TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(448 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,164,257 sequences; 587,334,133 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
gb|AF029750.1|AF029750 Homo sapiens tapasin (NGS-17) mRNA, ... 727 0.0
gb|AF009510.1|AF009510 Homo sapiens tapasin mRNA, complete cds 727 0.0
gb|BC010279.1|BC010279 Homo sapiens, clone MGC:5246 IMAGE:3... 727 0.0
ref|NM_003190.1| Homo sapiens TAP binding protein (tapasin)... 725 0.0
emb|Y13582.1|HSTAPA Homo sapiens mRNA for TAP-associated pr... 725 0.0
dbj|AB010639.1|AB010639 Homo sapiens mRNA for Tapasin*02, c... 724 0.0
ref|XM_042605.1| Homo sapiens similar to TAPASIN PRECURSOR ... 724 0.0
gb|AF314222.1|AF314222 Homo sapiens tapasin mRNA, complete ... 687 0.0
gb|AF106278.1|AF106278 Mus musculus tapasin mRNA, complete cds 549 e-154
gb|BC015074.1|BC015074 Mus musculus, TAP binding protein, c... 548 e-154
dbj|AK014566.1|AK014566 Mus musculus 0 day neonate skin cDN... 548 e-154
ref|NM_009318.1| Mus musculus TAP binding protein (Tapbp), ... 548 e-154
emb|AJ316613.1|MMU316613 Mus musculus mRNA for tapasin (TPN... 548 e-154
gb|AF043943.1|AF043943 Mus musculus tapasin mRNA, complete cds 546 e-153
ref|NM_033098.1| Rattus norvegicus Tap-binding protein (Tap... 541 e-152
emb|AJ400732.1|RNO400732 Rattus norvegicus mRNA for tapasin... 541 e-152
gb|BC013236.1|BC013236 Mus musculus, clone IMAGE:3583560, mRNA 525 e-147
gb|AF067286.3|AF067286 Homo sapiens tapasinas (tapasin) mRN... 449 e-124
emb|AL662827.3|AL662827 Human DNA sequence from clone XXbac... 283 2e-74
dbj|AB012622.1|AB012622 Homo sapiens gene for Tapasin*01, p... 283 2e-74
dbj|AB012920.1|AB012920 Homo sapiens gene for Tapasin*02, p... 281 1e-73
emb|Z97184.1|HSF0811 Human DNA sequence from clone ICRF6c-C... 281 1e-73
emb|AL662820.6|AL662820 Human DNA sequence from clone XXbac... 281 1e-73
dbj|AK003013.1|AK003013 Mus musculus adult male brain cDNA,... 263 2e-68
gb|AF110520.1|MMHC425O18 Mus musculus major histocompatibil... 227 2e-57
gb|AF100956.1|AF100956 Mus musculus major histocompatibilit... 227 2e-57
emb|AJ316612.1|MMU316612 Mus musculus gene for tapasin (TAP... 227 2e-57
gb|AF137538.1|AF137538 Danio rerio clone ODare-Tpsn-C5o tap... 134 1e-29
emb|AJ005071.1|GGAJ5071 Gallus gallus mRNA for tapasin prot... 132 7e-29
emb|Z97183.1|HSICB2046 Human DNA sequence from clone ICRF6c... 128 1e-27
gb|AF137537.1|AF137537 Danio rerio clone O42-M3-2GO tapasin... 92 1e-16
dbj|AB073377.1|AB073377 Oryzias latipes DNA, MHC Class I Re... 59 3e-13
emb|AJ005072.1|GGAJ5072 Gallus gallus mRNA for Tapasin, T8.4 74 2e-11
gb|BC017613.1|BC017613 Mus musculus, clone MGC:27679 IMAGE:... 73 5e-11
gb|BC015017.1|BC015017 Homo sapiens, clone MGC:8836 IMAGE:3... 72 1e-10
ref|NM_018009.1| Homo sapiens hypothetical protein FLJ10143... 72 1e-10
dbj|AK001005.1|AK001005 Homo sapiens cDNA FLJ10143 fis, clo... 72 1e-10
dbj|AK002056.2|AK002056 Homo sapiens cDNA FLJ11194 fis, clo... 72 1e-10
emb|AJ004999.1|GGAJ4999 Gallus gallus tapasin gene, complet... 65 2e-08
emb|AL023516.1|GGBLOCUS Gallus gallus (chicken) DNA sequenc... 64 2e-08
gb|AC005840.2|AC005840 Homo sapiens complete sequence of a ... 45 0.014
gb|AC006064.9|AC006064 Homo sapiens 12p13.3 PAC RPCI5-940J5... 45 0.014
gb|AF084934.1|AF084934 Rattus norvegicus Class II MHC RT1.D... 43 0.053
gb|AF084932.1|AF084932 Rattus norvegicus Class II MHC RT1.D... 43 0.053
gb|M12382.1|RATMHEBC Rat MHC RT1 class II E-beta chain mRNA... 43 0.053
emb|X53054.1|RNRTD1 Rat mRNA for RT1.D beta chain 43 0.069
emb|AL139158.11|AL139158 Human DNA sequence from clone RP5-... 42 0.090
gb|AF277661.1|AF277661 Caiman crocodilus MHC class II beta ... 42 0.15
dbj|D86616.1|D86616 Feline herpesvirus 1 genomic DNA for gl... 42 0.15
emb|AJ293808.1|GMO293808 Gadus morhua mRNA for immunoglobul... 42 0.15
gb|M60063.1|MACMHDRBE Macaca nemestrina MHC class II Mane-D... 41 0.26
gb|AF256652.1|AF256652 Caiman crocodilus MHC class II beta ... 40 0.34
emb|X75612.1|ECPK42 E.caballus mRNA for immunoglobulin kapp... 40 0.34
gb|U17165.1|CMU17165 Cricetulus migratorius Ig kappa light ... 40 0.34
emb|AJ293807.1|GMO293807 Gadus morhua mRNA for immunoglobul... 40 0.34
gb|U17870.1|CMU17870 Cricetulus migratorius 145.2c11 kappa ... 40 0.34
emb|X07174.1|GGIGGH1 Chicken mRNA for IgG H-chain (HC36) D-J-C 40 0.44
gb|L07790.1|MVIIGLVJCA Mink immunoglobulin lambda chain (IG... 40 0.44
gb|AF256651.1|AF256651 Caiman crocodilus MHC class II beta ... 40 0.44
gb|U23960.1|ACU23960 Aphelocoma coerulescens isolate 2.4 MH... 40 0.44
ref|XM_090120.1| Homo sapiens similar to unnamed protein pr... 40 0.58
gb|M97616.1|SQIDRB Scurius aberti aberti (A85) MHC class II... 39 0.76
gb|AC004973.1|AC004973 Homo sapiens PAC clone RP5-1139I1 fr... 39 0.76
gb|M27015.1|HUMHLADRWB Human lymphocyte antigen (DRw8) mRNA 39 0.99
gb|M27126.1|HUMHLADRWC Human lymphocyte antigen (DRw8) mRNA 39 0.99
gb|U23962.1|ACU23962 Aphelocoma coerulescens isolate 3.2 MH... 39 0.99
gb|AF328738.1|AF328738 Agelaius phoeniceus cosmid Rwcos3, p... 39 1.3
gb|M76490.1|SOEMHCIIDR Tamarin MHC class II (DRB*03) proces... 39 1.3
gb|M61771.1|HUMIGLCC Human Ig germline lambda-chain gene C-... 39 1.3
emb|X51755.1|HSIGLAMB Human lambda-immunoglobulin constant ... 39 1.3
gb|AC009057.8| Homo sapiens chromosome 16 clone RP11-274A17... 39 1.3
gb|M64307.1|HEFIGLAAA H.francisci Ig rearranged L-chain mRN... 39 1.3
emb|X57808.1|HSIGVL008 Human germline immunoglobulin lambda... 39 1.3
dbj|D87017.2|D87017 Homo sapiens immunoglobulin lambda gene... 39 1.3
gb|AC002060.3|AC002060 Homo sapiens Chromosome 22q11.2 BAC ... 39 1.3
ref|XM_062429.1| Homo sapiens similar to dJ553F4.3 (novel z... 38 1.7
emb|X75613.1|ECJKCK E.caballus Jk-Ck gene 38 1.7
gb|AY055780.1| Ornithorhynchus anatinus IgE immunoglobulin ... 38 1.7
emb|X57823.1|HSIGVL033 Human rearranged immunoglobulin lamb... 38 1.7
gb|M60059.1|MACMHDRBA Macaca nemestrina MHC class II Mane-D... 38 2.2
gb|L02545.1|HUMMHDR2A Homo sapiens (clone HLA-DR2/1-4) MHC ... 38 2.2
gb|M28583.1|HUMMHCDW2C Human (clone FJ0-1) MHC class II DR ... 38 2.2
gb|U23975.1|ACU23975 Aphelocoma coerulescens isolate 2.1 MH... 38 2.2
gb|U23973.1|ACU23973 Aphelocoma coerulescens isolate 1.2 MH... 38 2.2
gb|U23966.1|ACU23966 Aphelocoma coerulescens isolate 3.6 MH... 38 2.2
gb|U23964.1|ACU23964 Aphelocoma coerulescens isolate 3.4 MH... 38 2.2
gb|U23963.1|ACU23963 Aphelocoma coerulescens isolate 3.3 MH... 38 2.2
dbj|AB052658.1|AB052658 Paralichthys olivaceus mRNA for imm... 38 2.2
gb|M28584.1|HUMMHCDW2D Human (clone DHO-8) MHC class II DR ... 38 2.2
gb|M20504.1|HUMMHDRGB Human MHC class II HLA DR-beta-2 mRNA... 38 2.2
gb|M16959.1|HUMMHDRA2F Human MHC class II HLA-DR2 (non-Dw2/... 38 2.2
gb|M16957.1|HUMMHDRA2D Human MHC class II HLA-DR2 (Dw2) b-a... 38 2.2
emb|Z27164.1|PFMHCDR02 P.fulvus MHC class II DRB gene, exon... 38 2.2
gb|U56640.1|HSU56640 Homo sapiens MHC class II HLA-DR2 (HLA... 38 2.2
gb|L27742.1|MACDRBW201 Macaca mulatta MHC class II DRB mRNA... 38 2.2
gb|M20430.1|HUMMHDRWA Human MHC class II HLA-DR-beta (DR2-D... 38 2.2
emb|AL158165.15|AL158165 Human DNA sequence from clone RP11... 38 2.2
dbj|AB062112.1| Homo sapiens HLA-DRB1*1405 mRNA for MHC cla... 37 2.9
gb|M60060.1|MACMHDRBB Macaca nemestrina MHC class II Mane-D... 37 2.9
gb|M30387.1|MUSIGLBB Mouse Ig lambda-chain mRNA, 3' flank 37 2.9
gb|AF256650.1|AF256650 Caiman crocodilus MHC class II alpha... 37 2.9
gb|U96161.2|U96161 Drosophila takahashii putative amylase-r... 37 2.9
gb|S56369.1|S56369 Popy-DRB5*0603=major histocompatibility ... 37 2.9
ref|XM_042483.1| Homo sapiens similar to HLA CLASS II HISTO... 37 3.8
emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N1... 37 3.8
gb|M11867.1|HUMMHDR5B Human MHC class II HLA DR5 DR-beta-ch... 37 3.8
gb|BC008403.1|BC008403 Homo sapiens, Similar to major histo... 37 3.8
ref|NM_017239.1| Rattus norvegicus myosin heavy chain, card... 37 3.8
emb|X15938.1|RNMHCA Rat mRNA for alpha cardiac myosin heavy... 37 3.8
dbj|D00943.1|HUMCAMHC Homo sapiens mRNA for cardiac alpha-m... 37 3.8
ref|XM_069903.1| Homo sapiens similar to KIAA1486 protein (... 37 3.8
gb|L76133.1|HUMMH1302D Homo sapiens MHC lymphocyte antigen ... 37 3.8
gb|U65585.1|HSU65585 Homo sapiens MHC class II antigen (HLA... 37 3.8
gb|U83584.1|HSU83584 Homo sapiens MHC class II antigen HLA-... 37 3.8
gb|U83583.1|HSU83583 Homo sapiens MHC class II antigen HLA-... 37 3.8
gb|M26038.1|HUMMHDRBBA Human MHC class II DR beta mRNA, com... 37 3.8
emb|X99895.1|HSDRB1327 H.sapiens mRNA for major histocompat... 37 3.8
gb|BC007920.1|BC007920 Homo sapiens, clone MGC:14111 IMAGE:... 37 3.8
gb|U75316.1|SSU75316 Sus scrofa beta-myosin heavy chain mRN... 37 3.8
gb|U95817.1|HSU95817 Human MHC class II antigen HLA-DR-beta... 37 3.8
emb|AJ297584.1|HSA297584 Homo sapiens partial mRNA for MHC ... 37 3.8
emb|AJ297583.1|HSA297583 Homo sapiens partial mRNA for MHC ... 37 3.8
emb|X00699.1|HSHLDRB2 Human mRNA fragment for class II hist... 37 3.8
gb|M27689.1|HUMMHDRW Human MHC class II HLA-DR beta gene (D... 37 3.8
emb|X07273.1|MAMYOBH Hamster mRNA for cardiac beta-myosin h... 37 3.8
gb|M60061.1|MACMHDRBC Macaca nemestrina MHC class II Mane-D... 37 3.8
gb|J00752.1|RATMYHCB Rat cardiac myosin heavy chain insert ... 37 3.8
gb|M27635.1|HUMHLAW12R Homo sapiens MHC HLA-DRw12 allele mR... 37 3.8
gb|M22048.1|HUMMHDBW3 Human MHC class II HLA-DRw11-beta-I c... 37 3.8
emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 ... 37 3.8
gb|U23970.1|CMU23970 Agelaius phoeniceus isolate 1.1 MHC cl... 37 3.8
emb|AJ302075.1|HSA302075 Homo sapiens mRNA for MHC class II... 37 3.8
emb|AJ297587.1|HSA297587 Homo sapiens mRNA for MHC class II... 37 3.8
emb|AJ297585.1|HSA297585 Homo sapiens mRNA for MHC class II... 37 3.8
emb|AJ293696.1|HSA293696 Homo sapiens partial HLA-DRB1 gene... 37 3.8
gb|M15377.1|HUMHLADB2 Human HLA-DR beta gene, exon 3 from c... 37 3.8
emb|AL137027.17|AL137027 Human DNA sequence from clone RP5-... 37 4.9
gb|AY028521.1|AY028520S2 Homo sapiens MHC class II antigen ... 37 4.9
gb|AY028519.1|AY028518S2 Homo sapiens cell-line MADURA MHC ... 37 4.9
gb|AY028517.1|AY028516S2 Homo sapiens cell-line BM9 MHC cla... 37 4.9
gb|AY028515.1|AY028514S2 Homo sapiens cell-line BTB MHC cla... 37 4.9
gb|AF316619.1|AF315825S2 Homo sapiens MHC class II antigen ... 37 4.9
gb|AF335320.1|AF335319S2 Homo sapiens MHC class II antigen ... 37 4.9
gb|J03011.1|HUMIGLCB8 Homo sapiens immunoglobulin lambda li... 37 4.9
gb|AF084933.1|AF084933 Rattus norvegicus Class II MHC RT1.D... 37 4.9
gb|AF088908.1|AF088908 Neurospora crassa clock-controlled g... 37 4.9
gb|AC008687.5| Homo sapiens chromosome 19 clone CTB-60B18, ... 37 4.9
gb|AE005970.1|AE005970 Caulobacter crescentus section 296 ... 37 4.9
gb|S76136.1|S76136 Mane-DRB*04=class II major histocompatib... 37 4.9
gb|M15561.1|RATMHHBC Rat MHC class II RT1.B-beta2 gene, exon 1 37 4.9
gb|M60062.1|MACMHDRBD Macaca nemestrina MHC class II Mane-D... 37 4.9
gb|M30161.1|MUSMHEBA02 Mouse MHC class II E-beta 2 gene, ex... 37 4.9
gb|U23965.1|ACU23965 Aphelocoma coerulescens isolate 3.5 MH... 37 4.9
gb|U23961.1|ACU23961 Aphelocoma coerulescens isolate 3.1 MH... 37 4.9
gb|AC013451.8|AC013451 Homo sapiens chromosome 14 clone CTD... 37 4.9
gb|AF030997.1|AF030997 Agelaius phoeniceus MHC class II B (... 37 4.9
gb|U23971.1|CMU23971 Agelaius phoeniceus isolate 1.2 MHC cl... 37 4.9
gb|U23967.1|ACU23967 Agelaius phoeniceus isolate 1.3 MHC cl... 37 4.9
emb|AJ297582.1|HSA297582 Homo sapiens mRNA for MHC class II... 37 4.9
dbj|AK056808.1|AK056808 Homo sapiens cDNA FLJ32246 fis, clo... 37 4.9
gb|AF170972.1|AF170972 Agelaius phoeniceus cosmid 10, compl... 36 6.4
emb|X99062.1|GGTNY G.gallus mRNA for tenascin-Y 36 6.4
emb|AJ318021.1|HSA318021 Homo sapiens mRNA for immunoglobul... 36 6.4
ref|NM_005529.2| Homo sapiens heparan sulfate proteoglycan ... 36 6.4
emb|X62515.1|HSBMHSP H.sapiens mRNA for basement membrane h... 36 6.4
gb|J00751.1|RATMYHCA Rat cardiac myosin heavy chain insert ... 36 6.4
emb|AJ318022.1|HSA318022 Homo sapiens mRNA for immunoglobul... 36 6.4
dbj|AB027448.1|AB027448 Homo sapiens mRNA for anti HBs anti... 36 6.4
gb|AF464050.1| Sus scrofa MHC class II antigen (SLA-DRB) mR... 36 6.4
emb|AL096768.7|HSJ858B16 Human DNA sequence from clone RP5-... 36 6.4
dbj|AP004532.1|AP004532 Lotus japonicus genomic DNA, chromo... 36 8.4
gb|AF464037.1| Sus scrofa MHC class II antigen (SLA-DRB) mR... 36 8.4
gb|M13151.1|BOVMIS Bovine Muellerian inhibiting substance m... 36 8.4
emb|Z11521.1|OAMHCDRB3 O.aries gene for MHC class-II DRB (O... 36 8.4
emb|Z49880.1|OADOBB12 O.aries MHC class ll DOB gene (beta 1... 36 8.4
gb|BC012876.1|BC012876 Homo sapiens, clone MGC:17259 IMAGE:... 36 8.4
gb|BC007782.1|BC007782 Homo sapiens, clone MGC:12849 IMAGE:... 36 8.4
gb|J00252.1|HUMIGLCB1 Homo sapiens immunoglobulin lambda li... 36 8.4
emb|Y09922.1|MMSEZ6EX1 M.musculus flanking region of exon 1... 36 8.4
dbj|D87023.1|D87023 Homo sapiens immunoglobulin lambda gene... 36 8.4
gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, co... 36 8.4
emb|X57819.1|HSIGVL029 Human rearranged immunoglobulin lamb... 36 8.4
emb|AJ319670.1|HSA319670 Homo sapiens germline mRNA for imm... 36 8.4
gb|U23972.1|ACU23972 Aphelocoma coerulescens isolate 1.1 MH... 36 8.4
gb|U23958.1|ACU23958 Aphelocoma coerulescens isolate 2.2 MH... 36 8.4
gb|M17378.1|HUMMHDRBL Human MHC class II HLA-DR-beta mRNA (... 36 8.4
emb|AL162417.23|AL162417 Human DNA sequence from clone RP11... 36 8.4
emb|X91846.1|SSMYHCC Sus scrofa mRNA for cardiac myosin hea... 36 8.4
dbj|AK057174.1|AK057174 Homo sapiens cDNA FLJ32612 fis, clo... 36 8.4
dbj|AB053226.1|AB053226 Sus scrofa MyHC-slow mRNA for myosi... 36 8.4
gb|M12995.1|HAMMYCA Hamster cardiac alpha-myosin heavy chai... 36 8.4
gb|M20531.1|RABC2ATP1 Rabbit fast twitch muscle Ca2+ ATPase... 36 8.4
gb|AF464051.1| Sus scrofa MHC class II antigen (SLA-DRB) mR... 36 8.4
ref|XM_086822.1| Homo sapiens hypothetical gene supported b... 36 8.4
gb|AE000082.1|AE000082 Rhizobium sp. NGR234 plasmid pNGR234... 36 8.4
gb|L38565.1|HSL38565 Human clone tat107Fab, immunoglobulin ... 36 8.4
gb|AC002319.1|AC002319 Homo sapiens chromosome 9q34, clone ... 36 8.4
gb|AC073324.6|AC073324 Homo sapiens BAC clone RP11-339F13 f... 36 8.4
emb|AL160278.24| Human DNA sequence from clone RP11-574G7 o... 36 8.4
emb|AL591174.13|AL591174 Mouse DNA sequence from clone RP23... 28 9.0
>gb|AF029750.1|AF029750 Homo sapiens tapasin (NGS-17) mRNA, complete cds
Length = 3500
Score = 727 bits (1876), Expect = 0.0
Identities = 362/427 (84%), Positives = 362/427 (84%)
Frame = +3
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
PAVIECWFVEDASGKGLAKRPGA SVHDPAGALQAAFRR
Sbjct: 102 PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRR 281
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSI
Sbjct: 282 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRP 461
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP
Sbjct: 462 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 641
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV
Sbjct: 642 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 821
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY
Sbjct: 822 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 1001
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA
Sbjct: 1002PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 1181
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSV VYLSTCK
Sbjct: 1182CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVGLFLSAFLLLGLFKALGWAAVYLSTCK 1361
Query: 442 DSKKKAE 448
DSKKKAE
Sbjct: 1362DSKKKAE 1382
>gb|AF009510.1|AF009510 Homo sapiens tapasin mRNA, complete cds
Length = 1423
Score = 727 bits (1876), Expect = 0.0
Identities = 362/427 (84%), Positives = 362/427 (84%)
Frame = +2
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
PAVIECWFVEDASGKGLAKRPGA SVHDPAGALQAAFRR
Sbjct: 80 PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRR 259
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSI
Sbjct: 260 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRP 439
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP
Sbjct: 440 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 619
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV
Sbjct: 620 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 799
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY
Sbjct: 800 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 979
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA
Sbjct: 980 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 1159
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSV VYLSTCK
Sbjct: 1160CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVGLFLSAFLLLGLFKALGWAAVYLSTCK 1339
Query: 442 DSKKKAE 448
DSKKKAE
Sbjct: 1340DSKKKAE 1360
>gb|BC010279.1|BC010279 Homo sapiens, clone MGC:5246 IMAGE:3047913, mRNA, complete cds
Length = 2996
Score = 727 bits (1876), Expect = 0.0
Identities = 362/427 (84%), Positives = 362/427 (84%)
Frame = +2
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
PAVIECWFVEDASGKGLAKRPGA SVHDPAGALQAAFRR
Sbjct: 236 PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRR 415
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSI
Sbjct: 416 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRP 595
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP
Sbjct: 596 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 775
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV
Sbjct: 776 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 955
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY
Sbjct: 956 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 1135
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA
Sbjct: 1136PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 1315
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSV VYLSTCK
Sbjct: 1316CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVGLFLSAFLLLGLFKALGWAAVYLSTCK 1495
Query: 442 DSKKKAE 448
DSKKKAE
Sbjct: 1496DSKKKAE 1516
>ref|NM_003190.1| Homo sapiens TAP binding protein (tapasin) (TAPBP), mRNA
Length = 1586
Score = 725 bits (1871), Expect = 0.0
Identities = 361/427 (84%), Positives = 362/427 (84%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
PAVIECWFVEDASGKGLAKRPGA SVHDPAGALQAAFRR
Sbjct: 193 PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRR 372
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSI
Sbjct: 373 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRP 552
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP
Sbjct: 553 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 732
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV
Sbjct: 733 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 912
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY
Sbjct: 913 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 1092
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA
Sbjct: 1093PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 1272
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CRIHHPSLPASGRSAEVTLEVAGLSGPSLE+SV VYLSTCK
Sbjct: 1273CRIHHPSLPASGRSAEVTLEVAGLSGPSLENSVGLFLSAFLLLGLFKALGWAAVYLSTCK 1452
Query: 442 DSKKKAE 448
DSKKKAE
Sbjct: 1453DSKKKAE 1473
>emb|Y13582.1|HSTAPA Homo sapiens mRNA for TAP-associated protein
Length = 1586
Score = 725 bits (1871), Expect = 0.0
Identities = 361/427 (84%), Positives = 362/427 (84%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
PAVIECWFVEDASGKGLAKRPGA SVHDPAGALQAAFRR
Sbjct: 193 PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRR 372
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSI
Sbjct: 373 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRP 552
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP
Sbjct: 553 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 732
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV
Sbjct: 733 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 912
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY
Sbjct: 913 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 1092
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA
Sbjct: 1093PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 1272
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CRIHHPSLPASGRSAEVTLEVAGLSGPSLE+SV VYLSTCK
Sbjct: 1273CRIHHPSLPASGRSAEVTLEVAGLSGPSLENSVGLFLSAFLLLGLFKALGWAAVYLSTCK 1452
Query: 442 DSKKKAE 448
DSKKKAE
Sbjct: 1453DSKKKAE 1473
>dbj|AB010639.1|AB010639 Homo sapiens mRNA for Tapasin*02, complete cds
Length = 1395
Score = 724 bits (1870), Expect = 0.0
Identities = 361/427 (84%), Positives = 361/427 (84%)
Frame = +2
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
PAVIECWFVEDASGKGLAKRPGA SVHDPAGALQAAFRR
Sbjct: 77 PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRR 256
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSI
Sbjct: 257 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRP 436
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP
Sbjct: 437 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 616
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLP V
Sbjct: 617 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTV 796
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY
Sbjct: 797 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 976
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA
Sbjct: 977 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 1156
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSV VYLSTCK
Sbjct: 1157CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVGLFLSAFLLLGLFKALGWAAVYLSTCK 1336
Query: 442 DSKKKAE 448
DSKKKAE
Sbjct: 1337DSKKKAE 1357
>ref|XM_042605.1| Homo sapiens similar to TAPASIN PRECURSOR (TPSN) (TPN) (TAP-BINDING
PROTEIN) (TAP-ASSOCIATED PROTEIN) (NGS-17) (LOC154605),
mRNA
Length = 1568
Score = 724 bits (1870), Expect = 0.0
Identities = 361/427 (84%), Positives = 361/427 (84%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
PAVIECWFVEDASGKGLAKRPGA SVHDPAGALQAAFRR
Sbjct: 193 PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRR 372
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSI
Sbjct: 373 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRP 552
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP
Sbjct: 553 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 732
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLP V
Sbjct: 733 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTV 912
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY
Sbjct: 913 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 1092
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA
Sbjct: 1093PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 1272
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSV VYLSTCK
Sbjct: 1273CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVGLFLSAFLLLGLFKALGWAAVYLSTCK 1452
Query: 442 DSKKKAE 448
DSKKKAE
Sbjct: 1453DSKKKAE 1473
>gb|AF314222.1|AF314222 Homo sapiens tapasin mRNA, complete cds, alternatively spliced
Length = 1239
Score = 687 bits (1774), Expect = 0.0
Identities = 339/385 (88%), Positives = 339/385 (88%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
PAVIECWFVEDASGKGLAKRPGA SVHDPAGALQAAFRR
Sbjct: 64 PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRR 243
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSI
Sbjct: 244 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRP 423
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP
Sbjct: 424 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 603
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV
Sbjct: 604 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 783
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY
Sbjct: 784 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 963
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA
Sbjct: 964 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 1143
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLS 406
CRIHHPSLPASGRSAEVTLEVAG S
Sbjct: 1144CRIHHPSLPASGRSAEVTLEVAGKS 1218
>gb|AF106278.1|AF106278 Mus musculus tapasin mRNA, complete cds
Length = 1398
Score = 549 bits (1414), Expect = e-154
Identities = 269/426 (63%), Positives = 300/426 (70%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
P IECWFVEDA G GL+K+P V DPAG L AAFRR
Sbjct: 73 PEAIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFKVDDPAGMLLAAFRR 252
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS+
Sbjct: 253 YPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVSSTLFSLSSLLRP 432
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTH PAPRV+LG+DA+LDL FAY P E + SL GPPP
Sbjct: 433 QPEPLREPVVITMATVVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPP 612
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQH GKGHLLLAATPGL G+MP AQE A AFAAWDDDEPWGPWTGNGTFWLP V
Sbjct: 613 FGLEWRRQHRGKGHLLLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAV 792
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
+P QEG YLAT+HLPYLQGQV+LEL V+K P+VSL PA + AAPGEAPPELLCL SHF+
Sbjct: 793 KPSQEGVYLATVHLPYLQGQVSLELTVHKAPRVSLTPAPVVWAAPGEAPPELLCLASHFF 972
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PS GLEV+WELRGGPGG S+K EG+ WLS +RHHSDGSVS SGHLQ PPVT +QHG Y
Sbjct: 973 PSEGLEVKWELRGGPGGSSRKVEGKTWLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYV 1152
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CR++H SLPASGRSA+VTLEVAG SGPS+ED + Y + +
Sbjct: 1153CRVYHSSLPASGRSADVTLEVAGFSGPSIEDGIGLFLSAFLLLGLLKVLGWLAAYWTIPE 1332
Query: 442 DSKKKA 447
SK+KA
Sbjct: 1333VSKEKA 1350
>gb|BC015074.1|BC015074 Mus musculus, TAP binding protein, clone MGC:13789 IMAGE:4223922,
mRNA, complete cds
Length = 2636
Score = 548 bits (1412), Expect = e-154
Identities = 264/393 (67%), Positives = 292/393 (74%)
Frame = +3
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
P IECWFVEDA G GL+K+P V DPAG L AAFRR
Sbjct: 96 PEAIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFKVDDPAGMLLAAFRR 275
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS+
Sbjct: 276 YPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVSSTLFSLSSLLRP 455
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTH PAPRV+LG+DA+LDL FAY P E + SL GPPP
Sbjct: 456 QPEPLREPVVITMATVVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDVGPPP 635
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQH GKGHLLLAATPGL G+MP AQE A AFAAWDDDEPWGPWTGNGTFWLP V
Sbjct: 636 FGLEWRRQHRGKGHLLLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAV 815
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
+P QEG YLAT+HLPYLQGQV+LEL V+K P+VSL PA + AAPGEAPPELLCL SHF+
Sbjct: 816 KPSQEGVYLATVHLPYLQGQVSLELTVHKAPRVSLTPAPVVWAAPGEAPPELLCLASHFF 995
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
PS GLEV+WELRGGPGG S+K EG+ WLS +RHHSDGSVS SGHLQ PPVT +QHG Y
Sbjct: 996 PSEGLEVKWELRGGPGGSSRKVEGKTWLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYV 1175
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSV 414
CR++H SLPASGRSA+VTLEVAG SGPS+ED +
Sbjct: 1176CRVYHSSLPASGRSADVTLEVAGFSGPSIEDGI 1274
>dbj|AK014566.1|AK014566 Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
library, clone:4632411I06:TAP binding protein, full
insert sequence
Length = 2603
Score = 548 bits (1412), Expect = e-154
Identities = 263/393 (66%), Positives = 293/393 (73%)
Frame = +3
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
P IECWFVEDA G GL+K+P V DPAG L AAFRR
Sbjct: 138 PEAIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFKVDDPAGMLLAAFRR 317
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS+
Sbjct: 318 YPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVSSTLFSLSSLLRP 497
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTH PAPRV+LG+DA+LDL FAY P E + SL GPPP
Sbjct: 498 QPEPLREPVVITMATVVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPP 677
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQH GKGHLLLAATPGL G+MP+AQE A AFAAWDDDEPWGPWTGNGTFWLP V
Sbjct: 678 FGLEWRRQHRGKGHLLLAATPGLAGRMPSAQEKATAFAAWDDDEPWGPWTGNGTFWLPAV 857
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
+P QEG YLAT+HLPYLQGQV+LEL V+K P+VSL PA + AAPGEAPPELLCL SHF+
Sbjct: 858 KPSQEGVYLATVHLPYLQGQVSLELTVHKAPRVSLTPAPVVWAAPGEAPPELLCLASHFF 1037
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
P+ GLEV+WELRGGPGG S+K EG+ WLS +RHHSDGSVS SGHLQ PPVT +QHG Y
Sbjct: 1038PAEGLEVKWELRGGPGGSSRKVEGKTWLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYV 1217
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSV 414
CR++H SLPASGRSA+VTLEVAG SGPS+ED +
Sbjct: 1218CRVYHSSLPASGRSADVTLEVAGFSGPSIEDGI 1316
>ref|NM_009318.1| Mus musculus TAP binding protein (Tapbp), mRNA
Length = 1398
Score = 548 bits (1411), Expect = e-154
Identities = 268/426 (62%), Positives = 300/426 (69%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
P IECWFVEDA G GL+K+P V DPAG L AAFRR
Sbjct: 73 PEAIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFKVDDPAGMLLAAFRR 252
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS+
Sbjct: 253 YPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVSSTLFSLSSLLRP 432
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTH PAPRV+LG+DA+LDL FAY P E + SL GPPP
Sbjct: 433 QPEPLREPVVITMATVVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPP 612
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQH GKGHLLLAATPGL G+MP AQE A AFAAWDDDEPWGPWTGNGTFWLP V
Sbjct: 613 FGLEWRRQHRGKGHLLLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAV 792
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
+P QEG YLAT+HLPYLQGQV+LEL V+K P+VSL PA + AAPGEAPPELLCL SHF+
Sbjct: 793 KPSQEGVYLATVHLPYLQGQVSLELTVHKAPRVSLTPAPVVWAAPGEAPPELLCLASHFF 972
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
P+ GLEV+WELRGGPGG S+K EG+ WLS +RHHSDGSVS SGHLQ PPVT +QHG Y
Sbjct: 973 PAEGLEVKWELRGGPGGSSRKVEGKTWLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYV 1152
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CR++H SLPASGRSA+VTLEVAG SGPS+ED + Y + +
Sbjct: 1153CRVYHSSLPASGRSADVTLEVAGFSGPSIEDGIGLFLSAFLLLGLLKVLGWLAAYWTIPE 1332
Query: 442 DSKKKA 447
SK+KA
Sbjct: 1333VSKEKA 1350
>emb|AJ316613.1|MMU316613 Mus musculus mRNA for tapasin (TPN gene)
Length = 1511
Score = 548 bits (1411), Expect = e-154
Identities = 268/426 (62%), Positives = 300/426 (69%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
P IECWFVEDA G GL+K+P V DPAG L AAFRR
Sbjct: 73 PEAIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFKVDDPAGMLLAAFRR 252
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS+
Sbjct: 253 YPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVSSTLFSLSSLLRP 432
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTH PAPRV+LG+DA+LDL FAY P E + SL GPPP
Sbjct: 433 LPEPLREPVVITMATVVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPP 612
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQH GKGHLLLAATPGL G+MP AQE A AFAAWDDDEPWGPWTGNGTFWLP V
Sbjct: 613 FGLEWRRQHRGKGHLLLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAV 792
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
+P QEG YLAT+HLPYLQGQV+LEL V+K P+VSL PA + AAPGEAPPELLCL SHF+
Sbjct: 793 KPSQEGVYLATVHLPYLQGQVSLELTVHKAPRVSLTPAPVVWAAPGEAPPELLCLASHFF 972
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
P+ GLEV+WELRGGPGG S+K EG+ WLS +RHHSDGSVS SGHLQ PPVT +QHG Y
Sbjct: 973 PAEGLEVKWELRGGPGGSSRKVEGKTWLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYV 1152
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CR++H SLPASGRSA+VTLEVAG SGPS+ED + Y + +
Sbjct: 1153CRVYHSSLPASGRSADVTLEVAGFSGPSIEDGIGLFLSAFLLLGLLKVLGWLAAYWTIPE 1332
Query: 442 DSKKKA 447
SK+KA
Sbjct: 1333VSKEKA 1350
>gb|AF043943.1|AF043943 Mus musculus tapasin mRNA, complete cds
Length = 1534
Score = 546 bits (1406), Expect = e-153
Identities = 267/426 (62%), Positives = 299/426 (69%)
Frame = +3
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
P IECWFVEDA G GL+K+P V DPAG L AAFRR
Sbjct: 141 PEAIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFKVDDPAGMLLAAFRR 320
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS+
Sbjct: 321 YPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVSSTLFSLSSLLRP 500
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTH PAPRV+LG+DA+LDL FAY P E + SL GPPP
Sbjct: 501 QPEPLREPVVITMATVVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPP 680
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQH GKGHLLLAATPGL G+MP AQE A AFAAWDDDEPWGPWTGNGTFWLP V
Sbjct: 681 FGLEWRRQHRGKGHLLLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAV 860
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321
+P QEG YL T+HLPYLQGQV+LEL V+K P+VSL PA + AAPGEAPPELLCL SHF+
Sbjct: 861 KPSQEGVYLGTVHLPYLQGQVSLELTVHKGPRVSLTPAPVVWAAPGEAPPELLCLASHFF 1040
Query: 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYA 381
P+ GLEV+WELRGGPGG S+K EG+ WLS +RHHSDGSVS SGHLQ PPVT +QHG Y
Sbjct: 1041PAEGLEVKWELRGGPGGSSRKVEGKTWLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYV 1220
Query: 382 CRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTCK 441
CR++H SLPASGRSA+VTLEVAG SGPS+ED + Y + +
Sbjct: 1221CRVYHSSLPASGRSADVTLEVAGFSGPSIEDGIGLFLSAFLLLGLLKVLGWLAAYWTIPE 1400
Query: 442 DSKKKA 447
SK+KA
Sbjct: 1401VSKEKA 1418
>ref|NM_033098.1| Rattus norvegicus Tap-binding protein (Tapasin), mRNA
Length = 1557
Score = 541 bits (1395), Expect = e-152
Identities = 270/427 (63%), Positives = 299/427 (69%), Gaps = 1/427 (0%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
P IECWFVEDA G GL+K+P V DPAG L AAFRR
Sbjct: 79 PQTIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFKVDDPAGMLLAAFRR 258
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YP GA APHCEMS ++P PASAKWA GL+P QNC RALDG WLMVS+
Sbjct: 259 YPAGAHAPHCEMSSYIPFPASAKWARGLSPQQNCSRALDGDWLMVSVSGTVFSLSSLLRP 438
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLT PAPR+ LG+DA+LDL FAY PP E A S+A GPPP
Sbjct: 439 LPEPQREPVFITMATVVLTVLTRHPAPRIHLGKDAVLDLRFAYAPPALEDAPSVASGPPP 618
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDD-EPWGPWTGNGTFWLPR 260
FGLEWRRQH GKGHLLLAA PGL +MP A+E AVAFAAWDDD +PWGPWTGNGT WLP
Sbjct: 619 FGLEWRRQHRGKGHLLLAAIPGLLEKMPPAREKAVAFAAWDDDNDPWGPWTGNGTLWLPA 798
Query: 261 VQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHF 320
V P QEG YLAT+HLPYLQGQV+LEL V+KPP+VSL PA + AAPGEAPPELLCLVSHF
Sbjct: 799 VSPSQEGVYLATVHLPYLQGQVSLELTVHKPPRVSLTPAPIVWAAPGEAPPELLCLVSHF 978
Query: 321 YPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARY 380
YP GLEVEWELRGGP G S+KAEG+ W+S +RHHSDGSVS SGHLQ PPVT +QHG RY
Sbjct: 979 YPEEGLEVEWELRGGPEGSSRKAEGKTWVSTVRHHSDGSVSQSGHLQLPPVTDKQHGVRY 1158
Query: 381 ACRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTC 440
ACR+ HPSLP+SGRSAEVTLEVAG SGPS+ED + YL+
Sbjct: 1159ACRVRHPSLPSSGRSAEVTLEVAGFSGPSIEDGIGLFLSAFLLLGLFKALGWMAAYLTIP 1338
Query: 441 KDSKKKA 447
K K+KA
Sbjct: 1339KILKEKA 1359
>emb|AJ400732.1|RNO400732 Rattus norvegicus mRNA for tapasin (tapasin gene)
Length = 1557
Score = 541 bits (1395), Expect = e-152
Identities = 270/427 (63%), Positives = 299/427 (69%), Gaps = 1/427 (0%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
P IECWFVEDA G GL+K+P V DPAG L AAFRR
Sbjct: 79 PQTIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFKVDDPAGMLLAAFRR 258
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YP GA APHCEMS ++P PASAKWA GL+P QNC RALDG WLMVS+
Sbjct: 259 YPAGAHAPHCEMSSYIPFPASAKWARGLSPQQNCSRALDGDWLMVSVSGTVFSLSSLLRP 438
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLT PAPR+ LG+DA+LDL FAY PP E A S+A GPPP
Sbjct: 439 LPEPQREPVFITMATVVLTVLTRHPAPRIHLGKDAVLDLRFAYAPPALEDAPSVASGPPP 618
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDD-EPWGPWTGNGTFWLPR 260
FGLEWRRQH GKGHLLLAA PGL +MP A+E AVAFAAWDDD +PWGPWTGNGT WLP
Sbjct: 619 FGLEWRRQHRGKGHLLLAAIPGLLEKMPPAREKAVAFAAWDDDNDPWGPWTGNGTLWLPA 798
Query: 261 VQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHF 320
V P QEG YLAT+HLPYLQGQV+LEL V+KPP+VSL PA + AAPGEAPPELLCLVSHF
Sbjct: 799 VSPSQEGVYLATVHLPYLQGQVSLELTVHKPPRVSLTPAPIVWAAPGEAPPELLCLVSHF 978
Query: 321 YPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARY 380
YP GLEVEWELRGGP G S+KAEG+ W+S +RHHSDGSVS SGHLQ PPVT +QHG RY
Sbjct: 979 YPEEGLEVEWELRGGPEGSSRKAEGKTWVSTVRHHSDGSVSQSGHLQLPPVTDKQHGVRY 1158
Query: 381 ACRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVXXXXXXXXXXXXXXXXXXXXVYLSTC 440
ACR+ HPSLP+SGRSAEVTLEVAG SGPS+ED + YL+
Sbjct: 1159ACRVRHPSLPSSGRSAEVTLEVAGFSGPSIEDGIGLFLSAFLLLGLFKALGWMAAYLTIP 1338
Query: 441 KDSKKKA 447
K K+KA
Sbjct: 1339KILKEKA 1359
>gb|BC013236.1|BC013236 Mus musculus, clone IMAGE:3583560, mRNA
Length = 2362
Score = 525 bits (1351), Expect = e-147
Identities = 249/347 (71%), Positives = 275/347 (78%)
Frame = +1
Query: 68 VHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVS 127
V DPAG L AAFRRYP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS
Sbjct: 19 VDDPAGMLLAAFRRYPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVS 198
Query: 128 IXXXXXXXXXXXXXXXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPP 187
+ ITMATVVLTVLTH PAPRV+LG+DA+LDL FAY P
Sbjct: 199 VSSTLFSLSSLLRPQPEPLREPVVITMATVVLTVLTHNPAPRVQLGKDAVLDLRFAYAPS 378
Query: 188 TSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPW 247
E + SL GPPPFGLEWRRQH GKGHLLLAATPGL G+MP AQE A AFAAWDDDEPW
Sbjct: 379 ALEGSPSLDVGPPPFGLEWRRQHRGKGHLLLAATPGLAGRMPPAQEKATAFAAWDDDEPW 558
Query: 248 GPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPG 307
GPWTGNGTFWLP V+P QEG YLAT+HLPYLQGQV+LEL V+K P+VSL PA + AAPG
Sbjct: 559 GPWTGNGTFWLPAVKPSQEGVYLATVHLPYLQGQVSLELTVHKAPRVSLTPAPVVWAAPG 738
Query: 308 EAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQ 367
EAPPELLCL SHF+PS GLEV+WELRGGPGG S+K EG+ WLS +RHHSDGSVS SGHLQ
Sbjct: 739 EAPPELLCLASHFFPSEGLEVKWELRGGPGGSSRKVEGKTWLSTIRHHSDGSVSQSGHLQ 918
Query: 368 PPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSV 414
PPVT +QHG Y CR++H SLPASGRSA+VTLEVAG SGPS+ED +
Sbjct: 919 LPPVTAKQHGVHYVCRVYHSSLPASGRSADVTLEVAGFSGPSIEDGI 1059
>gb|AF067286.3|AF067286 Homo sapiens tapasinas (tapasin) mRNA, alternatively spliced,
complete cds
Length = 2202
Score = 449 bits (1156), Expect = e-124
Identities = 223/268 (83%), Positives = 223/268 (83%)
Frame = +3
Query: 22 PAVIECWFVEDASGKGLAKRPGAXXXXXXXXXXXXXXXXXXXXXXSVHDPAGALQAAFRR 81
PAVIECWFVEDASGKGLAKRPGA SVHDPAGALQAAFRR
Sbjct: 72 PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRR 251
Query: 82 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXX 141
YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSI
Sbjct: 252 YPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRP 431
Query: 142 XXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP
Sbjct: 432 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 611
Query: 202 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 261
FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV
Sbjct: 612 FGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRV 791
Query: 262 QPFQEGTYLATIHLPYLQGQVTLELAVY 289
QPFQEGTYLATIHLPYLQGQVTLELAVY
Sbjct: 792 QPFQEGTYLATIHLPYLQGQVTLELAVY 875
Score = 241 bits (614), Expect(2) = 1e-62
Identities = 115/117 (98%), Positives = 116/117 (98%)
Frame = +2
Query: 290 KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 349
+PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL
Sbjct: 1226 EPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 1405
Query: 350 SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAG S
Sbjct: 1406 SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKS 1576
Score = 25.4 bits (54), Expect(2) = 1e-62
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 404 GLSGPSLEDSV 414
GLSGPSLEDSV
Sbjct: 1647 GLSGPSLEDSV 1679
>emb|AL662827.3|AL662827 Human DNA sequence from clone XXbac-165D10 on chromosome 6, complete
sequence [Homo sapiens]
Length = 110794
Score = 283 bits (724), Expect = 2e-74
Identities = 133/135 (98%), Positives = 135/135 (99%)
Frame = -3
Query: 155 ATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 214
++VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG
Sbjct: 32417 SSVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 32238
Query: 215 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIH 274
HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIH
Sbjct: 32237 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIH 32058
Query: 275 LPYLQGQVTLELAVY 289
LPYLQGQVTLELAVY
Sbjct: 32057 LPYLQGQVTLELAVY 32013
Score = 241 bits (614), Expect(2) = 1e-62
Identities = 115/117 (98%), Positives = 116/117 (98%)
Frame = -2
Query: 290 KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 349
+PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL
Sbjct: 31662 EPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 31483
Query: 350 SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAG S
Sbjct: 31482 SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKS 31312
Score = 128 bits (322), Expect = 1e-27
Identities = 61/63 (96%), Positives = 62/63 (97%), Gaps = 1/63 (1%)
Frame = -3
Query: 67 SVH-DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM 125
S+H DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM
Sbjct: 40502 SLHSDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM 40323
Query: 126 VSI 128
VSI
Sbjct: 40322 VSI 40314
Score = 52.8 bits (125), Expect = 7e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -3
Query: 22 PAVIECWFVEDASGKGLAKRPGA 44
PAVIECWFVEDASGKGLAKRPGA
Sbjct: 40850 PAVIECWFVEDASGKGLAKRPGA 40782
Score = 25.4 bits (54), Expect(2) = 1e-62
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 404 GLSGPSLEDSV 414
GLSGPSLEDSV
Sbjct: 31241 GLSGPSLEDSV 31209
>dbj|AB012622.1|AB012622 Homo sapiens gene for Tapasin*01, partial cds
Length = 435
Score = 283 bits (724), Expect = 2e-74
Identities = 133/135 (98%), Positives = 135/135 (99%)
Frame = +3
Query: 155 ATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 214
++VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG
Sbjct: 9 SSVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 188
Query: 215 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIH 274
HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIH
Sbjct: 189 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIH 368
Query: 275 LPYLQGQVTLELAVY 289
LPYLQGQVTLELAVY
Sbjct: 369 LPYLQGQVTLELAVY 413
>dbj|AB012920.1|AB012920 Homo sapiens gene for Tapasin*02, partial cds
Length = 435
Score = 281 bits (718), Expect = 1e-73
Identities = 132/135 (97%), Positives = 134/135 (98%)
Frame = +3
Query: 155 ATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 214
++VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG
Sbjct: 9 SSVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 188
Query: 215 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIH 274
HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLP VQPFQEGTYLATIH
Sbjct: 189 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIH 368
Query: 275 LPYLQGQVTLELAVY 289
LPYLQGQVTLELAVY
Sbjct: 369 LPYLQGQVTLELAVY 413
>emb|Z97184.1|HSF0811 Human DNA sequence from clone ICRF6c-CF0811 on chromosome 6. Contains
the 3' end of the DAXX gene for death-associated protein 6
(Fas-binding protein), the ZNF297 gene for zinc finger
protein 297 (BING1), the TAPBP gene for TAP-binding
protein (tapasin>
Length = 40127
Score = 281 bits (718), Expect = 1e-73
Identities = 132/135 (97%), Positives = 134/135 (98%)
Frame = +3
Query: 155 ATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 214
++VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG
Sbjct: 15687 SSVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 15866
Query: 215 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIH 274
HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLP VQPFQEGTYLATIH
Sbjct: 15867 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIH 16046
Query: 275 LPYLQGQVTLELAVY 289
LPYLQGQVTLELAVY
Sbjct: 16047 LPYLQGQVTLELAVY 16091
Score = 241 bits (614), Expect(2) = 1e-62
Identities = 115/117 (98%), Positives = 116/117 (98%)
Frame = +2
Query: 290 KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 349
+PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL
Sbjct: 16442 EPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 16621
Query: 350 SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAG S
Sbjct: 16622 SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKS 16792
Score = 128 bits (322), Expect = 1e-27
Identities = 61/63 (96%), Positives = 62/63 (97%), Gaps = 1/63 (1%)
Frame = +1
Query: 67 SVH-DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM 125
S+H DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM
Sbjct: 7591 SLHSDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM 7770
Query: 126 VSI 128
VSI
Sbjct: 7771 VSI 7779
Score = 52.8 bits (125), Expect = 7e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRPGA 44
PAVIECWFVEDASGKGLAKRPGA
Sbjct: 7243 PAVIECWFVEDASGKGLAKRPGA 7311
Score = 25.4 bits (54), Expect(2) = 1e-62
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 404 GLSGPSLEDSV 414
GLSGPSLEDSV
Sbjct: 16863 GLSGPSLEDSV 16895
>emb|AL662820.6|AL662820 Human DNA sequence from clone XXbac-185D15 on chromosome 6, complete
sequence [Homo sapiens]
Length = 78635
Score = 281 bits (718), Expect = 1e-73
Identities = 132/135 (97%), Positives = 134/135 (98%)
Frame = -3
Query: 155 ATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 214
++VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG
Sbjct: 34398 SSVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG 34219
Query: 215 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIH 274
HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLP VQPFQEGTYLATIH
Sbjct: 34218 HLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIH 34039
Query: 275 LPYLQGQVTLELAVY 289
LPYLQGQVTLELAVY
Sbjct: 34038 LPYLQGQVTLELAVY 33994
Score = 241 bits (614), Expect(2) = 1e-62
Identities = 115/117 (98%), Positives = 116/117 (98%)
Frame = -2
Query: 290 KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 349
+PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL
Sbjct: 33643 EPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 33464
Query: 350 SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAG S
Sbjct: 33463 SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKS 33293
Score = 128 bits (322), Expect = 1e-27
Identities = 61/63 (96%), Positives = 62/63 (97%), Gaps = 1/63 (1%)
Frame = -1
Query: 67 SVH-DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM 125
S+H DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM
Sbjct: 42494 SLHSDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM 42315
Query: 126 VSI 128
VSI
Sbjct: 42314 VSI 42306
Score = 52.8 bits (125), Expect = 7e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -1
Query: 22 PAVIECWFVEDASGKGLAKRPGA 44
PAVIECWFVEDASGKGLAKRPGA
Sbjct: 42842 PAVIECWFVEDASGKGLAKRPGA 42774
Score = 25.4 bits (54), Expect(2) = 1e-62
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 404 GLSGPSLEDSV 414
GLSGPSLEDSV
Sbjct: 33222 GLSGPSLEDSV 33190
>dbj|AK003013.1|AK003013 Mus musculus adult male brain cDNA, RIKEN full-length enriched
library, clone:0710007E18:TAP binding protein, full
insert sequence
Length = 481
Score = 263 bits (673), Expect = 2e-68
Identities = 121/160 (75%), Positives = 135/160 (83%)
Frame = -2
Query: 171 RLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPA 230
+LG+DA+LDL FAY P E + SL GPPPFGLEWRRQH GKGHLLLAATPGL G+MP
Sbjct: 480 QLGKDAVLDLRFAYAPSALEGSPSLDAGPPPFGLEWRRQHRGKGHLLLAATPGLAGRMPP 301
Query: 231 AQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK 290
AQE A AFAAWDDDEPWGPWTGNGTFWLP V+P QEG YLAT+HLPYLQGQV+LEL V+K
Sbjct: 300 AQEKATAFAAWDDDEPWGPWTGNGTFWLPAVKPSQEGVYLATVHLPYLQGQVSLELTVHK 121
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEW 330
P+VSL PA + AAPGEAPPELLCL SHF+P+ GLEV+W
Sbjct: 120 APRVSLTPAPVVWAAPGEAPPELLCLASHFFPAEGLEVKW 1
>gb|AF110520.1|MMHC425O18 Mus musculus major histocompatibility complex region NG27, NG28, RPS28,
NADH oxidoreductase, NG29, KIFC1, Fas-binding protein,
BING1, tapasin, RalGDS-like, KE2, BING4, beta
1,3-galactosyl transferase, and RPS18 genes, complete cds;
Sacm21 gene, partial>
Length = 213245
Score = 227 bits (578), Expect = 2e-57
Identities = 105/133 (78%), Positives = 114/133 (84%)
Frame = +1
Query: 157 VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHL 216
VVLTVLTH PAPRV+LG+DA+LDL FAY P E + SL GPPPFGLEWRRQH GKGHL
Sbjct: 174172 VVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPPFGLEWRRQHRGKGHL 174351
Query: 217 LLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLP 276
LLAATPGL G+MP AQE A AFAAWDDDEPWGPWTGNGTFWLP V+P QEG YLAT+HLP
Sbjct: 174352 LLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAVKPSQEGVYLATVHLP 174531
Query: 277 YLQGQVTLELAVY 289
YLQGQV+LEL V+
Sbjct: 174532 YLQGQVSLELTVH 174570
Score = 185 bits (470), Expect = 7e-45
Identities = 92/159 (57%), Positives = 108/159 (67%), Gaps = 26/159 (16%)
Frame = +2
Query: 282 VTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQ 341
VT + + P+VSL PA + AAPGEAPPELLCL SHF+P+ GLEV+WELRGGPGG S+
Sbjct: 174746 VTFPILSSEAPRVSLTPAPVVWAAPGEAPPELLCLASHFFPAEGLEVKWELRGGPGGSSR 174925
Query: 342 KAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLE 401
K EG+ WLS +RHHSDGSVS SGHLQ PPVT +QHG Y CR++H SLPASGRSA+VTLE
Sbjct: 174926 KVEGKTWLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYVCRVYHSSLPASGRSADVTLE 175105
Query: 402 VAG--------------------------LSGPSLEDSV 414
VAG SGPS+ED +
Sbjct: 175106 VAGNRLGNIRTRVGLRKHQTHAHRFRLPGFSGPSIEDGI 175222
Score = 105 bits (262), Expect = 9e-21
Identities = 51/87 (58%), Positives = 55/87 (62%)
Frame = +2
Query: 70 DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIX 129
DPAG L AAFRRYP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS+
Sbjct: 169016 DPAGMLLAAFRRYPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVS 169195
Query: 130 XXXXXXXXXXXXXXXXXXXXXXITMAT 156
ITMAT
Sbjct: 169196 STLFSLSSLLRPQPEPLREPVVITMAT 169276
Score = 38.9 bits (89), Expect = 0.99
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 22 PAVIECWFVEDASGKGLAKRP 42
P IECWFVEDA G GL+K+P
Sbjct: 168674 PEAIECWFVEDAGGGGLSKKP 168736
>gb|AF100956.1|AF100956 Mus musculus major histocompatibility locus class II region;
Fas-binding protein Daxx (DAXX) gene, partial cds; Bing1
(BING1), tapasin (tapasin), RalGDS-like factor (RLF), KE2
(KE2), BING4 (BING4), beta1, 3-galactosyl transferase
(beta1,3-galactosyl tr>
Length = 273800
Score = 227 bits (578), Expect = 2e-57
Identities = 105/133 (78%), Positives = 114/133 (84%)
Frame = +1
Query: 157 VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHL 216
VVLTVLTH PAPRV+LG+DA+LDL FAY P E + SL GPPPFGLEWRRQH GKGHL
Sbjct: 11887 VVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPPFGLEWRRQHRGKGHL 12066
Query: 217 LLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLP 276
LLAATPGL G+MP AQE A AFAAWDDDEPWGPWTGNGTFWLP V+P QEG YLAT+HLP
Sbjct: 12067 LLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAVKPSQEGVYLATVHLP 12246
Query: 277 YLQGQVTLELAVY 289
YLQGQV+LEL V+
Sbjct: 12247 YLQGQVSLELTVH 12285
Score = 185 bits (470), Expect = 7e-45
Identities = 92/159 (57%), Positives = 108/159 (67%), Gaps = 26/159 (16%)
Frame = +2
Query: 282 VTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQ 341
VT + + P+VSL PA + AAPGEAPPELLCL SHF+P+ GLEV+WELRGGPGG S+
Sbjct: 12461 VTFPILSSEAPRVSLTPAPVVWAAPGEAPPELLCLASHFFPAEGLEVKWELRGGPGGSSR 12640
Query: 342 KAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLE 401
K EG+ WLS +RHHSDGSVS SGHLQ PPVT +QHG Y CR++H SLPASGRSA+VTLE
Sbjct: 12641 KVEGKTWLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYVCRVYHSSLPASGRSADVTLE 12820
Query: 402 VAG--------------------------LSGPSLEDSV 414
VAG SGPS+ED +
Sbjct: 12821 VAGNRLGNIRTRVGLRKHQTHAHRFRLPGFSGPSIEDGI 12937
Score = 105 bits (262), Expect = 9e-21
Identities = 51/87 (58%), Positives = 55/87 (62%)
Frame = +1
Query: 70 DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIX 129
DPAG L AAFRRYP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS+
Sbjct: 6730 DPAGMLLAAFRRYPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVS 6909
Query: 130 XXXXXXXXXXXXXXXXXXXXXXITMAT 156
ITMAT
Sbjct: 6910 STLFSLSSLLRPQPEPLREPVVITMAT 6990
Score = 38.9 bits (89), Expect = 0.99
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 22 PAVIECWFVEDASGKGLAKRP 42
P IECWFVEDA G GL+K+P
Sbjct: 6388 PEAIECWFVEDAGGGGLSKKP 6450
>emb|AJ316612.1|MMU316612 Mus musculus gene for tapasin (TAP associated glycoprotein), exons
1-8
Length = 10600
Score = 227 bits (578), Expect = 2e-57
Identities = 105/133 (78%), Positives = 114/133 (84%)
Frame = +1
Query: 157 VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHL 216
VVLTVLTH PAPRV+LG+DA+LDL FAY P E + SL GPPPFGLEWRRQH GKGHL
Sbjct: 7732 VVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPPFGLEWRRQHRGKGHL 7911
Query: 217 LLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLP 276
LLAATPGL G+MP AQE A AFAAWDDDEPWGPWTGNGTFWLP V+P QEG YLAT+HLP
Sbjct: 7912 LLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAVKPSQEGVYLATVHLP 8091
Query: 277 YLQGQVTLELAVY 289
YLQGQV+LEL V+
Sbjct: 8092 YLQGQVSLELTVH 8130
Score = 185 bits (470), Expect = 7e-45
Identities = 92/159 (57%), Positives = 108/159 (67%), Gaps = 26/159 (16%)
Frame = +2
Query: 282 VTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQ 341
VT + + P+VSL PA + AAPGEAPPELLCL SHF+P+ GLEV+WELRGGPGG S+
Sbjct: 8306 VTFPILSSEAPRVSLTPAPVVWAAPGEAPPELLCLASHFFPAEGLEVKWELRGGPGGSSR 8485
Query: 342 KAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLE 401
K EG+ WLS +RHHSDGSVS SGHLQ PPVT +QHG Y CR++H SLPASGRSA+VTLE
Sbjct: 8486 KVEGKTWLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYVCRVYHSSLPASGRSADVTLE 8665
Query: 402 VAG--------------------------LSGPSLEDSV 414
VAG SGPS+ED +
Sbjct: 8666 VAGNRLGNIRTRVGLRKHQTHAHRFRLPGFSGPSIEDGI 8782
Score = 105 bits (262), Expect = 9e-21
Identities = 51/87 (58%), Positives = 55/87 (62%)
Frame = +2
Query: 70 DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIX 129
DPAG L AAFRRYP GA APHCEMSRF+P PASAKWA L+P QNCPRALDG WL+VS+
Sbjct: 2576 DPAGMLLAAFRRYPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVS 2755
Query: 130 XXXXXXXXXXXXXXXXXXXXXXITMAT 156
ITMAT
Sbjct: 2756 STLFSLSSLLRPQPEPLREPVVITMAT 2836
Score = 38.9 bits (89), Expect = 0.99
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 22 PAVIECWFVEDASGKGLAKRP 42
P IECWFVEDA G GL+K+P
Sbjct: 2234 PEAIECWFVEDAGGGGLSKKP 2296
>gb|AF137538.1|AF137538 Danio rerio clone ODare-Tpsn-C5o tapasin mRNA, complete cds
Length = 1695
Score = 134 bits (338), Expect = 1e-29
Identities = 114/405 (28%), Positives = 168/405 (41%), Gaps = 14/405 (3%)
Frame = +3
Query: 24 VIECWFVEDASGKG------LAKRPGAXXXXXXXXXXXXXXXXXXXXXXS------VHDP 71
V+ECWFV++ G G +++ S V DP
Sbjct: 168 VLECWFVQEKPGHGGGLSTPMSQEKSLIFIRTEAYSEEIKTELHPPADISSSRVYYVTDP 347
Query: 72 AGALQAAFRRYPRGAP-APHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSIXX 130
AG +A P+G+ P CE++ F+P + +WAS LT + P L W V+
Sbjct: 348 AGTFCSAALNPPKGSVNKPKCEINPFMPHASMVRWASALTDSAQSPVYLQADWFSVAAQG 527
Query: 131 XXXXXXXXXXXXXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSE 190
V+L+V + TP R RLG+ LLD F ++ P+S
Sbjct: 528 LDDQLTLSNIMRAPSASKE-----PKVILSVSSKTPVVRCRLGEPVLLDCGF-WIDPSSP 689
Query: 191 AASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPW 250
S F +EWR Q G+G L+LA G N + E D
Sbjct: 690 LHGS------GFSIEWRYQFRGEGRLVLAYD-GKNDRFAETSESGAEM-----DITGLYQ 833
Query: 251 TGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAP 310
TGN + L Q GTY+ T++LP+L QV ++L + +PP +S++P+ L PG+
Sbjct: 834 TGNASLILEESQVRHSGTYICTVYLPHLLAQVAVDLEIVEPPSLSILPSPLPLLVPGQV- 1010
Query: 311 PELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPP 370
+ C S F P L++ WE G G + GQ ++ R SDG+ S S L+
Sbjct: 1011LSVQCEASGFAPH-TLDLGWEFTGADG--KSLSLGQGSVTGHRRASDGTFSQSSRLELDS 1181
Query: 371 VTTE-QHGARYACRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSV 414
G +C H R A L V G++ PS+EDS+
Sbjct: 1182TKLRLARGGEISCVAKH---DGGTRRASAALNVIGVAAPSIEDSM 1307
>emb|AJ005071.1|GGAJ5071 Gallus gallus mRNA for tapasin protein, L8.4
Length = 1045
Score = 132 bits (332), Expect = 7e-29
Identities = 105/318 (33%), Positives = 135/318 (42%), Gaps = 3/318 (0%)
Frame = +1
Query: 98 PLPASAKWASGLTPAQNCPRALDGAWLMVSIXXXXXXXXXXXXXXXXXXXXXXXITMATV 157
P S W+ L P P G W + ++ A V
Sbjct: 16 PQTGSDPWSRPLHPDARSPPTAGGQWWVAAVGTPQYGVTALLQGGMGTEGTIT----AAV 183
Query: 158 VLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLL 217
L VLTHTP R R+G L +FA PP+S F LEWR Q+ G G +L
Sbjct: 184 ALAVLTHTPTLRARVGSPIHLHCAFA-APPSS------------FVLEWRHQNRGAGRVL 324
Query: 218 LAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPY 277
LA + P A GA D G T L R P EGTY+ ++ LP+
Sbjct: 325 LAYDSS-TARAPRAHPGAELLLGTRD----GDGVTAVTLRLARPSPGDEGTYICSVFLPH 489
Query: 278 LQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPG 337
Q L+L V++PPKV+L P L APG + EL C VS FYP + V W+ R G
Sbjct: 490 GHTQTVLQLHVFEPPKVTLSPKNLV-VAPGTS-AELRCHVSGFYPL-DVTVTWQRRAGGS 660
Query: 338 GRSQKAEG---QRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGR 394
G SQ W S R +DG+ S + + P + HG Y+C + H +L A
Sbjct: 661 GTSQSPRDTVMDSWTSGHRQAADGTYSRTAAARLIPARPQHHGDIYSCVVTHTAL-AKPM 837
Query: 395 SAEVTLEVAGLSGPSLED 412
V L +AG GP LED
Sbjct: 838 RVSVRLLLAGTEGPHLED 891
>emb|Z97183.1|HSICB2046 Human DNA sequence from clone ICRF6c-CB2046 on chromosome 6. Contains a
myosin regulatory light chain 2 pseudogene, the DAXX gene
for death-associated protein 6 (Fas-binding protein), the
ZNF297 gene for zinc finger protein 297 (BING1), the 5'
end of t>
Length = 39872
Score = 128 bits (322), Expect = 1e-27
Identities = 61/63 (96%), Positives = 62/63 (97%), Gaps = 1/63 (1%)
Frame = +2
Query: 67 SVH-DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM 125
S+H DPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM
Sbjct: 37475 SLHSDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLM 37654
Query: 126 VSI 128
VSI
Sbjct: 37655 VSI 37663
Score = 52.8 bits (125), Expect = 7e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +2
Query: 22 PAVIECWFVEDASGKGLAKRPGA 44
PAVIECWFVEDASGKGLAKRPGA
Sbjct: 37127 PAVIECWFVEDASGKGLAKRPGA 37195
>gb|AF137537.1|AF137537 Danio rerio clone O42-M3-2GO tapasin mRNA, partial cds
Length = 687
Score = 91.7 bits (226), Expect = 1e-16
Identities = 69/229 (30%), Positives = 100/229 (43%), Gaps = 1/229 (0%)
Frame = +1
Query: 68 VHDPAGALQAAFRRYPRGAP-APHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMV 126
V +PAG +A P+G+ P CE++ F+P + +WAS LT + P L W V
Sbjct: 46 VTNPAGTFCSAALNPPKGSVNKPKCEINPFMPHASMVRWASALTDSAQSPVYLQADWFSV 225
Query: 127 SIXXXXXXXXXXXXXXXXXXXXXXXITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMP 186
+ V+L+V + TP R RLG+ LLD F ++
Sbjct: 226 A-----AQGLDDQLTLSNIMRAPSAFKEPKVILSVSSKTPVVRCRLGEPVLLDCGF-WID 387
Query: 187 PTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEP 246
P+S S F +EWR Q G+G L+LA G N + E D
Sbjct: 388 PSSPLHGS------GFSIEWRYQFRGEGRLVLAYD-GKNDRFAETSESGAEM-----DIT 531
Query: 247 WGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVS 295
TGN + L Q GTY+ T++LP+L QV ++L + +PP S
Sbjct: 532 GLYQTGNASLILEESQVRNSGTYICTVYLPHLLAQVAVDLEIVEPPTYS 678
>dbj|AB073377.1|AB073377 Oryzias latipes DNA, MHC Class I Region, complete cds, section 2/2
Length = 209128
Score = 59.3 bits (142), Expect(2) = 3e-13
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Frame = +3
Query: 152 ITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMP--PTSEAASSLAPGPPPFGLEWRRQ 209
+++++V+L++ + T + RLGQ LD SF P P SE F +EWR Q
Sbjct: 146628 LSVSSVILSLTSTTMTAQARLGQPFTLDCSFWADPLSPLSETG---------FAVEWRYQ 146780
Query: 210 HLGKGHLLLAATPGLNGQMPAAQEGAVA-FAAWDDDEPWGPWTGNGTFWLPRVQPFQEGT 268
G G L+LA + +EGA F A + GN + L + GT
Sbjct: 146781 FRGDGRLVLAYDGKTDRLADTLEEGATLDFEALHE-------RGNASLILQETKVQHSGT 146939
Query: 269 YLATIHLPYLQGQVTLELAV 288
Y+ ++ LPYL QV +EL V
Sbjct: 146940 YICSVFLPYLLAQVAMELEV 146999
Score = 41.2 bits (95), Expect(2) = 3e-13
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Frame = +1
Query: 290 KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 349
+PP +S+ P+ L A PG+ + C S F P +++ WE RG G ++ G +
Sbjct: 147097 EPPSLSIHPSPLPLAVPGQV-LNIQCEASGFVPL-PVDLSWEFRGADG--KSRSLGSGSM 147264
Query: 350 SALRHHSDGSVSLSGHLQPPPVTTE-QHGARYACRIHHPSLPASGRSAEVTLEVAG 404
S R DG+ S S LQ + G +C H R A VTL V G
Sbjct: 147265 SGHRQAWDGTYSQSTRLQLDTSKLDLGRGGEISCVAVH---RGGTRRASVTLSVIG 147423
Score = 36.2 bits (82), Expect = 6.4
Identities = 21/59 (35%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
Frame = +1
Query: 70 DPAGALQAAFRRYPRGA-PAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVS 127
DPA L PRG+ P CE++ F+P P+S W LT P L W S
Sbjct: 146320 DPAETLCHRSFNPPRGSIKKPQCEVNPFLPQPSSLAWVRSLTENAFSPVYLQADWFSAS 146496
>emb|AJ005072.1|GGAJ5072 Gallus gallus mRNA for Tapasin, T8.4
Length = 866
Score = 74.3 bits (181), Expect = 2e-11
Identities = 59/169 (34%), Positives = 77/169 (44%), Gaps = 5/169 (2%)
Frame = +2
Query: 249 PWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLE--LAVYKPPKVSLMPATLARAAP 306
P T G +W+ V Q G LQG + E + +PPKV+L P L AP
Sbjct: 236 PPTAGGQWWVAAVGTPQYGV------TALLQGGMGTEGTITAAEPPKVTLSPKNLV-VAP 394
Query: 307 GEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEG---QRWLSALRHHSDGSVSLS 363
G + EL C VS FYP + V W+ R G G SQ W S R +DG+ S +
Sbjct: 395 GTSA-ELRCHVSGFYPLD-VTVTWQRRAGGSGTSQSPRDTVMDSWTSGHRQAADGTYSRT 568
Query: 364 GHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLSGPSLED 412
+ P + HG Y+C + H +L A V L +AG GP LED
Sbjct: 569 AAARLIPARPQHHGDIYSCVVTHTAL-AKPMRVSVRLLLAGTEGPHLED 712
>gb|BC017613.1|BC017613 Mus musculus, clone MGC:27679 IMAGE:4912570, mRNA, complete cds
Length = 2086
Score = 73.2 bits (178), Expect = 5e-11
Identities = 62/196 (31%), Positives = 91/196 (45%)
Frame = +3
Query: 194 SLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGN 253
S+AP G+EWR QH G G L+ + GQ A ++GA + +E GN
Sbjct: 921 SMAPDLDLTGVEWRLQHKGSGQLVYSWK---TGQGQAKRKGATL----EPEELLR--AGN 1073
Query: 254 GTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPEL 313
+ LP + EGTY+ I Q Q + L + PPKV L A + P L
Sbjct: 1074 ASLTLPNLTLKDEGTYICQISTSLYQAQQIMPLNILAPPKVQL------HLANKDPLPSL 1235
Query: 314 LCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTT 373
+C ++ +YP + V W +R GG + G + S+LR + G+ S+S + P T
Sbjct: 1236 VCSIAGYYPL-DVGVTW-IREELGGIPAQVSGASF-SSLRQSTMGTYSISSTVMADPGPT 1406
Query: 374 EQHGARYACRIHHPSL 389
GA Y C++ H SL
Sbjct: 1407 ---GATYTCQVAHVSL 1445
>gb|BC015017.1|BC015017 Homo sapiens, clone MGC:8836 IMAGE:3916213, mRNA, complete cds
Length = 1751
Score = 72.0 bits (175), Expect = 1e-10
Identities = 70/233 (30%), Positives = 100/233 (42%)
Frame = +1
Query: 157 VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHL 216
V V+T T + LG A LD F S+APG +EWR QH G+G L
Sbjct: 742 VEFQVMTQTQSLSFLLGSSASLDCGF-----------SMAPGLDLISVEWRLQHKGRGQL 888
Query: 217 LLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLP 276
+ + T GQ A ++GA A + + LP + EGTY+ I
Sbjct: 889 VYSWTA---GQGQAVRKGATLEPAQLG------MARDASLTLPGLTIQDEGTYICQITTS 1041
Query: 277 YLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP 336
+ Q ++L + PKV L A A P L+C ++ +YP + V W R
Sbjct: 1042LYRAQQIIQLNIQASPKVRLSLANEALL------PTLICDIAGYYPL-DVVVTW-TREEL 1197
Query: 337 GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
GG + G + S+LR G+ S+S L P + GA Y C++ H SL
Sbjct: 1198GGSPAQVSGASF-SSLRQSVAGTYSISSSLTAEPGSA---GATYTCQVTHISL 1344
>ref|NM_018009.1| Homo sapiens hypothetical protein FLJ10143 (FLJ10143), mRNA
Length = 1694
Score = 72.0 bits (175), Expect = 1e-10
Identities = 70/233 (30%), Positives = 100/233 (42%)
Frame = +2
Query: 157 VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHL 216
V V+T T + LG A LD F S+APG +EWR QH G+G L
Sbjct: 707 VEFQVMTQTQSLSFLLGSSASLDCGF-----------SMAPGLDLISVEWRLQHKGRGQL 853
Query: 217 LLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLP 276
+ + T GQ A ++GA A + + LP + EGTY+ I
Sbjct: 854 VYSWTA---GQGQAVRKGATLEPAQLG------MARDASLTLPGLTIQDEGTYICQITTS 1006
Query: 277 YLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP 336
+ Q ++L + PKV L A A P L+C ++ +YP + V W R
Sbjct: 1007LYRAQQIIQLNIQASPKVRLSLANEALL------PTLICDIAGYYPL-DVVVTW-TREEL 1162
Query: 337 GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
GG + G + S+LR G+ S+S L P + GA Y C++ H SL
Sbjct: 1163GGSPAQVSGASF-SSLRQSVAGTYSISSSLTAEPGSA---GATYTCQVTHISL 1309
>dbj|AK001005.1|AK001005 Homo sapiens cDNA FLJ10143 fis, clone HEMBA1003281, weakly similar
to POLIOVIRUS RECEPTOR PRECURSOR
Length = 1694
Score = 72.0 bits (175), Expect = 1e-10
Identities = 70/233 (30%), Positives = 100/233 (42%)
Frame = +2
Query: 157 VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHL 216
V V+T T + LG A LD F S+APG +EWR QH G+G L
Sbjct: 707 VEFQVMTQTQSLSFLLGSSASLDCGF-----------SMAPGLDLISVEWRLQHKGRGQL 853
Query: 217 LLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLP 276
+ + T GQ A ++GA A + + LP + EGTY+ I
Sbjct: 854 VYSWTA---GQGQAVRKGATLEPAQLG------MARDASLTLPGLTIQDEGTYICQITTS 1006
Query: 277 YLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP 336
+ Q ++L + PKV L A A P L+C ++ +YP + V W R
Sbjct: 1007LYRAQQIIQLNIQASPKVRLSLANEALL------PTLICDIAGYYPL-DVVVTW-TREEL 1162
Query: 337 GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
GG + G + S+LR G+ S+S L P + GA Y C++ H SL
Sbjct: 1163GGSPAQVSGASF-SSLRQSVAGTYSISSSLTAEPGSA---GATYTCQVTHISL 1309
>dbj|AK002056.2|AK002056 Homo sapiens cDNA FLJ11194 fis, clone PLACE1007632, weakly similar
to POLIOVIRUS RECEPTOR PRECURSOR
Length = 1702
Score = 72.0 bits (175), Expect = 1e-10
Identities = 70/233 (30%), Positives = 100/233 (42%)
Frame = +1
Query: 157 VVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHL 216
V V+T T + LG A LD F S+APG +EWR QH G+G L
Sbjct: 691 VEFQVMTQTQSLSFLLGSSASLDCGF-----------SMAPGLDLISVEWRLQHKGRGQL 837
Query: 217 LLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLP 276
+ + T GQ A ++GA A + + LP + EGTY+ I
Sbjct: 838 VYSWTA---GQGQAVRKGATLEPAQLG------MARDASLTLPGLTIQDEGTYICQITTS 990
Query: 277 YLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP 336
+ Q ++L + PKV L A A P L+C ++ +YP + V W R
Sbjct: 991 LYRAQQIIQLNIQASPKVRLSLANEALL------PTLICDIAGYYPL-DVVVTW-TREEL 1146
Query: 337 GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
GG + G + S+LR G+ S+S L P + GA Y C++ H SL
Sbjct: 1147GGSPAQVSGASF-SSLRQSVAGTYSISSSLTAEPGSA---GATYTCQVTHISL 1293
>emb|AJ004999.1|GGAJ4999 Gallus gallus tapasin gene, complete CDS
Length = 4710
Score = 64.7 bits (156), Expect = 2e-08
Identities = 49/134 (36%), Positives = 61/134 (44%)
Frame = +2
Query: 156 TVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGH 215
TV L VLTHTP R R+G L +FA PP+S F LEWR Q+ G G
Sbjct: 2813 TVALAVLTHTPTLRARVGSPIHLHCAFA-APPSS------------FVLEWRHQNRGAGR 2953
Query: 216 LLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHL 275
+LLA + P A GA D G T L R P EGTY+ ++ L
Sbjct: 2954 VLLAYDSS-TARAPRAHPGAELLLGTRD----GDGVTAVTLRLARPSPGDEGTYICSVFL 3118
Query: 276 PYLQGQVTLELAVY 289
P+ Q L+L V+
Sbjct: 3119 PHGHTQTVLQLHVF 3160
Score = 60.5 bits (145), Expect = 3e-07
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Frame = +2
Query: 290 KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEG---Q 346
+PPKV+L P L APG + EL C VS FYP + V W+ R G G SQ
Sbjct: 3530 EPPKVTLSPKNLV-VAPGTSA-ELRCHVSGFYPLD-VTVTWQRRAGGSGTSQSPRDTVMD 3700
Query: 347 RWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
W S R +DG+ S + + P + HG Y+C + H +L A V L +AG
Sbjct: 3701 SWTSGHRQAADGTYSRTAAARLIPARPQHHGDIYSCVVTHTAL-AKPMRVSVRLLLAGEG 3877
Query: 407 G 407
G
Sbjct: 3878 G 3880
>emb|AL023516.1|GGBLOCUS Gallus gallus (chicken) DNA sequence from a contig of cosmids cB12,
c4.5 and cBF23. Contains two Butyrophilin like genes, a
gene coding for two isoforms of a B locus G (Zipper
protein) like protein, genes coding for B locus Lectin
like Natural Killer c>
Length = 92863
Score = 64.3 bits (155), Expect = 2e-08
Identities = 49/134 (36%), Positives = 61/134 (44%)
Frame = -3
Query: 156 TVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGH 215
TV L VLTHTP R R+G L +FA PP+S F LEWR Q+ G G
Sbjct: 37280 TVALAVLTHTPTLRARVGSPIHLHCAFA-APPSS------------FVLEWRHQNRGAGR 37140
Query: 216 LLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHL 275
+LLA + P A GA D G T L R P EGTY+ ++ L
Sbjct: 37139 VLLAYDSS-TARAPRATPGAELLLGTRD----GDGVTAVTLRLARPSPGDEGTYICSVFL 36975
Query: 276 PYLQGQVTLELAVY 289
P+ Q L+L V+
Sbjct: 36974 PHGHTQTVLQLHVF 36933
Score = 60.5 bits (145), Expect = 3e-07
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Frame = -1
Query: 290 KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEG---Q 346
+PPKV+L P L APG + EL C VS FYP + V W+ R G G SQ
Sbjct: 36562 EPPKVTLSPKNLV-VAPGTSA-ELRCHVSGFYPLD-VTVTWQRRAGGSGTSQSPRDTVMD 36392
Query: 347 RWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
W S R +DG+ S + + P + HG Y+C + H +L A V L +AG
Sbjct: 36391 SWTSGHRQAADGTYSRTAAARLIPARPQHHGDIYSCVVTHTAL-AKPMRVSVRLLLAGEG 36215
Query: 407 G 407
G
Sbjct: 36214 G 36212
>gb|AC005840.2|AC005840 Homo sapiens complete sequence of a PAC clone RP1-102E24 containing
SYB1, CD27, and SCNN1A genes
Length = 140026
Score = 45.1 bits (105), Expect = 0.014
Identities = 39/133 (29%), Positives = 56/133 (41%)
Frame = -2
Query: 156 TVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGH 215
TV V+T T + LG A LD F S+APG +EWR QH G+G
Sbjct: 27342 TVEFQVMTQTQSLSFLLGSSASLDCGF-----------SMAPGLDLISVEWRLQHKGRGQ 27196
Query: 216 LLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHL 275
L+ + T GQ A ++GA A + + LP + EGTY+ I
Sbjct: 27195 LVYSWTA---GQGQAVRKGATLEPAQLG------MARDASLTLPGLTIQDEGTYICQITT 27043
Query: 276 PYLQGQVTLELAV 288
+ Q ++L +
Sbjct: 27042 SLYRAQQIIQLNI 27004
>gb|AC006064.9|AC006064 Homo sapiens 12p13.3 PAC RPCI5-940J5 (Roswell Park Cancer Institute
Human PAC Library) complete sequence
Length = 172570
Score = 45.1 bits (105), Expect = 0.014
Identities = 39/133 (29%), Positives = 56/133 (41%)
Frame = +1
Query: 156 TVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGH 215
TV V+T T + LG A LD F S+APG +EWR QH G+G
Sbjct: 14518 TVEFQVMTQTQSLSFLLGSSASLDCGF-----------SMAPGLDLISVEWRLQHKGRGQ 14664
Query: 216 LLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHL 275
L+ + T GQ A ++GA A + + LP + EGTY+ I
Sbjct: 14665 LVYSWTA---GQGQAVRKGATLEPAQLG------MARDASLTLPGLTIQDEGTYICQITT 14817
Query: 276 PYLQGQVTLELAV 288
+ Q ++L +
Sbjct: 14818 SLYRAQQIIQLNI 14856
>gb|AF084934.1|AF084934 Rattus norvegicus Class II MHC RT1.D(u) beta chain precursor
(RT1.D(u)) mRNA, complete cds
Length = 1120
Score = 43.1 bits (100), Expect = 0.053
Identities = 36/104 (34%), Positives = 49/104 (46%), Gaps = 1/104 (0%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P E L+C VS FYP G +EV W G K E +S
Sbjct: 374 PKVTVYPS---KTQPLEHHNLLVCSVSDFYP-GSIEVRWFRNG-------KEEKDGLVST 520
Query: 352 -LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGR 394
L + D + L L+ P Q G Y C++ HPSLP+ R
Sbjct: 521 GLIRNGDWTFQLLVMLETVP----QGGEVYTCQVEHPSLPSPVR 640
>gb|AF084932.1|AF084932 Rattus norvegicus Class II MHC RT1.D(a) beta chain precursor
(RT1.D(a)) mRNA, complete cds
Length = 1100
Score = 43.1 bits (100), Expect = 0.053
Identities = 36/104 (34%), Positives = 49/104 (46%), Gaps = 1/104 (0%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P E L+C VS FYP G +EV W G K E +S
Sbjct: 365 PKVTVYPS---KTQPLEHHNLLVCSVSDFYP-GSIEVRWFRNG-------KEEKDGLVST 511
Query: 352 -LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGR 394
L + D + L L+ P Q G Y C++ HPSLP+ R
Sbjct: 512 GLIRNGDWTFQLLVMLETVP----QGGEVYTCQVEHPSLPSPVR 631
>gb|M12382.1|RATMHEBC Rat MHC RT1 class II E-beta chain mRNA, 3' end
Length = 829
Score = 43.1 bits (100), Expect = 0.053
Identities = 36/104 (34%), Positives = 49/104 (46%), Gaps = 1/104 (0%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P E L+C VS FYP G +EV W G K E +S
Sbjct: 313 PKVTVYPS---KTQPLEHHNLLVCSVSDFYP-GSIEVRWFRNG-------KEEKDGLVST 459
Query: 352 -LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGR 394
L + D + L L+ P Q G Y C++ HPSLP+ R
Sbjct: 460 GLIRNGDWTFQLLVMLETVP----QGGEVYTCQVEHPSLPSPVR 579
>emb|X53054.1|RNRTD1 Rat mRNA for RT1.D beta chain
Length = 1197
Score = 42.7 bits (99), Expect = 0.069
Identities = 34/103 (33%), Positives = 50/103 (48%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P E L+C VS FYP G +EV W G ++ +G
Sbjct: 385 PKVTVYPS---KTQPLEHHNLLVCSVSDFYP-GSVEVRWFRNG-----EEEKDGLVSTGL 537
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGR 394
+R+ D + L L+ P Q G Y C++ HPSLP+ R
Sbjct: 538 IRN-GDWTFQLLVMLETVP----QGGEVYTCQVEHPSLPSPVR 651
>emb|AL139158.11|AL139158 Human DNA sequence from clone RP5-884C9 on chromosome 1p34.1-35.3,
complete sequence [Homo sapiens]
Length = 115614
Score = 42.4 bits (98), Expect = 0.090
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +1
Query: 204 LEWRRQHLGKGHLLLAAT--PGLNGQMPAAQEGAVAFA-AWDDDEPWGPWTGNGTF--WL 258
L+ R++ LG+GH +L A PG Q P+ +G++ A PWGPW G+GT+ W
Sbjct: 40267 LQTRQRGLGQGHTMLWAEEDPGPGVQFPSWAQGSILSPIASSLPSPWGPWLGDGTWHLWA 40446
Query: 259 PRVQPFQEG 267
R+ ++G
Sbjct: 40447 GRLCLLRDG 40473
>gb|AF277661.1|AF277661 Caiman crocodilus MHC class II beta chain (hcIIbeta) gene, complete
cds
Length = 7595
Score = 41.6 bits (96), Expect = 0.15
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Frame = +2
Query: 286 LAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEG 345
L++ PKV + P A P L+C V+ FYP GG+EV+W G Q+
Sbjct: 3299 LSLSVKPKVKISPTKSGAQAH---PDTLVCSVTGFYP-GGIEVKWLKNG------QEQTA 3448
Query: 346 QRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPAS-----GRSAEVTL 400
+ L + D + + L+ P + G Y C++ H SLP GRS E+
Sbjct: 3449 GVVSTELMQNGDWTFQILVMLEMTP----RSGDVYTCQVEHSSLPGPVAVLWGRSRELGA 3616
Query: 401 EVAGLSGPSL 410
L G L
Sbjct: 3617 APEMLEGTGL 3646
>dbj|D86616.1|D86616 Feline herpesvirus 1 genomic DNA for glycoprotein C, complete cds
Length = 2337
Score = 41.6 bits (96), Expect = 0.15
Identities = 30/114 (26%), Positives = 48/114 (41%), Gaps = 1/114 (0%)
Frame = +3
Query: 280 GQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGR 339
GQV + + Y PP V+L P RA+ E +C V++++P ++ W L G P R
Sbjct: 933 GQVNVSVVAYHPPSVNLTP----RASLFNKTFEAVCAVANYFPPRSTKLTWYLDGKPIER 1100
Query: 340 SQKAE-GQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPAS 392
++ W+ DG ++ S L P T+ C + P S
Sbjct: 1101 QYISDTASVWI-------DGLITRSSVLAIPTTETDSEKPDIRCDLEWHESPVS 1241
>emb|AJ293808.1|GMO293808 Gadus morhua mRNA for immunoglobulin light chain (igl2 gene),
non-rearranged, partially spliced, clone S3-41
Length = 1792
Score = 41.6 bits (96), Expect = 0.15
Identities = 31/99 (31%), Positives = 44/99 (44%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP + LM AT PG P L+CL F+P+G + W G R ++ +
Sbjct: 1309 PPSLELMVATQP-PVPGLGGPTLVCLAKGFHPAGA-ALSWS-EDGASVRGEEVQA----G 1467
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ DGS SLS L P T + G + C + H +L
Sbjct: 1468 VAQRQPDGSYSLSSVLLLPS-TRWRSGHTFTCHVSHSAL 1581
>gb|M60063.1|MACMHDRBE Macaca nemestrina MHC class II Mane-DRB4*05 mRNA, 3' end
Length = 1100
Score = 40.8 bits (94), Expect = 0.26
Identities = 31/98 (31%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 362 PKVTVYPA---KTQPLQHHTLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 511
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P Q G Y C++ HPS+
Sbjct: 512 LIHNGDWTFQTLVMLETVP----QSGEVYTCQVEHPSV 613
>gb|AF256652.1|AF256652 Caiman crocodilus MHC class II beta chain (hcIIbeta) gene, complete
cds
Length = 6914
Score = 40.4 bits (93), Expect = 0.34
Identities = 33/123 (26%), Positives = 53/123 (42%), Gaps = 7/123 (5%)
Frame = +3
Query: 277 YLQGQVTLELAVYKP-------PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVE 329
+L G + L + + P PKV + P A P L+C ++ FYP GG+EV+
Sbjct: 3492 FLDGGIILSSSSFSPSLSLSVKPKVKVSPTKSGAQAH---PDTLICSMTGFYP-GGIEVK 3659
Query: 330 WELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
W G Q+ + L + D + + L+ P + G Y C++ H SL
Sbjct: 3660 WLKNG------QEQTAGVVSTELMQNGDWTFQILVMLEMTP----RSGDVYTCQVEHSSL 3809
Query: 390 PAS 392
P +
Sbjct: 3810 PGT 3818
>emb|X75612.1|ECPK42 E.caballus mRNA for immunoglobulin kappa light chain
Length = 911
Score = 40.4 bits (93), Expect = 0.34
Identities = 36/119 (30%), Positives = 55/119 (45%), Gaps = 5/119 (4%)
Frame = +3
Query: 276 PYLQGQVTLELAVYKP---PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWEL 332
PY+ GQ T +L + + P + P + + G A ++CLV FYPSG + W++
Sbjct: 348 PYMFGQGT-KLEIKRDDAKPSAFIFPPSSEELSSGSA--SVVCLVYGFYPSGA-TINWKV 515
Query: 333 RGGPGGRSQKAEGQRWLSAL--RHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
G A+ + S+L + D + SLS L P E H YAC + H +L
Sbjct: 516 DG-------LAKTSSFHSSLTEQDSKDNTYSLSSTLTLPKADYEAHNV-YACEVSHKTL 668
>gb|U17165.1|CMU17165 Cricetulus migratorius Ig kappa light chain mRNA, complete cds
Length = 973
Score = 40.4 bits (93), Expect = 0.34
Identities = 29/101 (28%), Positives = 47/101 (45%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P VS+ P + + G A L+C V++FYP + V+W++ G S+K +G
Sbjct: 461 PTVSIFPPSSEQLGTGSAT--LVCFVNNFYPK-DINVKWKVDG-----SEKRDGVLQSVT 616
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPAS 392
+ D + SLS L E+H Y C + H + A+
Sbjct: 617 DQDSKDSTYSLSSTLSLTKADYERHNL-YTCEVTHKTSTAA 736
>emb|AJ293807.1|GMO293807 Gadus morhua mRNA for immunoglobulin light chain, isotype 2 (igl2
gene), clone S1-41 (L-V-J-C)
Length = 902
Score = 40.4 bits (93), Expect = 0.34
Identities = 30/99 (30%), Positives = 44/99 (44%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP + LM AT PG P L+CL F+P+G + W G R ++ +
Sbjct: 448 PPSLELMVATQP-PVPGLGGPTLVCLAKGFHPAGA-ALSWS-EDGASVRGEEVQA----G 606
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ DGS SL+ L P T + G + C + H +L
Sbjct: 607 VAQRQPDGSYSLNSVLLLPS-TRWRSGHTFTCHVSHSAL 720
>gb|U17870.1|CMU17870 Cricetulus migratorius 145.2c11 kappa light chain mRNA, complete
cds
Length = 902
Score = 40.4 bits (93), Expect = 0.34
Identities = 29/101 (28%), Positives = 47/101 (45%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P VS+ P + + G A L+C V++FYP + V+W++ G S+K +G
Sbjct: 397 PTVSIFPPSSEQLGTGSAT--LVCFVNNFYPK-DINVKWKVDG-----SEKRDGVLQSVT 552
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPAS 392
+ D + SLS L E+H Y C + H + A+
Sbjct: 553 DQDSKDSTYSLSSTLSLTKADYERHNL-YTCEVTHKTSTAA 672
>emb|X07174.1|GGIGGH1 Chicken mRNA for IgG H-chain (HC36) D-J-C
Length = 1547
Score = 40.0 bits (92), Expect = 0.44
Identities = 30/97 (30%), Positives = 47/97 (47%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V ++ + + E+ ELLCLV+ F P+ EVEW L G GG ++ S
Sbjct: 532 PEVQVLHPSSCTPSQSESV-ELLCLVTGFSPASA-EVEW-LVDGVGGLLVASQSPAVRSG 702
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
+ V++SG T + G Y+CR+ HP+
Sbjct: 703 STYSLSSRVNVSG-------TDWREGKSYSCRVRHPA 792
>gb|L07790.1|MVIIGLVJCA Mink immunoglobulin lambda chain (IGL@) variable region, joining
region, constant region mRNA, complete cds
Length = 868
Score = 40.0 bits (92), Expect = 0.44
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L+PA+ A +A L+CL+S FYPS G+ V W+ G P G + K Q
Sbjct: 403 PSVTLLPASSEELAANKAT--LVCLISDFYPS-GVTVAWKADGSPVTQGVETTKPSKQ-- 567
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + ++C + H
Sbjct: 568 -------SNNRYAASSYLSLSPDKWQSHSS-FSCLVTH 657
>gb|AF256651.1|AF256651 Caiman crocodilus MHC class II beta chain (hcIIbeta) gene, complete
cds
Length = 9649
Score = 40.0 bits (92), Expect = 0.44
Identities = 34/122 (27%), Positives = 51/122 (40%), Gaps = 7/122 (5%)
Frame = +1
Query: 276 PYLQGQVTLELAVYKP-------PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEV 328
P+ G L + + P PKV + P A P L+C V+ FYP GG+EV
Sbjct: 4468 PFPDGGTILSPSSFSPSLSLSVKPKVKVSPTKSGAQAH---PDTLVCSVTGFYP-GGIEV 4635
Query: 329 EWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
+W G Q+ + L + D + + L+ P + G Y C++ H S
Sbjct: 4636 KWLKNG------QEQTAGVVSTELMQNGDWTFQILVMLEMTP----RSGDAYTCQVEHSS 4785
Query: 389 LP 390
LP
Sbjct: 4786 LP 4791
>gb|U23960.1|ACU23960 Aphelocoma coerulescens isolate 2.4 MHC class II B mRNA, partial
cds
Length = 599
Score = 40.0 bits (92), Expect = 0.44
Identities = 31/99 (31%), Positives = 48/99 (48%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYP+ ++V W +G Q+ G +
Sbjct: 295 PPSVSI---SLVPSSSQASPGRLLCSVMDFYPAE-IQVRW-FQG-----QQELSGHVVPT 444
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP QHG Y C++ H SL
Sbjct: 445 DIVPNGDWTYQLLVLLEIPP----QHGVSYTCQVEHVSL 549
>ref|XM_090120.1| Homo sapiens similar to unnamed protein product (LOC160211), mRNA
Length = 2757
Score = 39.7 bits (91), Expect = 0.58
Identities = 31/115 (26%), Positives = 50/115 (42%), Gaps = 3/115 (2%)
Frame = +1
Query: 198 GPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQE-GAVAFA--AWDDDEPWGPWTGNG 254
G PP L WR++ +G++P +E G+VA A AW + +
Sbjct: 2005 GDPPPRLRWRKE---------------DGELPTGREKGSVAVANPAWGGEWSRYEIRSDH 2139
Query: 255 TFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEA 309
+ W+ V EGTY + + + L+V+ PP++ P AAPGE+
Sbjct: 2140 SLWIGHVSAEDEGTYTCVAENSVGRAEASGSLSVHVPPQLVTQPQD-QMAAPGES 2301
>gb|M97616.1|SQIDRB Scurius aberti aberti (A85) MHC class II DR- beta chain mRNA,
complete cds
Length = 1225
Score = 39.3 bits (90), Expect = 0.76
Identities = 36/116 (31%), Positives = 52/116 (44%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P + P + L+C VS FYP G +EV W G Q+ E +
Sbjct: 453 PKVTVYPTKMQ---PLQHHNLLVCAVSGFYP-GHIEVRWFRNG------QEEEAGVVSTG 602
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLSG 407
L + D + + L+ P Q G Y C++ HPSL + VT+E SG
Sbjct: 603 LIQNGDWTFQVLVMLETVP----QSGEVYVCQVEHPSL-----MSPVTVEWRAQSG 743
>gb|AC004973.1|AC004973 Homo sapiens PAC clone RP5-1139I1 from Xq23, complete sequence
Length = 97037
Score = 39.3 bits (90), Expect = 0.76
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 327 EVEWELRGGPGGRSQKAEGQR-WLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIH 385
++E+ + G G + A GQ WL A+R G V++ G L PPPV ++ AR+ +
Sbjct: 7875 QLEFRVGVGLAGPALGASGQPCWLRAMRDLGPGPVAVEGVLSPPPVPADRRCARF---LT 8045
Query: 386 HPSLPASG 393
P LP+ G
Sbjct: 8046 EP*LPSRG 8069
>gb|M27015.1|HUMHLADRWB Human lymphocyte antigen (DRw8) mRNA
Length = 834
Score = 38.9 bits (89), Expect = 0.99
Identities = 36/140 (25%), Positives = 56/140 (39%)
Frame = +1
Query: 250 WTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEA 309
W G +W P T + G+V PKV++ P+ + P +
Sbjct: 190 WKTGGPWWTPTAD-----TTTGLVRASQCSGEVH--------PKVTVYPS---KTQPLQH 321
Query: 310 PPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPP 369
L+C VS FYP G +EV W G Q+ + + L H+ D + L+
Sbjct: 322 HNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTGLIHNGDWTFQTLVMLETV 480
Query: 370 PVTTEQHGARYACRIHHPSL 389
P + G Y C++ HPS+
Sbjct: 481 P----RSGEVYTCQVEHPSV 528
>gb|M27126.1|HUMHLADRWC Human lymphocyte antigen (DRw8) mRNA
Length = 830
Score = 38.9 bits (89), Expect = 0.99
Identities = 36/140 (25%), Positives = 56/140 (39%)
Frame = +1
Query: 250 WTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEA 309
W G +W P T + G+V PKV++ P+ + P +
Sbjct: 190 WKTGGPWWTPTAD-----TTTGLVRASQCSGEVH--------PKVTVYPS---KTQPLQH 321
Query: 310 PPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPP 369
L+C VS FYP G +EV W G Q+ + + L H+ D + L+
Sbjct: 322 HNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTGLIHNGDWTFQTLVMLETV 480
Query: 370 PVTTEQHGARYACRIHHPSL 389
P + G Y C++ HPS+
Sbjct: 481 P----RSGEVYTCQVEHPSV 528
>gb|U23962.1|ACU23962 Aphelocoma coerulescens isolate 3.2 MHC class II B mRNA, partial
cds
Length = 599
Score = 38.9 bits (89), Expect = 0.99
Identities = 31/99 (31%), Positives = 47/99 (47%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYPS ++V W +G Q+ G +
Sbjct: 295 PPSVSI---SLVPSSSQPSPGRLLCSVMDFYPS-EIQVRW-FQG-----QQELSGHVVAT 444
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP Q G Y C++ H SL
Sbjct: 445 DIVPNGDWTYQLLVLLEIPP----QRGVSYTCQVEHVSL 549
>gb|AF328738.1|AF328738 Agelaius phoeniceus cosmid Rwcos3, partial sequence
Length = 45375
Score = 38.5 bits (88), Expect = 1.3
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Frame = +3
Query: 284 LELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKA 343
L L++ PP VS+ + + PG P LLC V FYP+ ++V W
Sbjct: 43623 LSLSLPVPPSVSISLVPPSSSQPG--PGRLLCSVMDFYPA-AIQVRW------------F 43757
Query: 344 EGQRWLSA------LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+GQ+ LS + + D + L L+ PP + G Y+C++ H SL
Sbjct: 43758 QGQQELSEHVVATDVVPNGDWTYQLLVLLETPP----RRGLTYSCQVEHVSL 43901
Score = 38.5 bits (88), Expect = 1.3
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Frame = +1
Query: 284 LELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKA 343
L L++ PP VS+ + + PG P LLC V FYP+ ++V W
Sbjct: 18694 LSLSLPVPPSVSISLVPPSSSQPG--PGRLLCSVMDFYPA-AIQVRW------------F 18828
Query: 344 EGQRWLSA------LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+GQ+ LS + + D + L L+ PP + G Y+C++ H SL
Sbjct: 18829 QGQQELSEHVVATDVVPNGDWTYQLLVLLETPP----RRGLTYSCQVEHVSL 18972
>gb|M76490.1|SOEMHCIIDR Tamarin MHC class II (DRB*03) processed pseudogene, complete
Length = 1075
Score = 38.5 bits (88), Expect = 1.3
Identities = 30/98 (30%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P + L+C VS FYP G +EV+W Q+ + +
Sbjct: 369 PKVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVKWFRN------DQEEKAGVVSTG 518
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P Q G Y C++ HPS+
Sbjct: 519 LIHNGDWTFQTLVMLETVP----QSGEVYTCQVEHPSV 620
>gb|M61771.1|HUMIGLCC Human Ig germline lambda-chain gene C-region
Length = 390
Score = 38.5 bits (88), Expect = 1.3
Identities = 35/118 (29%), Positives = 51/118 (42%), Gaps = 3/118 (2%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CLVS FYP G + V W+ G P G + K Q
Sbjct: 19 PSVTLFPPSSEELQANKAT--LVCLVSDFYP-GAVTVAWKADGSPVKVGVETTKPSKQ-- 183
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
S+ + S +L P + H + Y+CR+ H G + E T+ A S
Sbjct: 184 -------SNNKYAASSYLSLTPEQWKSHRS-YSCRVTH-----EGSTVEKTVAPAECS 318
>emb|X51755.1|HSIGLAMB Human lambda-immunoglobulin constant region complex (germline)
Length = 33737
Score = 38.5 bits (88), Expect = 1.3
Identities = 35/118 (29%), Positives = 51/118 (42%), Gaps = 3/118 (2%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CLVS FYP G + V W+ G P G + K Q
Sbjct: 31218 PSVTLFPPSSEELQANKAT--LVCLVSDFYP-GAVTVAWKADGSPVKVGVETTKPSKQ-- 31382
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
S+ + S +L P + H + Y+CR+ H G + E T+ A S
Sbjct: 31383 -------SNNKYAASSYLSLTPEQWKSHRS-YSCRVTH-----EGSTVEKTVAPAECS 31517
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 4025 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 4189
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 4190 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 4279
>gb|AC009057.8| Homo sapiens chromosome 16 clone RP11-274A17, complete sequence
Length = 170821
Score = 38.5 bits (88), Expect = 1.3
Identities = 45/150 (30%), Positives = 59/150 (39%), Gaps = 22/150 (14%)
Frame = -3
Query: 186 PPTSEAASSLAPGPPPFGLEWRRQHLGKGH----LLLAATP-GLNGQMPAAQEGAVAFAA 240
P E +L+ G PP G RQ +GH LLL A P G G +AQ
Sbjct: 73151 PSLMEETRALSSGHPPLG---GRQPSIRGHAS*PLLLFADPCGQQGASGSAQH*VPPAQH 72981
Query: 241 WDDDEPW--------GPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQG---QVTLEL--- 286
W D PW GP +G W Q + + +P +G T+E+
Sbjct: 72980 WQDSAPW*PGVR*AQGPGSGEAGGWTLHS*GSQIPGQMPSFPVPPQRGPPLPATMEMGLL 72801
Query: 287 -AVYKPPKVSLMPA--TLARAAPGEAPPEL 313
A Y P +V L P + AAP +A EL
Sbjct: 72800 GAFYLPGEVQLAPCPPPVCAAAPPQAGLEL 72711
>gb|M64307.1|HEFIGLAAA H.francisci Ig rearranged L-chain mRNA J-C region, clone 1301
Length = 684
Score = 38.5 bits (88), Expect = 1.3
Identities = 31/100 (31%), Positives = 45/100 (45%)
Frame = +1
Query: 290 KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWL 349
+ P V L+P + G A L CLVSHF P G + V W + ++ +
Sbjct: 367 RKPSVLLLPPSSEEIDSGWAT--LSCLVSHFKP-GFVRVLWRV------DDKETDSGVTT 519
Query: 350 SALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ SD + SLS +L+ P T G+ Y C + H SL
Sbjct: 520 GTVSTDSDQTYSLSSYLR-VPATAWNKGSSYTCSVDHGSL 636
>emb|X57808.1|HSIGVL008 Human germline immunoglobulin lambda light chain gene
Length = 9828
Score = 38.5 bits (88), Expect = 1.3
Identities = 35/118 (29%), Positives = 51/118 (42%), Gaps = 3/118 (2%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CLVS FYP G + V W+ G P G + K Q
Sbjct: 8754 PSVTLFPPSSEELQANKAT--LVCLVSDFYP-GAVTVAWKADGSPVKVGVETTKPSKQ-- 8918
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
S+ + S +L P + H + Y+CR+ H G + E T+ A S
Sbjct: 8919 -------SNNKYAASSYLSLTPEQWKSHRS-YSCRVTH-----EGSTVEKTVAPAECS 9053
>dbj|D87017.2|D87017 Homo sapiens immunoglobulin lambda gene locus DNA, clone:75C12
Length = 40162
Score = 38.5 bits (88), Expect = 1.3
Identities = 35/118 (29%), Positives = 51/118 (42%), Gaps = 3/118 (2%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CLVS FYP G + V W+ G P G + K Q
Sbjct: 19726 PSVTLFPPSSEELQANKAT--LVCLVSDFYP-GAVTVAWKADGSPVKVGVETTKPSKQ-- 19890
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
S+ + S +L P + H + Y+CR+ H G + E T+ A S
Sbjct: 19891 -------SNNKYAASSYLSLTPEQWKSHRS-YSCRVTH-----EGSTVEKTVAPAECS 20025
>gb|AC002060.3|AC002060 Homo sapiens Chromosome 22q11.2 BAC Clone 142e2 In IGLC Region,
complete sequence
Length = 166295
Score = 38.5 bits (88), Expect = 1.3
Identities = 35/118 (29%), Positives = 51/118 (42%), Gaps = 3/118 (2%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CLVS FYP G + V W+ G P G + K Q
Sbjct: 80067 PSVTLFPPSSEELQANKAT--LVCLVSDFYP-GAVTVAWKADGSPVKVGVETTKPSKQ-- 80231
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
S+ + S +L P + H + Y+CR+ H G + E T+ A S
Sbjct: 80232 -------SNNKYAASSYLSLTPEQWKSHRS-YSCRVTH-----EGSTVEKTVAPAECS 80366
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 52869 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 53033
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 53034 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 53123
>ref|XM_062429.1| Homo sapiens similar to dJ553F4.3 (novel zinc-finger protein)
(LOC121032), mRNA
Length = 2277
Score = 38.1 bits (87), Expect = 1.7
Identities = 38/125 (30%), Positives = 51/125 (40%)
Frame = +1
Query: 166 PAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLN 225
P P R GQ P + AA + P P P GLE + G G L+ A P
Sbjct: 1657 PPPPARRGQ------------PRAVAAVVVTPLPDPLGLE-EMKDTGAG-LVPEAVP--- 1785
Query: 226 GQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLE 285
G+ P A+ A PWG TG+ + W ++P E L IH P+L
Sbjct: 1786 GKPPFAELNAELSIVVGGAAPWGQ-TGDPSQWKRAIEPLAE-ILLNVIHKPWLMAAFRCP 1959
Query: 286 LAVYK 290
L+ +K
Sbjct: 1960 LSCWK 1974
>emb|X75613.1|ECJKCK E.caballus Jk-Ck gene
Length = 5769
Score = 38.1 bits (87), Expect = 1.7
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P + P + + G A ++CLV FYPSG + W++ G A+ + S+
Sbjct: 4929 PSAFIFPPSSEELSSGSA--SVVCLVYGFYPSGA-TINWKVDG-------LAKTSSFHSS 5078
Query: 352 L--RHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + SLS L P E H YAC + H +L
Sbjct: 5079 LTEQDSKDNTYSLSSTLTLPKADYEAHNV-YACEVSHKTL 5195
>gb|AY055780.1| Ornithorhynchus anatinus IgE immunoglobulin mRNA, complete cds
Length = 2008
Score = 38.1 bits (87), Expect = 1.7
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +1
Query: 311 PELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPP 370
P+L CL+ + G+EV W G ++ E Q+ +G++S + P
Sbjct: 1207 PKLTCLIIDLVSTEGMEVTWSRESGTPLSAESFEEQK-------QFNGTMSFISTV-PVN 1362
Query: 371 VTTEQHGARYACRIHHPSLPA 391
+ G Y CR+ HP LP+
Sbjct: 1363 IQDWNEGESYTCRVAHPDLPS 1425
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/98 (29%), Positives = 50/98 (50%), Gaps = 2/98 (2%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP V L+ ++ +A ELLCL++ + P+ G++V+W + G QKAE +
Sbjct: 823 PPTVKLLHSSCDPRGDSQASIELLCLITGYSPA-GIQVDWLVDG------QKAENLFPYT 981
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQ--HGARYACRIHH 386
A +G+ S S H + +T +Q G + C++ H
Sbjct: 982 A-PPKREGNRSFSSHSE-VNITQDQWLSGKTFTCQVTH 1089
>emb|X57823.1|HSIGVL033 Human rearranged immunoglobulin lambda light chain mRNA
Length = 755
Score = 38.1 bits (87), Expect = 1.7
Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 14/197 (7%)
Frame = +1
Query: 204 LEWRRQHLGKGHLLLA-----ATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWL 258
+ W +QH GK L+ G++ + ++ G A + +
Sbjct: 160 VSWYQQHPGKAPKLMIYDVTNRPSGVSNRFSGSKSGNTA-----------------SLTI 288
Query: 259 PRVQPFQEGTYLATIHLP---YLQGQVTLELAVYKP---PKVSLMPATLARAAPGEAPPE 312
+QP E Y T Y+ G T + +P P V+L P + +A
Sbjct: 289 SGLQPEDEADYYCTSKTSSSFYVFGTGTKVSVLGQPKANPTVTLFPPSSEELQANKAT-- 462
Query: 313 LLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPP 369
L+CL+S FYP G + V W+ G P G + K Q S+ + S +L
Sbjct: 463 LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ---------SNNKYAASSYLSLT 612
Query: 370 PVTTEQHGARYACRIHH 386
P + H + Y+C++ H
Sbjct: 613 PEQWKSHRS-YSCQVTH 660
>gb|M60059.1|MACMHDRBA Macaca nemestrina MHC class II Mane-DRB1*01 mRNA, complete cds
Length = 1128
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C V+ FYP G +EV W G Q+ + +
Sbjct: 391 PKVTVYPSKIQ---PLQHHNLLVCSVNGFYP-GSIEVRWFRNG------QEEKAGVVSTG 540
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P Q G Y C++ HPS+
Sbjct: 541 LIHNGDWTFQTLVMLETVP----QSGEVYTCQVEHPSV 642
>gb|L02545.1|HUMMHDR2A Homo sapiens (clone HLA-DR2/1-4) MHC class II HLA-DR beta-1
(HLA-DRB1) mRNA, complete cds
Length = 826
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 390 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 539
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 540 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 641
>gb|M28583.1|HUMMHCDW2C Human (clone FJ0-1) MHC class II DR subtype Dw2 mRNA, complete cds,
haplotype HLA-DR2
Length = 1033
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 415 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 564
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 565 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 666
>gb|U23975.1|ACU23975 Aphelocoma coerulescens isolate 2.1 MHC class II B mRNA, partial
cds
Length = 599
Score = 37.7 bits (86), Expect = 2.2
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYP+ ++V W +G Q+ G +
Sbjct: 295 PPSVSI---SLVPSSSQPSPGRLLCSVMDFYPA-EIQVRW-FQG-----QQELSGHVVAT 444
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP Q G Y C++ H SL
Sbjct: 445 DIVPNGDWTYQLLVLLEIPP----QRGVSYTCQVEHVSL 549
>gb|U23973.1|ACU23973 Aphelocoma coerulescens isolate 1.2 MHC class II B mRNA, partial
cds
Length = 599
Score = 37.7 bits (86), Expect = 2.2
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYP+ ++V W +G Q+ G +
Sbjct: 295 PPSVSI---SLVPSSSQPSPGRLLCSVMDFYPA-EIQVRW-FQG-----QQELSGHVVAT 444
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP Q G Y C++ H SL
Sbjct: 445 DIVPNGDWTYQLLVLLEIPP----QRGVSYTCQVEHVSL 549
>gb|U23966.1|ACU23966 Aphelocoma coerulescens isolate 3.6 MHC class II B mRNA, partial
cds
Length = 599
Score = 37.7 bits (86), Expect = 2.2
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYP+ ++V W +G Q+ G +
Sbjct: 295 PPSVSI---SLVPSSSRPSPGRLLCSVMDFYPA-EIQVRW-FQG-----QQELSGHVVAT 444
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP Q G Y C++ H SL
Sbjct: 445 DIVPNGDWTYQLLVLLEIPP----QRGVSYTCQVEHVSL 549
>gb|U23964.1|ACU23964 Aphelocoma coerulescens isolate 3.4 MHC class II B mRNA, partial
cds
Length = 599
Score = 37.7 bits (86), Expect = 2.2
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYP+ ++V W +G Q+ G +
Sbjct: 295 PPSVSI---SLVPSSSQPSPGRLLCSVMDFYPA-EIQVRW-FQG-----QQELSGHVVAT 444
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP Q G Y C++ H SL
Sbjct: 445 DIVPNGDWTYQLLVLLEIPP----QRGVSYTCQVEHVSL 549
>gb|U23963.1|ACU23963 Aphelocoma coerulescens isolate 3.3 MHC class II B mRNA, partial
cds
Length = 599
Score = 37.7 bits (86), Expect = 2.2
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYP+ ++V W +G Q+ G +
Sbjct: 295 PPSVSI---SLVPSSSQPSPGRLLCSVMDFYPA-EIQVRW-FQG-----QQELSGHVVAT 444
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP Q G Y C++ H SL
Sbjct: 445 DIVPNGDWTYQLLVLLEIPP----QRGVSYTCQVEHVSL 549
>dbj|AB052658.1|AB052658 Paralichthys olivaceus mRNA for immunoglobulin D, complete cds
Length = 3244
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/112 (25%), Positives = 50/112 (43%), Gaps = 2/112 (1%)
Frame = +3
Query: 279 QGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGG 338
+G + +++P + P +AP + P L+CLVS FYP + V WE G
Sbjct: 2247 EGHTSKSRVLHQPTVKIIQPTASELSAPDDLP--LICLVSGFYPPNVI-VYWE------G 2399
Query: 339 RSQKAEGQRWLSA--LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
Q+ R+ ++ + + + S+S L TE + Y+C + H S
Sbjct: 2400 SGQRLPSTRYTNSDVWTYTGNSTYSMSSRLNIS--KTEDKSSTYSCFVRHES 2549
>gb|M28584.1|HUMMHCDW2D Human (clone DHO-8) MHC class II DR subtype Dw12 mRNA, 3' end,
haplotype HLA-DR2
Length = 1091
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 347 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 496
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 497 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 598
>gb|M20504.1|HUMMHDRGB Human MHC class II HLA DR-beta-2 mRNA, complete cds
Length = 1039
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 411 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 560
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 561 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 662
>gb|M16959.1|HUMMHDRA2F Human MHC class II HLA-DR2 (non-Dw2/non-Dw12) b-associated
glycoprotein beta-chain mRNA, 3' end
Length = 714
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 289 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 438
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 439 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 540
>gb|M16957.1|HUMMHDRA2D Human MHC class II HLA-DR2 (Dw2) b-associated glycoprotein
beta-chain mRNA, 3' end
Length = 714
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 289 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 438
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 439 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 540
>emb|Z27164.1|PFMHCDR02 P.fulvus MHC class II DRB gene, exon 2 (partial)
Length = 1092
Score = 37.7 bits (86), Expect = 2.2
Identities = 31/97 (31%), Positives = 47/97 (47%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P + L+C V+ FYP G +EV+W LR G ++ E +
Sbjct: 384 PKVTVYPA---KTQPLQHHNLLVCSVNGFYP-GNIEVKW-LRNG-----REEEAAEDSTG 533
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
L + D + L+ P Q G Y C++ HPS
Sbjct: 534 LIQNGDWTFQTLVMLEIVP----QSGEVYTCQVEHPS 632
>gb|U56640.1|HSU56640 Homo sapiens MHC class II HLA-DR2 (HLA-DRB1*1601) mRNA, partial cds
Length = 752
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 233 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 382
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 383 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 484
>gb|L27742.1|MACDRBW201 Macaca mulatta MHC class II DRB mRNA, Mamu-DRB*w20101, complete cds
Length = 964
Score = 37.7 bits (86), Expect = 2.2
Identities = 30/98 (30%), Positives = 45/98 (45%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 376 PKVTVYPA---KTQPLQHHTLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 525
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P Q G Y C++ HPS+
Sbjct: 526 LIQNGDWTFQTLVMLETVP----QSGEVYTCQVEHPSV 627
>gb|M20430.1|HUMMHDRWA Human MHC class II HLA-DR-beta (DR2-DQw1/DR4 DQw3) mRNA, complete
cds, clone ROF-beta-2b
Length = 1158
Score = 37.7 bits (86), Expect = 2.2
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 419 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 568
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 569 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 670
>emb|AL158165.15|AL158165 Human DNA sequence from clone RP11-476E15 on chromosome 10, complete
sequence [Homo sapiens]
Length = 169358
Score = 37.7 bits (86), Expect = 2.2
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -2
Query: 342 KAEGQRWLSALRHHSDGSVSLSGHLQ---PPPVTTEQHGARYACRIHHPSL 389
K++ + +RH+SDG++S S HL PPP T Q AR H P L
Sbjct: 32335 KSDSAKQGGLIRHYSDGNLSPSPHLSLLPPPPACTHQDHARTCSNAHSPIL 32183
>dbj|AB062112.1| Homo sapiens HLA-DRB1*1405 mRNA for MHC class II antigen, complete
cds
Length = 858
Score = 37.4 bits (85), Expect = 2.9
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 420 PKVTVYPS---KTQPLQHHSLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 569
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 570 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 671
>gb|M60060.1|MACMHDRBB Macaca nemestrina MHC class II Mane-DRB3*02 mRNA, complete cds
Length = 1087
Score = 37.4 bits (85), Expect = 2.9
Identities = 30/98 (30%), Positives = 45/98 (45%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 398 PKVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 547
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P Q G Y C++ HPS+
Sbjct: 548 LIQNGDWTFQTLVMLETVP----QSGEVYTCQVEHPSV 649
>gb|M30387.1|MUSIGLBB Mouse Ig lambda-chain mRNA, 3' flank
Length = 699
Score = 37.4 bits (85), Expect = 2.9
Identities = 35/111 (31%), Positives = 50/111 (44%), Gaps = 18/111 (16%)
Frame = +1
Query: 244 DEPWGPWTGNGTF---------WLPRVQPFQEGTYLATIHLP------YLQG---QVTLE 285
DE GPW+ +G L ++ P G + LP Y+ G Q+T+
Sbjct: 55 DESCGPWSFSGNNRPSYGPSRQLLFQIIPRGAGPRCSFYRLPSKPQFWYVFGGGTQLTIL 234
Query: 286 LAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP 336
P V+L +L P P+L+CLVS FYP G L V+W++ G P
Sbjct: 235 GQPKSDPLVTLFLPSLKNLQPTR--PQLVCLVSEFYP-GTLVVDWKVDGVP 378
>gb|AF256650.1|AF256650 Caiman crocodilus MHC class II alpha chain (hcIIalpha) gene, complete
cds
Length = 13891
Score = 37.4 bits (85), Expect = 2.9
Identities = 36/139 (25%), Positives = 57/139 (40%), Gaps = 5/139 (3%)
Frame = -2
Query: 257 WLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEA-----PP 311
W PR P +L Q+ L L++ P + P T + +P ++ P
Sbjct: 4383 WRPRFFPEGRNAFL----------QLILSLSLSPLPAI---PGTKVKVSPPKSGAQAHPD 4243
Query: 312 ELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPV 371
L+C V FYPS +EV+W G Q+ + L + D + + L+ P
Sbjct: 4242 TLICSVMGFYPSR-IEVKWLKNG------QEQMAGVVSTELMQNGDWTFQILVMLEMTP- 4087
Query: 372 TTEQHGARYACRIHHPSLP 390
+ G Y C++ H SLP
Sbjct: 4086 ---RSGDAYTCQVEHSSLP 4039
>gb|U96161.2|U96161 Drosophila takahashii putative amylase-related protein (Amyrel) gene,
complete cds
Length = 1669
Score = 37.4 bits (85), Expect = 2.9
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -2
Query: 344 EGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHP--SLPASGRSAEVTLE 401
+ + WLS L HHS+ SVS + L+P T R C HP P+S S E+ L
Sbjct: 1383 QNEIWLSPLSHHSESSVSRTAFLKP----TIA*ICRQRCSQIHPFTQAPSSSNSGEIILS 1216
Query: 402 VAGLSG 407
A G
Sbjct: 1215 CASCGG 1198
>gb|S56369.1|S56369 Popy-DRB5*0603=major histocompatibility complex class II DR region
beta chain {beta 2 domain, connecting peptides,
cytoplasmic region, transmembrane region} [Pongo
pygmaeus=orangutan, mRNA Partial, 431 nt]
Length = 431
Score = 37.4 bits (85), Expect = 2.9
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 6 PKVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 155
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + + L+ P + G Y C++ HPS+
Sbjct: 156 LIQNGDWTFQILVMLETVP----RSGEGYTCQVEHPSV 257
>ref|XM_042483.1| Homo sapiens similar to HLA CLASS II HISTOCOMPATIBILITY ANTIGEN,
DR-1 BETA CHAIN PRECURSOR (CLONE P2-BETA-3) (LOC112932),
mRNA
Length = 1097
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 405 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 554
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 555 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 656
>emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N13 on chromosome 6p21. Contains
the HLA-DRB1*03011 and HLA-DQA1*05011 genes for major
histocompatibility complex class II DR beta 1 and DQ alpha
1, a CpG island, ESTs, STSs and GSSs, complete sequence
[Homo sapiens]
Length = 86896
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 72218 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 72367
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 72368 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 72469
>gb|M11867.1|HUMMHDR5B Human MHC class II HLA DR5 DR-beta-chain mRNA, complete cds
Length = 1097
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 405 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 554
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 555 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 656
>gb|BC008403.1|BC008403 Homo sapiens, Similar to major histocompatibility complex, class
II, DR beta 5, clone MGC:14522 IMAGE:4272571, mRNA,
complete cds
Length = 1202
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 439 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 588
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 589 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 690
>ref|NM_017239.1| Rattus norvegicus myosin heavy chain, cardiac muscle, adult (Myh6),
mRNA
Length = 5930
Score = 37.0 bits (84), Expect = 3.8
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Frame = +1
Query: 333 RGGPGGRS---QKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
RGG GG ++ EGQ RH G+ +GH +PP E+HGA + P+
Sbjct: 5257 RGGGGGAGV*ERRGEGQEGHHRCRHDGRGAEEGAGHQRPPGAHEEEHGADH----QGPAA 5424
Query: 390 PASGRSAE 397
PA A+
Sbjct: 5425 PAGRGRAD 5448
>emb|X15938.1|RNMHCA Rat mRNA for alpha cardiac myosin heavy chain
Length = 5930
Score = 37.0 bits (84), Expect = 3.8
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Frame = +1
Query: 333 RGGPGGRS---QKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
RGG GG ++ EGQ RH G+ +GH +PP E+HGA + P+
Sbjct: 5257 RGGGGGAGV*ERRGEGQEGHHRCRHDGRGAEEGAGHQRPPGAHEEEHGADH----QGPAA 5424
Query: 390 PASGRSAE 397
PA A+
Sbjct: 5425 PAGRGRAD 5448
>dbj|D00943.1|HUMCAMHC Homo sapiens mRNA for cardiac alpha-myosin heavy chain, complete cds
Length = 5820
Score = 37.0 bits (84), Expect = 3.8
Identities = 17/45 (37%), Positives = 24/45 (52%)
Frame = +3
Query: 334 GGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGA 378
G G + ++ EGQ A RH G+ +GH +PP E+HGA
Sbjct: 5235 GSAGVQKRRGEGQEGHHACRHDGRGAEEGAGHQRPPGAHEEEHGA 5369
>ref|XM_069903.1| Homo sapiens similar to KIAA1486 protein (LOC136467), mRNA
Length = 2247
Score = 37.0 bits (84), Expect = 3.8
Identities = 59/207 (28%), Positives = 73/207 (34%), Gaps = 14/207 (6%)
Frame = +3
Query: 198 GPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAA-QEGAVAFAAWDDDEPWGPWTGNGTF 256
GP G WR + G GH PGL Q + Q GA WD +P G GT
Sbjct: 1653 GPAEEGPLWREKSKGVGHRGRGRCPGLEWQCRGSRQGGA*GQGPWDIGDPSEKPGGRGTA 1832
Query: 257 -----WLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPP 311
W PR +P + L LP L Q L + PP + R+ G AP
Sbjct: 1833 GQDPPWRPRREPHRAAHSLP--DLPRLPPQWRLHGRL--PPGALRLH---LRSPAGRAPH 1991
Query: 312 ELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSG------- 364
P+ G GP + A G R ALR D G
Sbjct: 1992 -----TPALQPAQGCPEP----AGPRA*REAAGGDR-AQALRVQGDQGAPPPGPRPLQAG 2141
Query: 365 -HLQPPPVTTEQHGARYACRIHHPSLP 390
H PP + G R A ++ HP+LP
Sbjct: 2142 EHAHPPQLAA---GTR-APQVRHPALP 2210
>gb|L76133.1|HUMMH1302D Homo sapiens MHC lymphocyte antigen (DRB1*1302) mRNA, complete cds
Length = 853
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 416 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 565
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 566 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 667
>gb|U65585.1|HSU65585 Homo sapiens MHC class II antigen (HLA-DRB1) mRNA, HLA-DRB1*PBL
allele, complete cds
Length = 853
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 416 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 565
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 566 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 667
>gb|U83584.1|HSU83584 Homo sapiens MHC class II antigen HLA-DR mRNA (HLA-DRB1*1302
allele), partial cds
Length = 799
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 250 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 399
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 400 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 501
>gb|U83583.1|HSU83583 Homo sapiens MHC class II antigen HLA-DR mRNA (HLA-DRB1*1301
allele), partial cds
Length = 799
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 250 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 399
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 400 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 501
>gb|M26038.1|HUMMHDRBBA Human MHC class II DR beta mRNA, complete cds
Length = 1157
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 422 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 571
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 572 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 673
>emb|X99895.1|HSDRB1327 H.sapiens mRNA for major histocompatability complex class II,
DRB1*1327
Length = 983
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 383 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 532
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 533 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 634
>gb|BC007920.1|BC007920 Homo sapiens, clone MGC:14111 IMAGE:4309837, mRNA, complete cds
Length = 1227
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 431 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 580
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 581 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 682
>gb|U75316.1|SSU75316 Sus scrofa beta-myosin heavy chain mRNA, complete cds
Length = 5996
Score = 37.0 bits (84), Expect = 3.8
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 334 GGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASG 393
GG G + ++ EGQ RH G+ +GH + P E+HGA + PS PA
Sbjct: 5301 GGAGVQERRGEGQEGHHGCRHDGGGAEEGAGHQRAPGAHEEEHGADH----QGPSAPAGR 5468
Query: 394 RSAE 397
A+
Sbjct: 5469 GRAD 5480
>gb|U95817.1|HSU95817 Human MHC class II antigen HLA-DR-beta 1 mRNA (DRB1*11011 allele),
partial sequence
Length = 714
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 289 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 438
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 439 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 540
>emb|AJ297584.1|HSA297584 Homo sapiens partial mRNA for MHC class II antigen (HLA-DRB1 gene),
DRB1*1403 allele
Length = 793
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 376 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 525
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 526 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 627
>emb|AJ297583.1|HSA297583 Homo sapiens partial mRNA for MHC class II antigen (HLA-DRB1 gene),
DRB1*1402 allele
Length = 793
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 376 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 525
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 526 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 627
>emb|X00699.1|HSHLDRB2 Human mRNA fragment for class II histocompatibility antigen
beta-chain (pII-beta-3)
Length = 1115
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 411 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 560
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 561 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 662
>gb|M27689.1|HUMMHDRW Human MHC class II HLA-DR beta gene (DR3,w18,DQw4-beta-I), 3' end
Length = 714
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 289 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 438
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 439 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 540
>emb|X07273.1|MAMYOBH Hamster mRNA for cardiac beta-myosin heavy chain
Length = 3030
Score = 37.0 bits (84), Expect = 3.8
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Frame = +3
Query: 333 RGGPGGRS---QKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
RGG GG ++ EGQ RH G+ +GH +PP E+HGA + P+
Sbjct: 2334 RGGGGGAGV*ERRGEGQEGHHRCRHDGRGAEEGAGHQRPPGAHEEEHGADH----QGPAA 2501
Query: 390 PASGRSAE 397
PA A+
Sbjct: 2502 PAGRGRAD 2525
>gb|M60061.1|MACMHDRBC Macaca nemestrina MHC class II Mane-DRB3*03 mRNA, complete cds
Length = 1006
Score = 37.0 bits (84), Expect = 3.8
Identities = 30/98 (30%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P + L+C V+ FYP G +EV W R G ++ A +
Sbjct: 401 PKVTVYPA---KTQPLQHHTLLVCSVNGFYP-GSIEVRW-FRNGQEEKAGVAS-----TG 550
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P Q G Y C++ HPS+
Sbjct: 551 LIQNGDWTFQTLVMLETVP----QSGEVYTCQVEHPSV 652
>gb|J00752.1|RATMYHCB Rat cardiac myosin heavy chain insert 5, mRNA
Length = 1346
Score = 37.0 bits (84), Expect = 3.8
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Frame = +3
Query: 333 RGGPGGRS---QKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
RGG GG ++ EGQ RH G+ +GH +PP E+HGA + P+
Sbjct: 648 RGGGGGAGV*ERRGEGQEGHHRCRHDGRGAEEGAGHQRPPGAHEEEHGADH----QGPAA 815
Query: 390 PASGRSAE 397
PA A+
Sbjct: 816 PAGRGRAD 839
>gb|M27635.1|HUMHLAW12R Homo sapiens MHC HLA-DRw12 allele mRNA, beta-1 chain, complete cds
Length = 1139
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 45/98 (45%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 413 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 562
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + P T + G Y C++ HPS+
Sbjct: 563 LIHNGDWTFQTL----VMPETVPRSGEVYTCQVEHPSV 664
>gb|M22048.1|HUMMHDBW3 Human MHC class II HLA-DRw11-beta-I chain (DRw11.3) gene
(DRw11/w11), exon 3
Length = 285
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 8 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 157
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 158 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 259
>emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 on chromosome 6, complete
sequence [Homo sapiens]
Length = 130819
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = -3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 78815 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 78666
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 78665 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 78564
>gb|U23970.1|CMU23970 Agelaius phoeniceus isolate 1.1 MHC class II B mRNA, partial cds
Length = 602
Score = 37.0 bits (84), Expect = 3.8
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ + + PG P LLC V FYP+ ++V W +GQ+ LS
Sbjct: 295 PPSVSISLVPPSSSQPG--PDRLLCSVMDFYPA-AIQVRW------------FQGQQELS 429
Query: 351 A------LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP + G Y+C++ H SL
Sbjct: 430 EHVVATDVVPNGDWTYQLLVLLETPP----RRGLTYSCQVEHVSL 552
>emb|AJ302075.1|HSA302075 Homo sapiens mRNA for MHC class II antigen (HLA-DRB1 gene)
Length = 801
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 376 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 525
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 526 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 627
>emb|AJ297587.1|HSA297587 Homo sapiens mRNA for MHC class II antigen (HLA-DRB1 gene),
DRB1*11041 allele
Length = 801
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 376 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 525
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 526 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 627
>emb|AJ297585.1|HSA297585 Homo sapiens mRNA for MHC class II antigen (HLA-DRB1 gene),
DRB1*1404 allele
Length = 801
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 376 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 525
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 526 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 627
>emb|AJ293696.1|HSA293696 Homo sapiens partial HLA-DRB1 gene for MHC class II antigen, new
DRB1 allele, exon 3
Length = 282
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 6 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 155
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 156 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 257
>gb|M15377.1|HUMHLADB2 Human HLA-DR beta gene, exon 3 from clone lambda-DR4.0
Length = 282
Score = 37.0 bits (84), Expect = 3.8
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 6 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 155
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 156 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 257
>emb|AL137027.17|AL137027 Human DNA sequence from clone RP5-1125N11 on chromosome 1p34.2-35.3,
complete sequence [Homo sapiens]
Length = 101143
Score = 36.6 bits (83), Expect = 4.9
Identities = 35/112 (31%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Frame = +3
Query: 239 AAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMP 298
A W D P PW L P +E L I +G L + K + +L P
Sbjct: 54147 ALWPSDGPTNPWADKSQ--LATSWPLKEALCLVGI-----RGYFRLHEGLIKWRQRTLTP 54305
Query: 299 ATLARAAPGEA--PPELLCLVSHFYPSGGLEVE---------WELRGGPGGR 339
A R APG+A PP V+ P E+ WE+RGGPG R
Sbjct: 54306 A---REAPGDAHWPPASAAWVAKGGPRSLAEIRGRGDSSHGCWEVRGGPGIR 54452
>gb|AY028521.1|AY028520S2 Homo sapiens MHC class II antigen (HLA-DRB1) gene, HLA-DRB1*1201
allele, exon 3 and partial cds
Length = 255
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/97 (29%), Positives = 45/97 (45%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 6 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 155
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
L H+ D + L+ P + G Y C++ HPS
Sbjct: 156 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPS 254
>gb|AY028519.1|AY028518S2 Homo sapiens cell-line MADURA MHC class II antigen (HLA-DRB1) gene,
HLA-DRB1*0801 allele, exon 3 and partial cds
Length = 255
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/97 (29%), Positives = 45/97 (45%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 6 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 155
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
L H+ D + L+ P + G Y C++ HPS
Sbjct: 156 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPS 254
>gb|AY028517.1|AY028516S2 Homo sapiens cell-line BM9 MHC class II antigen (HLA-DRB1) gene,
HLA-DRB1*0801 allele, exon 3 and partial cds
Length = 255
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/97 (29%), Positives = 45/97 (45%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 6 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 155
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
L H+ D + L+ P + G Y C++ HPS
Sbjct: 156 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPS 254
>gb|AY028515.1|AY028514S2 Homo sapiens cell-line BTB MHC class II antigen (HLA-DRB1) gene,
HLA-DRB1*0801 allele, exon 3 and partial cds
Length = 255
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/97 (29%), Positives = 45/97 (45%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 6 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 155
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
L H+ D + L+ P + G Y C++ HPS
Sbjct: 156 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPS 254
>gb|AF316619.1|AF315825S2 Homo sapiens MHC class II antigen (HLA-DRB1) gene, HLA-DRB1*1207
allele, exon 3 and partial cds
Length = 255
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/97 (29%), Positives = 45/97 (45%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 6 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 155
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
L H+ D + L+ P + G Y C++ HPS
Sbjct: 156 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPS 254
>gb|AF335320.1|AF335319S2 Homo sapiens MHC class II antigen (HLA-DRB1) gene, HLA-DRB1*0319
allele, exon 3 and partial cds
Length = 255
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/97 (29%), Positives = 45/97 (45%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 6 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 155
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
L H+ D + L+ P + G Y C++ HPS
Sbjct: 156 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPS 254
>gb|J03011.1|HUMIGLCB8 Homo sapiens immunoglobulin lambda light chain C6 region (IGLC6)
gene, partial cds
Length = 321
Score = 36.6 bits (83), Expect = 4.9
Identities = 30/115 (26%), Positives = 50/115 (43%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P V+L P + +A L+CL+S FYP G ++V W+ G P + +
Sbjct: 19 PSVTLFPPSSEELQANKAT--LVCLISDFYP-GAVKVAWKADGSPVNTGVET------TT 171
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
S+ + S +L P + H + Y+C++ H G + E T+ A S
Sbjct: 172 PSKQSNNKYAASSYLSLTPEQWKSHRS-YSCQVTH-----EGSTVEKTVAPAECS 318
>gb|AF084933.1|AF084933 Rattus norvegicus Class II MHC RT1.D(n) beta chain precursor
(RT1.D(n)) mRNA, complete cds
Length = 1118
Score = 36.6 bits (83), Expect = 4.9
Identities = 31/103 (30%), Positives = 48/103 (46%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G ++ + +
Sbjct: 374 PKVTVYPS---KTQPLKHHNLLVCSVSDFYP-GSVEVRWFRNG------EEEKDGLVSTG 523
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGR 394
L + D + L L+ P Q G Y C++ HPSL + R
Sbjct: 524 LIPNGDWTFQLLVMLEMVP----QGGEVYTCQVEHPSLTSPVR 640
>gb|AF088908.1|AF088908 Neurospora crassa clock-controlled gene-6 protein (ccg-6) gene,
complete cds
Length = 2101
Score = 36.6 bits (83), Expect = 4.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -1
Query: 335 GPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPP-----PVTTEQHGARYACRIHHPS 388
G GG+ + + S + + G+ S+SG Q P P++T+ Y CRIHHP+
Sbjct: 658 GEGGKGEMESLRERSSVIYRRNWGAFSISGSAQRPKATKGPLSTQDRLGWYPCRIHHPA 482
>gb|AC008687.5| Homo sapiens chromosome 19 clone CTB-60B18, complete sequence
Length = 157633
Score = 36.6 bits (83), Expect = 4.9
Identities = 27/78 (34%), Positives = 34/78 (42%)
Frame = +1
Query: 186 PPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDE 245
PP +A S P P GL+ R+ +GK HL L G+ A +G +
Sbjct: 114817 PPPRQAPRSCRAPPIPLGLDTRKAGIGKWHLFLFLWLLFGGERAGAGQG-ITVG*GQPPR 114993
Query: 246 PWGPWTGNGTFWLPRVQP 263
P G G GTFW P QP
Sbjct: 114994 P-GLGGGTGTFW-PS*QP 115041
>gb|AE005970.1|AE005970 Caulobacter crescentus section 296 of 359 of the complete genome
Length = 12680
Score = 36.6 bits (83), Expect = 4.9
Identities = 36/102 (35%), Positives = 47/102 (45%), Gaps = 10/102 (9%)
Frame = -3
Query: 187 PTSEAASSLAPGPPPFGLEWRR--QHLGKGHLL--LAATPGLNG-QMPAAQEGAVAFAAW 241
P + AAS+ AP PPPF + +R + LG+ LL L NG + GA A
Sbjct: 8340 PVAPAASAAAPEPPPFNIYAKRDEERLGEAELLKELGQPNARNGPTLTLKFNGANALVVT 8161
Query: 242 DDDEPWGPWTGNGTFWLPR---VQPFQEGT--YLATIHLPYL 278
DDDE + T F LP VQ E T YL+ P++
Sbjct: 8160 DDDETYSLLT--NVFQLPTDNGVQTVYEVTTDYLSASGGPFI 8041
>gb|S76136.1|S76136 Mane-DRB*04=class II major histocompatibility complex [Macaca
nemestrina=pigtail macaque, B lymphocyte line 86081,
mRNA, 1142 nt]
Length = 1142
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/98 (29%), Positives = 45/98 (45%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P + L+C V+ FYP G +EV W G Q+ + +
Sbjct: 396 PKVTVYPA---KTQPLQHHTLLVCSVNGFYP-GSIEVRWFRNG------QEEKAGVVSTG 545
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P Q G Y C++ HPS+
Sbjct: 546 LIQNGDWTFQTLVMLETVP----QSGEVYTCQVEHPSV 647
>gb|M15561.1|RATMHHBC Rat MHC class II RT1.B-beta2 gene, exon 1
Length = 558
Score = 36.6 bits (83), Expect = 4.9
Identities = 33/107 (30%), Positives = 48/107 (44%)
Frame = +3
Query: 284 LELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKA 343
L L + PP+V++ P R + LLC V+ FYP G + V W R G RS
Sbjct: 51 LSLLLLVPPEVTVYPE---RTPLLQQHNLLLCSVTDFYP-GDISVRW-FRNGQEERSGVM 215
Query: 344 EGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLP 390
+ L + D + + L+ P + G Y+C + HPSLP
Sbjct: 216 S-----TGLLRNGDWTFQTTVMLEMIP----ELGDVYSCLVEHPSLP 329
>gb|M60062.1|MACMHDRBD Macaca nemestrina MHC class II Mane-DRB4*04 mRNA, complete cds
Length = 1142
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/98 (29%), Positives = 45/98 (45%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P + L+C V+ FYP G +EV W G Q+ + +
Sbjct: 396 PKVTVYPA---KTQPLQHHTLLVCSVNGFYP-GSIEVRWFRNG------QEEKAGVVSTG 545
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P Q G Y C++ HPS+
Sbjct: 546 LIQNGDWTFQTLVMLETVP----QSGEVYTCQVEHPSV 647
>gb|M30161.1|MUSMHEBA02 Mouse MHC class II E-beta 2 gene, exon 3
Length = 573
Score = 36.6 bits (83), Expect = 4.9
Identities = 31/98 (31%), Positives = 43/98 (43%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ PA + P E L+C V+ FYP G +EV W G + G
Sbjct: 102 PKVTVYPA---KTQPLEHHNLLVCSVNDFYP-GSIEVRWFRNGEEEKTGVVSTG------ 251
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P Q G Y C++ HPSL
Sbjct: 252 LIQNGDWTYQTLLMLEMVP----QGGEVYTCQVEHPSL 353
>gb|U23965.1|ACU23965 Aphelocoma coerulescens isolate 3.5 MHC class II B mRNA, partial
cds
Length = 599
Score = 36.6 bits (83), Expect = 4.9
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYP+ ++V W +G Q+ G +
Sbjct: 295 PPSVSI---SLVPSSSQPSPGRLLCSVMDFYPA-EIQVRW-FQG-----QQELSGHVVAT 444
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP Q G Y C++ H SL
Sbjct: 445 DIVPNGDWTYQLLVLLEIPP----QLGVSYTCQVEHVSL 549
>gb|U23961.1|ACU23961 Aphelocoma coerulescens isolate 3.1 MHC class II B mRNA, partial
cds
Length = 599
Score = 36.6 bits (83), Expect = 4.9
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYP+ ++V W +G Q+ G +
Sbjct: 295 PPSVSI---SLVPSSSQPSPGRLLCSVMDFYPA-EIQVRW-FQG-----QQELSGHVVAT 444
Query: 351 ALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP Q G Y C++ H SL
Sbjct: 445 DIVPNGDWTYQLLVLLEIPP----QLGVSYTCQVEHVSL 549
>gb|AC013451.8|AC013451 Homo sapiens chromosome 14 clone CTD-2207P18 map 14q24.3, complete
sequence
Length = 111234
Score = 36.6 bits (83), Expect = 4.9
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 68 VHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNC 115
VH PA L F +PR +PAP C + +P PA A TP C
Sbjct: 97499 VHPPAPTLH--FPTFPRTSPAPKCLQYKLLPAPAQAMSLGSPTPKLQC 97636
>gb|AF030997.1|AF030997 Agelaius phoeniceus MHC class II B (Agph-DAB1) gene, exons 1, 2, 3,
4, and 5, and partial cds
Length = 2857
Score = 36.6 bits (83), Expect = 4.9
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = +3
Query: 284 LELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKA 343
L L++ PP VS+ + PG P L+C V FYP+ ++V W
Sbjct: 1722 LSLSLPVPPSVSISLVPPLESQPG--PGRLICSVMDFYPA-AIQVRW------------F 1856
Query: 344 EGQRWLSA------LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+GQ+ LS + + D + L L+ PP + G Y C++ H SL
Sbjct: 1857 QGQQELSEHVVATDVVPNGDWTYQLLVLLETPP----RRGLTYRCQVEHVSL 2000
>gb|U23971.1|CMU23971 Agelaius phoeniceus isolate 1.2 MHC class II B mRNA, partial cds
Length = 602
Score = 36.6 bits (83), Expect = 4.9
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ + + PG P LLC V FYP+ ++V W +GQ+ LS
Sbjct: 295 PPSVSISLVPPSSSQPG--PGRLLCSVMDFYPA-AIQVRW------------FQGQQELS 429
Query: 351 A------LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP + G Y+C++ H SL
Sbjct: 430 EHVVATDVVPNGDWTYQLLVLLETPP----RRGLTYSCQVEHVSL 552
>gb|U23967.1|ACU23967 Agelaius phoeniceus isolate 1.3 MHC class II B mRNA, partial cds
Length = 602
Score = 36.6 bits (83), Expect = 4.9
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ + + PG P LLC V FYP+ ++V W +GQ+ LS
Sbjct: 295 PPSVSISLVPPSSSQPG--PGRLLCSVMDFYPA-AIQVRW------------FQGQQELS 429
Query: 351 A------LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP + G Y+C++ H SL
Sbjct: 430 EHVVATNVVPNGDWTYQLLVLLETPP----RRGLTYSCQVEHVSL 552
>emb|AJ297582.1|HSA297582 Homo sapiens mRNA for MHC class II antigen (HLA-DRB1 gene),
DRB1*14011 allele
Length = 801
Score = 36.6 bits (83), Expect = 4.9
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 376 PKVTVYPS---KTQPLQHYNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 525
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 526 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 627
>dbj|AK056808.1|AK056808 Homo sapiens cDNA FLJ32246 fis, clone PROST1000097, highly similar to
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA
Length = 3071
Score = 36.6 bits (83), Expect = 4.9
Identities = 27/78 (34%), Positives = 34/78 (42%)
Frame = +3
Query: 186 PPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDE 245
PP +A S P P GL+ R+ +GK HL L G+ A +G +
Sbjct: 948 PPPRQAPRSCRAPPIPLGLDTRKAGIGKWHLFLFLWLLFGGERAGAGQG-ITVG*GQPPR 1124
Query: 246 PWGPWTGNGTFWLPRVQP 263
P G G GTFW P QP
Sbjct: 1125 P-GLGGGTGTFW-PS*QP 1172
>gb|AF170972.1|AF170972 Agelaius phoeniceus cosmid 10, complete sequence
Length = 38786
Score = 36.2 bits (82), Expect = 6.4
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Frame = +1
Query: 275 LPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRG 334
+P ++L L++ PP +S+ + + PG P LLC V FYP+ ++V W
Sbjct: 27808 IPVCPCSLSLSLSLPVPPNMSISLVPPSSSQPG--PGRLLCSVMDFYPA-AIQVSW---- 27966
Query: 335 GPGGRSQKAEGQRWLSA------LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388
+GQ+ LS + + D + L L+ PP + Y+C++ H S
Sbjct: 27967 --------FQGQQELSEHVVATDVVPNGDWTYQLLVLLETPP----RRELTYSCQVEHVS 28110
Query: 389 L 389
L
Sbjct: 28111 L 28113
>emb|X99062.1|GGTNY G.gallus mRNA for tenascin-Y
Length = 6349
Score = 36.2 bits (82), Expect = 6.4
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -2
Query: 186 PPTSEAASSLAPGPPPFGLEWRRQHLGKGH----LLLAATPGLNGQMPAAQEGAVAFAAW 241
PPT A+ P PPP L RR G+G LL + P ++PA + GA A +W
Sbjct: 327 PPTPVPAA--VPAPPPAPLPHRRAPGGRGEDRGMLLHSPVP---SEVPAPEAGAAALGSW 163
Query: 242 ---DDDEPWGPWTGNGT 255
+ + GP T GT
Sbjct: 162 SCGEGTDGSGPGTSQGT 112
Score = 35.8 bits (81), Expect = 8.4
Identities = 27/80 (33%), Positives = 36/80 (44%), Gaps = 7/80 (8%)
Frame = -1
Query: 183 AYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGH----LLLAATPGLNGQMPAAQEGAVAF 238
A +PP A P PPP L RR G+G LL + P ++PA + GA A
Sbjct: 688 ALLPPVPAAV----PAPPPAPLPHRRAPGGRGEDRGMLLHSPVP---SEVPAPEAGAAAL 530
Query: 239 AAW---DDDEPWGPWTGNGT 255
+W + + GP T GT
Sbjct: 529 GSWSCGEGTDGSGPGTSQGT 470
>emb|AJ318021.1|HSA318021 Homo sapiens mRNA for immunoglobulin lambda-3 surrogate light
chain, 3 exon form, 122 bp second exon
Length = 1056
Score = 36.2 bits (82), Expect = 6.4
Identities = 37/134 (27%), Positives = 57/134 (41%), Gaps = 6/134 (4%)
Frame = +2
Query: 259 PRVQPFQEGTYLATIHLPYLQGQVTLELAVYKP---PKVSLMPATLARAAPGEAPPELLC 315
PR P G + L Y+ G T + +P P V+L P + +A L+C
Sbjct: 518 PRCWP--RGFWSEPQSLCYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKAT--LVC 685
Query: 316 LVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVT 372
L+S FYP G + V W+ G P G + K Q S+ + S +L P
Sbjct: 686 LISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ---------SNNKYAASSYLSLTPEQ 835
Query: 373 TEQHGARYACRIHH 386
+ H + Y+C++ H
Sbjct: 836 WKSHRS-YSCQVTH 874
>ref|NM_005529.2| Homo sapiens heparan sulfate proteoglycan 2 (perlecan) (HSPG2), mRNA
Length = 13793
Score = 36.2 bits (82), Expect = 6.4
Identities = 40/161 (24%), Positives = 59/161 (35%), Gaps = 2/161 (1%)
Frame = +2
Query: 251 TGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAP 310
T T +P + G YL P Q +++ V S P + ++P
Sbjct: 6059 TDIATLLIPAITTADAGFYLCVATSPAGTAQARIQVVVLSASDASQPPVKIESSSPSVTE 6238
Query: 311 PELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPP 370
+ L L S +V W RGG +L HH+ S L+ P
Sbjct: 6239 GQTLDLNCVVAGSAHAQVTWYRRGG---------------SLPHHTQVHGS---RLRLPQ 6364
Query: 371 VTTEQHGARYACRIHHPSLPASGRSAEVTLEV--AGLSGPS 409
V+ G Y CR+ + S P + A +T+ V SGPS
Sbjct: 6365 VSPADSG-EYVCRVENGSGP---KEASITVSVLHGTHSGPS 6475
>emb|X62515.1|HSBMHSP H.sapiens mRNA for basement membrane heparan sulfate proteoglycan
Length = 13793
Score = 36.2 bits (82), Expect = 6.4
Identities = 40/161 (24%), Positives = 59/161 (35%), Gaps = 2/161 (1%)
Frame = +2
Query: 251 TGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAP 310
T T +P + G YL P Q +++ V S P + ++P
Sbjct: 6059 TDIATLLIPAITTADAGFYLCVATSPAGTAQARIQVVVLSASDASQPPVKIESSSPSVTE 6238
Query: 311 PELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPP 370
+ L L S +V W RGG +L HH+ S L+ P
Sbjct: 6239 GQTLDLNCVVAGSAHAQVTWYRRGG---------------SLPHHTQVHGS---RLRLPQ 6364
Query: 371 VTTEQHGARYACRIHHPSLPASGRSAEVTLEV--AGLSGPS 409
V+ G Y CR+ + S P + A +T+ V SGPS
Sbjct: 6365 VSPADSG-EYVCRVENGSGP---KEASITVSVLHGTHSGPS 6475
>gb|J00751.1|RATMYHCA Rat cardiac myosin heavy chain insert 21/26, mRNA
Length = 1343
Score = 36.2 bits (82), Expect = 6.4
Identities = 19/49 (38%), Positives = 25/49 (50%), Gaps = 3/49 (6%)
Frame = +3
Query: 333 RGGPGGRS---QKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGA 378
RGG GG ++ EGQ RH G+ +GH +PP E+HGA
Sbjct: 690 RGGGGGAGV*ERRGEGQEGHHRCRHDGRGAEEGAGHQRPPRAHEEEHGA 836
>emb|AJ318022.1|HSA318022 Homo sapiens mRNA for immunoglobulin lambda-3 surrogate light
chain, 3 exon form, 119 bp second exon
Length = 1053
Score = 36.2 bits (82), Expect = 6.4
Identities = 37/134 (27%), Positives = 57/134 (41%), Gaps = 6/134 (4%)
Frame = +2
Query: 259 PRVQPFQEGTYLATIHLPYLQGQVTLELAVYKP---PKVSLMPATLARAAPGEAPPELLC 315
PR P G + L Y+ G T + +P P V+L P + +A L+C
Sbjct: 515 PRCWP--RGFWSEPQSLCYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKAT--LVC 682
Query: 316 LVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVT 372
L+S FYP G + V W+ G P G + K Q S+ + S +L P
Sbjct: 683 LISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ---------SNNKYAASSYLSLTPEQ 832
Query: 373 TEQHGARYACRIHH 386
+ H + Y+C++ H
Sbjct: 833 WKSHRS-YSCQVTH 871
>dbj|AB027448.1|AB027448 Homo sapiens mRNA for anti HBs antibody light-chain Fab fragment,
partial cds, clone:308-19L
Length = 651
Score = 36.2 bits (82), Expect = 6.4
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Frame = +1
Query: 277 YLQGQVTLELAVYKP---PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELR 333
Y+ G T + +P P V+L P + +A L+CL+S FYP G + V W+
Sbjct: 298 YVFGSGTTVTVLGQPKANPTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKAD 468
Query: 334 GGP---GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
G P G + K Q S+ + S +L P + H + Y+C++ H
Sbjct: 469 GSPVKAGVETTKPSKQ---------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 606
>gb|AF464050.1| Sus scrofa MHC class II antigen (SLA-DRB) mRNA, SLA-DRB*m allele,
complete cds
Length = 801
Score = 36.2 bits (82), Expect = 6.4
Identities = 30/98 (30%), Positives = 44/98 (44%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C V+ FYP G +EV W G + G
Sbjct: 376 PRVTVYPA---KTQPLQHHNLLVCSVTGFYP-GHVEVRWFRNGQEEAAGVVSTG------ 525
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P Q G Y+CR+ HPSL
Sbjct: 526 LIPNGDWTFQTMVMLETVP----QSGEVYSCRVEHPSL 627
>emb|AL096768.7|HSJ858B16 Human DNA sequence from clone RP5-858B16 on chromosome 22 Contains the
KIAA0542 gene and the PISD gene for phosphatidylserine
decarboxylase (PSSC, EC 4.1.1.65) . Contains ESTs, GSSs
and a putative CpG island, complete sequence [Homo
sapiens]
Length = 36676
Score = 36.2 bits (82), Expect = 6.4
Identities = 34/119 (28%), Positives = 48/119 (39%), Gaps = 1/119 (0%)
Frame = +3
Query: 241 WDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSL-MPA 299
W PWG W+ T P QP + + LP G ++ L PP L
Sbjct: 21627 WQAASPWG*WSPASTGCAPSSQPHSD----SGAWLPLASGLISQAL----PPASQLGRTG 21782
Query: 300 TLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDG 358
+ AA GE+ P L + PS GL+ + PG R +A + L++L S G
Sbjct: 21783 NVGAAARGESGPAAGHLSAAAAPSKGLQAQ-----APGPRKGRAGCRACLTSLSLRSPG 21944
>dbj|AP004532.1|AP004532 Lotus japonicus genomic DNA, chromosome 1, clone:LjT09L22, TM0063,
complete sequence
Length = 89936
Score = 35.8 bits (81), Expect = 8.4
Identities = 35/124 (28%), Positives = 47/124 (37%)
Frame = +2
Query: 188 TSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPW 247
++ AAS+L P PPP+ RR H HL+ A A G A A P
Sbjct: 68726 STAAASALPPPPPPY----RRHHHRCHHLITTAATTTGVAATAITTGVAATAITTALPP- 68890
Query: 248 GPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPG 307
P T P+ P++ + H G T L+ PP P+T+A P
Sbjct: 68891 -PLT-------PQPSPYRRHHHNRHHHSIATTGTTTTTLSPPPPPPPLPPPSTVAATLPQ 69046
Query: 308 EAPP 311
PP
Sbjct: 69047 LPPP 69058
>gb|AF464037.1| Sus scrofa MHC class II antigen (SLA-DRB) mRNA, SLA-DRB*mel15
allele, partial cds
Length = 858
Score = 35.8 bits (81), Expect = 8.4
Identities = 30/98 (30%), Positives = 43/98 (43%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C V+ FYP G +EV W G + G
Sbjct: 369 PRVTVYPA---KTQPLQHHNLLVCSVTGFYP-GHVEVRWFRNGQEEAAGVVSTG------ 518
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P Q G Y CR+ HPSL
Sbjct: 519 LIPNGDWTFQTMVMLETVP----QSGEVYTCRVEHPSL 620
>gb|M13151.1|BOVMIS Bovine Muellerian inhibiting substance mRNA, complete cds
Length = 2016
Score = 35.8 bits (81), Expect = 8.4
Identities = 32/95 (33%), Positives = 40/95 (41%), Gaps = 6/95 (6%)
Frame = +1
Query: 252 GNGTFWLPRVQPFQE------GTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAA 305
GNG LP +Q Q G +L +HL + + T L +PP
Sbjct: 568 GNGQPVLPHLQRLQAWLGEPGGRWLVVLHLEEVTWEPTPLLRFQEPP------------P 711
Query: 306 PGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRS 340
G +PPEL LV YP GLEV G PG +S
Sbjct: 712 GGASPPELALLV--VYPGPGLEVTVTGAGLPGTQS 810
>emb|Z11521.1|OAMHCDRB3 O.aries gene for MHC class-II DRB (OLA-DRB) beta chain, exon 3
Length = 425
Score = 35.8 bits (81), Expect = 8.4
Identities = 35/132 (26%), Positives = 58/132 (43%)
Frame = +1
Query: 275 LPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRG 334
L L ++ ++ P V++ PA + P + L+C V+ FYP G +EV W G
Sbjct: 46 LTLLSSLISSTFSLLVEPIVTVYPA---KTQPLQHHNLLVCSVNGFYP-GHIEVRWFRNG 213
Query: 335 GPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGR 394
+ E + L + D + L+ P Q G Y C++ HPS R
Sbjct: 214 ------HEEEAGVISTGLIQNGDWTFQTMVMLETVP----QSGEVYTCQVDHPS-----R 348
Query: 395 SAEVTLEVAGLS 406
++ +T+E + LS
Sbjct: 349 TSPITVEWSELS 384
>emb|Z49880.1|OADOBB12 O.aries MHC class ll DOB gene (beta 1 and beta 2 domains)
Length = 2251
Score = 35.8 bits (81), Expect = 8.4
Identities = 26/79 (32%), Positives = 38/79 (47%)
Frame = +2
Query: 313 LLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVT 372
LLCLV+ FYP G ++V W G ++ EG +R+ G + + P
Sbjct: 1031 LLCLVTGFYP-GDIKVTWFRNG-----QEQREGVMSTGLIRN---GDWTFQTTVMLP--M 1177
Query: 373 TEQHGARYACRIHHPSLPA 391
T + G Y C + HPSLP+
Sbjct: 1178 TPELGEVYTCLVDHPSLPS 1234
>gb|BC012876.1|BC012876 Homo sapiens, clone MGC:17259 IMAGE:4149333, mRNA, complete cds
Length = 927
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 462 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 626
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 627 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 716
>gb|BC007782.1|BC007782 Homo sapiens, clone MGC:12849 IMAGE:4308973, mRNA, complete cds
Length = 1154
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 424 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 588
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 589 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 678
>gb|J00252.1|HUMIGLCB1 Homo sapiens immunoglobulin lambda light chain C region (IGLC1)
gene, partial cds
Length = 315
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 13 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 177
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 178 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 267
>emb|Y09922.1|MMSEZ6EX1 M.musculus flanking region of exon 1 of SEZ-6 gene including
promoter sequence
Length = 2279
Score = 35.8 bits (81), Expect = 8.4
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +3
Query: 245 EPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARA 304
+P G G+ PR+ PF G LA HLP G L+ PP+ + L R+
Sbjct: 870 DPAGRGAGSTGGKPPRLPPFAPGRDLAFNHLPGSNGISLLQFITPPPPRTHALSRALPRS 1049
Query: 305 APG 307
PG
Sbjct: 1050TPG 1058
>dbj|D87023.1|D87023 Homo sapiens immunoglobulin lambda gene locus DNA, clone:9C5
Length = 40392
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 20991 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 21155
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 21156 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 21245
>gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complete sequence [Homo sapiens]
Length = 40203
Score = 35.8 bits (81), Expect = 8.4
Identities = 18/38 (47%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Frame = -2
Query: 234 GAVAFAAWDDDEPWGPWTGNG---TFWLPRVQPFQEGT 268
G V FAA +PW PW G G WL VQP ++GT
Sbjct: 21662 GTVCFAAL---QPWAPWPGAGWHARLWLGWVQPLEQGT 21558
>emb|X57819.1|HSIGVL029 Human rearranged immunoglobulin lambda light chain mRNA
Length = 819
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 407 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 571
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 572 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 661
>emb|AJ319670.1|HSA319670 Homo sapiens germline mRNA for immunoglobulin lambda-1 chain
constant region, Daudi cell line
Length = 885
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 449 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 613
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 614 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 703
>gb|U23972.1|ACU23972 Aphelocoma coerulescens isolate 1.1 MHC class II B mRNA, partial
cds
Length = 599
Score = 35.8 bits (81), Expect = 8.4
Identities = 31/107 (28%), Positives = 52/107 (47%)
Frame = +1
Query: 283 TLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQK 342
++E V +SL+P++ ++ +PG LLC V FYP+ ++V W +G Q+
Sbjct: 277 SVERRVLPSVSISLVPSS-SQPSPGR----LLCSVMDFYPA-EIQVRW-FQG-----QQE 420
Query: 343 AEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
G + + + D + L L+ PP Q G Y C++ H SL
Sbjct: 421 LSGHVVATDIVPNGDWTYQLLVLLEIPP----QRGVSYTCQVEHVSL 549
>gb|U23958.1|ACU23958 Aphelocoma coerulescens isolate 2.2 MHC class II B mRNA, partial
cds
Length = 599
Score = 35.8 bits (81), Expect = 8.4
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Frame = +1
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLS 350
PP VS+ +L ++ +P LLC V FYP+ ++V W +GQ+ LS
Sbjct: 295 PPSVSI---SLVPSSSQPSPGRLLCSVMDFYPA-EIQVRW------------FQGQQELS 426
Query: 351 A------LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + D + L L+ PP Q G Y C++ H SL
Sbjct: 427 VHVVATDIVPNGDWTYQLLVLLEIPP----QRGVSYTCQVEHVSL 549
>gb|M17378.1|HUMMHDRBL Human MHC class II HLA-DR-beta mRNA (DR2), partial cds
Length = 714
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 46/98 (46%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP+ +EV W L G Q+ + +
Sbjct: 289 PKVTVYPS---KTQPLQHHNLLVCSVSGFYPAS-IEVRWFLNG------QEEKAGMVSTG 438
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 439 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 540
>emb|AL162417.23|AL162417 Human DNA sequence from clone RP11-326L24 on chromosome 9q34.13-34.3,
complete sequence [Homo sapiens]
Length = 152863
Score = 35.8 bits (81), Expect = 8.4
Identities = 18/38 (47%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Frame = -2
Query: 234 GAVAFAAWDDDEPWGPWTGNG---TFWLPRVQPFQEGT 268
G V FAA +PW PW G G WL VQP ++GT
Sbjct: 120786 GTVCFAAL---QPWAPWPGAGWHARLWLGWVQPLEQGT 120682
>emb|X91846.1|SSMYHCC Sus scrofa mRNA for cardiac myosin heavy chain (pAZMY7)
Length = 937
Score = 35.8 bits (81), Expect = 8.4
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 334 GGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASG 393
GG G + ++ EGQ RH G+ +GH + P E+HGA + P+ PA
Sbjct: 233 GGAGVQERRGEGQEGHHGCRHDGGGAEEGAGHQRAPGAHEEEHGADH----QGPAAPAGR 400
Query: 394 RSAE 397
A+
Sbjct: 401 GRAD 412
>dbj|AK057174.1|AK057174 Homo sapiens cDNA FLJ32612 fis, clone STOMA2000088, highly similar to
IG LAMBDA CHAIN C REGIONS
Length = 2423
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 1984 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 2148
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 2149 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 2238
>dbj|AB053226.1|AB053226 Sus scrofa MyHC-slow mRNA for myosin heavy chain slow isoform,
complete cds
Length = 5938
Score = 35.8 bits (81), Expect = 8.4
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 334 GGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASG 393
GG G + ++ EGQ RH G+ +GH + P E+HGA + P+ PA
Sbjct: 5246 GGAGVQERRGEGQEGHHGCRHDGGGAEEGAGHQRAPGAHEEEHGADH----QGPAAPAGR 5413
Query: 394 RSAE 397
A+
Sbjct: 5414 GRAD 5425
>gb|M12995.1|HAMMYCA Hamster cardiac alpha-myosin heavy chain mRNA, 3' end
Length = 987
Score = 35.8 bits (81), Expect = 8.4
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +3
Query: 333 RGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPAS 392
RGG G EGQ RH G+ +GH +PP E+HGA + P+ PA
Sbjct: 345 RGGAGV*ECGGEGQESHHRCRHDGGGAEEGAGHQRPPGAHEEEHGADH----QGPATPA- 509
Query: 393 GRS 395
GRS
Sbjct: 510 GRS 518
>gb|M20531.1|RABC2ATP1 Rabbit fast twitch muscle Ca2+ ATPase gene, 5' end
Length = 975
Score = 35.8 bits (81), Expect = 8.4
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +1
Query: 196 APGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNG 254
A G L W R G H L+ + GL G PAA G A+W +D+P G G G
Sbjct: 544 AEGSASQSLIWGRGEPGPPHSLIKTSWGLGG-WPAATSGTGVRASWREDKPGGGRRGKG 717
>gb|AF464051.1| Sus scrofa MHC class II antigen (SLA-DRB) mRNA, SLA-DRB*n allele,
complete cds
Length = 801
Score = 35.8 bits (81), Expect = 8.4
Identities = 30/98 (30%), Positives = 43/98 (43%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C V+ FYP G +EV W G + G
Sbjct: 376 PRVTVYPA---KTQPLQHHNLLVCSVTGFYP-GHVEVRWFRNGQEEAAGVVSTG------ 525
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P Q G Y CR+ HPSL
Sbjct: 526 LIPNGDWTFQTMVMLETVP----QSGEVYTCRVEHPSL 627
>ref|XM_086822.1| Homo sapiens hypothetical gene supported by AK057174 (LOC150239),
mRNA
Length = 2047
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +3
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP---GGRSQKAEGQRW 348
P V+L P + +A L+CL+S FYP G + V W+ G P G + K Q
Sbjct: 1608 PTVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADGSPVKAGVETTKPSKQ-- 1772
Query: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
S+ + S +L P + H + Y+C++ H
Sbjct: 1773 -------SNNKYAASSYLSLTPEQWKSHRS-YSCQVTH 1862
>gb|AE000082.1|AE000082 Rhizobium sp. NGR234 plasmid pNGR234a, section 19 of 46 of the
complete plasmid sequence
Length = 11335
Score = 35.8 bits (81), Expect = 8.4
Identities = 23/63 (36%), Positives = 26/63 (40%)
Frame = +3
Query: 332 LRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPA 391
LR P R+ + W + LRH Q PP ARY CR HP LP
Sbjct: 6597 LRSCPARRAFRPATDPWPARLRHPR----------QTPPAPVRAR-ARYGCRPAHPGLPG 6743
Query: 392 SGR 394
SGR
Sbjct: 6744 SGR 6752
>gb|L38565.1|HSL38565 Human clone tat107Fab, immunoglobulin lambda light chain, V4-J-C1
region, partial cds
Length = 600
Score = 35.8 bits (81), Expect = 8.4
Identities = 25/95 (26%), Positives = 41/95 (42%)
Frame = +1
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P V+L P + +A L+CL+S FYP G + V W+ P + +
Sbjct: 331 PSVTLFPPSSEELQANKAT--LVCLISDFYP-GAVTVAWKADSSPVKVGVET------TT 483
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH 386
+HS + S +L P + H Y+C++ H
Sbjct: 484 PSNHSINMFAGSSYLSLTPEQWKSHRKSYSCQVTH 588
>gb|AC002319.1|AC002319 Homo sapiens chromosome 9q34, clone 70C11, complete sequence
Length = 46305
Score = 35.8 bits (81), Expect = 8.4
Identities = 18/38 (47%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Frame = +1
Query: 234 GAVAFAAWDDDEPWGPWTGNG---TFWLPRVQPFQEGT 268
G V FAA +PW PW G G WL VQP ++GT
Sbjct: 43201 GTVCFAAL---QPWAPWPGAGWHARLWLGWVQPLEQGT 43305
>gb|AC073324.6|AC073324 Homo sapiens BAC clone RP11-339F13 from 7, complete sequence
Length = 125253
Score = 35.8 bits (81), Expect = 8.4
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Frame = +3
Query: 290 KPPKV----SLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEG 345
+PP++ +L PAT G PP + PS G WE+R + G
Sbjct: 124209 RPPRLRSEETLCPATAPSEK*GAPPPGSRPV*EVRSPSTGSHPVWEVRS-VSAQQPPRPG 124385
Query: 346 QRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEV 398
+RW SA + S G + PPP + G R+ + P+ PA+ EV
Sbjct: 124386 ERWGSAPARPAAPSRREVGGVSPPPGQPPRRGGRWGGQ--PPARPAAPSGREV 124538
>emb|AL160278.24| Human DNA sequence from clone RP11-574G7 on chromosome 9, complete
sequence [Homo sapiens]
Length = 215399
Score = 35.8 bits (81), Expect = 8.4
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 17/90 (18%)
Frame = +1
Query: 322 PSGGLEVEWE-LRGGPGGRSQKAEGQRWLSA-------LRHHSDGSVSLSGHLQP----- 368
P GG WE + G R A G RWL R SD S G+ +P
Sbjct: 167473 PPGGPGARWERIVWADGRREAGAGGGRWLGGRVREGRRARPRSDARASFPGNRRPASPPE 167652
Query: 369 ----PPVTTEQHGARYACRIHHPSLPASGR 394
PP + R A R H P P S R
Sbjct: 167653 PPPPPPPARLPYAVRLAARAHSPGCPRSER 167742
>emb|AL591174.13|AL591174 Mouse DNA sequence from clone RP23-271B20 on chromosome 11, complete
sequence [Mus musculus]
Length = 205379
Score = 27.7 bits (60), Expect(2) = 9.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -3
Query: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWEL---RGGPG-GRSQKA 343
PPK++L P + P L+C F L+ +W + + GPG GR QKA
Sbjct: 54495 PPKLALCKTVKGEPVPKASVPALVCPSLVF-----LDTDWAMGPRKRGPGWGRRQKA 54340
Score = 26.2 bits (56), Expect(2) = 9.0
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Frame = -2
Query: 239 AAWDDDEPWGP---------WTGNGTFWLPRVQPF 264
+ W PWGP W+G+ WLP PF
Sbjct: 54625 SCWARAVPWGPFSLLSSLL*WSGSRGQWLPARGPF 54521
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 19, 2002 12:00 AM
Number of letters in database: 587,334,133
Number of sequences in database: 1,164,257
Lambda K H
0.317 0.134 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,879,243,182
Number of Sequences: 1164257
Number of extensions: 56025458
Number of successful extensions: 409915
Number of sequences better than 10.0: 400
Number of HSP's better than 10.0 without gapping: 105773
Number of HSP's successfully gapped in prelim test: 23673
Number of HSP's that attempted gapping in prelim test: 173041
Number of HSP's gapped (non-prelim): 309630
length of query: 448
length of database: 1,627,433,809
effective HSP length: 138
effective length of query: 310
effective length of database: 1,466,766,343
effective search space: 454697566330
effective search space used: 454697566330
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)