +L D+K S
Sbjct: 152912 ------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK--------DSKES 152811
Query: 169 VSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEIDNKVSD 226
+ S +KR+ + E+ + P+ + S + K + D+ IEI N+ S
Sbjct: 152810 NKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRS- 152634
Query: 227 EEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
E KT +S N++ + + I SF +
Sbjct: 152633 ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 152517
Score = 37.0 bits (84), Expect = 9.6
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = -3
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 47737 ETVFLKDSKESENKNFPNDSRKIIQTEFLNESKECD----------------NIQFLKDS 47606
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 47605 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 47504
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 47503 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 47327
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 47326 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 47195
>gb|AF269819.1|AF269819 Staphylococcus epidermidis strain SR1 clone step.1024d11 genomic
sequence
Length = 3504
Score = 37.0 bits (84), Expect = 9.6
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 124 DVSSKNTPDSKKISSRNINDHHS--EADEEFYLSVGSPSVLLDAKTSVSQNVIPSSA-KK 180
DV + N P++++I+ IND S +A + F +GS V++ S N K
Sbjct: 562 DVVTPNIPEAEEITGIKINDEESIRKAGQIFINEIGSKGVVIKGGHSADLNNAKDFLFTK 383
Query: 181 RETYTFEN 188
ETYTFEN
Sbjct: 382 NETYTFEN 359
>gb|AF129858.1|AF129858 Zea mays CENPCB protein (CenpcB) mRNA, partial cds
Length = 1495
Score = 37.0 bits (84), Expect = 9.6
Identities = 31/148 (20%), Positives = 56/148 (36%), Gaps = 1/148 (0%)
Frame = +3
Query: 612 CSLSEPLES-DEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSGYTCNIPTESN 670
C+ P+E +A K+ R + S + + +P+ + ++ N
Sbjct: 861 CNALSPIEQKQQAAQEGKRKQQAKRVKKVSDESSHALEISQANFEPENEPHNVDV----N 1028
Query: 671 LDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIPKNRIHHKLVL 730
++ +S + G R N ++ ++ G D ++QS
Sbjct: 1029MEQPTVMSSAKGQKGAQRRNKT------KKLNQRKILGDVDLARQS-------------- 1148
Query: 731 PSNTPNVRRTKRTRLKPLEYWRGERIDY 758
VRR+ R R +PLEYW GER+ Y
Sbjct: 1149-----GVRRSSRIRSRPLEYWLGERLLY 1217
>ref|NM_009297.1| Mus musculus suppressor of Ty 6 homolog (S. cerevisiae) (Supt6h),
mRNA
Length = 5923
Score = 37.0 bits (84), Expect = 9.6
Identities = 27/123 (21%), Positives = 49/123 (38%)
Frame = +2
Query: 195 SSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEI 254
S +V K +KR +FDD++ ++ + + K + R S + + EY
Sbjct: 416 SEDDVGHKKRKRPSFDDRLEDDDFDLIEENLGVKVKRGQKYRRVKKMSDDDEDDEEEYGK 595
Query: 255 QRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFAS 314
+ K++ + + + E A APP DD + D+FI+D+ Q
Sbjct: 596 EEHEKEAIAGEIFQD--EEGEEGQEAVEAPMAPPDEEEEDDEESDIDDFIVDDDGQPLKK 769
Query: 315 RSW 317
W
Sbjct: 770 PKW 778
>gb|U40375.1|MMU40375 Mus musculus Supt6h mRNA, complete cds
Length = 5923
Score = 37.0 bits (84), Expect = 9.6
Identities = 27/123 (21%), Positives = 49/123 (38%)
Frame = +2
Query: 195 SSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEI 254
S +V K +KR +FDD++ ++ + + K + R S + + EY
Sbjct: 416 SEDDVGHKKRKRPSFDDRLEDDDFDLIEENLGVKVKRGQKYRRVKKMSDDDEDDEEEYGK 595
Query: 255 QRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDESDQSFAS 314
+ K++ + + + E A APP DD + D+FI+D+ Q
Sbjct: 596 EEHEKEAIAGEIFQD--EEGEEGQEAVEAPMAPPDEEEEDDEESDIDDFIVDDDGQPLKK 769
Query: 315 RSW 317
W
Sbjct: 770 PKW 778
>gb|AE003666.3|AE003666 Drosophila melanogaster genomic scaffold 142000013386055 section 59
of 63, complete sequence
Length = 309928
Score = 37.0 bits (84), Expect = 9.6
Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 3/219 (1%)
Frame = +3
Query: 50 DFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEPSEATNR 109
D + K+ PN +RKI T + SKEC ++QF+ + E+ N
Sbjct: 5745 DSKESENKNFPNDSRKIIQTEFPNESKECD----------------NIQFLKDSKESEN- 5873
Query: 110 SVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTS 168
KN P DS+KI + E D +L D+K S
Sbjct: 5874 ------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK--------DSKES 5975
Query: 169 VSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEIDNKVSD 226
+ S +KR+ + E+ + P+ + S + K + D+ IEI N+ S
Sbjct: 5976 NKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRS- 6152
Query: 227 EEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
E KT +S N++ + + I SF +
Sbjct: 6153 ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 6269
Score = 37.0 bits (84), Expect = 9.6
Identities = 51/225 (22%), Positives = 82/225 (35%), Gaps = 3/225 (1%)
Frame = +2
Query: 44 EKSLANDFSTNSTKSVPNSTRKIKDTCIQSPSKECQXXXXXXXXXXXXXXEASLQFVVEP 103
E D + K+ PN +RKI T + SKEC ++QF+ +
Sbjct: 111050 ETVFLKDSKESENKNFPNDSRKIIQTEFLNESKECD----------------NIQFLKDS 111181
Query: 104 SEATNRSVQAHEVHQKILATDVSSKNTP-DSKKISSRNINDHHSEADEEFYLSVGSPSVL 162
E+ N KN P DS+KI + E D +L
Sbjct: 111182 KESEN-------------------KNFPNDSRKIIQTEFPNESKECDNIQFLK------- 111283
Query: 163 LDAKTSVSQNVIPSSAKKRETYTFENSVNMLPSSTEVSVKTK--KRLNFDDKVMLKKIEI 220
D+K S + S +KR+ + E+ + P+ + S + K + D+ IEI
Sbjct: 111284 -DSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI 111460
Query: 221 DNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTL 265
N+ S E KT +S N++ + + I SF +
Sbjct: 111461 INRRS-ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEI 111592
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 19, 2002 12:00 AM
Number of letters in database: 587,334,133
Number of sequences in database: 1,164,257
Lambda K H
0.310 0.128 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,476,619,104
Number of Sequences: 1164257
Number of extensions: 59878293
Number of successful extensions: 236596
Number of sequences better than 10.0: 236
Number of HSP's better than 10.0 without gapping: 37483
Number of HSP's successfully gapped in prelim test: 12128
Number of HSP's that attempted gapping in prelim test: 166861
Number of HSP's gapped (non-prelim): 120025
length of query: 943
length of database: 1,627,433,809
effective HSP length: 145
effective length of query: 798
effective length of database: 1,458,616,544
effective search space: 1163976002112
effective search space used: 1163976002112
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 84 (37.0 bits)