TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(348 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,164,257 sequences; 587,334,133 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_001708.1| Homo sapiens opsin 1 (cone pigments), shor... 690 0.0
gb|AF158977.1|AF158977 Macaca fascicularis SW opsin mRNA, c... 657 0.0
gb|L76226.1|IOPBCP Miopithecus talapoin blue cone pigment gene 638 0.0
gb|L76201.1|CALBCP Callithrix jacchus blue cone pigment gene 619 e-176
gb|U63972.1|RNU63972 Rattus norvegicus blue cone opsin-like... 605 e-171
gb|AF051163.1|AF051163 Rattus norvegicus blue cone opsin pi... 603 e-171
gb|AF190670.1|AF190670 Mus musculus blue opsin mRNA, comple... 602 e-170
gb|U92557.1|BTU92557 Bos taurus blue cone pigment protein m... 602 e-170
ref|NM_007538.1| Mus musculus opsin 1 (cone pigments), shor... 600 e-170
gb|U49720.1|MMU49720 Mus musculus blue cone pigment mRNA, c... 600 e-170
emb|Y11787.1|MUUVSCO M.undulatus mRNA for UV-sensitive cone... 571 e-161
emb|AJ238856.1|CLI238856 Columba livia mRNA for violet-sens... 568 e-160
gb|AF222331.1|AF222331 Taeniopygia guttata SWS1 opsin mRNA,... 567 e-160
gb|AF074045.1|AF074045 Phelsuma madagascariensis longintinu... 561 e-158
emb|AJ277922.1|SCA277922 Serinus canaria ops1 gene for UV-s... 558 e-157
gb|AY024356.1| Gekko gecko SWS1 opsin mRNA, complete cds 558 e-157
gb|M92039.1|CHKVSCOC Gallus gallus violet sensitive cone op... 557 e-157
gb|AF055458.1|AF055458 Tursiops truncatus short-wavelength ... 555 e-156
dbj|AB052889.1|AB052889 Cynops pyrrhogaster mRNA for Cp-S o... 555 e-156
gb|AF038948.1|AF038948 Ambystoma tigrinum ultraviolet cone ... 555 e-156
emb|AJ277991.1|SHU277991 Spheniscus humboldti partial mRNA ... 548 e-154
gb|U23463.1|XLU23463 Xenopus laevis violet cone opsin mRNA,... 544 e-153
dbj|AB001983.1|AB001983 Rana catesbeiana mRNA for cone pigm... 540 e-152
gb|AY029604.1| Phodopus sungorus uv cone pigment mRNA, part... 468 e-130
gb|AF191219.1|AF191219 Metriaclima zebra putative ultraviol... 427 e-118
dbj|AB001605.1|AB001605 Oryzias latipes mRNA for KFH-V, com... 419 e-115
dbj|D85863.1|CAUUVSEN Carassius auratus mRNA for ultraviole... 412 e-113
gb|AF109373.1|AF109373 Danio rerio ultraviolet-sensitive op... 398 e-109
gb|AF191220.1|AF191220 Dimidiochromis compressiceps putativ... 150 5e-99
gb|AF191223.1|AF191223 Labeotropheus fuelleborni putative u... 156 1e-96
gb|AF191222.1|AF191222 Metriaclima zebra putative ultraviol... 155 3e-96
gb|AF191221.1|AF191221 Oreochromis niloticus putative ultra... 150 2e-93
gb|AF222332.1|AF222332 Taeniopygia guttata SWS2 opsin mRNA,... 339 2e-91
dbj|AB010085.1|AB010085 Rana catesbeiana mRNA for visual pi... 337 1e-90
gb|AF038946.1|AF038946 Ambystoma tigrinum blue cone visual ... 333 1e-89
gb|L11864.1|CRABLU Carassius auratus blue cone opsin mRNA, ... 333 2e-89
gb|M92037.1|CHKBSCOA Gallus gallus blue sensitive cone opsi... 330 1e-88
gb|AF074044.1|AF074044 Phelsuma madagascariensis longintinu... 325 3e-87
gb|AF247129.1|AF247129 Dimidiochromis compressiceps putativ... 323 2e-86
gb|AF317674.1|AF317674 Metriaclima zebra putative blue sens... 322 4e-86
dbj|AB001602.1|AB001602 Oryzias latipes mRNA for KFH-B, com... 322 4e-86
gb|AF222330.1|AF222330 Taeniopygia guttata RH2 opsin mRNA, ... 320 2e-85
gb|M63632.1|LARRHODA Lamprey rhodopsin mRNA, complete cds 319 3e-85
gb|AF109372.1|AF109372 Danio rerio blue-sensitive opsin (bl... 318 3e-85
gb|M92038.1|CHKGSCOB Gallus gallus green sensitive cone ops... 317 1e-84
gb|U36574.1|ATU36574 Ambystoma tigrinum rhodopsin mRNA, com... 317 1e-84
gb|M88178.1|CHKPRA1A Chicken visual pigment (PRA1) gene, co... 317 1e-84
dbj|AB043890.1|AB043890 Cynops pyrrhogaster cp-Rh mRNA for ... 315 3e-84
gb|M92035.1|GECP467A Gekko gekko blue sensitive visual pigm... 315 4e-84
gb|L11865.1|CRAGRN Carassius auratus green cone opsin mRNA,... 313 1e-83
emb|Y17586.1|GME17586 Galeus melastomus mRNA for opsin 311 7e-83
gb|L11866.1|CRAGRNA Carassius auratus green cone opsin mRNA... 311 7e-83
emb|AJ277923.1|SCA277923 Serinus canaria partial mRNA for S... 311 7e-83
gb|AF222329.1|AF222329 Taeniopygia guttata rhodopsin mRNA, ... 310 9e-83
emb|Y18679.1|PMIY18679 Pomatoschistus minutus mRNA for puta... 310 2e-82
gb|AF109370.1|AF109370 Danio rerio green-sensitive opsin 2 ... 310 2e-82
gb|U59922.1|BMU59922 Bufo marinus rhodopsin mRNA, complete cds 310 2e-82
gb|AF021241.1|AF021241 Melopsittacus undulatus green cone o... 309 2e-82
gb|U23802.1|AMU23802 Alligator mississippiensis rhodopsin m... 309 2e-82
gb|U59920.1|RTU59920 Rana temporaria rhodopsin mRNA, comple... 309 3e-82
gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds 307 8e-82
gb|AF109369.1|AF109369 Danio rerio green-sensitive opsin 1 ... 307 8e-82
gb|AF309568.1|AF309568 Spalax ehrenbergi rod visual pigment... 306 1e-81
emb|Y17585.1|SCA85 Scyliorhinus canicula mRNA for opsin 306 2e-81
dbj|AB040148.1|AB040148 Cynops pyrrhogaster mRNA for opsin,... 305 3e-81
gb|S79840.1|S79840 rhodopsin [Rana catesbeiana=bullfrogs, r... 305 5e-81
gb|L07770.1|XELRHODOP Xenopus laevis rhodopsin mRNA, comple... 304 7e-81
gb|AF200433.1|AF200433 Bufo japonicus deep brain photorecep... 303 1e-80
gb|S49004.1|S49004 rhodopsin [Rana pipiens=common leopard f... 303 2e-80
gb|S62229.1|S62229 Xenopus laevis opsin mRNA, complete cds 302 3e-80
gb|L04692.1|XELOPSIN Frog opsin mRNA, complete cds 302 3e-80
gb|AF021239.1| Anas platyrhynchos green cone opsin mRNA, pa... 300 1e-79
gb|AF247130.1|AF247130 Dimidiochromis compressiceps putativ... 300 1e-79
gb|AF021242.1|AF021242 Melopsittacus undulatus rod opsin mR... 300 2e-79
gb|U81514.1|REU81514 Raja erinacea rod opsin (RAERRHO) mRNA... 299 3e-79
ref|NM_000539.2| Homo sapiens rhodopsin (opsin 2, rod pigme... 299 3e-79
gb|U22180.1|RNU22180 Rattus norvegicus opsin gene, complete... 298 4e-79
gb|AF310191.1|AF310191 Synthetic construct inferred ancient... 298 4e-79
ref|NM_033441.1| Rattus norvegicus Rhodopsin (retinitis pig... 298 5e-79
emb|Z46957.1|RNOPS R.norvegicus mRNA for rhodopsin 298 5e-79
emb|AJ277926.1|SCA277926 Serinus canaria partial mRNA for r... 298 6e-79
dbj|AB043817.1|AB043817 Conger myriaster conf gene for fres... 296 1e-78
gb|S76579.1|S76579 opsin [Macaca fascicularis=Old World mon... 296 1e-78
gb|AF055318.1|AF055318 Phoca groenlandica rod opsin mRNA, c... 296 2e-78
gb|AF008947.1|AF008947 Sus scrofa rhodopsin (PIGRHO1) mRNA,... 296 2e-78
gb|U57539.1|MVU57539 Myripristis violacea rhodopsin mRNA, p... 296 2e-78
gb|U21688.1|OCU21688 Oryctolagus cuniculus rhodopsin mRNA, ... 295 3e-78
gb|AF055317.1|AF055317 Phoca vitulina rod opsin mRNA, compl... 295 3e-78
gb|S82619.1|S82619 blue-sensitive rod visual pigment/opsin ... 295 3e-78
gb|BC013125.1|BC013125 Mus musculus, Similar to rhodopsin (... 295 3e-78
gb|L78008.1|ANGDSROD Anguilla anguilla deep-sea rhodopsin m... 295 3e-78
gb|S74449.1|S74449 rhodopsin [Cyprinus carpio=carp, retina,... 295 3e-78
gb|U02475.1|CCRHOD Cyprinus carpio rhodopsin mRNA, complete... 295 3e-78
dbj|AB043818.1|AB043818 Conger myriaster cond mRNA for deep... 295 5e-78
emb|Y14484.1|ZFOPSIN Zeus faber gene encoding opsin 295 5e-78
emb|Y18680.1|MSUY18680 Mullus surmuletus mRNA for putative ... 294 7e-78
emb|AJ249203.1|AJA249203 Anguilla japonica mRNA for deep-se... 294 7e-78
emb|X71380.1|CFOPSIN C.familiaris gene for opsin 294 7e-78
dbj|AB025312.1|AB025312 Danio rerio mRNA for exo-rhodopsin,... 294 9e-78
gb|M12689.1|SYNBOVRDPA Synthetic bovine rhodopsin gene, com... 293 1e-77
dbj|AB062417.1|AB062417 Synthetic construct Bos taurus mRNA... 293 1e-77
gb|M21606.1|BOVOPSA Bovine opsin mRNA, 3' end, clone LR-8 293 1e-77
gb|U57538.1|MBU57538 Myripristis berndti rhodopsin mRNA, pa... 293 1e-77
gb|AF021240.1| Anas platyrhynchos rod opsin mRNA, partial cds 293 2e-77
gb|AF055319.1|AF055319 Trichechus manatus rod opsin mRNA, c... 293 2e-77
gb|AF055314.1|AF055314 Delphinus delphis rod opsin mRNA, co... 293 2e-77
emb|AJ277924.1|SCA277924 Serinus canaria partial mRNA for M... 293 2e-77
gb|AF055316.1|AF055316 Mesoplodon bidens rod opsin mRNA, co... 293 2e-77
emb|Y18678.1|ZOPY18678 Zosterisessor ophiocephalus mRNA for... 290 1e-76
gb|AY036959.1| Salmo salar ultraviolet opsin mRNA, partial cds 290 2e-76
gb|U12328.1|AMU12328 Astyanax mexicanus rhodopsin gene, com... 290 2e-76
emb|Y18675.1|GNIY18675 Gobius niger mRNA for opsin 289 2e-76
dbj|AB001603.1|AB001603 Oryzias latipes mRNA for KFH-G, com... 289 2e-76
gb|L11863.1|CRAROD Carassius auratus rod opsin mRNA, comple... 289 3e-76
gb|U57537.1|SDU57537 Sargocentron diadema rhodopsin mRNA, c... 288 4e-76
gb|U57545.1|STU57545 Sargocentron tiere rhodopsin mRNA, par... 288 4e-76
emb|Z71999.1|CCRHODPSN C.carpio mRNA for rhodopsin 288 4e-76
emb|Y18677.1|SPIY18677 Sardina pilchardus mRNA for opsin 288 4e-76
gb|AF055456.1|AF055456 Tursiops truncatus rod opsin mRNA, c... 288 5e-76
gb|AF226989.1|AF226989 Takifugu rubripes green opsin mRNA, ... 288 6e-76
gb|U57546.1|SXU57546 Sargocentron xantherythrum rhodopsin m... 287 8e-76
gb|U57543.1|SPU57543 Sargocentron punctatissimum rhodopsin ... 287 8e-76
gb|U57540.1|NAU57540 Neoniphon argenteus rhodopsin mRNA, pa... 287 8e-76
gb|U57544.1|SSU57544 Sargocentron spiniferum rhodopsin mRNA... 287 1e-75
emb|AJ249202.1|AJA249202 Anguilla japonica mRNA for fresh w... 287 1e-75
gb|U57542.1|SMU57542 Sargocentron microstoma rhodopsin mRNA... 287 1e-75
gb|U57536.1|NSU57536 Neoniphon sammara rhodopsin mRNA, comp... 287 1e-75
gb|AF055315.1|AF055315 Globicephala melas rod opsin mRNA, c... 286 1e-75
emb|Y18662.1|DANY18662 Diplodus annularis mRNA for opsin 286 1e-75
dbj|AB001606.1|AB001606 Oryzias latipes mRNA for KFH-Rh, co... 286 1e-75
gb|U57541.1|NAU57541 Neoniphon aurolineatus rhodopsin mRNA,... 286 1e-75
gb|AF201471.1|AF201471 Fugu rubripes retinal rod opsin mRNA... 286 1e-75
gb|AF109368.1|AF109368 Danio rerio rhodopsin mRNA, complete... 286 2e-75
gb|AF331797.1|AF331797 Danio rerio light receptor rod opsin... 286 2e-75
gb|U15762.1|GGU15762 Gallus gallus pinopsin mRNA, complete cds 286 2e-75
dbj|AB022881.1|AB022881 Phelsuma madagascariensis longinsul... 285 4e-75
emb|Y18674.1|LPAY18674 Lipophrys pavo mRNA for opsin 285 4e-75
emb|AJ293018.1|TNI293018 Tetraodon nigroviridis rhod gene f... 284 7e-75
emb|Y11147.1|PROPSIN P.reticulata mRNA for opsin 284 7e-75
gb|AF201470.1|AF201470 Salmo salar retinal rod opsin mRNA, ... 284 7e-75
emb|Y18669.1|CLAY18669 Chelon labrosus mRNA for opsin 284 9e-75
emb|Y18672.1|SVUY18672 Solea vulgaris mRNA for opsin 284 9e-75
gb|AF315354.1|AF315354 Astatotilapia burtoni rhodopsin mRNA... 283 2e-74
emb|Y18666.1|MSUY18666 Mullus surmuletus mRNA for opsin 283 2e-74
emb|Y11146.1|GAOPSIN G.affinis mRNA for opsin 283 2e-74
gb|AF201472.1|AF201472 Fugu rubripes brain rod-like opsin m... 283 2e-74
emb|Y18673.1|DLAY18673 Dicentrarchus labrax mRNA for opsin 282 3e-74
emb|Y18676.1|ABOY18676 Atherina boyeri mRNA for opsin 282 3e-74
emb|Y18670.1|LSAY18670 Liza saliens mRNA for opsin 282 4e-74
emb|Y18671.1|LAUY18671 Liza aurata mRNA for opsin 282 4e-74
gb|AF201469.1|AF201469 Salmo salar pineal gland rod-like op... 281 5e-74
emb|Y18668.1|MCEY18668 Mugil cephalus mRNA for opsin 281 6e-74
emb|Y18665.1|SAUY18665 Sparus aurata mRNA for opsin 280 1e-73
gb|L78007.1|ANGFROD Anguilla anguilla freshwater rhodopsin ... 280 1e-73
emb|Y18663.1|DVUY18663 Diplodus vulgaris mRNA for opsin 280 2e-73
emb|Y18664.1|SSAY18664 Sarpa salpa mRNA for opsin 280 2e-73
gb|AF369054.1|AF369054 Protopterus sp. IMCB-2001 rhodopsin ... 279 2e-73
emb|Y18667.1|LMOY18667 Lithognathus mormyrus mRNA for opsin 279 2e-73
dbj|AB046548.1|AB046548 Callithrix jacchus mRNA for P539 co... 279 3e-73
gb|M92036.1|GECP521A Gecko gecko green sensitive visual pig... 278 4e-73
gb|AF074043.1|AF074043 Phelsuma madagascariensis longintinu... 277 9e-73
gb|AF132042.1|AF132042 Cavia porcellus green opsin mRNA, co... 277 9e-73
gb|AF105152.1|AF105152 Danio rerio rhodopsin mRNA, complete... 277 9e-73
gb|L11014.1|ZEFUVPIGX Zebrafish unknown opsin-like gene, co... 277 9e-73
ref|NM_053548.1| Rattus norvegicus opsin 1 (cone pigments),... 277 9e-73
gb|AF158968.1|AF158968 Macaca fascicularis LW opsin mRNA, c... 277 1e-72
gb|AF132044.1|AF132044 Sciurus carolinensis green opsin mRN... 276 2e-72
ref|XM_054182.2| Homo sapiens similar to opsin 1 (cone pigm... 276 2e-72
ref|NM_000513.1| Homo sapiens opsin 1 (cone pigments), medi... 276 2e-72
gb|AF158975.1|AF158975 Macaca fascicularis MW opsin mRNA, c... 276 2e-72
dbj|AB046547.1|AB046547 Callithrix jacchus mRNA for P553 co... 276 2e-72
ref|NM_020061.1| Homo sapiens opsin 1 (cone pigments), long... 276 3e-72
ref|NM_008106.1| Mus musculus opsin 1 (cone pigments), medi... 276 3e-72
gb|AF011389.1|AF011389 Mus musculus green cone pigment (GCP... 276 3e-72
gb|BC014826.1|BC014826 Mus musculus, opsin 1 (cone pigments... 276 3e-72
gb|AF190672.1|AF190672 Mus musculus green opsin mRNA, compl... 276 3e-72
dbj|AB046546.1|AB046546 Callithrix jacchus mRNA for P561 co... 275 4e-72
emb|X62405.1|PMRO P.minutus mRNA for sand goby rod opsin 275 4e-72
gb|AF132041.1|AF132041 Odocoileus virginianus green opsin m... 272 3e-71
gb|AF132040.1|AF132040 Felis catus red opsin mRNA, complete... 272 3e-71
gb|AF110495.1|AF110495 Phoca vitulina long-wavelength cone ... 272 4e-71
gb|AF139726.1|AF139726 Nannospalax ehrenbergi green cone pi... 271 5e-71
gb|AF222333.1|AF222333 Taeniopygia guttata LWS opsin mRNA, ... 271 6e-71
gb|AF280398.1|AF280398 Bos taurus red opsin mRNA, complete cds 271 8e-71
gb|AF158098.1|AF158098 Hippoglossus hippoglossus pineal org... 271 8e-71
emb|Z22218.1|CJOPSINA C.jacchus opsin mRNA 270 1e-70
gb|AF132043.1|AF132043 Equus caballus green opsin mRNA, com... 270 2e-70
gb|AF038947.1|AF038947 Ambystoma tigrinum red cone visual p... 267 9e-70
gb|M62903.1|CHKVISUPIG Chicken red-sensitive pigment mRNA, ... 265 3e-69
gb|AF137207.1|AF137207 Lepisosteus osseus rhodopsin (Rhod) ... 265 3e-69
gb|AF055457.1|AF055457 Tursiops truncatus long-wavelength s... 265 4e-69
gb|AF137206.1|AF137206 Acipenser sp. rhodopsin (Rhod) gene,... 265 4e-69
emb|X57490.1|GGIOD G.gallus mRNA for iodopsin 265 4e-69
gb|U90895.1|XLU90895 Xenopus laevis red-sensitive cone opsi... 264 1e-68
gb|AF028016.1|AF028016 Ictalurus punctatus rhodopsin mRNA, ... 262 4e-68
gb|U97272.1|U97272 Abyssocottus korotneffi rod opsin gene, ... 262 4e-68
gb|U97273.1|U97273 Cottinella boulengeri rod opsin gene, pa... 261 5e-68
gb|AF247131.1|AF247131 Dimidiochromis compressiceps putativ... 261 5e-68
gb|U97266.1|U97266 Cottocomephorus inermis rod opsin gene, ... 261 6e-68
dbj|AB043891.1|AB043891 Cynops pyrrhogaster cp-L mRNA for v... 258 4e-67
gb|U97269.1|U97269 Procottus jettelesi rod opsin gene, part... 258 5e-67
gb|AF137208.1|AF137208 Amia calva rhodopsin (Rhod) gene, pa... 258 5e-67
gb|AF137210.1|AF137210 Pantodon buchholzi rhodopsin (Rhod) ... 258 5e-67
gb|U97274.1|U97274 Comephorus dybowskii rod opsin gene, par... 258 7e-67
dbj|AB001604.1|AB001604 Oryzias latipes mRNA for KFH-R, com... 257 1e-66
dbj|AB055656.1|AB055656 Cyprinus carpio mRNA for red-sensit... 256 2e-66
gb|U97267.1|U97267 Batrachocottus multiradiatus rod opsin g... 256 3e-66
gb|AF109371.1|AF109371 Danio rerio red-sensitive opsin (rdo... 254 6e-66
gb|U97265.1|U97265 Cottocomephorus grewingki rod opsin gene... 253 2e-65
gb|AF137212.1|AF137212 Balistes sp. rhodopsin (Rhod) gene, ... 252 3e-65
gb|U97268.1|U97268 Batrochocottus nicolskii rod opsin gene,... 252 4e-65
gb|U97270.1|U97270 Limnocottus bergianus rod opsin gene, pa... 251 9e-65
gb|L11867.1|CRARED Carassius auratus red cone opsin mRNA, c... 251 9e-65
gb|AF104904.1|AF104904 Danio rerio red opsin mRNA, partial cds 251 9e-65
emb|AJ224691.1|MNAJ4691 Malacosteus niger gene encoding rod... 249 3e-64
gb|U97264.1|U97264 Paracottus kneri rod opsin gene, partial... 248 6e-64
gb|AF137215.1|AF137215 Mola mola rhodopsin (Rhod) gene, par... 248 6e-64
gb|AF137213.1|AF137213 Ostracion sp. rhodopsin (Rhod) gene,... 247 1e-63
gb|U53874.1|HSU53874 Human blue cone pigment gene, complete... 246 2e-63
gb|L32835.1|HUMBCOP Homo sapiens blue cone opsin gene, comp... 246 2e-63
gb|AC024952.4|AC024952 Homo sapiens chromosome 7 clone RP11... 246 2e-63
gb|AF039433.1|PTBOG1 Pan troglodytes blue opsin gene, exon 1 246 2e-63
gb|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11... 246 2e-63
gb|M13295.1|HUMCNPB1 Human blue cone photoreceptor pigment ... 246 2e-63
gb|AF039429.1|PPBOG1 Pan paniscus blue opsin gene, exon 1 244 8e-63
gb|U97275.1|U97275 Taurulus bubalis rod opsin gene, partial... 244 1e-62
gb|AF137211.1|AF137211 Gadus morhua rhodopsin (Rhod) gene, ... 243 2e-62
gb|U97271.1|U97271 Limnocottus pallidus rod opsin gene, par... 243 2e-62
gb|AF137214.1|AF137214 Fugu rubripes rhodopsin (Rhod) gene,... 243 2e-62
gb|AF039425.1|GGBOG1 Gorilla gorilla blue opsin gene, exon 1 242 3e-62
emb|AJ277925.1|SCA277925 Serinus canaria partial mRNA for L... 241 7e-62
gb|L42953.1|COURHOD Cottus kessleri rhodopsin gene, partial... 238 4e-61
gb|AF148142.1|AF148142 Chanos chanos rhodopsin (Rhod) gene,... 228 8e-58
gb|AF233520.1|AF233520 Cyprinus carpio VA opsin mRNA, compl... 227 1e-57
gb|AF158976.1|AF158976 Macaca fascicularis SW opsin gene, c... 226 2e-57
gb|AF039422.1|COBOG1 Cebus olivaceus blue opsin gene, exon 1 224 9e-57
gb|AF137209.1|AF137209 Osteoglossum sp. rhodopsin (Rhod) ge... 222 3e-56
gb|AF369050.1|AF369050 Polyodon spathula rhodopsin gene, pa... 222 3e-56
dbj|AB035276.1|AB035276 Danio rerio mRNA for VAL-opsin, com... 222 4e-56
gb|AF039418.1|ALPABOP1 Alouatta palliata blue opsin gene, e... 221 6e-56
gb|AF031529.1|AF031529 Cavia porcellus green-sensitive opsi... 221 7e-56
gb|AF031530.1|AF031530 Sciurus carolinensis green-sensitive... 219 4e-55
gb|AF031526.1|AF031526 Oryctolagus cuniculus green-sensitiv... 219 4e-55
gb|AF031527.1|AF031527 Odocoileus virginianus green-sensiti... 218 6e-55
gb|AF148144.1|AF148144 Lates calcarifer rhodopsin (Rhod) ge... 218 6e-55
gb|AF031528.1|AF031528 Rattus norvegicus green-sensitive op... 217 1e-54
gb|U53875.1|SBU53875 Saimiri boliviensis blue cone pigment ... 216 2e-54
gb|AF031532.1|AF031532 Felis catus red opsin mRNA, partial cds 216 3e-54
gb|AF148143.1|AF148143 Psettodes sp. rhodopsin (Rhod) gene,... 215 4e-54
gb|AF031531.1|AF031531 Equus caballus opsin mRNA, partial cds 215 5e-54
dbj|AB058682.1|AB058682 Ciona intestinalis Ci-opsin1 mRNA f... 213 2e-53
gb|AF158097.1|AF158097 Hippoglossus hippoglossus pineal org... 212 3e-53
gb|AF031533.1|AF031533 Canis familiaris red opsin mRNA, par... 212 4e-53
gb|AF001499.1|SSAF001499 Salmo salar vertebrate ancient ops... 211 6e-53
dbj|AB035277.1|AB035277 Danio rerio mRNA for VA-opsin, comp... 211 1e-52
gb|AF190671.1|AF190671 Mus musculus blue opsin gene, comple... 205 5e-51
gb|U92558.1|MUSBCP1 Mus musculus blue cone pigment gene, ex... 201 6e-50
gb|AF247116.1|AF247116 Oreochromis niloticus putative blue ... 132 2e-49
gb|AF134193.1|ACSWSOPS2 Anolis carolinensis SWS1 opsin (sws... 198 5e-49
gb|AF028014.1|AF028014 Ictalurus punctatus parapinopsin mRN... 197 1e-48
gb|U49760.1|BTBCP1 Bos taurus blue cone pigment protein gen... 196 2e-48
gb|AF104903.1|AF104903 Danio rerio blue cone opsin mRNA, pa... 194 7e-48
gb|AF134192.1|ACSWSOPS1 Anolis carolinensis SWS1 opsin (sws... 194 1e-47
gb|AF247127.1|AF247127 Labeotropheus fuelleborni putative r... 119 4e-47
gb|AF247126.1|AF247126 Metriaclima zebra putative red sensi... 119 5e-47
gb|AF247125.1|AF247125 Dimidiochromis compressiceps putativ... 119 6e-47
gb|AF247128.1|AF247128 Oreochromis niloticus putative red s... 139 5e-46
gb|AF149234.1|CLSWS1OP1 Columba livia SWS1 opsin (sws1) gen... 186 3e-45
dbj|D50584.1|D50584 Hemigrapsus sanguineus mRNA for opsin B... 152 6e-35
gb|AF247117.1|AF247117 Dimidiochromis compressiceps putativ... 91 1e-34
gb|AY029607.1|AY029607S1 Mesocricetus auratus uv cone pigme... 150 2e-34
gb|AF247118.1|AF247118 Metriaclima zebra putative blue sens... 91 2e-34
gb|AF247119.1|AF247119 Labeotropheus fuelleborni putative b... 91 2e-34
gb|AF247120.1|AF247120 Oreochromis niloticus putative blue ... 89 8e-34
dbj|D50583.1|D50583 Hemigrapsus sanguineus mRNA for opsin B... 147 1e-33
gb|M90075.1|ASYRVISP Astyanax fasciatus red-like visual pig... 84 7e-33
gb|AF247115.1|AF247115 Labeotropheus fuelleborni putative b... 89 1e-32
gb|AF247113.1|AF247113 Dimidiochromis compressiceps putativ... 89 1e-32
gb|AF247114.1|AF247114 Metriaclima zebra putative blue sens... 89 1e-32
dbj|AB064496.1|AB064496 Bombyx mori mRNA for Boceropsin, co... 140 2e-31
gb|AF247124.1|AF247124 Oreochromis niloticus putative green... 139 4e-31
ref|NM_013887.1| Mus musculus opsin 4 (melanopsin) (Opn4), ... 138 6e-31
gb|AF147789.1|AF147789 Mus musculus melanopsin mRNA, comple... 138 6e-31
ref|XM_010161.3| Homo sapiens similar to opsin 1 (cone pigm... 137 1e-30
gb|AF189714.1|AF189714 Megoura viciae long-wavelength like ... 137 1e-30
gb|AF039435.1|PTBOG5 Pan troglodytes blue opsin gene, exons... 136 3e-30
gb|AF039432.1|PPBOG7 Pan paniscus blue opsin gene, exons 4,... 136 3e-30
gb|AF039428.1|GGBOG7 Gorilla gorilla blue opsin gene, exons... 136 3e-30
gb|M13298.1|HUMCNPB4 Human blue cone photoreceptor pigment ... 135 4e-30
gb|AF077193.1|AF077193 Papilio glaucus rhodopsin (PglRh4) m... 135 4e-30
ref|NM_014322.1| Homo sapiens opsin 3 (encephalopsin, panop... 134 2e-29
gb|AF140242.1|AF140242 Homo sapiens encephalopsin mRNA, com... 134 2e-29
gb|AF303588.1|AF303588 Homo sapiens panopsin (OPN3) mRNA, c... 134 2e-29
ref|XM_050662.1| Homo sapiens opsin 3 (encephalopsin, panop... 134 2e-29
gb|AF155134.1|AF155134 Schistosoma mansoni RHO G-protein co... 132 3e-29
emb|AJ417432.1|FCA417432 Felis catus ops gene for opsin 132 5e-29
gb|AF149236.1|CLSWS1OP3 Columba livia SWS1 opsin (sws1) gen... 132 6e-29
gb|AF039421.1|ALPABOP7 Alouatta palliata blue opsin gene, e... 132 6e-29
emb|X71665.1|SSOPS Sphodromantis ssp. mRNA for opsin 131 8e-29
ref|NM_033282.1| Homo sapiens opsin 4 (melanopsin) (OPN4), ... 130 1e-28
gb|AF077189.1|AF077189 Papilio glaucus rhodopsin (PglRh1) m... 130 2e-28
gb|U92561.1|MUSBCP4 Mus musculus blue cone pigment gene, ex... 129 3e-28
gb|U12024.1|AMU12024 Astyanax mexicanus green opsin gene (g... 80 4e-28
ref|NM_010098.1| Mus musculus opsin (encephalopsin) (Opn3),... 129 5e-28
gb|AF140241.1|AF140241 Mus musculus encephalopsin mRNA, com... 129 5e-28
gb|AF000947.1|AF000947 Sepia officinalis rhodopsin (RHODOPS... 128 7e-28
dbj|AB006454.1|AB006454 Patinopecten yessoensis scop1 mRNA ... 128 7e-28
dbj|AB007423.1|AB007423 Papilio xuthus PxRh1 mRNA for opsin... 128 9e-28
gb|U32501.1|CBU32501 Cataglyphis bombycina rhodopsin mRNA, ... 127 1e-27
gb|AF039424.1|COBOG5 Cebus olivaceus blue opsin gene, exons... 127 1e-27
gb|AY036061.1| Gallus gallus putative photopigment melanops... 127 1e-27
gb|M13297.1|HUMCNPB3 Human blue cone photoreceptor pigment ... 126 2e-27
gb|AF134194.1|ACSWSOPS3 Anolis carolinensis SWS1 opsin (sws... 126 2e-27
gb|AF039434.1|PTBOG3 Pan troglodytes blue opsin gene, exons... 126 2e-27
dbj|AB007425.1|AB007425 Papilio xuthus PxRh3 mRNA for opsin... 126 3e-27
gb|AY029610.1|AY029607S4 Mesocricetus auratus uv cone pigme... 126 3e-27
gb|AF014797.1|AF014797 Xenopus laevis melanopsin (Xmop) mRN... 126 3e-27
gb|AF067080.1|AF067080 Papilio glaucus rhodopsin (Rh3) mRNA... 125 7e-27
gb|U49763.1|BTBCP4 Bos taurus blue cone pigment protein gen... 125 7e-27
gb|L78080.1|L78080 Manduca sexta opsin (Manop1) mRNA, compl... 124 9e-27
emb|X80071.1|SGLO1RN S.gregaria Lo1 mRNA 123 2e-26
gb|AC080007.26| Homo sapiens 3q BAC RP11-529F4 (Roswell Par... 96 2e-26
gb|U49742.1|HSU49742 Human rhodopsin gene, complete cds 96 2e-26
gb|M13296.1|HUMCNPB2 Human blue cone photoreceptor pigment ... 123 3e-26
gb|U26026.1|AMU26026 Apis mellifera long-wavelength rhodops... 123 3e-26
gb|AF039431.1|PPBOG5 Pan paniscus blue opsin gene, exon 3 122 4e-26
gb|AF039427.1|GGBOG5 Gorilla gorilla blue opsin gene, exon 3 122 4e-26
gb|U32502.1|CAU32502 Camponotus abdominalis rhodopsin mRNA,... 122 6e-26
gb|AF385333.1|AF385333 Vanessa cardui long wavelength-sensi... 121 8e-26
gb|AF077190.1|AF077190 Papilio glaucus rhodopsin (PglRh2) m... 121 1e-25
gb|AF149233.1|CLRHII2 Columba livia RH2 opsin (rhs) gene, e... 80 1e-25
gb|S53494.1|S53494 opsin [Procambarus clarkii=crayfishes, r... 120 1e-25
dbj|AB006455.1|AB006455 Patinopecten yessoensis scop2 mRNA ... 120 2e-25
gb|AF039423.1|COBOG3 Cebus olivaceus blue opsin gene, exons... 119 4e-25
gb|AF039430.1|PPBOG3 Pan paniscus blue opsin gene, exon 2 119 5e-25
gb|AF039426.1|GGBOG3 Gorilla gorilla blue opsin gene, exon 2 119 5e-25
dbj|AB007424.1|AB007424 Papilio xuthus PxRh2 mRNA for opsin... 119 5e-25
emb|X70498.1|TPRHODOPS T.pacificus mRNA for rhodopsin 118 7e-25
emb|X56788.1|LFRHODOP L.forbesi mRNA for rhodopsin 118 7e-25
gb|AF247123.1|AF247123 Labeotropheus fuelleborni putative g... 88 7e-25
gb|AF247122.1|AF247122 Metriaclima zebra putative green sen... 88 7e-25
ref|NM_079644.1| Drosophila melanogaster Rhodopsin 6 (Rh6),... 117 1e-24
emb|Z86118.1|DMZ86118 D.melanogaster mRNA for Rh6 rhodopsin 117 1e-24
gb|AF247121.1|AF247121 Dimidiochromis compressiceps putativ... 88 1e-24
emb|Y09004.1|CFRHOD C.familiaris gene encoding rhodopsin 92 2e-24
gb|AF266516.1|AF266516 Mustela putorius furo rhodopsin-like... 84 2e-24
gb|AF003546.1| Procambarus milleri rhodopsin gene, partial cds 115 4e-24
gb|U92560.1|MUSBCP3 Mus musculus blue cone pigment gene, ex... 115 4e-24
emb|X61084.1|CGRHOD C.griseus rhodopsin gene for opsin protein 94 6e-24
gb|AY029609.1|AY029607S3 Mesocricetus auratus uv cone pigme... 115 6e-24
gb|AF039420.1|ALPABOP5 Alouatta palliata blue opsin gene, e... 115 6e-24
gb|L42954.1|CGORHOD Coregonus autumnalis rhodopsin gene, pa... 115 7e-24
gb|AF039419.1|ALPABOP3 Alouatta palliata blue opsin gene, e... 115 7e-24
gb|U49761.1|BTBCP2 Bos taurus blue cone pigment protein gen... 115 7e-24
emb|X07797.1|PDRHOD Octopus mRNA for rhodopsin 114 1e-23
gb|L03792.1|CRBOPM Limulus polyphemus opsin mRNA, complete cds 113 2e-23
gb|AF385330.1|AF385330 Galleria mellonella long wavelength-... 113 2e-23
gb|L03782.1|CRBOPSINB Horseshoe crab opsin mRNA, complete cds 113 2e-23
emb|Z49108.1|ASOPSIN A.subulata gene for opsin 113 3e-23
gb|L03781.1|CRBOPSINA Horseshoe crab opsin mRNA, complete cds 113 3e-23
gb|AF126750.1|AF126750 Heliconius erato opsin (OPS1) mRNA, ... 113 3e-23
gb|L03791.1|CRBOPLE Limulus polyphemus opsin mRNA, complete... 113 3e-23
gb|AF149235.1|CLSWS1OP2 Columba livia SWS1 opsin (sws1) gen... 113 3e-23
gb|AF385331.1|AF385331 Spodoptera exigua long wavelength-se... 113 3e-23
dbj|D00702.1|CHKRDPSN Chicken rhodopsin gene 112 5e-23
gb|AF003544.1| Cambarellus schufeldtii rhodopsin gene, part... 112 6e-23
gb|AF385332.1|AF385332 Junonia coenia long wavelength-sensi... 112 6e-23
gb|AF003543.1| Cambarus ludovicianus rhodopsin gene, partia... 111 8e-23
gb|AF003545.1| Orconectes virilis rhodopsin gene, partial cds 111 1e-22
gb|AF005387.1| Orconectes australis rhodopsin gene, partial... 111 1e-22
gb|M55171.1|MUSOPS Mouse opsin (MOPS) gene, complete cds 111 1e-22
gb|U49762.1|BTBCP3 Bos taurus blue cone pigment protein gen... 110 1e-22
gb|AY029603.1|AY029603S1 Phodopus sungorus uv cone pigment ... 110 2e-22
ref|NM_079683.1| Drosophila melanogaster neither inactivati... 110 2e-22
gb|AF025813.1|AF025813 Drosophila subobscura rhodopsin 1 (R... 110 2e-22
gb|AF005389.1| Procambarus orcinus rhodopsin gene, partial cds 109 4e-22
gb|AF028015.1|AF028015 Ictalurus punctatus red cone pigment... 109 4e-22
gb|AF005385.1| Cambarus hubrichti rhodopsin gene, partial cds 108 5e-22
gb|AF126751.1|AF126751 Heliconius melpomene opsin (OPS1) mR... 108 5e-22
gb|AF005386.1| Cambarus maculatus rhodopsin gene, partial cds 108 7e-22
gb|AY029608.1|AY029607S2 Mesocricetus auratus uv cone pigme... 108 7e-22
gb|U92559.1|MUSBCP2 Mus musculus blue cone pigment gene, ex... 108 7e-22
gb|AF149230.1|CLRHI1 Columba livia RH1 opsin (rh1) gene, ex... 108 9e-22
gb|M58334.1|CEROPSIN C.erythrocephala opsin mRNA, complete cds 107 1e-21
gb|AF005388.1| Procambarus seminolae rhodopsin gene, partia... 107 2e-21
ref|NM_009102.1| Mus musculus retinal pigment epithelium de... 104 1e-20
gb|AF012271.1|AF012271 Mus musculus visual pigment-like rec... 104 1e-20
gb|AF189715.1|AF189715 Megoura viciae UV-wavelength like op... 103 3e-20
gb|AC007769.3|AC007769 Drosophila melanogaster, chromosome ... 102 5e-20
gb|AE003709.2|AE003709 Drosophila melanogaster genomic scaf... 102 5e-20
ref|NM_079674.1| Drosophila melanogaster Rhodopsin 2 (Rh2),... 100 1e-19
emb|Z11504.1|RRNPV1R R.rattus mRNA for NPY-1 receptor 100 3e-19
gb|AC007814.6|AC007814 Drosophila melanogaster, chromosome ... 99 6e-19
gb|AE003724.2|AE003724 Drosophila melanogaster genomic scaf... 99 6e-19
gb|M12896.1|DROOPSAA D.melanogaster opsin gene Rh2, complet... 99 6e-19
gb|AF005779.2|AF005779 Sus scrofa neuropeptide Y Y1 recepto... 99 7e-19
gb|AF131258.1|LCRHO1 Latimeria chalumnae RH2 opsin (rh2) ge... 98 9e-19
ref|NM_010934.1| Mus musculus neuropeptide Y receptor Y1 (N... 98 1e-18
dbj|D63818.1|MUSNYY1RA Mouse mRNA for neuropeptide Y-Y1 rec... 98 1e-18
gb|U67123.1|PMRHOD1 Petromyzon marinus rhodopsin gene, exon 1 98 1e-18
emb|Z18280.1|MMNPY1CDS Mus musculus NPY-1 receptor 98 1e-18
gb|M84755.1|HUMNEUYREC Human neuropeptide y receptor mRNA, ... 97 2e-18
gb|AF005778.1|AF005778 Canis familiaris neuropeptide Y Y1 r... 97 2e-18
gb|M88461.1|HUMNEYPEPY Human neuropeptide Y peptide YY rece... 97 2e-18
ref|XM_084167.1| Homo sapiens similar to neuropeptide Y rec... 97 2e-18
ref|NM_000909.1| Homo sapiens neuropeptide Y receptor Y1 (N... 97 2e-18
gb|M36695.1|MUSOPS1 Mouse opsin gene, exon 1 97 2e-18
gb|AF303089.1|AF303089 Macaca mulatta neuropeptide Y recept... 97 2e-18
gb|AF149232.1|CLRHII1 Columba livia RH2 opsin (rhs) gene, e... 96 4e-18
gb|AF042788.1|AF042788 Camponotus abdominalis short wavelen... 95 8e-18
gb|AF042787.1|AF042787 Cataglyphis bombycinus short wavelen... 95 1e-17
gb|L47533.1|L47533 Sepia officinalis rhodopsin (SORHODOPS) ... 95 1e-17
emb|X65878.1|DPRH2OP D.pseudoobscura rh2 opsin gene 94 1e-17
gb|U16824.1|HSU16824 Human rhodopsin (RHO) gene, promoter r... 94 2e-17
gb|L31503.1|AOIRHODOPS Anolis carolinensis (clone lamda66) ... 94 2e-17
gb|K00502.1|BOVOPS1 Bovine opsin gene exon 1 and 5' flank 94 2e-17
ref|NM_006583.1| Homo sapiens retinal pigment epithelium-de... 92 5e-17
gb|AF012270.1|AF012270 Homo sapiens visual pigment-like rec... 92 5e-17
gb|AF181579.1|AF181579 Habropoda depressa long-wavelength r... 92 7e-17
gb|U23808.1|XLU23808 Xenopus laevis rhodopsin gene, complet... 92 7e-17
gb|AF134189.1|ACOPSIN1 Anolis carolinensis RH2 opsin (rh2) ... 91 1e-16
gb|S79124.1|S79124S1 rh2Ac=RH2 opsin [Anolis carolinensis=A... 91 1e-16
gb|AF004169.1|AF004169 Apis mellifera ultraviolet-sensitive... 91 2e-16
gb|U50598.1|CLU50598 Columba livia pineal organ-specific op... 90 3e-16
ref|NM_079311.1| Drosophila melanogaster Rhodopsin 7 (Rh7),... 89 6e-16
gb|AF009982.1|AF009982 Galago senegalensis color vision ops... 89 6e-16
gb|AF131253.1|LCRH1 Latimeria chalumnae rhodopsin (rh1) gen... 89 6e-16
gb|AY060299.1| Drosophila melanogaster GH14208 full length ... 89 6e-16
gb|S75251.1|S75251S1 Astyanax mexicanus opsin (rh11Af) gene... 89 7e-16
gb|AF134762.1|AMOP1 Astyanax mexicanus opsin (sws2) gene, e... 89 7e-16
dbj|AB046550.1|AB046549S2 Callithrix jacchus gene for P561 ... 88 1e-15
gb|J05097.1|RATSPR Rat substance P receptor (SPR) mRNA, com... 88 1e-15
gb|L25416.1|XELNPYPYY Xenopus laevis NPY/PYY receptor Y1 mR... 88 1e-15
ref|NM_012667.1| Rattus norvegicus Tachykinin 1 receptor (s... 88 1e-15
gb|AF091732.1|AF091732 Apis mellifera long-wavelength rhodo... 88 1e-15
emb|X64323.1|CPSPREC C.porcellus mRNA for substance P receptor 88 1e-15
gb|AF133907.1|AF133907 Anolis carolinensis opsin (SWS2) gen... 88 1e-15
gb|AF149240.1|CLSWS2OP3 Columba livia SWS2 opsin (sws2) gen... 87 2e-15
gb|AF054242.1|RNGO2 Rattus norvegicus green opsin gene, exon 2 87 2e-15
gb|AF191081.1|MMGOP2 Mus musculus green opsin gene, exon 2 87 2e-15
gb|AF121351.1|AF121351 Mus musculus chromosome X clone BAC ... 87 2e-15
gb|S76253.1|S76253 neurokinin 2 receptor [guinea pigs, Dunk... 87 2e-15
gb|AF158970.1|MAFALWMW2 Macaca fascicularis LW/MW hybrid op... 87 2e-15
gb|AC091473.1|AC091473 Mus musculus chromosome X clone : RP... 87 2e-15
gb|AF054236.1|OCGO2 Oryctolagus cuniculus green opsin gene,... 87 3e-15
gb|AF009977.1| Otolemur garnetti color vision opsin gene, e... 87 3e-15
ref|NM_001058.2| Homo sapiens tachykinin receptor 1 (TACR1)... 86 4e-15
gb|M74290.1|HUMSUBPRA Human substance P receptor protein mRNA 86 4e-15
gb|M84425.1|HUMSPRLONG Homo sapiens substance P receptor (l... 86 4e-15
ref|NM_009313.1| Mus musculus tachykinin receptor 1 (Tacr1)... 86 4e-15
gb|S62045.1|S62045 NK-1 receptor [human, lung, mRNA, 1486 nt] 86 4e-15
emb|X62934.1|MMSUBPREC M.musculus mRNA for substance P rece... 86 4e-15
gb|AF091718.1|AF091718 Exaerete frontalis long-wavelength r... 86 4e-15
gb|M81797.1|HUMNK1A Human NK-1 receptor mRNA, complete cds 86 4e-15
emb|Z68193.1|HSQC8B6 Human DNA sequence from cosmid QC8B6, ... 86 4e-15
gb|M31477.1|RATSPRA Rattus norvegicus substance P receptor ... 86 4e-15
gb|U87449.1|GGU87449 Gallus gallus opsin gene, complete cds 86 4e-15
ref|NM_080768.1| Rattus norvegicus Tachykinin 2 (substance ... 86 5e-15
gb|M31838.1|RATSKR Rat substance K receptor mRNA, complete cds 86 5e-15
gb|M76675.1|HUMNKIRX Human neurokinin 1 receptor (NKIR) mRN... 86 5e-15
gb|AC092402.1|AC092402 Homo sapiens chromosome X clone 27F1... 86 5e-15
dbj|AB046562.1|AB046561S2 Callithrix jacchus gene for P539 ... 86 6e-15
gb|U68000.1|CHREOP02 Capra hircus red opsin gene, exon 2 86 6e-15
gb|U90668.1|PMSL02 Petromyzon marinus P-opsin gene, exon 2 86 6e-15
ref|NM_001059.1| Homo sapiens tachykinin receptor 3 (TACR3)... 86 6e-15
gb|M89473.1|HUMNK3R Human neurokinin 3 receptor (NK3R) mRNA... 86 6e-15
dbj|AB046556.1|AB046555S2 Callithrix jacchus gene for P553 ... 86 6e-15
ref|NM_006679.1| Homo sapiens putative opioid receptor, neu... 85 8e-15
gb|M84605.1|HUMOPIODRE Human putative opioid receptor mRNA,... 85 8e-15
gb|AF091733.1|AF091733 Apis dorsata long-wavelength rhodops... 85 8e-15
emb|X65879.1|DPRH3OP D.pseudoobscura rh3 opsin gene 85 8e-15
gb|AF426173.1| Cavia porcellus neurokinin 3 receptor (NK3R)... 85 8e-15
gb|AF249124.1|AF249124 Polypedates cruciger rhodopsin gene,... 85 1e-14
gb|AF134768.1|ACPOPSIN2 Anolis carolinensis P opsin (p) gen... 85 1e-14
gb|AF249098.1|AF249098 Hyperolius sp. rhodopsin gene, exon ... 84 1e-14
ref|XM_005747.5| Homo sapiens tachykinin receptor 2 (TACR2)... 84 1e-14
emb|Y00043.1|DMRH92CD Drosophila R7 photoreceptor cell opsi... 84 1e-14
gb|AF249128.1|AF249128 Philautus charius rhodopsin gene, ex... 84 1e-14
gb|AF249119.1|AF249119 Rana temporaria rhodopsin gene, exon... 84 1e-14
gb|M13299.1|HUMCNPB5 Human blue cone photoreceptor pigment ... 84 1e-14
gb|M17718.1|DRORH3A D.melanogaster opsin (Rh3) gene, comple... 84 1e-14
gb|AC008143.5|AC008143 Drosophila melanogaster, chromosome ... 84 1e-14
gb|AF184224.1|AF184224 Drosophila melanogaster clone GH0250... 84 1e-14
gb|AE003729.2|AE003729 Drosophila melanogaster genomic scaf... 84 1e-14
ref|XM_081147.1| Rhodopsin 3, mRNA 84 1e-14
ref|NM_079687.1| Drosophila melanogaster Rhodopsin 3 (Rh3),... 84 1e-14
ref|XM_081672.1| Neuropeptide Y receptor-like, mRNA 84 1e-14
gb|AF149244.1|CLLWSOP2 Columba livia LWS opsin (lws) gene, ... 84 1e-14
gb|AF134765.1|AMOP4 Astyanax mexicanus opsin (sws2) gene, e... 84 1e-14
gb|AF133908.1|AF133908 Oryctolagus cuniculus tachykinin neu... 84 1e-14
gb|AC007816.7|AC007816 Drosophila melanogaster, chromosome ... 84 1e-14
dbj|AB028218.1|AB028218 Papilio xuthus PxRh5 mRNA for UV op... 84 1e-14
ref|NM_001057.1| Homo sapiens tachykinin receptor 2 (TACR2)... 84 2e-14
gb|M57414.1|HUMNEKAR Human neurokinin A receptor (NK-2R) mR... 84 2e-14
gb|AF249127.1|AF249127 Philautus wynaadensis rhodopsin gene... 84 2e-14
gb|AF249105.1|AF249105 Boophis tephraeomystax rhodopsin gen... 84 2e-14
gb|AF249101.1|AF249101 Mantella madagascariensis rhodopsin ... 84 2e-14
gb|AF091730.1|AF091730 Xylocopa virginica long-wavelength r... 84 2e-14
gb|AF091720.1|AF091720 Euglossa imperialis long-wavelength ... 84 2e-14
gb|AF134764.1|AMOP3 Astyanax mexicanus opsin (sws2) gene, e... 84 2e-14
>ref|NM_001708.1| Homo sapiens opsin 1 (cone pigments), short-wave-sensitive (color
blindness, tritan) (OPN1SW), mRNA
Length = 1101
Score = 690 bits (1781), Expect = 0.0
Identities = 334/348 (95%), Positives = 334/348 (95%)
Frame = +2
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL
Sbjct: 8 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 187
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV
Sbjct: 188 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 367
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL
Sbjct: 368 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 547
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT
Sbjct: 548 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 727
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
QKA FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP
Sbjct: 728 QKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 907
Query: 301 IIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
IIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN
Sbjct: 908 IIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 1051
>gb|AF158977.1|AF158977 Macaca fascicularis SW opsin mRNA, complete cds
Length = 1050
Score = 657 bits (1694), Expect = 0.0
Identities = 321/349 (91%), Positives = 325/349 (92%), Gaps = 1/349 (0%)
Frame = +1
Query: 1 MRKMSEEE-FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVAT 59
MRKMSEEE FYLFKN+SSV PWDGPQYHIAPVWAFYLQAAFMGTVFL GFPLNAMVLVAT
Sbjct: 1 MRKMSEEEEFYLFKNLSSVKPWDGPQYHIAPVWAFYLQAAFMGTVFLAGFPLNAMVLVAT 180
Query: 60 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGL 119
+RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFV SC GYFVFGRHVCA E FLGTVAGL
Sbjct: 181 VRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVNSCKGYFVFGRHVCAFEAFLGTVAGL 360
Query: 120 VTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEG 179
VTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEG
Sbjct: 361 VTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEG 540
Query: 180 LQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESAT 239
LQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESAT
Sbjct: 541 LQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESAT 720
Query: 240 TQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYN 299
TQKA FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIP+FFSKSACIYN
Sbjct: 721 TQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPAFFSKSACIYN 900
Query: 300 PIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
PIIYCFMNKQFQA IMKMVCGKAMTDESD SSQKTEVSTVSS+QVGPN
Sbjct: 901 PIIYCFMNKQFQAHIMKMVCGKAMTDESDISSSQKTEVSTVSSSQVGPN 1047
>gb|L76226.1|IOPBCP Miopithecus talapoin blue cone pigment gene
Length = 1027
Score = 638 bits (1645), Expect = 0.0
Identities = 312/342 (91%), Positives = 315/342 (91%), Gaps = 1/342 (0%)
Frame = +1
Query: 1 MRKMSEEE-FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVAT 59
MRKMSEEE FYLFKNISSV PWDGPQYHI PVWA+YLQAAFMGTVFL GFPLNAMVLVAT
Sbjct: 1 MRKMSEEEEFYLFKNISSVKPWDGPQYHIPPVWAYYLQAAFMGTVFLAGFPLNAMVLVAT 180
Query: 60 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGL 119
+RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFV SC GYFVFGRHVC E FLGTVAGL
Sbjct: 181 VRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVNSCKGYFVFGRHVCGFEAFLGTVAGL 360
Query: 120 VTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEG 179
VTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATW IGIGVSIPPFFGWSRFIPEG
Sbjct: 361 VTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWIIGIGVSIPPFFGWSRFIPEG 540
Query: 180 LQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESAT 239
LQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESAT
Sbjct: 541 LQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESAT 720
Query: 240 TQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYN 299
TQKA FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIP+FFSKSACIYN
Sbjct: 721 TQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPAFFSKSACIYN 900
Query: 300 PIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
PIIYCFMNKQFQA IMKMVCGKAMTDESD SSQKTEVSTVS
Sbjct: 901 PIIYCFMNKQFQAHIMKMVCGKAMTDESDISSSQKTEVSTVS 1026
>gb|L76201.1|CALBCP Callithrix jacchus blue cone pigment gene
Length = 1030
Score = 619 bits (1597), Expect = e-176
Identities = 302/343 (88%), Positives = 312/343 (90%), Gaps = 2/343 (0%)
Frame = +1
Query: 1 MRKMSEEE-FYLFKNISSVGPWDGPQY-HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVA 58
M KMSEEE FYLFKNISSVGPWDGPQY HIAP WA+YLQAAFMG VFLIG PLN MVLVA
Sbjct: 1 MSKMSEEEEFYLFKNISSVGPWDGPQYPHIAPSWAYYLQAAFMGIVFLIGLPLNTMVLVA 180
Query: 59 TLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
T+RYKKLR PLNY+LVNVS GGFLLCIFSVFPVFVASC+GYFVFGRHVCALEGFLGTVAG
Sbjct: 181 TVRYKKLRHPLNYVLVNVSVGGFLLCIFSVFPVFVASCHGYFVFGRHVCALEGFLGTVAG 360
Query: 119 LVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPE 178
LVTGWSLAFLAFERYIVICKPFGNFRFSSKHAL VVL TWTIGIGVSIPPFFGWSR+I E
Sbjct: 361 LVTGWSLAFLAFERYIVICKPFGNFRFSSKHALMVVLTTWTIGIGVSIPPFFGWSRYIAE 540
Query: 179 GLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA 238
GLQCSCGPDWYTVGTKYRSE YTWFLFIFCFIVPL+LICFSY QLLRALKAVAAQQQESA
Sbjct: 541 GLQCSCGPDWYTVGTKYRSEYYTWFLFIFCFIVPLALICFSYAQLLRALKAVAAQQQESA 720
Query: 239 TTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIY 298
TTQKA FCVCYVPYAA AMYMVNNRNHGLDLRLVTIP+FFSKS+CIY
Sbjct: 721 TTQKAEREVSRMVVVMVGSFCVCYVPYAALAMYMVNNRNHGLDLRLVTIPAFFSKSSCIY 900
Query: 299 NPIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
NPIIYCFMNKQF+ACIM+MVCGKAMTDESD SSQKTEVSTVS
Sbjct: 901 NPIIYCFMNKQFRACIMEMVCGKAMTDESDISSSQKTEVSTVS 1029
>gb|U63972.1|RNU63972 Rattus norvegicus blue cone opsin-like pigment mRNA, complete cds
Length = 1690
Score = 605 bits (1559), Expect = e-171
Identities = 290/348 (83%), Positives = 310/348 (88%), Gaps = 1/348 (0%)
Frame = +1
Query: 2 RKMS-EEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
RKMS E EFYLF+NISSVGPWDGPQYHIAPVWAF+LQAAFMG VF G PLNA VLVATL
Sbjct: 43 RKMSGEXEFYLFQNISSVGPWDGPQYHIAPVWAFHLQAAFMGFVFFAGTPLNATVLVATL 222
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
YKKLRQPLNYILVNVS GGFL CIFSVF VF+ASC+GYF+FGRHVCALE FLG+VAGLV
Sbjct: 223 HYKKLRQPLNYILVNVSLGGFLFCIFSVFTVFIASCHGYFLFGRHVCALEAFLGSVAGLV 402
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
TGWSLAFLAFERY+VICKPFGN RF+SKHALTVVL TWTIGIGVSIPPFFGWSRFIPEGL
Sbjct: 403 TGWSLAFLAFERYLVICKPFGNIRFNSKHALTVVLITWTIGIGVSIPPFFGWSRFIPEGL 582
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCGPDWYTVGTKYRSE YTWFLFIFCFI+PLSLICFSY QLLR L+AVAAQQQESATT
Sbjct: 583 QCSCGPDWYTVGTKYRSEHYTWFLFIFCFIIPLSLICFSYFQLLRTLRAVAAQQQESATT 762
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
QKA FC+CYVPYAA AMYMVNNRNHGL LRLVTIP+FFSKS+C+YNP
Sbjct: 763 QKAEREVSHMVVVMVGSFCLCYVPYAALAMYMVNNRNHGLYLRLVTIPAFFSKSSCVYNP 942
Query: 301 IIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
IIYCFMNKQF+ACI++MVC K MTDESD SQKTEVSTVSS++VGP+
Sbjct: 943 IIYCFMNKQFRACILEMVCRKPMTDESDMSGSQKTEVSTVSSSKVGPH 1086
>gb|AF051163.1|AF051163 Rattus norvegicus blue cone opsin pigment mRNA, complete cds
Length = 1041
Score = 603 bits (1554), Expect = e-171
Identities = 285/343 (83%), Positives = 307/343 (89%)
Frame = +1
Query: 6 EEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
E+EFYLF+NISSVGPWDGPQYHIAPVWAF+LQAAFMG VF G PLNA VLVATL YKKL
Sbjct: 10 EDEFYLFQNISSVGPWDGPQYHIAPVWAFHLQAAFMGFVFFAGTPLNATVLVATLHYKKL 189
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
RQPLNY+LVNVS GGFL CIFSVF VF+ASC+GYF+FGRHVCALE FLG+VAGLVTGWSL
Sbjct: 190 RQPLNYVLVNVSLGGFLFCIFSVFTVFIASCHGYFLFGRHVCALEAFLGSVAGLVTGWSL 369
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
AFLAFERY+VICKPFGN RF+SKHALTVVL TWTIGIGVSIPPFF WSR IPEGLQCSCG
Sbjct: 370 AFLAFERYLVICKPFGNIRFNSKHALTVVLITWTIGIGVSIPPFFXWSRLIPEGLQCSCG 549
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
PDWYTVGTKYRSE YTWFLFIFCFI+PLSLICFSY QLLR L+AVAAQQQESATTQKA
Sbjct: 550 PDWYTVGTKYRSEHYTWFLFIFCFIIPLSLICFSYFQLLRTLRAVAAQQQESATTQKAER 729
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
FC+CYVPYAA AMYMVNNRNHGLDLRLVTIP+FFSKS+C+YNPIIYCF
Sbjct: 730 EVSHMVVVMVGSFCLCYVPYAALAMYMVNNRNHGLDLRLVTIPAFFSKSSCVYNPIIYCF 909
Query: 306 MNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
MNKQF+ACI++MVC K MTDESD SSQKTEVSTVSS++VGP+
Sbjct: 910 MNKQFRACILEMVCRKPMTDESDMSSSQKTEVSTVSSSKVGPH 1038
>gb|AF190670.1|AF190670 Mus musculus blue opsin mRNA, complete cds
Length = 1655
Score = 602 bits (1551), Expect = e-170
Identities = 285/348 (81%), Positives = 312/348 (88%), Gaps = 1/348 (0%)
Frame = +1
Query: 2 RKMS-EEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
R+MS E++FYLF+NISSVGPWDGPQYH+APVWAF LQAAFMG VF +G PLNA+VLVATL
Sbjct: 55 REMSGEDDFYLFQNISSVGPWDGPQYHLAPVWAFRLQAAFMGFVFFVGTPLNAIVLVATL 234
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
YKKLRQPLNYILVNVS GGFL CIFSVF VF+ASC+GYF+FGRHVCALE FLG+VAGLV
Sbjct: 235 HYKKLRQPLNYILVNVSLGGFLFCIFSVFTVFIASCHGYFLFGRHVCALEAFLGSVAGLV 414
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
TGWSLAFLAFERY+VICKPFG+ RF+SKHAL VVLATW IGIGVSIPPFFGWSRFIPEGL
Sbjct: 415 TGWSLAFLAFERYVVICKPFGSIRFNSKHALMVVLATWIIGIGVSIPPFFGWSRFIPEGL 594
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCGPDWYTVGTKYRSE YTWFLFIFCFI+PLSLICFSY+QLLR L+AVAAQQQESATT
Sbjct: 595 QCSCGPDWYTVGTKYRSEYYTWFLFIFCFIIPLSLICFSYSQLLRTLRAVAAQQQESATT 774
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
QKA FC+CYVPYAA AMYMVNNRNHGLDLRLVTIP+FFSKS+C+YNP
Sbjct: 775 QKAEREVSHMVVVMVGSFCLCYVPYAALAMYMVNNRNHGLDLRLVTIPAFFSKSSCVYNP 954
Query: 301 IIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
IIYCFMNKQF+ACI++MVC K M DESD SQKTEVSTVSS++VGP+
Sbjct: 955 IIYCFMNKQFRACILEMVCRKPMADESDVSGSQKTEVSTVSSSKVGPH 1098
>gb|U92557.1|BTU92557 Bos taurus blue cone pigment protein mRNA, complete cds
Length = 1050
Score = 602 bits (1551), Expect = e-170
Identities = 287/349 (82%), Positives = 309/349 (88%), Gaps = 1/349 (0%)
Frame = +1
Query: 1 MRKMSEEE-FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVAT 59
M KMSEEE F LFKNIS VGPWDGPQYH+APVWAF+LQA FMG VF +G PLNA VLVAT
Sbjct: 1 MSKMSEEEEFLLFKNISLVGPWDGPQYHLAPVWAFHLQAVFMGFVFFVGTPLNATVLVAT 180
Query: 60 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGL 119
LRY+KLRQPLNYILVNVS GGF+ CIFSVF VF+ SC GYFVFGRHVCALE FLG AGL
Sbjct: 181 LRYRKLRQPLNYILVNVSLGGFIYCIFSVFIVFITSCYGYFVFGRHVCALEAFLGCTAGL 360
Query: 120 VTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEG 179
VTGWSLAFLAFERYI+ICKPFGNFRFSSKHAL VV+ATWTIGIGVSIPPFFGWSRF+PEG
Sbjct: 361 VTGWSLAFLAFERYIIICKPFGNFRFSSKHALMVVVATWTIGIGVSIPPFFGWSRFVPEG 540
Query: 180 LQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESAT 239
LQCSCGPDWYTVGTKY SE YTWFLFIFC+IVPLSLICFSY+QLL AL+AVAAQQQESA+
Sbjct: 541 LQCSCGPDWYTVGTKYYSEYYTWFLFIFCYIVPLSLICFSYSQLLGALRAVAAQQQESAS 720
Query: 240 TQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYN 299
TQKA FC+CY PYAA AMY+VNNRNHG+DLRLVTIP+FFSKSAC+YN
Sbjct: 721 TQKAEREVSHMVVVMVGSFCLCYTPYAALAMYIVNNRNHGVDLRLVTIPAFFSKSACVYN 900
Query: 300 PIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
PIIYCFMNKQF+ACIM+MVCGK MTDES+ SSQKTEVSTVSS+QVGPN
Sbjct: 901 PIIYCFMNKQFRACIMEMVCGKPMTDESELSSSQKTEVSTVSSSQVGPN 1047
>ref|NM_007538.1| Mus musculus opsin 1 (cone pigments), short-wave-sensitive (color
blindness, tritan) (Opn1sw), mRNA
Length = 1041
Score = 600 bits (1548), Expect = e-170
Identities = 282/343 (82%), Positives = 308/343 (89%)
Frame = +1
Query: 6 EEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
E++FYLF+NISSVGPWDGPQYH+APVWAF LQAAFMG VF +G PLNA+VLVATL YKKL
Sbjct: 10 EDDFYLFQNISSVGPWDGPQYHLAPVWAFRLQAAFMGFVFFVGTPLNAIVLVATLHYKKL 189
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
RQPLNYILVNVS GGFL CIFSVF VF+ASC+GYF+FGRHVCALE FLG+VAGLVTGWSL
Sbjct: 190 RQPLNYILVNVSLGGFLFCIFSVFTVFIASCHGYFLFGRHVCALEAFLGSVAGLVTGWSL 369
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
AFLAFERY+VICKPFG+ RF+SKHAL VVLATW IGIGVSIPPFFGWSRFIPEGLQCSCG
Sbjct: 370 AFLAFERYVVICKPFGSIRFNSKHALMVVLATWIIGIGVSIPPFFGWSRFIPEGLQCSCG 549
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
PDWYTVGTKYRSE YTWFLFIFCFI+PLSLICFSY+QLLR L+AVAAQQQESATTQKA
Sbjct: 550 PDWYTVGTKYRSEYYTWFLFIFCFIIPLSLICFSYSQLLRTLRAVAAQQQESATTQKAER 729
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
FC+CYVPYAA AMYMVNNRNHGLDLRLVTIP+FFSKS+C+YNPIIYCF
Sbjct: 730 EVSHMVVVMVGSFCLCYVPYAALAMYMVNNRNHGLDLRLVTIPAFFSKSSCVYNPIIYCF 909
Query: 306 MNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
MNKQF+ACI++MVC K M DESD SQKTEVSTVSS++VGP+
Sbjct: 910 MNKQFRACILEMVCRKPMADESDVSGSQKTEVSTVSSSKVGPH 1038
>gb|U49720.1|MMU49720 Mus musculus blue cone pigment mRNA, complete cds
Length = 1041
Score = 600 bits (1548), Expect = e-170
Identities = 282/343 (82%), Positives = 308/343 (89%)
Frame = +1
Query: 6 EEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
E++FYLF+NISSVGPWDGPQYH+APVWAF LQAAFMG VF +G PLNA+VLVATL YKKL
Sbjct: 10 EDDFYLFQNISSVGPWDGPQYHLAPVWAFRLQAAFMGFVFFVGTPLNAIVLVATLHYKKL 189
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
RQPLNYILVNVS GGFL CIFSVF VF+ASC+GYF+FGRHVCALE FLG+VAGLVTGWSL
Sbjct: 190 RQPLNYILVNVSLGGFLFCIFSVFTVFIASCHGYFLFGRHVCALEAFLGSVAGLVTGWSL 369
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
AFLAFERY+VICKPFG+ RF+SKHAL VVLATW IGIGVSIPPFFGWSRFIPEGLQCSCG
Sbjct: 370 AFLAFERYVVICKPFGSIRFNSKHALMVVLATWIIGIGVSIPPFFGWSRFIPEGLQCSCG 549
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
PDWYTVGTKYRSE YTWFLFIFCFI+PLSLICFSY+QLLR L+AVAAQQQESATTQKA
Sbjct: 550 PDWYTVGTKYRSEYYTWFLFIFCFIIPLSLICFSYSQLLRTLRAVAAQQQESATTQKAER 729
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
FC+CYVPYAA AMYMVNNRNHGLDLRLVTIP+FFSKS+C+YNPIIYCF
Sbjct: 730 EVSHMVVVMVGSFCLCYVPYAALAMYMVNNRNHGLDLRLVTIPAFFSKSSCVYNPIIYCF 909
Query: 306 MNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
MNKQF+ACI++MVC K M DESD SQKTEVSTVSS++VGP+
Sbjct: 910 MNKQFRACILEMVCRKPMADESDVSGSQKTEVSTVSSSKVGPH 1038
>emb|Y11787.1|MUUVSCO M.undulatus mRNA for UV-sensitive cone opsin
Length = 1159
Score = 571 bits (1471), Expect = e-161
Identities = 269/344 (78%), Positives = 298/344 (86%), Gaps = 1/344 (0%)
Frame = +1
Query: 6 EEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
EEEFYLFKN S GPWDGPQYHIAP WAFYLQ AFMG VF++G PLNA+VLV T++YKKL
Sbjct: 28 EEEFYLFKNGSIGGPWDGPQYHIAPPWAFYLQTAFMGFVFMVGTPLNAIVLVVTIKYKKL 207
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
RQPLNYILVN+SF GFL CI +F VFV+S GYFVFG+HVCA EGF+G AGLVTGWSL
Sbjct: 208 RQPLNYILVNISFCGFLACIICIFTVFVSSSQGYFVFGKHVCAFEGFMGATAGLVTGWSL 387
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
AFLAFERYIVICKP GNFRF++KHAL VV+ATW IGIGV+IPPFFGWSR++PEGLQCSCG
Sbjct: 388 AFLAFERYIVICKPLGNFRFTAKHALVVVVATWVIGIGVAIPPFFGWSRYVPEGLQCSCG 567
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
PDWYTVGTKYRSE YTWFLFIFCFIVPLSLI FSY+QLL AL+AVAAQQQESATTQKA
Sbjct: 568 PDWYTVGTKYRSEYYTWFLFIFCFIVPLSLIIFSYSQLLSALRAVAAQQQESATTQKAER 747
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
FCVCYVPYAA AMYMVNNR HG+DLRLVTIP+FFSKS+C+YNPIIYCF
Sbjct: 748 EVSRMVVVMVGSFCVCYVPYAALAMYMVNNREHGIDLRLVTIPAFFSKSSCVYNPIIYCF 927
Query: 306 MNKQFQACIMKMVCGKAMTDESDTCSS-QKTEVSTVSSTQVGPN 348
MNKQF+ CIM+MVCGK MTD+SD SS Q+TEVS+VSS+QV P+
Sbjct: 928 MNKQFRGCIMEMVCGKPMTDDSDMSSSAQRTEVSSVSSSQVSPS 1059
>emb|AJ238856.1|CLI238856 Columba livia mRNA for violet-sensitive cone opsin
Length = 1044
Score = 568 bits (1464), Expect = e-160
Identities = 264/344 (76%), Positives = 301/344 (86%), Gaps = 1/344 (0%)
Frame = +1
Query: 6 EEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
+EEFYLFKN SSVGPWDGPQYHIAP WAFYLQ AFMG VFL+G P NA+VLV T++YKKL
Sbjct: 10 DEEFYLFKNGSSVGPWDGPQYHIAPPWAFYLQTAFMGFVFLVGTPFNAIVLVVTIKYKKL 189
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
RQPLNYILVN+SF GF+ CIFSVF VFV+S GYF+FG+ +CALE F+G GLVTGWSL
Sbjct: 190 RQPLNYILVNISFSGFISCIFSVFTVFVSSSQGYFIFGKDMCALEAFVGATGGLVTGWSL 369
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
AFLAFERYIVICKPFGNFRF+SKHAL V+ATW IG+GV++PP+FGWSR++PEGLQCSCG
Sbjct: 370 AFLAFERYIVICKPFGNFRFNSKHALMAVVATWVIGLGVALPPWFGWSRYVPEGLQCSCG 549
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
PDWYTVGTKY+SE YTWFLFIFCFIVPLSLI FSY+QLL AL+AVAAQQQESATTQKA
Sbjct: 550 PDWYTVGTKYKSEYYTWFLFIFCFIVPLSLIIFSYSQLLSALRAVAAQQQESATTQKAER 729
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
FC+CYVPYAA AMYMVNNRNHGLDLRLVTIP+FFSKS+C+YNPIIYCF
Sbjct: 730 EVSRMVVVMVGSFCLCYVPYAALAMYMVNNRNHGLDLRLVTIPAFFSKSSCVYNPIIYCF 909
Query: 306 MNKQFQACIMKMVCGKAMTDESDTCSS-QKTEVSTVSSTQVGPN 348
MNKQF+ACI+++VCG+ MTD+SD SS Q+TEVS+VSS+QV P+
Sbjct: 910 MNKQFRACILELVCGRPMTDDSDVSSSAQRTEVSSVSSSQVSPS 1041
>gb|AF222331.1|AF222331 Taeniopygia guttata SWS1 opsin mRNA, complete cds
Length = 1063
Score = 567 bits (1462), Expect = e-160
Identities = 263/346 (76%), Positives = 298/346 (86%), Gaps = 1/346 (0%)
Frame = +3
Query: 4 MSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
M EEEFYLFKN SSVGPWDGPQYHIAP+WAFYLQ FMG VF+ G PLNA+VL+ T++YK
Sbjct: 9 MDEEEFYLFKNQSSVGPWDGPQYHIAPMWAFYLQTIFMGLVFVAGTPLNAIVLIVTIKYK 188
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLRQPLNYILVN+S G + C+F +F VF+AS GYFVFG+H+CA EGF G GLVTGW
Sbjct: 189 KLRQPLNYILVNISVSGLMCCVFCIFTVFIASSQGYFVFGKHMCAFEGFAGATGGLVTGW 368
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLAFLAFERYIVICKPFGNFRF+S+HAL VV ATW IG+GV+IPPFFGWSR+IPEGLQCS
Sbjct: 369 SLAFLAFERYIVICKPFGNFRFNSRHALLVVAATWIIGVGVAIPPFFGWSRYIPEGLQCS 548
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPDWYTVGTKY+SE YTWFLFIFCFIVPLSLI FSY+QLL AL+AVAAQQQESATTQKA
Sbjct: 549 CGPDWYTVGTKYKSEYYTWFLFIFCFIVPLSLIIFSYSQLLSALRAVAAQQQESATTQKA 728
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
FC+CYVPYAA AMYMVNNR HG+DLRLVTIP+FFSKS+C+YNPIIY
Sbjct: 729 EREVSRMVVVMVGSFCMCYVPYAALAMYMVNNREHGIDLRLVTIPAFFSKSSCVYNPIIY 908
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSS-QKTEVSTVSSTQVGPN 348
CFMNKQF+ACIM+ VCG+ MTD+S+ SS Q+TEVS+VSS+QVGP+
Sbjct: 909 CFMNKQFRACIMETVCGRPMTDDSEVSSSAQRTEVSSVSSSQVGPS 1046
>gb|AF074045.1|AF074045 Phelsuma madagascariensis longintinue third visual pigment (dg3)
mRNA, complete cds
Length = 1294
Score = 561 bits (1447), Expect = e-158
Identities = 262/348 (75%), Positives = 300/348 (85%), Gaps = 1/348 (0%)
Frame = +3
Query: 2 RKMS-EEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
R+MS EE+FYLF NISSVGP+DGPQYHIAP+WAFY+Q AFMG VF G PLN ++L+A +
Sbjct: 27 RRMSGEEDFYLFTNISSVGPFDGPQYHIAPMWAFYIQTAFMGFVFFAGTPLNGIILIAIV 206
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+YKKLRQPLNYILVN+S GFL C FSVF VFV+S GYFVFG+H+CALE FLG++AGLV
Sbjct: 207 KYKKLRQPLNYILVNISAAGFLFCTFSVFTVFVSSAQGYFVFGKHICALEAFLGSLAGLV 386
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
TGWSLAFLA ERYIVICKPFGNFRF++KHA VV ATW IGIGVS+PPFFGWSR+IPEGL
Sbjct: 387 TGWSLAFLAMERYIVICKPFGNFRFNAKHASLVVAATWVIGIGVSVPPFFGWSRYIPEGL 566
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
CSCGPDWYTVGTKYRSE YTWFLFIFCF+VPL++I FSY+QLL AL+AVAAQQQESATT
Sbjct: 567 GCSCGPDWYTVGTKYRSEYYTWFLFIFCFMVPLTIIIFSYSQLLSALRAVAAQQQESATT 746
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
QKA FC CYVPYAA AMYMVN RNHG+DLR+VTIP+FFSKSAC+YNP
Sbjct: 747 QKAEREVSRMVVVMVGSFCTCYVPYAALAMYMVNYRNHGIDLRMVTIPAFFSKSACVYNP 926
Query: 301 IIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
IIYCFMNKQF+ CIM+MVCGK M+D+S+ +SQKTEVS+VSS+QV P+
Sbjct: 927 IIYCFMNKQFRGCIMEMVCGKPMSDDSEASTSQKTEVSSVSSSQVSPS 1070
>emb|AJ277922.1|SCA277922 Serinus canaria ops1 gene for UV-sensitive opsin, genomic RNA
Length = 1106
Score = 558 bits (1439), Expect = e-157
Identities = 259/345 (75%), Positives = 293/345 (84%), Gaps = 1/345 (0%)
Frame = +1
Query: 4 MSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
M EEEFYLFKN SSVGPWDGPQYHIAP+WAFYLQ FMG VF+ G PLNA+VL+ T++YK
Sbjct: 1 MDEEEFYLFKNQSSVGPWDGPQYHIAPMWAFYLQTIFMGLVFVAGTPLNAIVLIVTVKYK 180
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLRQPLNYILVN+S G + C+F +F VFVAS GYFVFG+H+C EGF G G+VTGW
Sbjct: 181 KLRQPLNYILVNISVSGLMCCVFCIFTVFVASSQGYFVFGKHMCRFEGFAGATGGMVTGW 360
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLAFLAFERYIVICKPFGNFRF+S+HAL VV ATW IG+GV+IPPFFGWSR+IPEGLQCS
Sbjct: 361 SLAFLAFERYIVICKPFGNFRFNSRHALLVVAATWIIGVGVAIPPFFGWSRYIPEGLQCS 540
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPDWYTVGTKY+SE YTWFLFIFCFI+PLSLI FSY+QLL AVAAQQQESATTQKA
Sbjct: 541 CGPDWYTVGTKYKSEYYTWFLFIFCFIIPLSLIIFSYSQLLSPCGAVAAQQQESATTQKA 720
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
FC+CYVPYAA AMYMVNNR HG+DLRLVTIP+FFSKS+C+YNPIIY
Sbjct: 721 EREVSRMVVVMVGSFCMCYVPYAALAMYMVNNREHGIDLRLVTIPAFFSKSSCVYNPIIY 900
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSS-QKTEVSTVSSTQVGP 347
CFMNKQF+ACIM+ VCG+ M+D+SD SS Q+TEVS+VSS+QVGP
Sbjct: 901 CFMNKQFRACIMETVCGRPMSDDSDVSSSAQRTEVSSVSSSQVGP 1035
>gb|AY024356.1| Gekko gecko SWS1 opsin mRNA, complete cds
Length = 1073
Score = 558 bits (1437), Expect = e-157
Identities = 261/349 (74%), Positives = 301/349 (85%), Gaps = 2/349 (0%)
Frame = +1
Query: 2 RKMS-EEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
R+MS EE+FYL+ NISSVGP+DGPQYHIAP+WAFY Q AFMG VF +G PLNA++L A +
Sbjct: 10 RRMSGEEDFYLYANISSVGPFDGPQYHIAPMWAFYFQTAFMGFVFFVGTPLNAIILFAIV 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+YKKLRQPLNYILVN+S GFL C+ +VF VF++S GYF+FG+H+CALE FLG++AGLV
Sbjct: 190 KYKKLRQPLNYILVNISAAGFLFCVVAVFTVFISSSQGYFIFGKHICALEAFLGSLAGLV 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
TGWSLAFLA ERYIVICKPFGNFRFS+KHA VV ATW IGIGVSIPP+FGWSRFIPEGL
Sbjct: 370 TGWSLAFLALERYIVICKPFGNFRFSAKHASLVVAATWFIGIGVSIPPYFGWSRFIPEGL 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCGPDWYTVGTKY SE YTWFLF+ CFIVPLS+I FSY+QLL AL+AVAAQQQESATT
Sbjct: 550 QCSCGPDWYTVGTKYYSEYYTWFLFVLCFIVPLSIIVFSYSQLLSALRAVAAQQQESATT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
QKA FC+CYVPYAA AMYMVNNRNHG+DLR+VTIP+FFSKS+C+YNP
Sbjct: 730 QKAEREVSRMVVVMVGSFCLCYVPYAALAMYMVNNRNHGIDLRMVTIPAFFSKSSCVYNP 909
Query: 301 IIYCFMNKQFQACIMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGPN 348
IIYCFMNKQF+ CI++MVCGK M +ES+ S SQKTEVS+VSS+QVGP+
Sbjct: 910 IIYCFMNKQFRGCILEMVCGKTMAEESEVSSASQKTEVSSVSSSQVGPS 1056
>gb|M92039.1|CHKVSCOC Gallus gallus violet sensitive cone opsin mRNA, complete cds
Length = 1408
Score = 557 bits (1435), Expect = e-157
Identities = 263/344 (76%), Positives = 296/344 (85%), Gaps = 1/344 (0%)
Frame = +3
Query: 5 SEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKK 64
S+++FYLF N S GPWDGPQYHIAP WAFYLQ AFMG VF +G PLNA+VL T+RYK+
Sbjct: 108 SDDDFYLFTNGSVPGPWDGPQYHIAPPWAFYLQTAFMGIVFAVGTPLNAVVLWVTVRYKR 287
Query: 65 LRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWS 124
LRQPLNYILVN+S GF+ C+ SVF VFVAS GYFVFG+ VC LE F+GT GLVTGWS
Sbjct: 288 LRQPLNYILVNISASGFVSCVLSVFVVFVASARGYFVFGKRVCELEAFVGTHGGLVTGWS 467
Query: 125 LAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSC 184
LAFLAFERYIVICKPFGNFRFSS+HAL VV+ATW IG+GV +PPFFGWSR++PEGLQCSC
Sbjct: 468 LAFLAFERYIVICKPFGNFRFSSRHALLVVVATWLIGVGVGLPPFFGWSRYMPEGLQCSC 647
Query: 185 GPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAX 244
GPDWYTVGTKYRSE YTWFLFIFCFIVPLSLI FSY+QLL AL+AVAAQQQESATTQKA
Sbjct: 648 GPDWYTVGTKYRSEYYTWFLFIFCFIVPLSLIIFSYSQLLSALRAVAAQQQESATTQKAE 827
Query: 245 XXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYC 304
FC+CYVPYAA AMYMVNNR+HGLDLRLVTIP+FFSKSAC+YNPIIYC
Sbjct: 828 REVSRMVVVMVGSFCLCYVPYAALAMYMVNNRDHGLDLRLVTIPAFFSKSACVYNPIIYC 1007
Query: 305 FMNKQFQACIMKMVCGKAMTDESD-TCSSQKTEVSTVSSTQVGP 347
FMNKQF+ACIM+ VCGK +TD+SD + S+Q+TEVS+VSS+QVGP
Sbjct: 1008FMNKQFRACIMETVCGKPLTDDSDASTSAQRTEVSSVSSSQVGP 1139
>gb|AF055458.1|AF055458 Tursiops truncatus short-wavelength sensitive cone opsin
pseudogene, complete sequence
Length = 1031
Score = 555 bits (1431), Expect = e-156
Identities = 270/339 (79%), Positives = 288/339 (84%)
Frame = +3
Query: 10 YLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPL 69
+LFKNI VGPWDGPQY +APVW F+L AAF G VFL+ L+A VLVATLRY+KLRQPL
Sbjct: 30 FLFKNIL-VGPWDGPQYRLAPVWGFHLHAAFTGFVFLVWRALDATVLVATLRYRKLRQPL 206
Query: 70 NYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLA 129
NYILVNVS GGF+ CIFSVF VF+ SC+GYFVFGRHVCAL FLG AGL+TGWSLAFL
Sbjct: 207 NYILVNVSLGGFIYCIFSVFVVFITSCHGYFVFGRHVCALGAFLGRTAGLLTGWSLAFLV 386
Query: 130 FERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWY 189
FERYI+ICKPFGNFRFSSKHAL VVLATWTIGIGVSIPPFFGWSRF PEGLQCSC
Sbjct: 387 FERYIIICKPFGNFRFSSKHALMVVLATWTIGIGVSIPPFFGWSRFAPEGLQCSC----- 551
Query: 190 TVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXX 249
TVGTKY SE YTWFLFIFC+ VPLSLICFSY+QLL +AVAAQQQE+ATTQKA
Sbjct: 552 TVGTKYYSEYYTWFLFIFCYTVPLSLICFSYSQLLGVFRAVAAQQQEAATTQKAGREVSH 731
Query: 250 XXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQ 309
FC+CY PYAA AMY+VNN NHG+DLR VTIPSFFSKSACIYNPIIYCFMNKQ
Sbjct: 732 KVVMMVGSFCLCYTPYAALAMYIVNNHNHGVDLRFVTIPSFFSKSACIYNPIIYCFMNKQ 911
Query: 310 FQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
FQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN
Sbjct: 912 FQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 1028
>dbj|AB052889.1|AB052889 Cynops pyrrhogaster mRNA for Cp-S opsin, complete cds
Length = 1917
Score = 555 bits (1430), Expect = e-156
Identities = 261/348 (75%), Positives = 291/348 (83%), Gaps = 1/348 (0%)
Frame = +1
Query: 2 RKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLR 61
R + +++FYLFKNIS VGPWDGPQYHIAP W FY Q AFMG VF +G PLNA+VL+ T++
Sbjct: 13 RMVGDDDFYLFKNISKVGPWDGPQYHIAPAWTFYFQTAFMGFVFFVGTPLNAIVLIVTVK 192
Query: 62 YKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVT 121
YKKLRQPLNYILVNVS GF CIFSVF VFVAS GYF+FG+ +C +E FLG+V+GLVT
Sbjct: 193 YKKLRQPLNYILVNVSLAGFTFCIFSVFSVFVASSQGYFIFGKFMCEMEAFLGSVSGLVT 372
Query: 122 GWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQ 181
GWSLAFLA ERYIVICKP GNFRF+SKHAL +VL TW IG VSI P GWSR+IPEGLQ
Sbjct: 373 GWSLAFLAIERYIVICKPMGNFRFASKHALMIVLTTWVIGFSVSIGPLVGWSRYIPEGLQ 552
Query: 182 CSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQ 241
CSCGPDWYTVGTKY SE+YTWFLFIFCFI+PLSLICF Y+QLL AL+AVAAQQQESATTQ
Sbjct: 553 CSCGPDWYTVGTKYNSETYTWFLFIFCFIIPLSLICFCYSQLLGALRAVAAQQQESATTQ 732
Query: 242 KAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
KA FCVCYVPYAA AMYMVNNRNHGLDLRLVTIP+FFSKSAC+YNPI
Sbjct: 733 KAEREVTRMVIVMVASFCVCYVPYAAMAMYMVNNRNHGLDLRLVTIPAFFSKSACVYNPI 912
Query: 302 IYCFMNKQFQACIMKMVCGKAMTDESD-TCSSQKTEVSTVSSTQVGPN 348
IY FMNKQF+ACIM+ VCG +TDESD + SS KTEVS+VSS+QV PN
Sbjct: 913 IYSFMNKQFRACIMETVCGTPITDESDVSTSSNKTEVSSVSSSQVSPN 1056
>gb|AF038948.1|AF038948 Ambystoma tigrinum ultraviolet cone visual pigment mRNA, complete
cds
Length = 2133
Score = 555 bits (1429), Expect = e-156
Identities = 263/348 (75%), Positives = 290/348 (82%), Gaps = 1/348 (0%)
Frame = +3
Query: 2 RKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLR 61
R + EEEFYL+KNIS VGPWDGPQYHIAP W FY Q AFMG VF +G PLNA+VL+ T++
Sbjct: 3 RMLEEEEFYLYKNISKVGPWDGPQYHIAPAWTFYFQTAFMGFVFFVGTPLNAIVLIVTVK 182
Query: 62 YKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVT 121
YKKLRQPLNYILVNVS GF CIFSVF VFV+S GYF+FG+ +C LE FLG+V+GLVT
Sbjct: 183 YKKLRQPLNYILVNVSLAGFTFCIFSVFTVFVSSSQGYFIFGKTICELEAFLGSVSGLVT 362
Query: 122 GWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQ 181
GWSLAFLA ERYIVICKP G+FRFSSKHA VVLATW IG VSI P GWSR+IPEGLQ
Sbjct: 363 GWSLAFLAIERYIVICKPMGSFRFSSKHATMVVLATWAIGFSVSIGPLVGWSRYIPEGLQ 542
Query: 182 CSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQ 241
CSCGPDWYTVGTKY SE+YTWFLFIFCFI+PLSLICF Y QLL AL+AVAAQQQESATTQ
Sbjct: 543 CSCGPDWYTVGTKYNSETYTWFLFIFCFIIPLSLICFCYAQLLGALRAVAAQQQESATTQ 722
Query: 242 KAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
KA FC+CYVPYAA AMYMVNNRNHGLDLRLVTIP+FFSKSAC+YNPI
Sbjct: 723 KAEREVTRMVIVMVVSFCLCYVPYAAMAMYMVNNRNHGLDLRLVTIPAFFSKSACVYNPI 902
Query: 302 IYCFMNKQFQACIMKMVCGKAMTDESD-TCSSQKTEVSTVSSTQVGPN 348
IY FMNKQF+ACIM+ VCG MTDESD + SS KTEVS+VSS+QV P+
Sbjct: 903 IYSFMNKQFRACIMETVCGTPMTDESDISSSSNKTEVSSVSSSQVSPS 1046
>emb|AJ277991.1|SHU277991 Spheniscus humboldti partial mRNA for violet-sensitive opsin (ops1
gene)
Length = 975
Score = 548 bits (1413), Expect = e-154
Identities = 258/325 (79%), Positives = 285/325 (87%), Gaps = 1/325 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
PWDGPQYHIAP WAFYLQ AFMG VFL+G P NA+VLV T++YKKLRQPLNYILVN+SF
Sbjct: 1 PWDGPQYHIAPPWAFYLQTAFMGFVFLVGTPFNAVVLVVTVKYKKLRQPLNYILVNISFS 180
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
GF+ CIFSVF VFV+S GYFVFG+H+CALEGF+G GLVTGWSLAFLAFERYIVICKP
Sbjct: 181 GFISCIFSVFTVFVSSSQGYFVFGKHMCALEGFVGATGGLVTGWSLAFLAFERYIVICKP 360
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
FGNFRFSSKHA+ VV+ATW IG+GV+IPPFFGWSR+IPEGLQCSCGPDWYTVGTKY+SE
Sbjct: 361 FGNFRFSSKHAVMVVVATWVIGVGVAIPPFFGWSRYIPEGLQCSCGPDWYTVGTKYKSEY 540
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
YTW LFIFCFIVPLSLI FSY+QLL AL+AVAAQQQESATTQKA FC
Sbjct: 541 YTWLLFIFCFIVPLSLIIFSYSQLLSALRAVAAQQQESATTQKAEREVSRMVVVMVGSFC 720
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC 319
+CYVPYAA AMYMVNNRNHGLDLRLVTIP+FFSKSACIYNPIIYCFMNKQF+ACIM+ VC
Sbjct: 721 LCYVPYAALAMYMVNNRNHGLDLRLVTIPAFFSKSACIYNPIIYCFMNKQFRACIMETVC 900
Query: 320 GKAMTDESDTCSS-QKTEVSTVSST 343
GK MTD+SD SS Q+TEVS+VS++
Sbjct: 901 GKPMTDDSDVSSSAQRTEVSSVSTS 975
>gb|U23463.1|XLU23463 Xenopus laevis violet cone opsin mRNA, complete cds
Length = 2203
Score = 544 bits (1401), Expect = e-153
Identities = 253/348 (72%), Positives = 294/348 (83%), Gaps = 1/348 (0%)
Frame = +3
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+R + EE+FYLFKN+S+V P+DGPQYHIAP WAF LQA FMG VFLIG PLN +VL+ T+
Sbjct: 210 VRMLEEEDFYLFKNVSNVSPFDGPQYHIAPKWAFTLQAIFMGMVFLIGTPLNFIVLLVTI 389
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+YKKLRQPLNYILVN++ GGFL+CIFS+FPVFV+S GYF FGR C+++ F+GT+ GLV
Sbjct: 390 KYKKLRQPLNYILVNITVGGFLMCIFSIFPVFVSSSQGYFFFGRIACSIDAFVGTLTGLV 569
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
TGWSLAFLAFERYIVICKP GNF FSS HAL VV+ TW IGI VS+PPF GWSR++PEGL
Sbjct: 570 TGWSLAFLAFERYIVICKPMGNFNFSSSHALAVVICTWIIGIVVSVPPFLGWSRYMPEGL 749
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCGPDWYTVGTKYRSE YTWF+FIFCF++PLSLICFSY +LL AL+AVAAQQQESA+T
Sbjct: 750 QCSCGPDWYTVGTKYRSEYYTWFIFIFCFVIPLSLICFSYGRLLGALRAVAAQQQESAST 929
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
QKA FC+CYVPYAA AMYMV NRNHGLDLRLVTIP+FFSKS+C+YNP
Sbjct: 930 QKAEREVSRMVIFMVGSFCLCYVPYAAMAMYMVTNRNHGLDLRLVTIPAFFSKSSCVYNP 1109
Query: 301 IIYCFMNKQFQACIMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
IIY FMNKQF+ CIM+ VCG+ M+D+S S SQ+TEVSTVSS+QV P
Sbjct: 1110IIYSFMNKQFRGCIMETVCGRPMSDDSSVSSTSQRTEVSTVSSSQVSP 1253
>dbj|AB001983.1|AB001983 Rana catesbeiana mRNA for cone pigment, complete cds
Length = 1179
Score = 540 bits (1390), Expect = e-152
Identities = 250/346 (72%), Positives = 289/346 (83%), Gaps = 1/346 (0%)
Frame = +3
Query: 4 MSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
+ +E+FYLFKN+S + PWDGPQYHIAP WAF LQA FMG VF+IG PLNA+VL+ T++YK
Sbjct: 30 LGDEDFYLFKNVSDIRPWDGPQYHIAPRWAFTLQAIFMGVVFIIGTPLNAVVLLVTVKYK 209
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLRQPLNYILVN+S GG L+CIFS F VF+ S GYF FG+ CA+E F+GT+AGLVTGW
Sbjct: 210 KLRQPLNYILVNISVGGLLICIFSNFVVFINSWQGYFFFGKAFCAIEAFVGTLAGLVTGW 389
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLAFLAFERYIVICKP G F F+SKHAL VVL TW IG+GVS+PPFFGWSR+IPEGLQCS
Sbjct: 390 SLAFLAFERYIVICKPMGTFTFTSKHALAVVLTTWMIGVGVSVPPFFGWSRYIPEGLQCS 569
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPDWYTVGTKY SE YTWF+F+FCFI+PL+LIC+SY +LL AL+AVAAQQQESA+TQKA
Sbjct: 570 CGPDWYTVGTKYHSEYYTWFIFVFCFIIPLTLICYSYARLLGALRAVAAQQQESASTQKA 749
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
FC+CYVPYAA AMYM+ NRNHGLDLR VTIP+FFSKSAC+YNPIIY
Sbjct: 750 EKEVSRMVVVMVGSFCLCYVPYAAMAMYMITNRNHGLDLRFVTIPAFFSKSACVYNPIIY 929
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGPN 348
FMNKQF+ CIM+ VCG+ MTD+S S SQKTEVSTVS +QV P+
Sbjct: 930 TFMNKQFRGCIMETVCGRPMTDDSTLSSTSQKTEVSTVSHSQVSPS 1067
>gb|AY029604.1| Phodopus sungorus uv cone pigment mRNA, partial cds
Length = 789
Score = 468 bits (1203), Expect = e-130
Identities = 220/262 (83%), Positives = 233/262 (87%)
Frame = +3
Query: 44 VFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFG 103
VF G PLNA VLVATLRYKKLRQPLNYILVN+S GGFL C FSVF VF+ASC+GYF+FG
Sbjct: 3 VFFAGVPLNATVLVATLRYKKLRQPLNYILVNISLGGFLFCSFSVFTVFIASCHGYFLFG 182
Query: 104 RHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIG 163
RHVCALE FLG+VAGLVTGWSLAFLAFERYIVICKPFGN RFSSKHAL VVL TW IG+G
Sbjct: 183 RHVCALEAFLGSVAGLVTGWSLAFLAFERYIVICKPFGNVRFSSKHALIVVLVTWVIGVG 362
Query: 164 VSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQL 223
VSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF+FCFIVPLSLICFSY+QL
Sbjct: 363 VSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFLFCFIVPLSLICFSYSQL 542
Query: 224 LRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLR 283
LR L+AVAAQQQESATTQKA FCVCYVPYAA AMYMVNNRNHGLDLR
Sbjct: 543 LRTLRAVAAQQQESATTQKAEREVTLMVVVMVASFCVCYVPYAALAMYMVNNRNHGLDLR 722
Query: 284 LVTIPSFFSKSACIYNPIIYCF 305
LVTIP+FFSKS+C+YNPIIYC+
Sbjct: 723 LVTIPAFFSKSSCVYNPIIYCY 788
>gb|AF191219.1|AF191219 Metriaclima zebra putative ultraviolet sensitive opsin mRNA,
complete cds
Length = 1302
Score = 427 bits (1099), Expect = e-118
Identities = 206/341 (60%), Positives = 250/341 (72%)
Frame = +1
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+R + F+L++NIS + P++GPQY++APVWAFYLQAAFMG VF G PLN +VLVAT+
Sbjct: 7 LRVTMGKHFHLYENISKISPFEGPQYYLAPVWAFYLQAAFMGFVFFAGTPLNFIVLVATM 186
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+YKKLR PLN+ILVN+SF GF+ FSV VF+AS GY+ G +CALE +G+VAGLV
Sbjct: 187 KYKKLRVPLNFILVNISFSGFIFVTFSVSQVFLASMRGYYFLGHTLCALESAVGSVAGLV 366
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
T WSLA L+FERY+VICKPFG F+F S HAL V TW +GIG + PPFFGWSR+IPEGL
Sbjct: 367 TAWSLAVLSFERYLVICKPFGAFKFGSNHALAAVAFTWFMGIGCACPPFFGWSRYIPEGL 546
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
CSCGPDWYT +Y + SYT FL + CFI+PLS+I F Y+QLL AL+AVAAQQ ESA+T
Sbjct: 547 GCSCGPDWYTHNEQYNTTSYTHFLMVTCFIIPLSIIIFCYSQLLGALRAVAAQQAESAST 726
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
QKA F CY PYA A+Y + + D RLVTIP+FFSKSAC+YNP
Sbjct: 727 QKAEKEVSRMIIVMVGSFVTCYGPYALAALYFAYSTDENKDYRLVTIPAFFSKSACVYNP 906
Query: 301 IIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
+IY FMNKQF CIM+MV GK M + S+ S KTEVST S
Sbjct: 907 LIYVFMNKQFNGCIMEMVFGKTMDESSEV--STKTEVSTAS 1023
>dbj|AB001605.1|AB001605 Oryzias latipes mRNA for KFH-V, complete cds
Length = 1227
Score = 419 bits (1077), Expect = e-115
Identities = 203/333 (60%), Positives = 247/333 (73%)
Frame = +1
Query: 9 FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQP 68
FYL++NIS VGP+DGPQY++AP WAFYLQAAFMG VF +G PLN +VL+AT +YKKLR P
Sbjct: 25 FYLYENISKVGPYDGPQYYLAPTWAFYLQAAFMGFVFFVGTPLNFVVLLATAKYKKLRVP 204
Query: 69 LNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFL 128
LNYILVN++F GF+ FSV VF+AS GY+ FG+ +CALE +G VAGLVT WSLA L
Sbjct: 205 LNYILVNITFAGFIFVTFSVSQVFLASVRGYYFFGQTLCALEAAVGAVAGLVTSWSLAVL 384
Query: 129 AFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDW 188
+FERY+VICKPFG F+F S HAL V+ TW +G+ V PPFFGWSR+IPEGL CSCGPDW
Sbjct: 385 SFERYLVICKPFGAFKFGSNHALAAVIFTWFMGV-VRCPPFFGWSRYIPEGLGCSCGPDW 561
Query: 189 YTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXX 248
YT ++ SY+ FL + CFI P+++I FSY+QLL AL+AVAAQQ ESA+TQKA
Sbjct: 562 YTNCEEFSCASYSKFLLVTCFICPITIIIFSYSQLLGALRAVAAQQAESASTQKAEKEVS 741
Query: 249 XXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNK 308
F CY PYA A Y +++ D RLVTIP+FFSKS+C+YNP+IY FMNK
Sbjct: 742 RMIIVMVASFVTCYGPYALTAQYYAYSQDENKDYRLVTIPAFFSKSSCVYNPLIYAFMNK 921
Query: 309 QFQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
QF CIM+MV GK M + S+ S KTEVST S
Sbjct: 922 QFNGCIMEMVFGKKMEEASEV--SSKTEVSTDS 1014
>dbj|D85863.1|CAUUVSEN Carassius auratus mRNA for ultraviolet-sensitive visual pigment,
complete cds
Length = 1389
Score = 412 bits (1060), Expect = e-113
Identities = 195/333 (58%), Positives = 244/333 (72%)
Frame = +1
Query: 10 YLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPL 69
Y F N+S + P++GPQYH+AP WAFYLQAAFMG VF +G PLNA+VL T++YKKLRQPL
Sbjct: 79 YQFGNLSKISPFEGPQYHLAPKWAFYLQAAFMGFVFFVGTPLNAIVLFVTMKYKKLRQPL 258
Query: 70 NYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLA 129
NYILVN+S GGF+ FSV VF ++ GY+ FG +CA+E +G++AGLVTGWSLA LA
Sbjct: 259 NYILVNISLGGFIFDTFSVSQVFFSALRGYYFFGYTLCAMEAAMGSIAGLVTGWSLAVLA 438
Query: 130 FERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWY 189
FERY+VICKPFG+F+F AL V TW IGIG + PPF+GWSR+IPEG+ +CGPDWY
Sbjct: 439 FERYVVICKPFGSFKFGQSQALGAVALTWIIGIGCATPPFWGWSRYIPEGIGTACGPDWY 618
Query: 190 TVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXX 249
T +Y +ESYT+FL + CF++P+ +I FSY+QLL AL+AVAAQQ ESA+TQKA
Sbjct: 619 TKNEEYNTESYTYFLLVSCFMMPIMIITFSYSQLLGALRAVAAQQAESASTQKAEKEVSR 798
Query: 250 XXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQ 309
F VCY PYA A+Y + D RLV IPS FSKS+C+YNP+IY FMNKQ
Sbjct: 799 MVVVMVGSFVVCYGPYAITALYFSYAEDSNKDYRLVAIPSLFSKSSCVYNPLIYAFMNKQ 978
Query: 310 FQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
F ACIM+ V GK + + S+ S KTE S+VS+
Sbjct: 979 FNACIMETVFGKKIDESSEV--SSKTETSSVSA 1071
>gb|AF109373.1|AF109373 Danio rerio ultraviolet-sensitive opsin (uvops) mRNA, complete cds
Length = 1779
Score = 398 bits (1023), Expect = e-109
Identities = 190/331 (57%), Positives = 238/331 (71%)
Frame = +2
Query: 12 FKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNY 71
F N S V P++G QYHIAP WAFYLQAAFMG VF++G P+N +VL T++YKKLRQPLNY
Sbjct: 83 FGNASKVSPFEGEQYHIAPKWAFYLQAAFMGFVFIVGTPMNGIVLFVTMKYKKLRQPLNY 262
Query: 72 ILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFE 131
ILVN+S GF+ FSV V V + GY+ G +C++E +G++AGLVTGWSLA LAFE
Sbjct: 263 ILVNISLAGFIFDTFSVSQVSVCAARGYYSLGYTLCSMEAAMGSIAGLVTGWSLAVLAFE 442
Query: 132 RYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTV 191
RY+VICKPFG+F+F A+ V+ TW IG + PPFFGWSR+IPEGL +CGPDWYT
Sbjct: 443 RYVVICKPFGSFKFGQGQAVGAVVFTWIIGTACATPPFFGWSRYIPEGLGTACGPDWYTK 622
Query: 192 GTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXX 251
+Y SESYT+FL I CF++P+++I FSY+QLL AL+AVAAQQ ES +TQKA
Sbjct: 623 SEEYNSESYTYFLLITCFMMPMTIIIFSYSQLLGALRAVAAQQAESESTQKAEREVSRMV 802
Query: 252 XXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQ 311
F +CY PYA AMY N+ D RLV IP+FFSKS+ +YNP+IY FMNKQF
Sbjct: 803 VVMVGSFVLCYAPYAVTAMYFANSDEPNKDYRLVAIPAFFSKSSSVYNPLIYAFMNKQFN 982
Query: 312 ACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
ACIM+ V GK + + S+ S KTE S+VS+
Sbjct: 983 ACIMETVFGKKIDESSEV--SSKTETSSVSA 1069
>gb|AF191220.1|AF191220 Dimidiochromis compressiceps putative ultraviolet sensitive opsin
gene, partial cds
Length = 1444
Score = 150 bits (380), Expect(4) = 5e-99
Identities = 69/112 (61%), Positives = 89/112 (78%)
Frame = +1
Query: 7 EEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLR 66
+ F+L++NIS + P++GPQY++APVWAFYLQAAFMG VF G PLN +VLVAT++YKKLR
Sbjct: 4 KHFHLYENISKISPFEGPQYYLAPVWAFYLQAAFMGFVFFAGTPLNFIVLVATMKYKKLR 183
Query: 67 QPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
PLN+ILVN+SF GF+ FSV VF+AS GY+ G +CALE +G+VAG
Sbjct: 184 VPLNFILVNISFSGFIFVTFSVSQVFLASMRGYYFLGHTLCALESAVGSVAG 339
Score = 99.4 bits (246), Expect(4) = 5e-99
Identities = 62/152 (40%), Positives = 72/152 (46%), Gaps = 40/152 (26%)
Frame = +2
Query: 230 VAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPS 289
VAAQQ ESA+TQKA F CY PYA A+Y + + D RLVTIP+
Sbjct: 962 VAAQQAESASTQKAEKEVSRMIIVMVGSFVTCYGPYALAALYFAYSTDENKDYRLVTIPA 1141
Query: 290 FFSKSACIYNPIIYCFMNK----------------------------------------Q 309
FFSKSAC+YNP+IY FMNK Q
Sbjct: 1142 FFSKSACVYNPLIYVFMNKQVSTLR*HSAERRV*FFAAFL*QFELSLLLK***VLLFCSQ 1321
Query: 310 FQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
F CIM+MV GK M + S+ S KTEVST S
Sbjct: 1322 FNGCIMEMVFGKTMDESSEV--STKTEVSTAS 1411
Score = 93.6 bits (231), Expect(4) = 5e-99
Identities = 40/59 (67%), Positives = 47/59 (78%)
Frame = +2
Query: 117 AGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRF 175
+GLVT WSLA L+FERY+VICKPFG F+F S HAL V TW +GIG + PPFFGWSR+
Sbjct: 410 SGLVTAWSLAVLSFERYLVICKPFGAFKFGSNHALAAVAFTWFMGIGCACPPFFGWSRY 586
Score = 86.3 bits (212), Expect(4) = 5e-99
Identities = 38/64 (59%), Positives = 48/64 (74%)
Frame = +3
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQ 233
R+IPEGL CSCGPDWYT +Y + SYT FL + CFI+PLS+I F Y+QLL AL+AV+
Sbjct: 651 RYIPEGLGCSCGPDWYTHNEQYNTTSYTHFLMVTCFIIPLSIIIFCYSQLLGALRAVSQS 830
Query: 234 QQES 237
+S
Sbjct: 831 INQS 842
>gb|AF191223.1|AF191223 Labeotropheus fuelleborni putative ultraviolet sensitive opsin
gene, partial cds
Length = 1436
Score = 156 bits (395), Expect(3) = 1e-96
Identities = 98/253 (38%), Positives = 116/253 (45%), Gaps = 85/253 (33%)
Frame = +3
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAV--- 230
R+IPEGL CSCGPDWYT +Y + SYT FL + CFI+PLS+I F Y+QLL AL+AV
Sbjct: 651 RYIPEGLGCSCGPDWYTHNEQYNTTSYTHFLMVTCFIIPLSIIIFCYSQLLGALRAVSQS 830
Query: 231 ------------------------------------------AAQQQESATTQKAXXXXX 248
AAQQ ESA+TQKA
Sbjct: 831 INQSINQSASTK*LTESLCW*CVWSLRTSLH*RLALLFPVQVAAQQAESASTQKAEKEVS 1010
Query: 249 XXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNK 308
F CY PYA A+Y + + D RLVTIP+FFSKSAC+YNP+IY FMNK
Sbjct: 1011RMIIVMVGSFVTCYGPYALAALYFAYSTDENKDYRLVTIPAFFSKSACVYNPLIYVFMNK 1190
Query: 309 ----------------------------------------QFQACIMKMVCGKAMTDESD 328
QF CIM+MV GK M + S+
Sbjct: 1191QVSTLR*HSAERRV*FFAAFL*QFELSLLLK***VLLFCSQFNGCIMEMVFGKTMDESSE 1370
Query: 329 TCSSQKTEVSTVS 341
S KTEVST S
Sbjct: 1371V--STKTEVSTAS 1403
Score = 150 bits (380), Expect(3) = 1e-96
Identities = 69/112 (61%), Positives = 89/112 (78%)
Frame = +1
Query: 7 EEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLR 66
+ F+L++NIS + P++GPQY++APVWAFYLQAAFMG VF G PLN +VLVAT++YKKLR
Sbjct: 4 KHFHLYENISKISPFEGPQYYLAPVWAFYLQAAFMGFVFFAGTPLNFIVLVATMKYKKLR 183
Query: 67 QPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
PLN+ILVN+SF GF+ FSV VF+AS GY+ G +CALE +G+VAG
Sbjct: 184 VPLNFILVNISFSGFIFVTFSVSQVFLASMRGYYFLGHTLCALESAVGSVAG 339
Score = 93.6 bits (231), Expect(3) = 1e-96
Identities = 40/59 (67%), Positives = 47/59 (78%)
Frame = +2
Query: 117 AGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRF 175
+GLVT WSLA L+FERY+VICKPFG F+F S HAL V TW +GIG + PPFFGWSR+
Sbjct: 410 SGLVTAWSLAVLSFERYLVICKPFGAFKFGSNHALAAVAFTWFMGIGCACPPFFGWSRY 586
>gb|AF191222.1|AF191222 Metriaclima zebra putative ultraviolet sensitive opsin gene,
partial cds
Length = 1448
Score = 155 bits (391), Expect(3) = 3e-96
Identities = 98/257 (38%), Positives = 116/257 (45%), Gaps = 89/257 (34%)
Frame = +3
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAV--- 230
R+IPEGL CSCGPDWYT +Y + SYT FL + CFI+PLS+I F Y+QLL AL+AV
Sbjct: 651 RYIPEGLGCSCGPDWYTHNEQYNTTSYTHFLMVTCFIIPLSIIIFCYSQLLGALRAVSQS 830
Query: 231 ----------------------------------------------AAQQQESATTQKAX 244
AAQQ ESA+TQKA
Sbjct: 831 INQSINQSINQSASTK*LTESLCW*CVWSLRTSLH*SLALLFPLQVAAQQAESASTQKAE 1010
Query: 245 XXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYC 304
F CY PYA A+Y + + D RLVTIP+FFSKSAC+YNP+IY
Sbjct: 1011KEVSRMIIVMVGSFVTCYGPYALAALYFAYSTDENKDYRLVTIPAFFSKSACVYNPLIYV 1190
Query: 305 FMNK----------------------------------------QFQACIMKMVCGKAMT 324
FMNK QF CIM+MV GK M
Sbjct: 1191FMNKQVSTLR*HSAERRV*FFAAFL*QFELSLLLK***VLLFCSQFNGCIMEMVFGKTMD 1370
Query: 325 DESDTCSSQKTEVSTVS 341
+ S+ S KTEVST S
Sbjct: 1371ESSEV--STKTEVSTAS 1415
Score = 150 bits (380), Expect(3) = 3e-96
Identities = 69/112 (61%), Positives = 89/112 (78%)
Frame = +1
Query: 7 EEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLR 66
+ F+L++NIS + P++GPQY++APVWAFYLQAAFMG VF G PLN +VLVAT++YKKLR
Sbjct: 4 KHFHLYENISKISPFEGPQYYLAPVWAFYLQAAFMGFVFFAGTPLNFIVLVATMKYKKLR 183
Query: 67 QPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
PLN+ILVN+SF GF+ FSV VF+AS GY+ G +CALE +G+VAG
Sbjct: 184 VPLNFILVNISFSGFIFVTFSVSQVFLASMRGYYFLGHTLCALESAVGSVAG 339
Score = 93.6 bits (231), Expect(3) = 3e-96
Identities = 40/59 (67%), Positives = 47/59 (78%)
Frame = +2
Query: 117 AGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRF 175
+GLVT WSLA L+FERY+VICKPFG F+F S HAL V TW +GIG + PPFFGWSR+
Sbjct: 410 SGLVTAWSLAVLSFERYLVICKPFGAFKFGSNHALAAVAFTWFMGIGCACPPFFGWSRY 586
>gb|AF191221.1|AF191221 Oreochromis niloticus putative ultraviolet sensitive opsin gene,
partial cds
Length = 1448
Score = 150 bits (379), Expect(3) = 2e-93
Identities = 96/257 (37%), Positives = 115/257 (44%), Gaps = 89/257 (34%)
Frame = +3
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAV--- 230
R+IPEGL CSCGPDWYT +Y + SY +FL I CFI PL++I F Y+QLL AL+AV
Sbjct: 651 RYIPEGLGCSCGPDWYTHNEEYNTTSYIYFLLITCFIFPLTIIIFCYSQLLGALRAVSQS 830
Query: 231 ----------------------------------------------AAQQQESATTQKAX 244
AAQQ ESA+TQKA
Sbjct: 831 INQSINQSINQSINTK*LTESLCWLCVWSLRTSLH*SLALLFPLQVAAQQAESASTQKAE 1010
Query: 245 XXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYC 304
F CY PYA A+Y + + D RLVTIP+FFSKS+C+YNP+IY
Sbjct: 1011KEVSRMIIVMVGSFVTCYGPYALAALYFAYSTDENKDYRLVTIPAFFSKSSCVYNPLIYV 1190
Query: 305 FMNKQ----------------------------------------FQACIMKMVCGKAMT 324
FMNKQ F CIM+MV GK M
Sbjct: 1191FMNKQVSTLR*HSAERRV*FFAAFL*QFELALPLK**RVLLFCS*FNGCIMEMVFGKKMD 1370
Query: 325 DESDTCSSQKTEVSTVS 341
+ S+ S KTEVST S
Sbjct: 1371ESSEV--STKTEVSTAS 1415
Score = 146 bits (368), Expect(3) = 2e-93
Identities = 67/110 (60%), Positives = 85/110 (76%)
Frame = +1
Query: 9 FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQP 68
F+L++NIS V P++GPQY++AP WAFYLQAAFMG V G PLN +VLVAT++YKKLR P
Sbjct: 10 FHLYENISKVSPFEGPQYYLAPTWAFYLQAAFMGFVLFAGTPLNFVVLVATMKYKKLRVP 189
Query: 69 LNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
LN+ILVN+SF GF+ FSV VF+AS GY+ G +CALE +G +AG
Sbjct: 190 LNFILVNISFSGFIFVTFSVSQVFLASMRGYYFLGHTLCALEAAVGAIAG 339
Score = 93.2 bits (230), Expect(3) = 2e-93
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = +2
Query: 117 AGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRF 175
+GLVT WSLA L+FERY+VICKPFG F+F S HAL V TW +G+G + PPFFGWSR+
Sbjct: 410 SGLVTAWSLAVLSFERYLVICKPFGAFKFGSNHALAAVAFTWFMGVGCACPPFFGWSRY 586
>gb|AF222332.1|AF222332 Taeniopygia guttata SWS2 opsin mRNA, complete cds
Length = 1130
Score = 339 bits (870), Expect = 2e-91
Identities = 171/355 (48%), Positives = 231/355 (64%), Gaps = 8/355 (2%)
Frame = +2
Query: 1 MRKMSEEEFYL-----FKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMV 55
MR E+FY+ N++++ P+ PQ H+ F AAFM + L+G P+NA+
Sbjct: 35 MRDELPEDFYIPMSLETPNLTALSPFLVPQTHLGSPGIFKAMAAFMFLLVLLGVPINALT 214
Query: 56 LVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGT 115
++ T +YKKLR LNYILVN++ L+ F + YF G C +EGF T
Sbjct: 215 VLCTAKYKKLRSHLNYILVNLAVANLLVVCVGSTTAFYSFSQMYFALGPLACKIEGFTAT 394
Query: 116 VAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRF 175
+ G+V+ WSLA +AFER++VICKP GNF F HA+ TW G+ S+PP FGWSR+
Sbjct: 395 LGGMVSLWSLAVVAFERFLVICKPLGNFTFRGSHAVLGCAITWIFGLIASLPPLFGWSRY 574
Query: 176 IPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQ 235
IPEGLQCSCGPDWYT K+ +ESY FLF FCF PL++I FSY +LL L+AVA QQ+
Sbjct: 575 IPEGLQCSCGPDWYTTDNKWNNESYVIFLFCFCFGFPLTVIVFSYGRLLLTLRAVAKQQE 754
Query: 236 ESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSA 295
+SA+TQKA F VC++PY +FA+++V +R H DL L +IPS FSK++
Sbjct: 755 QSASTQKAEREVTKMVVVMVLGFLVCWLPYCSFALWVVTHRGHPFDLGLASIPSVFSKAS 934
Query: 296 CIYNPIIYCFMNKQFQACIMKMV-CGKA-MTDESDTC-SSQKTEVSTVSSTQVGP 347
+YNPIIY FMNKQF++C++K+V CG++ DE D SSQ T+VS+VSS+QV P
Sbjct: 935 TVYNPIIYVFMNKQFRSCMLKLVFCGRSPFGDEDDVSGSSQATQVSSVSSSQVSP 1099
>dbj|AB010085.1|AB010085 Rana catesbeiana mRNA for visual pigment, complete cds
Length = 2621
Score = 337 bits (863), Expect = 1e-90
Identities = 160/336 (47%), Positives = 223/336 (65%), Gaps = 2/336 (0%)
Frame = +3
Query: 14 NISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL 73
NI+++ P+ PQ H+ F +AFM + GFPLN + ++ T++YKKLR LNYIL
Sbjct: 189 NITALSPFLVPQSHLGTPGMFMSMSAFMLFTIIFGFPLNVLTVICTIKYKKLRSHLNYIL 368
Query: 74 VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
VN++ ++ F F + YF G C +EGF T+ G+V+ WSLA +AFER+
Sbjct: 369 VNLAVANLIVICFGSTTAFYSFSQMYFALGTLACKIEGFTATLGGMVSLWSLAVVAFERF 548
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
+VICKP G+F F HA+ + TW IG+ + PP GWSR+IPEGLQCSCGPDWYTV
Sbjct: 549 LVICKPMGSFTFRENHAILGCIFTWVIGLVAASPPLLGWSRYIPEGLQCSCGPDWYTVNN 728
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXX 253
K+ +ESY F+F FCF PL++I FSY +LL L AVA QQ++SA+TQKA
Sbjct: 729 KWNNESYVIFIFCFCFGFPLAVIVFSYGRLLLTLHAVAKQQEQSASTQKAEREVTRMVIM 908
Query: 254 XXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC 313
F VC++PYA+FA++ V +R DLR+ +IPS FSK++ +YNP IY FMN+QF++C
Sbjct: 909 MIAGFLVCWLPYASFALWAVTHRGETFDLRMASIPSVFSKASTVYNPFIYIFMNRQFRSC 1088
Query: 314 IMKMV-CGK-AMTDESDTCSSQKTEVSTVSSTQVGP 347
+MK++ CGK + D+ DT +S T+VS+VS++QV P
Sbjct: 1089MMKLIFCGKNPLGDDDDTSASGSTQVSSVSTSQVAP 1196
>gb|AF038946.1|AF038946 Ambystoma tigrinum blue cone visual pigment mRNA, complete cds
Length = 1479
Score = 333 bits (855), Expect = 1e-89
Identities = 162/337 (48%), Positives = 220/337 (65%), Gaps = 3/337 (0%)
Frame = +2
Query: 14 NISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL 73
NIS++ P+ PQ H+ F AAFM + GFP+N + ++ T++YKKLR LNYIL
Sbjct: 248 NISALSPFLVPQTHLGSPAVFMSLAAFMFLKVVFGFPINLLTVICTIKYKKLRSHLNYIL 427
Query: 74 VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
VN++ L+ F ++ YF G C +EGF T+ G+V WSLA +AFER+
Sbjct: 428 VNLAIANLLVVSVGSTVAFYSNAQMYFALGPLACKVEGFTATLGGMVGLWSLAVVAFERF 607
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
+VICKP G+F F HA+ TW +G+ + PP GWSR+IPEGL CSCGPDWYTV
Sbjct: 608 LVICKPLGSFTFRESHAIMGCAFTWIVGLAAATPPLLGWSRYIPEGLHCSCGPDWYTVNN 787
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXX 253
K+ +ESY FLF FCF VPL+ I FSY +LL L+AVA QQ++SATTQKA
Sbjct: 788 KWNNESYVLFLFCFCFGVPLTTIIFSYGRLLITLRAVAKQQEQSATTQKAEREVTRMVIF 967
Query: 254 XXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC 313
F VC++PYA+FA++ +R DLR+ +IPS FSK++ +YNP+IY FMN+QF++C
Sbjct: 968 MVAGFLVCWLPYASFALWATTHRGELFDLRMASIPSVFSKASTVYNPVIYIFMNRQFRSC 1147
Query: 314 IMKMV-CGKAM--TDESDTCSSQKTEVSTVSSTQVGP 347
+MK++ CGK DE + S+Q T+VS+VSS+QV P
Sbjct: 1148MMKLIFCGKNPFGEDEDTSVSAQSTQVSSVSSSQVAP 1258
>gb|L11864.1|CRABLU Carassius auratus blue cone opsin mRNA, complete cds
Length = 1257
Score = 333 bits (853), Expect = 2e-89
Identities = 159/340 (46%), Positives = 217/340 (63%), Gaps = 5/340 (1%)
Frame = +3
Query: 7 EEFYL-----FKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLR 61
E+FY+ N+S+ P+ PQ H+ F + FM +F+ G +N + ++ T++
Sbjct: 36 EDFYIPIPLDINNLSAYSPFLVPQDHLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQ 215
Query: 62 YKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVT 121
+KKLR LNYILVN+S + IF F + N YF+FG C +EGFL T+ G+V
Sbjct: 216 FKKLRSHLNYILVNLSIANLFVAIFGSPLSFYSFFNRYFIFGATACKIEGFLATLGGMVG 395
Query: 122 GWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQ 181
WSLA +AFER++VICKP GNF F + HA+ + W + S+PP FGWSR+IPEGLQ
Sbjct: 396 LWSLAVVAFERWLVICKPLGNFTFKTPHAIAGCILPWISALAASLPPLFGWSRYIPEGLQ 575
Query: 182 CSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQ 241
CSCGPDWYT KY +ESY FLF FCF VP I F Y QLL LK A Q +SA+TQ
Sbjct: 576 CSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSASTQ 755
Query: 242 KAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
KA F VC+ PYA+F++++V++R DLR+ TIPS SK++ +YNP+
Sbjct: 756 KAEREVTKMVVVMVLGFLVCWAPYASFSLWIVSHRGEEFDLRMATIPSCLSKASTVYNPV 935
Query: 302 IYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
IY MNKQF++C+MKMVCGK + ++ + SSQ T+VS+V+
Sbjct: 936 IYVLMNKQFRSCMMKMVCGKNIEEDEASTSSQVTQVSSVA 1055
>gb|M92037.1|CHKBSCOA Gallus gallus blue sensitive cone opsin mRNA, complete cds
Length = 1693
Score = 330 bits (845), Expect = 1e-88
Identities = 163/349 (46%), Positives = 224/349 (63%), Gaps = 8/349 (2%)
Frame = +1
Query: 7 EEFYL-----FKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLR 61
E+FY+ NI+++ P+ PQ H+ F AAFM + +G P+N + + T R
Sbjct: 115 EDFYIPMALDAPNITALSPFLVPQTHLGSPGLFRAMAAFMFLLIALGVPINTLTIFCTAR 294
Query: 62 YKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVT 121
++KLR LNYILVN++ L+ + + YF G C +EGF T+ G+V+
Sbjct: 295 FRKLRSHLNYILVNLALANLLVILVGSTTACYSFSQMYFALGPTACKIEGFAATLGGMVS 474
Query: 122 GWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQ 181
WSLA +AFER++VICKP GNF F HA+ +ATW +G S PP FGWSR+IPEGLQ
Sbjct: 475 LWSLAVVAFERFLVICKPLGNFTFRGSHAVLGCVATWVLGFVASAPPLFGWSRYIPEGLQ 654
Query: 182 CSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQ 241
CSCGPDWYT K+ +ESY FLF FCF VPL++I FSY +LL L+AVA QQ++SATTQ
Sbjct: 655 CSCGPDWYTTDNKWHNESYVLFLFTFCFGVPLAIIVFSYGRLLITLRAVARQQEQSATTQ 834
Query: 242 KAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
KA F VC+ PY AFA+++V +R ++ L +IPS FSKS+ +YNP+
Sbjct: 835 KADREVTKMVVVMVLGFLVCWAPYTAFALWVVTHRGRSFEVGLASIPSVFSKSSTVYNPV 1014
Query: 302 IYCFMNKQFQACIMKMV-CGKAM--TDESDTCSSQKTEVSTVSSTQVGP 347
IY MNKQF++C++K++ CG++ DE + SSQ T+VS+VSS+ V P
Sbjct: 1015IYVLMNKQFRSCMLKLLFCGRSPFGDDEDVSGSSQATQVSSVSSSHVAP 1161
>gb|AF074044.1|AF074044 Phelsuma madagascariensis longintinue opsin visual pigment (dg2)
mRNA, complete cds
Length = 1547
Score = 325 bits (834), Expect = 3e-87
Identities = 162/332 (48%), Positives = 211/332 (62%), Gaps = 4/332 (1%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F + +M + L+G PLN + L T ++KKLRQPLNYILVN++
Sbjct: 84 PYEYPQYYLAEPWKFKALSLYMFFLILVGLPLNGLTLFVTFQHKKLRQPLNYILVNLAVA 263
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
L+ I F S GYFVFG CA EGF T+ G V WSL LA ERYIVICKP
Sbjct: 264 NLLMVICGFTVTFYTSWYGYFVFGPMGCAFEGFFATIGGQVALWSLVVLAIERYIVICKP 443
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GNFRFSS HA+ + TW + + PP FGWSRFIPEG+QCSCGPD+YT+ + +ES
Sbjct: 444 MGNFRFSSSHAMMGISFTWFMALCCGGPPLFGWSRFIPEGMQCSCGPDYYTLNPDFHNES 623
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y +LF F+ P+ +I FSY +L+ ++ AAQQQESATTQKA F
Sbjct: 624 YVIYLFTVHFLTPMIIIFFSYGRLVCKVREAAAQQQESATTQKAEKEVTRMVILMVMGFL 803
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
V + PYA A ++ NN+ + +T+P+FFSKS+CIYNPIIY +NKQF+ C++ +
Sbjct: 804 VAWTPYATVACWIFNNKGAEFSVTFMTVPAFFSKSSCIYNPIIYVLLNKQFRNCMVTTIC 983
Query: 319 CGK---AMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK D S + S KTEVS+VSS+QV P
Sbjct: 984 CGKNPFGDEDASSSVSQSKTEVSSVSSSQVAP 1079
>gb|AF247129.1|AF247129 Dimidiochromis compressiceps putative blue sensitive opsin SWS-2A
mRNA, complete cds
Length = 1359
Score = 323 bits (827), Expect = 2e-86
Identities = 157/327 (48%), Positives = 205/327 (62%)
Frame = +1
Query: 14 NISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL 73
NI+S+ P+ PQ H+ FY A FM +F+ G +NA+ + T++YKKLR LNYIL
Sbjct: 205 NITSLSPFLVPQDHLGDTATFYAMAVFMLFIFIFGTFINALTIACTIQYKKLRSHLNYIL 384
Query: 74 VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
+N++ L+ F YF+FG C +EGF+ T+ G+V+ WSLA +AFER+
Sbjct: 385 LNLAAANLLVSTVGSFTACCTFSFRYFIFGALACKIEGFMVTLGGMVSLWSLAVIAFERW 564
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
+VICKP GNF F HA+ TW + S PP FGWSR+IPEGLQCSCGPDWYT
Sbjct: 565 LVICKPLGNFIFKPDHAIACCAFTWFFAVFASAPPLFGWSRYIPEGLQCSCGPDWYTTNN 744
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXX 253
KY +ESY FLF FCF VPL+ I F Y+QLL LK A Q ESA+TQKA
Sbjct: 745 KYNNESYVMFLFCFCFAVPLTTIIFCYSQLLITLKMAAKAQAESASTQKAEREVTRMVVI 924
Query: 254 XXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC 313
F VC++PYA+FA+++VNNR DLRL TIPS FSK++ +YNP+IY NKQF+ C
Sbjct: 925 MVLGFLVCWMPYASFALWVVNNRGQSFDLRLATIPSCFSKASAVYNPVIYVVFNKQFRTC 1104
Query: 314 IMKMVCGKAMTDESDTCSSQKTEVSTV 340
++ M+ G +E + + TEVS V
Sbjct: 1105MLAMM-GMGGGEEESSTTQSVTEVSKV 1182
>gb|AF317674.1|AF317674 Metriaclima zebra putative blue sensitive opsin SWS-2B mRNA,
complete cds
Length = 1178
Score = 322 bits (824), Expect = 4e-86
Identities = 154/328 (46%), Positives = 210/328 (63%)
Frame = +1
Query: 14 NISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL 73
NI++ P+ PQ H+ FY +AFM +++ G +N + + T++YKKLR LNYIL
Sbjct: 115 NITAFSPYLVPQDHLGSPMIFYSMSAFMFFLWVAGTIINVLTIACTVQYKKLRSHLNYIL 294
Query: 74 VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
VN++ L+ F F+ Y G C +EGF T+ G+V+ WSLA +AFER+
Sbjct: 295 VNLAVANLLVSSVGSFTCFICFAFKYMFPGPIACKIEGFTATLGGMVSLWSLAVVAFERW 474
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
+V+CKP GNF F S HA+ TW G+ ++PP FGWSR+IPEG+QCSCGPDWYT G
Sbjct: 475 LVVCKPLGNFAFKSSHAIACCGLTWVCGLSAALPPLFGWSRYIPEGMQCSCGPDWYTTGN 654
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXX 253
K+ +E+Y FLF FCF VP S I F Y+QLL LKA Q ESA+TQKA
Sbjct: 655 KFNNETYVMFLFCFCFAVPFSTIVFCYSQLLFMLKAAVKAQAESASTQKAEKEVTRMVVI 834
Query: 254 XXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC 313
F VC++PYA+FA+++VNNR DLRL TIPS FSK++ +YNP+IY +NKQF++C
Sbjct: 835 MVLGFLVCWMPYASFAIWVVNNRGQPFDLRLATIPSCFSKASTVYNPVIYILLNKQFRSC 1014
Query: 314 IMKMVCGKAMTDESDTCSSQKTEVSTVS 341
I +M+ G + D+ ++ S TEVS V+
Sbjct: 1015IRQML-GMSGGDDEESSSQSTTEVSKVA 1095
>dbj|AB001602.1|AB001602 Oryzias latipes mRNA for KFH-B, complete cds
Length = 1244
Score = 322 bits (824), Expect = 4e-86
Identities = 155/327 (47%), Positives = 205/327 (62%)
Frame = +1
Query: 14 NISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL 73
N++++ P+ PQ H+ FY +A M +F+ G +N + + TL+YKKLR LNYIL
Sbjct: 175 NVTALSPFLVPQDHLGSPTIFYSMSALMFVLFVAGTAINLLTIACTLQYKKLRSHLNYIL 354
Query: 74 VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
VN++ ++ FV Y V G C +EGF + G+V+ WSLA +AFER+
Sbjct: 355 VNMAVANLIVASTGSSTCFVCFAFKYMVLGPLGCKIEGFTAALGGMVSLWSLAVIAFERW 534
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
+VICKP GNF F S+HAL TW G+ S+PP GWSR+IPEG+QCSCGPDWYT G
Sbjct: 535 LVICKPLGNFVFKSEHALLCCALTWVCGLCASVPPLVGWSRYIPEGMQCSCGPDWYTTGN 714
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXX 253
K+ +ES+ FLF FCF VP S+I F Y+QLL LK A Q +SA+TQKA
Sbjct: 715 KFNNESFVMFLFCFCFAVPFSIIVFCYSQLLFTLKMAAKAQADSASTQKAEKEVTRMVVV 894
Query: 254 XXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC 313
F VCYVPYA+FA++++NNR DLRL TIPS SK++ +YNP+IY +NKQF+ C
Sbjct: 895 MVVAFLVCYVPYASFALWVINNRGQTFDLRLATIPSCVSKASTVYNPVIYVLLNKQFRLC 1074
Query: 314 IMKMVCGKAMTDESDTCSSQKTEVSTV 340
+ KM+ A DE + S TEVS V
Sbjct: 1075MKKMLGMSADEDEESSTSQSTTEVSKV 1155
>gb|AF222330.1|AF222330 Taeniopygia guttata RH2 opsin mRNA, complete cds
Length = 1117
Score = 320 bits (819), Expect = 2e-85
Identities = 156/332 (46%), Positives = 211/332 (62%), Gaps = 4/332 (1%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + L ++ + GFP+N + L+ T ++KKLRQPLNYILVN++
Sbjct: 96 PFEYPQYYLAEPWKYRLVCCYIFFLISTGFPINFLTLLVTFKHKKLRQPLNYILVNLAVA 275
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ F F + NGYFVFG CA+EGF T+ G V WSL LA ERYIVICKP
Sbjct: 276 DLCMACFGFTVTFYTAWNGYFVFGPIGCAVEGFFATLGGQVALWSLVVLAIERYIVICKP 455
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GNFRFS+ HAL + TW + I + PP FGWSR+IPEG+QCSCGPD+YT + +ES
Sbjct: 456 MGNFRFSASHALMGIAFTWVMAISCAAPPLFGWSRYIPEGMQCSCGPDYYTHNPDFHNES 635
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F+ FI+P+ +I FSY +L+ ++ AAQQQESATTQKA F
Sbjct: 636 YVLYMFVIHFIIPVVIIFFSYGRLVCKVREAAAQQQESATTQKAEKEVTRMVILMVLGFM 815
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
+ + PYA A ++ N+ L+ +P+FFSKS+ +YNPIIY MNKQF+ C++ +
Sbjct: 816 LAWTPYAVVAFWIFTNKGADFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTIC 995
Query: 319 CGK---AMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK + S T S KTEVS+VSS+QV P
Sbjct: 996 CGKNPFGDEETSSTVSQSKTEVSSVSSSQVSP 1091
>gb|M63632.1|LARRHODA Lamprey rhodopsin mRNA, complete cds
Length = 1628
Score = 319 bits (817), Expect = 3e-85
Identities = 155/346 (44%), Positives = 220/346 (62%), Gaps = 5/346 (1%)
Frame = +1
Query: 7 EEFYL-FKNISSVG--PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
+ FY+ F N + + P++ PQY++A W + AA+M + L+GFP+N + L T+++K
Sbjct: 106 DNFYVPFSNKTGLARSPYEYPQYYLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHK 285
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLNYIL+N++ + +F S NGYFVFG +C++EGF T+ G V W
Sbjct: 286 KLRTPLNYILLNLAMANLFMVLFGFTVTMYTSMNGYFVFGPTMCSIEGFFATLGGEVALW 465
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SL LA ERYIVICKP GNFRF + HA+ V TW + + + PP GWSR+IPEG+QCS
Sbjct: 466 SLVVLAIERYIVICKPMGNFRFGNTHAIMGVAFTWIMALACAAPPLVGWSRYIPEGMQCS 645
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD+YT+ + +ESY ++F+ F+VP +I F Y +LL +K AA QQESA+TQKA
Sbjct: 646 CGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESASTQKA 825
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
F VC+VPYA+ A Y+ ++ +T+P+FF+KS+ +YNP+IY
Sbjct: 826 EKEVTRMVVLMVIGFLVCWVPYASVAFYIFTHQGSDFGATFMTLPAFFAKSSALYNPVIY 1005
Query: 304 CFMNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVSSTQVGP 347
MNKQF+ C I + CGK + D+ S+ KTEVS+VS++ V P
Sbjct: 1006ILMNKQFRNCMITTLCCGKNPLGDDESGASTSKTEVSSVSTSPVSP 1143
>gb|AF109372.1|AF109372 Danio rerio blue-sensitive opsin (bluops) mRNA, complete cds
Length = 1424
Score = 318 bits (816), Expect = 3e-85
Identities = 154/328 (46%), Positives = 207/328 (62%)
Frame = +2
Query: 14 NISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL 73
NIS+ P+ PQ H+ F +AFM +F+ G +N + +V T++YKKLR LNYIL
Sbjct: 197 NISAYSPFLVPQDHLGHSGVFMGMSAFMLFLFIAGTAINVLTIVCTIQYKKLRSHLNYIL 376
Query: 74 VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
VN++ + +F F A YFVFG C +EGF T+ G+V+ WSLA +A ER+
Sbjct: 377 VNLAISNLWVSVFGSSVAFYAFYKKYFVFGPIGCKIEGFTSTIGGMVSLWSLAVVALERW 556
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
+VICKP GNF F + HA+ + W + + +PP GWSR+IPEGLQCSCGPDWYT
Sbjct: 557 LVICKPLGNFTFKTPHAIAGCILPWCMALAAGLPPLLGWSRYIPEGLQCSCGPDWYTTNN 736
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXX 253
K+ +ESY FLF FCF VP S I F Y QLL LK A Q +SA+TQKA
Sbjct: 737 KFNNESYVMFLFCFCFAVPFSTIVFCYGQLLITLKLAAKAQADSASTQKAEREVTKMVVV 916
Query: 254 XXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC 313
F +C+ PYA FA+++V+NR DLRL TIPS K++ +YNP+IY MNKQF++C
Sbjct: 917 MVFGFLICWGPYAIFAIWVVSNRGAPFDLRLATIPSCLCKASTVYNPVIYVLMNKQFRSC 1096
Query: 314 IMKMVCGKAMTDESDTCSSQKTEVSTVS 341
+MKMV K + ++ + SSQ T+VS+V+
Sbjct: 1097MMKMVFNKNIEEDEASSSSQVTQVSSVA 1180
>gb|M92038.1|CHKGSCOB Gallus gallus green sensitive cone opsin mRNA, complete cds
Length = 2436
Score = 317 bits (811), Expect = 1e-84
Identities = 153/332 (46%), Positives = 209/332 (62%), Gaps = 4/332 (1%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + L ++ + G P+N + L+ T ++KKLRQPLNYILVN++
Sbjct: 183 PFEYPQYYLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVA 362
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ F F + NGYFVFG CA+EGF T+ G V WSL LA ERYIV+CKP
Sbjct: 363 DLFMACFGFTVTFYTAWNGYFVFGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKP 542
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GNFRFS+ HA+ + TW + + PP FGWSR++PEG+QCSCGPD+YT Y +ES
Sbjct: 543 MGNFRFSATHAMMGIAFTWVMAFSCAAPPLFGWSRYMPEGMQCSCGPDYYTHNPDYHNES 722
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F+ FI+P+ +I FSY +L+ ++ AAQQQESATTQKA F
Sbjct: 723 YVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESATTQKAEKEVTRMVILMVLGFM 902
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
+ + PYA A ++ N+ L+ +P+FFSKS+ +YNPIIY MNKQF+ C++ +
Sbjct: 903 LAWTPYAVVAFWIFTNKGADFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTIC 1082
Query: 319 CGK---AMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK D S T S KTEVS+VSS+QV P
Sbjct: 1083CGKNPFGDEDVSSTVSQSKTEVSSVSSSQVSP 1178
>gb|U36574.1|ATU36574 Ambystoma tigrinum rhodopsin mRNA, complete cds
Length = 1225
Score = 317 bits (811), Expect = 1e-84
Identities = 156/346 (45%), Positives = 228/346 (65%), Gaps = 7/346 (2%)
Frame = +2
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N S V P++ PQY++A W + + AA+M + L+GFP+N + L T+++KKL
Sbjct: 113 FYVPFSNKSGVVRSPFEYPQYYLAEPWQYSVLAAYMFLLILLGFPVNFLTLYVTIQHKKL 292
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFV-ASCNGYFVFGRHVCALEGFLGTVAGLVTGWS 124
R PLNYIL+N++F + +F FPV + +S +GYFVFG+ C +EGF T+ G + WS
Sbjct: 293 RTPLNYILLNLAFANHFM-VFGGFPVTMYSSMHGYFVFGQTGCYIEGFFATMGGEIALWS 469
Query: 125 LAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSC 184
L LA ERY+V+CKP NFRF HA+ V+ TW + + + PP FGWSR+IPEG+QCSC
Sbjct: 470 LVVLAIERYVVVCKPMSNFRFGENHAIMGVMMTWIMALACAAPPLFGWSRYIPEGMQCSC 649
Query: 185 GPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAX 244
G D+YT+ + +ES+ ++F+ F +PL +I F Y +L+ +K AAQQQESATTQKA
Sbjct: 650 GVDYYTLKPEVNNESFVIYMFLVHFTIPLMIIFFCYGRLVCTVKEAAAQQQESATTQKAE 829
Query: 245 XXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYC 304
F +C+VPYA+ A Y+ +N+ +T+P+FF+KS+ IYNP+IY
Sbjct: 830 KEVTRMVIIMVVAFLICWVPYASVAFYIFSNQGTDFGPIFMTVPAFFAKSSAIYNPVIYI 1009
Query: 305 FMNKQFQACIMKMV-CGKAM--TDESDTCSSQKTEVSTVSSTQVGP 347
+NKQF+ C++ + CGK DE+ + ++ KTE S+VSS+QV P
Sbjct: 1010VLNKQFRNCMITTICCGKNPFGDDETTSAATSKTEASSVSSSQVSP 1147
>gb|M88178.1|CHKPRA1A Chicken visual pigment (PRA1) gene, complete cds
Length = 1350
Score = 317 bits (811), Expect = 1e-84
Identities = 153/332 (46%), Positives = 209/332 (62%), Gaps = 4/332 (1%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + L ++ + G P+N + L+ T ++KKLRQPLNYILVN++
Sbjct: 265 PFEYPQYYLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVA 444
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ F F + NGYFVFG CA+EGF T+ G V WSL LA ERYIV+CKP
Sbjct: 445 DLFMACFGFTVTFYTAWNGYFVFGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKP 624
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GNFRFS+ HA+ + TW + + PP FGWSR++PEG+QCSCGPD+YT Y +ES
Sbjct: 625 MGNFRFSATHAMMGIAFTWVMAFSCAAPPLFGWSRYMPEGMQCSCGPDYYTHNPDYHNES 804
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F+ FI+P+ +I FSY +L+ ++ AAQQQESATTQKA F
Sbjct: 805 YVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESATTQKAEKEVTRMVILMVLGFM 984
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
+ + PYA A ++ N+ L+ +P+FFSKS+ +YNPIIY MNKQF+ C++ +
Sbjct: 985 LAWTPYAVVAFWIFTNKGADFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTIC 1164
Query: 319 CGK---AMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK D S T S KTEVS+VSS+QV P
Sbjct: 1165CGKNPFGDEDVSSTVSQSKTEVSSVSSSQVSP 1260
>dbj|AB043890.1|AB043890 Cynops pyrrhogaster cp-Rh mRNA for visual pigment, complete cds
Length = 1555
Score = 315 bits (808), Expect = 3e-84
Identities = 157/346 (45%), Positives = 226/346 (64%), Gaps = 7/346 (2%)
Frame = +2
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F AA+M + L+GFP+N + L T+++KKL
Sbjct: 68 FYVPFSNKTGVVRNPFEYPQYYLAEPWKFSALAAYMFLLILLGFPVNFLTLYVTIQHKKL 247
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFV-ASCNGYFVFGRHVCALEGFLGTVAGLVTGWS 124
R PLNYIL+N++F + +F FPV + +S NGYFVFG C +EGF T+ G + WS
Sbjct: 248 RTPLNYILLNLAFANHFM-VFGGFPVTMYSSMNGYFVFGVTGCNIEGFFATLGGEIGLWS 424
Query: 125 LAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSC 184
L LA ERY+V+CKP NFRF HA+ V+ TW + + + PP FGWSR+IPEG+QCSC
Sbjct: 425 LVVLAIERYVVVCKPMSNFRFGENHAIMGVMFTWIMALACAAPPLFGWSRYIPEGMQCSC 604
Query: 185 GPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAX 244
G D+YT+ + +ES+ ++F+ F++P+S+I F Y +L+ +K AAQQQESATTQKA
Sbjct: 605 GVDYYTLKPEVNNESFVIYMFVVHFLIPISIISFCYGRLVCTVKEAAAQQQESATTQKAE 784
Query: 245 XXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYC 304
F +C+VPYA+ A Y+ N+ +T+P+FF+KS+ IYNP+IY
Sbjct: 785 REVTRMVIIMVVAFLICWVPYASVAFYIFCNQGSDFGPVFMTVPAFFAKSSSIYNPVIYI 964
Query: 305 FMNKQFQAC-IMKMVCGKAM--TDESDTCSSQKTEVSTVSSTQVGP 347
+N+QF+ C I + CGK DE+ + ++ KTE S+VSS+QV P
Sbjct: 965 VLNRQFRNCMITTLCCGKNPFGEDETTSAATSKTEASSVSSSQVSP 1102
>gb|M92035.1|GECP467A Gekko gekko blue sensitive visual pigment (P467) mRNA, complete cds
Length = 1667
Score = 315 bits (807), Expect = 4e-84
Identities = 159/332 (47%), Positives = 211/332 (62%), Gaps = 4/332 (1%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F + + +M + G PLN + L T ++KKLRQPLNYILVN++
Sbjct: 204 PFEYPQYYLADPWKFKVLSFYMFFLIAAGMPLNGLTLFVTFQHKKLRQPLNYILVNLAAA 383
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ F AS YFVFG CA+EGF T+ G V WSL LA ERYIVICKP
Sbjct: 384 NLVTVCCGFTVTFYASWYAYFVFGPIGCAIEGFFATIGGQVALWSLVVLAIERYIVICKP 563
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GNFRFS+ HA+ + TW + + + PP FGWSRFIPEG+QCSCGPD+YT+ + +ES
Sbjct: 564 MGNFRFSATHAIMGIAFTWFMALACAGPPLFGWSRFIPEGMQCSCGPDYYTLNPDFHNES 743
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++FI F VP+ +I FSY +L+ ++ AAQQQESATTQKA F
Sbjct: 744 YVIYMFIVHFTVPMVVIFFSYGRLVCKVREAAAQQQESATTQKAEKEVTRMVILMVLGFL 923
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
+ + PYAA A+++ NR + +TIP+FFSKS+ IYNPIIY +NKQF+ C++ +
Sbjct: 924 LAWTPYAATAIWIFTNRGAAFSVTFMTIPAFFSKSSSIYNPIIYVLLNKQFRNCMVTTIC 1103
Query: 319 CGK---AMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK D S + S KTEVS+VSS+QV P
Sbjct: 1104CGKNPFGDEDVSSSVSQSKTEVSSVSSSQVAP 1199
>gb|L11865.1|CRAGRN Carassius auratus green cone opsin mRNA, complete cds
Length = 1151
Score = 313 bits (803), Expect = 1e-83
Identities = 148/325 (45%), Positives = 213/325 (65%), Gaps = 3/325 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F + A ++ + +G P+N + LV T ++KKLRQPLN+ILVN++
Sbjct: 112 PFEYPQYYLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVA 291
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
G ++ F F + NGYFV G CA+EGF+ T+ G V WSL LA ERYIV+CKP
Sbjct: 292 GTIMVCFGFTVTFYTAINGYFVLGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKP 471
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
G+F+FSS HA + TW + + + PP FGWSR+IPEG+QCSCGPD+YT+ Y +ES
Sbjct: 472 MGSFKFSSSHAFAGIAFTWVMALACAAPPLFGWSRYIPEGMQCSCGPDYYTLNPDYNNES 651
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F+ FI+P+++I F+Y +L+ +KA AAQQQ+SA+TQKA F
Sbjct: 652 YVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSASTQKAEREVTKMVILMVFGFL 831
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
+ + PYA A ++ N+ + + IP+FFSKS+ +YNP+IY +NKQF+ C++ +
Sbjct: 832 IAWTPYATVAAWIFFNKGADFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIF 1011
Query: 319 CGK--AMTDESDTCSSQKTEVSTVS 341
CGK DES T S+ KTEVS+VS
Sbjct: 1012CGKNPLGDDESSTVSTSKTEVSSVS 1086
>emb|Y17586.1|GME17586 Galeus melastomus mRNA for opsin
Length = 1065
Score = 311 bits (796), Expect = 7e-83
Identities = 156/347 (44%), Positives = 219/347 (62%), Gaps = 6/347 (1%)
Frame = +1
Query: 7 EEFYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
E FY+ N + V P++ PQY++A W F + AA+M + + GFP+N + L T++ K
Sbjct: 19 ENFYVPMSNKTGVVRNPFEYPQYYLADHWMFAVLAAYMFFLIITGFPVNFLTLFVTIQNK 198
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLRQPLNYIL+N++ + + S NGYFVFG C LEGF T+ G ++ W
Sbjct: 199 KLRQPLNYILLNLAVANLFMVFGGFTTTLITSMNGYFVFGSTGCNLEGFFATLGGEISLW 378
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SL LA ERY+V+CKP NFRF S+HA+ V TW + + + PP GWSR+IPEGLQCS
Sbjct: 379 SLVVLAIERYVVVCKPMSNFRFGSQHAIAGVSLTWVMAMACAAPPLVGWSRYIPEGLQCS 558
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CG D+YT + + S+ ++F+ F +PL++I F Y +L+ +KA AAQQQES TTQ+A
Sbjct: 559 CGIDYYTPKPEINNVSFVIYMFVVHFSIPLTIIFFCYGRLVCTVKAAAAQQQESETTQRA 738
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
F +C++PYA+ A+Y+ NN+ +TIPSFF+KS+ +YNP+IY
Sbjct: 739 EREVTRMVVIMVIGFLICWLPYASVALYIFNNQGSEFGPVFMTIPSFFAKSSALYNPLIY 918
Query: 304 CFMNKQFQAC-IMKMVCGK--AMTDESDTCSSQKTEVSTVSSTQVGP 347
MNKQF+ C I + CGK +ES + S+ KTE S+VSS+QV P
Sbjct: 919 ILMNKQFRNCMITTLCCGKNPFEEEESTSASASKTEASSVSSSQVSP 1059
>gb|L11866.1|CRAGRNA Carassius auratus green cone opsin mRNA, complete cds
Length = 1364
Score = 311 bits (796), Expect = 7e-83
Identities = 147/325 (45%), Positives = 213/325 (65%), Gaps = 3/325 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F L A +M + +G P+N + L+ T ++KKLRQPLN+ILVN++
Sbjct: 74 PFEYPQYYLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVA 253
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
G ++ F F + NGYF G CA+EGF+ T+ G V WSL LA ERYIV+CKP
Sbjct: 254 GAIMVCFGFTVTFYTAINGYFALGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKP 433
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
G+F+FSS HA + TW + + + PP GWSR+IPEG+QCSCGPD+YT+ +Y +ES
Sbjct: 434 MGSFKFSSTHASAGIAFTWVMAMACAAPPLVGWSRYIPEGIQCSCGPDYYTLNPEYNNES 613
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++FI FI+P+++I F+Y +L+ +KA AAQQQ+SA+TQKA F
Sbjct: 614 YVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSASTQKAEREVTKMVILMVLGFL 793
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMV 318
V + PYA A ++ N+ + + IP+FFSK++ +YNP+IY +NKQF++C++ +
Sbjct: 794 VAWTPYATVAAWIFFNKGAAFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLF 973
Query: 319 CGK--AMTDESDTCSSQKTEVSTVS 341
CGK +ES T S+ KTEVS+VS
Sbjct: 974 CGKNPLGDEESSTVSTSKTEVSSVS 1048
>emb|AJ277923.1|SCA277923 Serinus canaria partial mRNA for SW-sensitive opsin (ops2 gene)
Length = 1002
Score = 311 bits (796), Expect = 7e-83
Identities = 156/329 (47%), Positives = 214/329 (64%), Gaps = 4/329 (1%)
Frame = +1
Query: 14 NISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL 73
N++++ P+ PQ H+ F AAFM + ++G P+NA+ +V T +Y+KLR LNYIL
Sbjct: 16 NVTALSPFLVPQTHLGSPGIFKAMAAFMFLLVVLGVPINALTVVCTAKYRKLRSHLNYIL 195
Query: 74 VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
VN++ L+ F + YF GR C +EGF T+ G+V+ WSLA +AFER+
Sbjct: 196 VNLAVANLLVVCVGSTTAFYSFSQMYFALGRLACKIEGFTATLGGMVSLWSLAVVAFERF 375
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
+VICKP GNF F HA+ TW G+ S+PP FGWSR+IPEGLQCSC PDWYT
Sbjct: 376 LVICKPLGNFTFRGSHAVLGCAITWIFGLIASVPPLFGWSRYIPEGLQCSCRPDWYTTDN 555
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA-XXXXXXXXX 252
K+ +ES F FCF PLS+I FSY +LL L+AVA+QQ++SATTQKA
Sbjct: 556 KWNNESSLIFSSCFCFGFPLSVIVFSYGRLLLTLRAVASQQEQSATTQKAEXEVTKMVVV 735
Query: 253 XXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQA 312
VC++PY +FA+++V +R H DL L +IPS FSK++ +YNPIIY FMNKQF++
Sbjct: 736 MVLGLILVCWLPYCSFALWVVTHRGHPFDLGLASIPSVFSKASTVYNPIIYVFMNKQFRS 915
Query: 313 CIMKMV-CGKAMTDESD--TCSSQKTEVS 338
C++K+V CG++ + D + SSQ T+VS
Sbjct: 916 CMLKLVFCGRSPFGDDDDVSGSSQATQVS 1002
>gb|AF222329.1|AF222329 Taeniopygia guttata rhodopsin mRNA, complete cds
Length = 1100
Score = 310 bits (795), Expect = 9e-83
Identities = 154/345 (44%), Positives = 216/345 (61%), Gaps = 4/345 (1%)
Frame = +3
Query: 7 EEFYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++FY+ N + V P++ PQY++A W F AA+M + L+GFP+N + L T+++K
Sbjct: 48 QDFYVPMSNKTGVVRSPFEYPQYYLAEPWKFSALAAYMFMLILLGFPINFLTLYVTIQHK 227
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLNYIL+N++ + S NGYFVFG C +EGF T+ G + W
Sbjct: 228 KLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMNGYFVFGVTGCYIEGFFATLGGEIALW 407
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SL LA ERY+V+CKP NFRF HA+ V +W + + + PP FGWSR+IPEG+QCS
Sbjct: 408 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFSWIMALACAAPPLFGWSRYIPEGMQCS 587
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CG D+YT+ + +ES+ ++F+ F++PLS+I F Y L+ +K AAQQQESATTQKA
Sbjct: 588 CGIDYYTLKPEVNNESFVIYMFVVHFMIPLSIIFFCYGNLVCTVKEAAAQQQESATTQKA 767
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
F +C+VPYA+ A Y+ N+ +TIP+FF+KS+ IYNP+IY
Sbjct: 768 EKEVTRMVIIMVIAFLICWVPYASVAFYIFTNQGSDFGPIFMTIPAFFAKSSAIYNPVIY 947
Query: 304 CFMNKQFQAC-IMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
MNKQF+ C I + CGK + DT S+ KTE S+VS++QV P
Sbjct: 948 IVMNKQFRNCMITTLCCGKNPLGDEDT-SAGKTETSSVSTSQVSP 1079
>emb|Y18679.1|PMIY18679 Pomatoschistus minutus mRNA for putative green sensitive cone
opsin, partial
Length = 1389
Score = 310 bits (793), Expect = 2e-82
Identities = 145/326 (44%), Positives = 208/326 (63%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ W + L A +M + G P+NA+ L+ T + KKLRQPLN+ILVN++
Sbjct: 64 PYEYPQYYMVDPWIYKLLAFYMFFLICTGTPINALTLLVTFQNKKLRQPLNFILVNLAVA 243
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
G ++C F ++ NGYF+ G CA+EGF+ T+ G V WSL LA ERYIV+CKP
Sbjct: 244 GLIMCAFGFTITITSALNGYFILGATFCAIEGFMATLGGEVALWSLVVLAVERYIVVCKP 423
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
G+F+FS HA V TW + + + PP FGWSR++PEG+QCSCGPD+YT+ + +ES
Sbjct: 424 MGSFKFSGAHAGAGVALTWIMAMACAAPPLFGWSRYLPEGMQCSCGPDYYTLAPGFNNES 603
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F+ F +P+ LI F+Y L+ +KA AAQQQ+SA+TQKA F
Sbjct: 604 YVMYMFVVHFFIPVFLIFFTYGSLVLTVKAAAAQQQDSASTQKAEKEVTRMCFLMVMGFL 783
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC 319
V +VPYA+FA ++ N+ IP+FF+KS+ +YNP+IY MNKQF+ C++ V
Sbjct: 784 VAWVPYASFAGWIFLNKGAAFTAMTAAIPAFFAKSSALYNPVIYVLMNKQFRNCMLSAVG 963
Query: 320 GKAMTDESDTCSSQKTEVSTVSSTQV 345
M D+ + S+ KTEVS+VS T +
Sbjct: 964 MGGMVDDETSVSASKTEVSSVS*TSL 1041
>gb|AF109370.1|AF109370 Danio rerio green-sensitive opsin 2 (grops2) mRNA, complete cds
Length = 1398
Score = 310 bits (793), Expect = 2e-82
Identities = 146/325 (44%), Positives = 211/325 (64%), Gaps = 3/325 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F L A +M + +GFP+N + L+ T ++KKLRQPLN+ILVN++
Sbjct: 145 PYEYPQYYLAEPWQFKLLAVYMFFLICLGFPINGLTLLVTAQHKKLRQPLNFILVNLAVA 324
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
G ++ F F + NGYFV G CA+EGF+ T+ G V WSL LA ERYIV+CKP
Sbjct: 325 GTIMVCFGFTVTFYTAINGYFVLGPTGCAIEGFMATLGGEVALWSLVVLAVERYIVVCKP 504
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
G+F+FS+ HA TW + + + PP GW R+IPEG+QCSCGPD+YT+ +Y +ES
Sbjct: 505 MGSFKFSASHAFAGCAFTWVMAMACAAPPLVGWPRYIPEGMQCSCGPDYYTLNPEYNNES 684
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++FI FI+P+++I F+Y +L+ +KA AAQQQES +TQKA F
Sbjct: 685 YVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFL 864
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMV 318
+ + PYA A ++ N+ + + +P+FFSK++ +YNP+IY +NKQF+ C++ +
Sbjct: 865 IAWTPYATVAAWIFFNKGAAFSAQFMAVPAFFSKTSALYNPVIYVLLNKQFRNCMLTTLF 1044
Query: 319 CGK--AMTDESDTCSSQKTEVSTVS 341
CGK DES T S+ KTEVS+VS
Sbjct: 1045CGKNPLGDDESSTVSTSKTEVSSVS 1119
>gb|U59922.1|BMU59922 Bufo marinus rhodopsin mRNA, complete cds
Length = 1584
Score = 310 bits (793), Expect = 2e-82
Identities = 148/331 (44%), Positives = 212/331 (63%), Gaps = 3/331 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + + A+M + L+GFP+N M L T+++KKLR PLNYIL+N++F
Sbjct: 98 PFEYPQYYLAEPWQYSVLCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFA 277
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + +S NGYFVFG+ C +EGF T+ G + WSL LA ERY+V+CKP
Sbjct: 278 NHFMVLCGFTVTMYSSMNGYFVFGQTGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKP 457
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRFS HA+ V TW + + + PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 458 MSNFRFSENHAIMGVAFTWIMALACAAPPLFGWSRYIPEGMQCSCGVDYYTLKPEVNNES 637
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F++PL +I F Y +L+ +K AAQQQESATTQKA F
Sbjct: 638 FVIYMFVVHFLIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFL 817
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA+ A ++ ++ +TIP+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 818 ICWVPYASVAFFIFTHQGSEFGPVFMTIPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLC 997
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK + D S + KTE S+VSS+QV P
Sbjct: 998 CGKNPFGDEDASSAATSKTEASSVSSSQVSP 1090
>gb|AF021241.1|AF021241 Melopsittacus undulatus green cone opsin mRNA, partial cds
Length = 1065
Score = 309 bits (792), Expect = 2e-82
Identities = 148/332 (44%), Positives = 208/332 (62%), Gaps = 4/332 (1%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + + ++ + G P+N + L+ T ++KKLRQPLNYILVN++
Sbjct: 67 PFEYPQYYLAEPWKYRVVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ F F + NGYFVFG CA+EGF T+ G V WSL LA ERYIV+CKP
Sbjct: 247 DLFMACFGFTVTFYTAWNGYFVFGPIGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GN RFS+ HA+ + TW + + PP FGWSR++PEG+QCSCGPD+YT Y +ES
Sbjct: 427 MGNLRFSATHAMMGIAFTWIMAFSCAAPPLFGWSRYMPEGMQCSCGPDYYTHNPDYHNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++FI FI+P+ +I FSY +L ++ AAQQQESATTQKA F
Sbjct: 607 YVLYMFITHFIIPVVVIFFSYGRLFCKVREAAAQQQESATTQKAEKEVTRMVILMVLGFM 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
+ + PYA ++ N+ L+++P+FFSKS+ +YNP+IY MNKQF+ C++ +
Sbjct: 787 LAWTPYAVVGFWIFTNKGADFSATLMSVPAFFSKSSSLYNPVIYVLMNKQFRNCMITTIC 966
Query: 319 CGKAMTDESDTCSS---QKTEVSTVSSTQVGP 347
CGK + DT S+ KTEVS++SS+QV P
Sbjct: 967 CGKNPFGDEDTSSAVSQSKTEVSSISSSQVSP 1062
>gb|U23802.1|AMU23802 Alligator mississippiensis rhodopsin mRNA, complete cds
Length = 1406
Score = 309 bits (792), Expect = 2e-82
Identities = 151/344 (43%), Positives = 215/344 (61%), Gaps = 4/344 (1%)
Frame = +3
Query: 8 EFYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKK 64
+FY+ F N + V P++ PQY++A W + AA+M + ++GFP+N + L T+++KK
Sbjct: 138 DFYIPFSNKTGVVRSPFEYPQYYLAEPWKYSALAAYMFMLIILGFPINFLTLYVTVQHKK 317
Query: 65 LRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWS 124
LR PLNYIL+N++ + + S NGYFVFG C EGF T+ G V W
Sbjct: 318 LRSPLNYILLNLAVADLFMVLGGFTTTLYTSMNGYFVFGVTGCYFEGFFATLGGEVALWC 497
Query: 125 LAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSC 184
L LA ERYIV+CKP NFRF HA+ V+ TW + + + PP GWSR+IPEG+QCSC
Sbjct: 498 LVVLAIERYIVVCKPMSNFRFGENHAIMGVVFTWIMALTCAAPPLVGWSRYIPEGMQCSC 677
Query: 185 GPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAX 244
G D+YT+ + +ES+ ++F+ F +PL++I F Y +L+ +K AAQQQESATTQKA
Sbjct: 678 GVDYYTLKPEVNNESFVIYMFVVHFAIPLAVIFFCYGRLVCTVKEAAAQQQESATTQKAE 857
Query: 245 XXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYC 304
F +C+VPYA+ A Y+ +N+ +TIP+FF+KS+ IYNP+IY
Sbjct: 858 KEVTRMVIIMVVSFLICWVPYASVAFYIFSNQGSDFGPVFMTIPAFFAKSSAIYNPVIYI 1037
Query: 305 FMNKQFQAC-IMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
MNKQF+ C I + CGK + +T + KTE S+VS++QV P
Sbjct: 1038VMNKQFRNCMITTLCCGKNPLGDDETATGSKTETSSVSTSQVSP 1169
>gb|U59920.1|RTU59920 Rana temporaria rhodopsin mRNA, complete cds
Length = 1399
Score = 309 bits (791), Expect = 3e-82
Identities = 146/331 (44%), Positives = 212/331 (63%), Gaps = 3/331 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + + AA+M + L+GFP+N M L T+++KKLR PLNYIL+N++F
Sbjct: 84 PFEYPQYYLAEPWKYSILAAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFA 263
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + S +GYFVFG+ C EGF T+ G + WSL LA ERYIV+CKP
Sbjct: 264 NHFMVLCGFTITLYTSLHGYFVFGQSGCYFEGFFATLGGEIALWSLVALAIERYIVVCKP 443
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + ++PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 444 MSNFRFGENHAMMGVAFTWIMALACAVPPLFGWSRYIPEGMQCSCGVDYYTLKPEINNES 623
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F++PL +I F Y +L+ +K AAQQQESATTQKA F
Sbjct: 624 FVIYMFVVHFLIPLIIITFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVIFFL 803
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA A Y+ N+ +T+P+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 804 ICWVPYAYVAFYIFCNQGSEFGPIFMTVPAFFAKSSAIYNPVIYIMLNKQFRNCMITTLC 983
Query: 319 CGKAM--TDESDTCSSQKTEVSTVSSTQVGP 347
CGK D++ + ++ KTE ++VS++QV P
Sbjct: 984 CGKNPFGDDDASSAATSKTEATSVSTSQVSP 1076
>gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds
Length = 1574
Score = 307 bits (787), Expect = 8e-82
Identities = 146/331 (44%), Positives = 210/331 (63%), Gaps = 3/331 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + + A+M + L+GFP+N M L T+++KKLR PLNYIL+N++F
Sbjct: 108 PFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFA 287
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + +S NGYF+ G C +EGF T+ G + WSL LA ERY+V+CKP
Sbjct: 288 NHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKP 467
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRFS HA+ V TW + + ++PP GWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 468 MSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNES 647
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F +PL +I F Y +L+ +K AAQQQESATTQKA F
Sbjct: 648 FVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFL 827
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA+ A ++ +N+ +T+P+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 828 ICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLC 1007
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK E D S + KTE S+VSS+QV P
Sbjct: 1008CGKNPFGEDDASSAATSKTEASSVSSSQVSP 1100
>gb|AF109369.1|AF109369 Danio rerio green-sensitive opsin 1 (grops1) mRNA, complete cds
Length = 1399
Score = 307 bits (787), Expect = 8e-82
Identities = 146/325 (44%), Positives = 209/325 (63%), Gaps = 3/325 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D QY++A W F A +M + + GFP+N + LV T ++KKLRQPLNYILVN++F
Sbjct: 147 PYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFA 326
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
G ++ IF F S GY G C +EGF T+ G V WSL LA ERYIV+CKP
Sbjct: 327 GTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKP 506
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
G+F+FS+ HA+ + TW + ++PP FGWSR++PEG+Q SCGPD+YT+ +Y +ES
Sbjct: 507 MGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNES 686
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F F +P++ I F+Y L+ +KA AAQQQES +TQKA F
Sbjct: 687 YVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFL 866
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMK-MV 318
+VPYA+FA ++ NR + + +P+FFSK++ ++NPIIY +NKQF++C++ +
Sbjct: 867 FAWVPYASFAAWIFFNRGAAFSAQAIAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLF 1046
Query: 319 CGKAM--TDESDTCSSQKTEVSTVS 341
CGK+ DES + S+ KTEVS+VS
Sbjct: 1047CGKSPLGDDESSSVSTSKTEVSSVS 1121
>gb|AF309568.1|AF309568 Spalax ehrenbergi rod visual pigment rhodopsin mRNA, complete cds
Length = 1300
Score = 306 bits (785), Expect = 1e-81
Identities = 150/338 (44%), Positives = 215/338 (63%), Gaps = 5/338 (1%)
Frame = +3
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 126 FYVPFSNGTGVVRSPFEQPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 305
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + I F S +GYFVFG C LEGF T+ G + WSL
Sbjct: 306 RTPLNYILLNLALADLFMVIGGFTTTFYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 485
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+T V TW + + ++PP GWSR+IPEG+QCSCG
Sbjct: 486 VVLAIERYVVVCKPMSNFRFGENHAITGVAFTWVMALACAVPPLVGWSRYIPEGMQCSCG 665
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 666 IDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEK 845
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ AMY+ ++ +T+P+FF+KSA IYNP+IY
Sbjct: 846 EVTRMVIIMVIAFLICWVPYASVAMYIFTHQGSNFGPIFMTLPAFFAKSASIYNPVIYIM 1025
Query: 306 MNKQFQACIM-KMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ + CGK + DE + ++ KTE S V+
Sbjct: 1026MNKQFRNCMLTTLCCGKNLLGDEEASPTASKTETSQVA 1139
>emb|Y17585.1|SCA85 Scyliorhinus canicula mRNA for opsin
Length = 1090
Score = 306 bits (783), Expect = 2e-81
Identities = 156/348 (44%), Positives = 221/348 (62%), Gaps = 7/348 (2%)
Frame = +1
Query: 7 EEFYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
E FY+ N + V P+D PQY++A W F + AA+M + + GFP+N + L T+++K
Sbjct: 19 ENFYIPMSNKTGVVRSPFDYPQYYLAEPWKFSVLAAYMFFLIIAGFPVNFLTLYVTIQHK 198
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFP-VFVASCNGYFVFGRHVCALEGFLGTVAGLVTG 122
KLRQPLNYIL+N++ L IF FP + S NGYFVFG C EGF T+ G +
Sbjct: 199 KLRQPLNYILLNLAVAD-LFMIFGGFPSTMITSMNGYFVFGPSGCNFEGFFATLGGEIGL 375
Query: 123 WSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQC 182
WSL LA ERY+V+CKP NFRF S+HA V TW + + + PP GWSR+IPEG+QC
Sbjct: 376 WSLVVLAIERYVVVCKPMSNFRFGSQHAFMGVGLTWIMAMACAFPPLVGWSRYIPEGMQC 555
Query: 183 SCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQK 242
SCG D+YT+ + +ES+ ++F+ F +PL++I F Y +L+ +K AAQQQES TTQ+
Sbjct: 556 SCGIDYYTLKPEVNNESFVIYMFVVHFSIPLTIIFFCYGRLVCTVKEAAAQQQESETTQR 735
Query: 243 AXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPII 302
A F +C++PYA+ A ++ N+ +TIP+FF+K+A +YNP+I
Sbjct: 736 AEREVTRMVIIMVIAFLICWLPYASVAFFIFCNQGSEFGPIFMTIPAFFAKAASLYNPLI 915
Query: 303 YCFMNKQFQACIMKMV-CGK--AMTDESDTCSSQKTEVSTVSSTQVGP 347
Y MNKQF+ C++ + CGK +ES + S+ KTE S+VSS+QV P
Sbjct: 916 YILMNKQFRNCMITTICCGKNPFEEEESTSASASKTEASSVSSSQVAP 1059
>dbj|AB040148.1|AB040148 Cynops pyrrhogaster mRNA for opsin, complete cds
Length = 1694
Score = 305 bits (782), Expect = 3e-81
Identities = 153/337 (45%), Positives = 210/337 (61%), Gaps = 3/337 (0%)
Frame = +1
Query: 14 NISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL 73
NI+++ P+ PQ H+ F A FM + L+G P+N + ++ T KKLR NYIL
Sbjct: 157 NITALSPFLVPQTHLGSPTIFRSIAVFMFFILLLGIPINFLTILCTFLNKKLRTHFNYIL 336
Query: 74 VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
VN++ L+ F ++ YF G C +EGF T+ G+V W LA +AFERY
Sbjct: 337 VNMAVANLLVIFIGPTLSFYSNSQMYFALGPLACKIEGFAATLGGIVGLWCLAVVAFERY 516
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
+VICKP G F F HA+ + TW G + PP FGWSR+IPEGLQCSCGPDWYTV
Sbjct: 517 LVICKPVGGFTFRESHAIMGCIFTWIAGFTAAGPPLFGWSRYIPEGLQCSCGPDWYTVNN 696
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXX 253
K+ +ESY FLF F F VPL +I FSY +LL L+AVA QQ++SATTQKA
Sbjct: 697 KWNNESYVLFLFCFSFGVPLFIIIFSYGRLLITLRAVAKQQEQSATTQKAEREVTKMVIV 876
Query: 254 XXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC 313
+ +C+ PYA FA++ ++R + + +IP+ FSKS+ +YNP+IY FMN+QF++
Sbjct: 877 MVLGYLICWSPYAIFALWATSHRGEIFEPWMASIPAIFSKSSTVYNPVIYVFMNRQFRSS 1056
Query: 314 IMKMV-CGKAM--TDESDTCSSQKTEVSTVSSTQVGP 347
+MK+V CGK+ D+ + S Q T+VS+VSS+QV P
Sbjct: 1057MMKLVFCGKSPFGDDDDSSASGQSTQVSSVSSSQVAP 1167
>gb|S79840.1|S79840 rhodopsin [Rana catesbeiana=bullfrogs, retina, mRNA, 1712 nt]
Length = 1712
Score = 305 bits (780), Expect = 5e-81
Identities = 145/331 (43%), Positives = 209/331 (62%), Gaps = 3/331 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + + AA+M + L+G P+N M L T+++KKLR PLNYIL+N++F
Sbjct: 147 PFEYPQYYLAEPWKYSVLAAYMFLLILLGLPINFMTLYVTIQHKKLRTPLNYILLNLAFA 326
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + S +GYFVFG+ C EGF T+ G + WSL LA ERYIV+CKP
Sbjct: 327 NHFMVLCGFTITMYTSLHGYFVFGQTGCYFEGFFATLGGEIALWSLVVLAIERYIVVCKP 506
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + ++PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 507 MSNFRFGENHAMMGVAFTWIMALACAVPPLFGWSRYIPEGMQCSCGVDYYTLKPEVNNES 686
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F++PL +I F Y +L+ +K AAQQQESATTQKA F
Sbjct: 687 FVIYMFVVHFLIPLIIISFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVVIMVIFFL 866
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA A Y+ ++ +T+P+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 867 ICWVPYAYVAFYIFTHQGSEFGPIFMTVPAFFAKSSAIYNPVIYIMLNKQFRNCMITTLC 1046
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK + D S + KTE ++VS++QV P
Sbjct: 1047CGKNPFGDEDASSAATSKTEATSVSTSQVSP 1139
>gb|L07770.1|XELRHODOP Xenopus laevis rhodopsin mRNA, complete cds
Length = 1684
Score = 304 bits (779), Expect = 7e-81
Identities = 148/331 (44%), Positives = 207/331 (61%), Gaps = 3/331 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++A W + AA+M + L+G P+N M L T+++KKLR PLNYIL+N+ F
Sbjct: 176 PFDYPQYYLAEPWQYSALAAYMFLLILLGLPINFMTLFVTIQHKKLRTPLNYILLNLVFA 355
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + S +GYF+FG+ C +EGF T+ G V WSL LA ERY+V+CKP
Sbjct: 356 NHFMVLCGFTVTMYTSMHGYFIFGQTGCYIEGFFATLGGEVALWSLVVLAVERYMVVCKP 535
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + + PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 536 MANFRFGENHAIMGVAFTWIMALSCAAPPLFGWSRYIPEGMQCSCGVDYYTLKPEVNNES 715
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL +I F Y +LL +K AAQQQESATTQKA F
Sbjct: 716 FVIYMFIVHFTIPLIVIFFCYGRLLCTVKEAAAQQQESATTQKAEKEVTRMVVIMVVFFL 895
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA A Y+ ++ +T+P+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 896 ICWVPYAYVAFYIFTHQGSNFGPVFMTVPAFFAKSSAIYNPVIYIVLNKQFRNCLITTLC 1075
Query: 319 CGKAMTDESD--TCSSQKTEVSTVSSTQVGP 347
CGK + D + ++ KTE S+VSS+QV P
Sbjct: 1076CGKNPFGDEDGSSAATSKTEASSVSSSQVSP 1168
>gb|AF200433.1|AF200433 Bufo japonicus deep brain photoreceptor protein pinopsin mRNA,
complete cds
Length = 1242
Score = 303 bits (777), Expect = 1e-80
Identities = 154/330 (46%), Positives = 216/330 (64%), Gaps = 3/330 (0%)
Frame = +1
Query: 15 ISSVGPWDGPQY-HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL 73
+ + GP++GPQ+ H+AP + A MG V + F +N MV+V +L+YKKLR PLNYIL
Sbjct: 145 LETPGPFEGPQWPHVAPRSTYLTVAVLMGMVVFLAFFVNGMVIVVSLKYKKLRSPLNYIL 324
Query: 74 VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
VN++ L+ +F F + G+F G+ VC LEGF+ ++ G+V WSLA LAFERY
Sbjct: 325 VNLAVADILVTMFGSTVSFHNNIFGFFTLGKLVCELEGFVVSLTGIVGLWSLAILAFERY 504
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
IVICKP G+FRF +HA+ TW + PP GW ++PEGL SCGP+WYT GT
Sbjct: 505 IVICKPMGDFRFQQRHAVMGCAFTWIWAFLWTSPPLIGWCSYVPEGLGTSCGPNWYTGGT 684
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXX 253
+ SY LF CF++PL+ I FSY+ LL AL+AVAAQQ+ES TTQ+A
Sbjct: 685 --NNNSYILALFTTCFMMPLTTIIFSYSNLLLALRAVAAQQKESETTQRAEREVTRMVIA 858
Query: 254 XXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC 313
F +C++PYA FA+ M +N+N +D L ++PS+FSK+A +YNP+IY FMNKQF+ C
Sbjct: 859 MVLAFLICWLPYAVFAIVMASNKNVVIDPTLASMPSYFSKTATVYNPVIYVFMNKQFRDC 1038
Query: 314 IMKMV-CGKAMTDESDT-CSSQKTEVSTVS 341
+ K++ CG+ E +T +S +T+V++VS
Sbjct: 1039LTKLLCCGRNPFGEDETSTTSGRTDVTSVS 1128
>gb|S49004.1|S49004 rhodopsin [Rana pipiens=common leopard frogs, retina, mRNA, 1730
nt]
Length = 1730
Score = 303 bits (775), Expect = 2e-80
Identities = 144/331 (43%), Positives = 209/331 (62%), Gaps = 3/331 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++A W + + AA+M + L+G P+N M L T+++KKLR PLNYIL+N+
Sbjct: 172 PFDYPQYYLAEPWKYSVLAAYMFLLILLGLPINFMTLYVTIQHKKLRTPLNYILLNLGVC 351
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + S +GYFVFG+ C EGF T+ G + WSL LA ERYIV+CKP
Sbjct: 352 NHFMVLCGFTITMYTSLHGYFVFGQTGCYFEGFFATLGGEIALWSLVVLAIERYIVVCKP 531
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + ++PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 532 MSNFRFGENHAMMGVAFTWIMALACAVPPLFGWSRYIPEGMQCSCGVDYYTLKPEVNNES 711
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F++PL +I F Y +L+ +K AAQQQESATTQKA F
Sbjct: 712 FVIYMFVVHFLIPLIIISFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVIFFL 891
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA A Y+ ++ +T+P+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 892 ICWVPYAYVAFYIFTHQGSEFGPIFMTVPAFFAKSSAIYNPVIYIMLNKQFRNCMITTLC 1071
Query: 319 CGKAM--TDESDTCSSQKTEVSTVSSTQVGP 347
CGK D++ + ++ KTE ++VS++QV P
Sbjct: 1072CGKNPFGDDDASSAATSKTEATSVSTSQVSP 1164
>gb|S62229.1|S62229 Xenopus laevis opsin mRNA, complete cds
Length = 1939
Score = 302 bits (774), Expect = 3e-80
Identities = 148/331 (44%), Positives = 205/331 (61%), Gaps = 3/331 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++A W + AA+M + L+G P+N M L T+++KKLR PLNYIL+N+ F
Sbjct: 397 PFDYPQYYLAEPWQYSALAAYMFLLILLGLPINFMTLFVTIQHKKLRTPLNYILLNLVFA 576
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + S +GYF+FG C +EGF T+ G V WSL LA ERYIV+CKP
Sbjct: 577 NHFMVLCGFTVTMYTSMHGYFIFGPTGCYIEGFFATLGGEVALWSLVVLAVERYIVVCKP 756
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + + PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 757 MANFRFGENHAIMGVAFTWIMALSCAAPPLFGWSRYIPEGMQCSCGVDYYTLKPEVNNES 936
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL +I F Y +LL +K AAQQQES TTQKA F
Sbjct: 937 FVIYMFIVHFTIPLIVIFFCYGRLLCTVKEAAAQQQESLTTQKAEKEVTRMVVIMVVFFL 1116
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA A Y+ ++ +T+P+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 1117ICWVPYAYVAFYIFTHQGSNFGPVFMTVPAFFAKSSAIYNPVIYIVLNKQFRNCLITTLC 1296
Query: 319 CGKAMTDESD--TCSSQKTEVSTVSSTQVGP 347
CGK + D + ++ KTE S+VSS+QV P
Sbjct: 1297CGKNPFGDEDGSSAATSKTEASSVSSSQVSP 1389
>gb|L04692.1|XELOPSIN Frog opsin mRNA, complete cds
Length = 1939
Score = 302 bits (774), Expect = 3e-80
Identities = 148/331 (44%), Positives = 205/331 (61%), Gaps = 3/331 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++A W + AA+M + L+G P+N M L T+++KKLR PLNYIL+N+ F
Sbjct: 397 PFDYPQYYLAEPWQYSALAAYMFLLILLGLPINFMTLFVTIQHKKLRTPLNYILLNLVFA 576
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + S +GYF+FG C +EGF T+ G V WSL LA ERYIV+CKP
Sbjct: 577 NHFMVLCGFTVTMYTSMHGYFIFGPTGCYIEGFFATLGGEVALWSLVVLAVERYIVVCKP 756
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + + PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 757 MANFRFGENHAIMGVAFTWIMALSCAAPPLFGWSRYIPEGMQCSCGVDYYTLKPEVNNES 936
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL +I F Y +LL +K AAQQQES TTQKA F
Sbjct: 937 FVIYMFIVHFTIPLIVIFFCYGRLLCTVKEAAAQQQESLTTQKAEKEVTRMVVIMVVFFL 1116
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA A Y+ ++ +T+P+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 1117ICWVPYAYVAFYIFTHQGSNFGPVFMTVPAFFAKSSAIYNPVIYIVLNKQFRNCLITTLC 1296
Query: 319 CGKAMTDESD--TCSSQKTEVSTVSSTQVGP 347
CGK + D + ++ KTE S+VSS+QV P
Sbjct: 1297CGKNPFGDEDGSSAATSKTEASSVSSSQVSP 1389
>gb|AF021239.1| Anas platyrhynchos green cone opsin mRNA, partial cds
Length = 952
Score = 300 bits (769), Expect = 1e-79
Identities = 142/313 (45%), Positives = 197/313 (62%), Gaps = 1/313 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + L ++ + G P+N + L+ T ++KKLRQPLNYILVN++
Sbjct: 13 PFEYPQYYLAEPWRYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVA 192
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ F F + NGYFVFG CA+EGFL T+ G V WSL LA ERYIV+CKP
Sbjct: 193 DLFMACFGFTVTFYTAWNGYFVFGPVGCAVEGFLATLGGQVALWSLVVLAIERYIVVCKP 372
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GNFRFS+ HA+ + TW + + PP FGWSR++PEG+QCSCGPD+YT Y +ES
Sbjct: 373 MGNFRFSATHAMMGIAFTWIMAFSCAAPPLFGWSRYMPEGMQCSCGPDYYTDNPDYHNES 552
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++FI FI+P+ +I FSY +L+ ++ AAQQQESATTQKA F
Sbjct: 553 YVLYMFIIHFIIPVVVIFFSYGRLICKVREAAAQQQESATTQKAEKEVTRMVILMVLGFM 732
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
+ + PYA A ++ N+ L+++P+FFSKS+ +YNPIIY MNKQF+ C++ +
Sbjct: 733 LAWTPYAVVAFWIFTNKGADFTATLMSVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTIC 912
Query: 319 CGKAMTDESDTCS 331
CGK + D S
Sbjct: 913 CGKNPFGDEDVSS 951
>gb|AF247130.1|AF247130 Dimidiochromis compressiceps putative green sensitive opsin RH2
mRNA, complete cds
Length = 1619
Score = 300 bits (768), Expect = 1e-79
Identities = 142/322 (44%), Positives = 204/322 (63%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ QY++A F L A +M + G P+N++ L T + KKLRQPLNYILVN++
Sbjct: 171 PFEYTQYYLADPIFFKLLAFYMFFLICTGTPINSLTLFVTAQNKKLRQPLNYILVNLAVA 350
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
G ++C F ++ NGYF+ G CA+EGF+ T+ G V WSL LA ERYIV+CKP
Sbjct: 351 GLIMCCFGFTITITSAFNGYFILGSTFCAIEGFMATLGGEVALWSLVVLAIERYIVVCKP 530
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
G+F+FS HA VL TW + + + PP FGWSR+IPEG+QCSCGPD+YT+ + +ES
Sbjct: 531 MGSFKFSGAHAGAGVLFTWIMAMACAAPPLFGWSRYIPEGMQCSCGPDYYTLAPGFNNES 710
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F+ F VP+ +I F+Y L+ +KA AAQQQ+SA+TQKA F
Sbjct: 711 YVIYMFVVHFFVPVFIIFFTYGSLVMTVKAAAAQQQDSASTQKAEKEVTRMCVLMVMGFL 890
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC 319
+ + PYA+FA ++ N+ IP+FF+KS+ +YNP+IY MNKQF+ C++ +
Sbjct: 891 IAWTPYASFAGWIFMNKGASFSALTAAIPAFFAKSSALYNPVIYVLMNKQFRNCMLSTIG 1070
Query: 320 GKAMTDESDTCSSQKTEVSTVS 341
M ++ + S+ KTEVS+VS
Sbjct: 1071MGGMVEDETSVSTSKTEVSSVS 1136
>gb|AF021242.1|AF021242 Melopsittacus undulatus rod opsin mRNA, partial cds
Length = 1053
Score = 300 bits (767), Expect = 2e-79
Identities = 146/329 (44%), Positives = 207/329 (62%), Gaps = 1/329 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + AA+M + L+GFP+N + L T+++KKLR PLNYIL+N++
Sbjct: 67 PFEYPQYYLAEPWKYSGLAAYMFMLILLGFPINFLTLYVTIQHKKLRTPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S NGYFVFG C +EGF T+ G + WSL LA ERY+V+CKP
Sbjct: 247 DLFMVFGGFTTTMYTSMNGYFVFGVAGCYIEGFFATLGGEIALWSLVVLAIERYVVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
+FRF HA+ V+ TW + + + PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 427 MSDFRFGENHAIMGVVFTWIMALACAAPPLFGWSRYIPEGMQCSCGIDYYTLKPEINNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F++ L +I F Y L+ +K AAQQQESATTQKA F
Sbjct: 607 FVIYMFVVHFMIRLMIIFFCYGNLVCTVKESAAQQQESATTQKAEKEVTRMVIIMVIAFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+ PYA+ A Y+ N+ +TIP+FF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 787 ICWGPYASVAFYIFTNQGSDFGPIFMTIPAFFAKSSSIYNPVIYIVMNKQFRNCMITTLC 966
Query: 319 CGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK + + DT S+ KTE S+VS++QV P
Sbjct: 967 CGKNLLGDDDT-SAGKTESSSVSTSQVSP 1050
>gb|U81514.1|REU81514 Raja erinacea rod opsin (RAERRHO) mRNA, complete cds
Length = 1621
Score = 299 bits (765), Expect = 3e-79
Identities = 150/347 (43%), Positives = 214/347 (61%), Gaps = 6/347 (1%)
Frame = +2
Query: 7 EEFYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
E FY+ N + V P+D PQY++ W F AA+M + L G P+N + L T+++K
Sbjct: 140 ENFYVPMSNKTGVVRSPFDYPQYYLGEPWMFSALAAYMFFLILTGLPVNFLTLFVTIQHK 319
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLRQPLNYIL+N++ + + S NGYF+FG C EGF T+ G V W
Sbjct: 320 KLRQPLNYILLNLAVSDLFMVFGGFTTTIITSMNGYFIFGPAGCNFEGFFATLGGEVGLW 499
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
L LA ERY+V+CKP NFRF S+HA+ V+ TW + + + PP GWSR+IPEGLQCS
Sbjct: 500 CLVVLAIERYMVVCKPMANFRFGSQHAIIGVVFTWIMALSCAGPPLVGWSRYIPEGLQCS 679
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CG D+YT+ + +ES+ ++F+ F +PL +I F Y +L+ +K AAQQQES +TQ+A
Sbjct: 680 CGVDYYTMKPEVNNESFVIYMFVVHFTIPLIVIFFCYGRLVCTVKEAAAQQQESESTQRA 859
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
F +C+VPYA+ A Y+ N+ +T+P+FF+KS+ +YNP+IY
Sbjct: 860 EREVTRMVIIMVVAFLICWVPYASVAFYIFINQGCDFTPFFMTVPAFFAKSSAVYNPLIY 1039
Query: 304 CFMNKQFQACIMKMVC-GK--AMTDESDTCSSQKTEVSTVSSTQVGP 347
MNKQF+ C++ +C GK +ES + S+ KTE S+VSS+QV P
Sbjct: 1040ILMNKQFRNCMITTICLGKNPFEEEESTSASASKTEASSVSSSQVAP 1180
>ref|NM_000539.2| Homo sapiens rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa
4, autosomal dominant) (RHO), mRNA
Length = 2767
Score = 299 bits (765), Expect = 3e-79
Identities = 147/338 (43%), Positives = 210/338 (61%), Gaps = 5/338 (1%)
Frame = +3
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 120 FYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 299
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 300 RTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 479
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEGLQCSCG
Sbjct: 480 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCG 659
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 660 IDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEK 839
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +TIP+FF+KSA IYNP+IY
Sbjct: 840 EVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIM 1019
Query: 306 MNKQFQACIMKMV-CGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ + CGK + D+ + + KTE S V+
Sbjct: 1020MNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVA 1133
>gb|U22180.1|RNU22180 Rattus norvegicus opsin gene, complete cds
Length = 1047
Score = 298 bits (764), Expect = 4e-79
Identities = 146/338 (43%), Positives = 212/338 (62%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F NI+ V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNITGVVRSPFEQPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIGLWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C++PYA+ AMY+ ++ +T+P+FF+K+A IYNPIIY
Sbjct: 745 EVTRMVIIMVIFFLICWLPYASVAMYIFTHQGSNFGPIFMTLPAFFAKTASIYNPIIYIM 924
Query: 306 MNKQFQACIM-KMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ + CGK + D+ + ++ KTE S V+
Sbjct: 925 MNKQFRNCMLTSLCCGKNPLGDDEASATASKTETSQVA 1038
>gb|AF310191.1|AF310191 Synthetic construct inferred ancient archosaur visual pigment gene,
complete cds
Length = 1050
Score = 298 bits (764), Expect = 4e-79
Identities = 148/338 (43%), Positives = 209/338 (61%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F AA+M + L+GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNKTGVVRSPFEYPQYYLAEPWQFSALAAYMFLLILLGFPINFLTLYVTIQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S NGYFVFG C +EGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVADLFMVFGGFTTTMYTSMNGYFVFGPTGCNIEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP FGWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWIMALACAAPPLFGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +PL++I F Y +L+ +K AAQQQESATTQKA
Sbjct: 565 VDYYTLKPEVNNESFVIYMFVVHFTIPLTVIFFCYGRLVCTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +TIP+FF+KS+ IYNP+IY
Sbjct: 745 EVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSDFGPIFMTIPAFFAKSSAIYNPVIYIV 924
Query: 306 MNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C I + CGK + D+ + + KTE S V+
Sbjct: 925 MNKQFRNCMITTLCCGKNPLGDDEASTTVSKTETSQVA 1038
>ref|NM_033441.1| Rattus norvegicus Rhodopsin (retinitis pigmentosa 4, autosomal
dominant) (Rho), mRNA
Length = 1493
Score = 298 bits (763), Expect = 5e-79
Identities = 146/338 (43%), Positives = 212/338 (62%), Gaps = 5/338 (1%)
Frame = +3
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F NI+ V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 108 FYVPFSNITGVVRSPFEQPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 287
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 288 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIGLWSL 467
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 468 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG 647
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 648 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 827
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C++PYA+ AMY+ ++ +T+P+FF+K+A IYNPIIY
Sbjct: 828 EVTRMVIIMVIFFLICWLPYASVAMYIFTHQGSNFGPIFMTLPAFFAKTASIYNPIIYIM 1007
Query: 306 MNKQFQACIM-KMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ + CGK + D+ + ++ KTE S V+
Sbjct: 1008MNKQFRNCMLTTLCCGKNPLGDDEASATASKTETSQVA 1121
>emb|Z46957.1|RNOPS R.norvegicus mRNA for rhodopsin
Length = 1493
Score = 298 bits (763), Expect = 5e-79
Identities = 146/338 (43%), Positives = 212/338 (62%), Gaps = 5/338 (1%)
Frame = +3
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F NI+ V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 108 FYVPFSNITGVVRSPFEQPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 287
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 288 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIGLWSL 467
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 468 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG 647
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 648 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 827
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C++PYA+ AMY+ ++ +T+P+FF+K+A IYNPIIY
Sbjct: 828 EVTRMVIIMVIFFLICWLPYASVAMYIFTHQGSNFGPIFMTLPAFFAKTASIYNPIIYIM 1007
Query: 306 MNKQFQACIM-KMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ + CGK + D+ + ++ KTE S V+
Sbjct: 1008MNKQFRNCMLTTLCCGKNPLGDDEASATASKTETSQVA 1121
>emb|AJ277926.1|SCA277926 Serinus canaria partial mRNA for rod opsin (ops5 gene)
Length = 960
Score = 298 bits (762), Expect = 6e-79
Identities = 144/321 (44%), Positives = 200/321 (61%), Gaps = 1/321 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F AA+M + L+GFP+N + L T+++KKLR PLNYIL+N++
Sbjct: 1 PFEYPQYYLAEPWKFSALAAYMFMLILLGFPINFLTLYVTIQHKKLRTPLNYILLNLAVA 180
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S NGYFVFG C +EGF T+ G + WSL LA ERY+V+CKP
Sbjct: 181 DLFMVFGGFTTTMYTSMNGYFVFGVTGCYIEGFFATLGGEIALWSLVVLAIERYVVVCKP 360
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V +W + + + PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 361 MSNFRFGENHAIMGVAFSWIMALACAAPPLFGWSRYIPEGMQCSCGIDYYTLKPEVNNES 540
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F++PL +I F Y L+ +K AAQQQESATTQKA F
Sbjct: 541 FVIYMFVVHFMIPLLIIFFCYGNLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVISFL 720
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA+ A Y+ N+ +TIP+FF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 721 ICWVPYASVAFYIFTNQGSDFGPIFMTIPAFFAKSSAIYNPVIYIVMNKQFRNCMITTLC 900
Query: 319 CGKAMTDESDTCSSQKTEVST 339
CGK + DT S+ KTE S+
Sbjct: 901 CGKNPLGDEDT-SAGKTETSS 960
>dbj|AB043817.1|AB043817 Conger myriaster conf gene for fresh water form rod opsin, complete
cds
Length = 1344
Score = 296 bits (759), Expect = 1e-78
Identities = 146/331 (44%), Positives = 205/331 (61%), Gaps = 3/331 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A WAF +A+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 89 PFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 268
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFG C +EGF T+ G + W L LA ER++V+CKP
Sbjct: 269 DLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKP 448
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V+ TWT+ + ++PP FGWSR+IPEGLQCSCG D+YT +ES
Sbjct: 449 VTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNES 628
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F F +PL++I F Y +L+ +K AAQQQES TTQ+A F
Sbjct: 629 FVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFL 808
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC+VPYA+ A Y+ ++ +TIPSFF+KS+ +YNP+IY MNKQF+ C I +
Sbjct: 809 VCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLC 988
Query: 319 CGKAMTDESD--TCSSQKTEVSTVSSTQVGP 347
CGK +E D + +S KTE S+VSS+ V P
Sbjct: 989 CGKNPFEEEDGASATSSKTEASSVSSSSVSP 1081
>gb|S76579.1|S76579 opsin [Macaca fascicularis=Old World monkeys, retina, Genomic/mRNA,
1848 nt]
Length = 1848
Score = 296 bits (759), Expect = 1e-78
Identities = 146/338 (43%), Positives = 208/338 (61%), Gaps = 5/338 (1%)
Frame = +3
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 120 FYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 299
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C EGF T+ G + WSL
Sbjct: 300 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNAEGFFATLGGEIALWSL 479
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP FGWSR+IPEGLQCSCG
Sbjct: 480 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLFGWSRYIPEGLQCSCG 659
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AQQQESATTQKA
Sbjct: 660 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEARAQQQESATTQKAEK 839
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +TIP+FF+KSA IYNP+IY
Sbjct: 840 EVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSASIYNPVIYIM 1019
Query: 306 MNKQFQACIMKMV-CGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ + CGK + D+ + + KTE S V+
Sbjct: 1020MNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVA 1133
>gb|AF055318.1|AF055318 Phoca groenlandica rod opsin mRNA, complete cds
Length = 1047
Score = 296 bits (758), Expect = 2e-78
Identities = 146/338 (43%), Positives = 209/338 (61%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGVGLTWVMALACAAPPLVGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +T+P+FF+K+A IYNP+IY
Sbjct: 745 EVTRMVIIMVIAFLICWVPYASVAFYIFTHQGFNFGPIFMTLPAFFAKAAAIYNPVIYIM 924
Query: 306 MNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C I + CGK + D+ + S+ KTE S V+
Sbjct: 925 MNKQFRTCMITTLCCGKNPLGDDEVSASASKTETSQVA 1038
>gb|AF008947.1|AF008947 Sus scrofa rhodopsin (PIGRHO1) mRNA, complete cds
Length = 1150
Score = 296 bits (757), Expect = 2e-78
Identities = 146/338 (43%), Positives = 210/338 (61%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFMLIVLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ + TW + + + PP GWSR+IPEGLQCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGLQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +PL +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 IDYYTLKPEVNNESFVIYMFVVHFSIPLVIIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C++PYA+ A Y+ ++ +TIP+FF+KSA IYNP+IY
Sbjct: 745 EVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSDFGPIFMTIPAFFAKSASIYNPVIYIM 924
Query: 306 MNKQFQACIM-KMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ + CGK + D+ + ++ KTE S V+
Sbjct: 925 MNKQFRNCMLTTLCCGKNPLGDDEASTTTSKTETSQVA 1038
>gb|U57539.1|MVU57539 Myripristis violacea rhodopsin mRNA, partial cds
Length = 1469
Score = 296 bits (757), Expect = 2e-78
Identities = 142/329 (43%), Positives = 205/329 (62%), Gaps = 1/329 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ + A+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 59 PYEYPQYYLVYPAAYAVLGAYMFFLIIFGFPVNFLTLYVTIEHKKLRTPLNYILLNLAVA 238
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I S +GYFV GR C LEGF T+ G++ WSL LA ER++V+CKP
Sbjct: 239 DLFMVIGGFTTTIYTSMHGYFVLGRLGCNLEGFSATLGGMIGLWSLVVLAIERWVVVCKP 418
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW +G+ ++PP GWSR+IPEG+QCSCG D+YT + ++S
Sbjct: 419 MSNFRFGENHAIMGVTLTWVMGLACTVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNDS 598
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F+ F++PL +I F Y +LL A+K AA QQES TTQ+A F
Sbjct: 599 YVLYMFVCHFLIPLVVIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVIGFL 778
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMV 318
VC++PYA+ A Y+ ++ +TIP+FF+KS+ IYNP+IY MNKQF+ C++ +
Sbjct: 779 VCWLPYASVAWYIFTHQGSEFGPLFMTIPAFFAKSSSIYNPVIYICMNKQFRQCMLTTLF 958
Query: 319 CGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK +E + SS KTE S+ SS+ V P
Sbjct: 959 CGKNPFEEEEGASSTKTEASSASSSSVSP 1045
>gb|U21688.1|OCU21688 Oryctolagus cuniculus rhodopsin mRNA, complete cds
Length = 1198
Score = 295 bits (756), Expect = 3e-78
Identities = 140/324 (43%), Positives = 204/324 (62%), Gaps = 2/324 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKLR PLNYIL+N++
Sbjct: 78 PFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA 257
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + S +GYFVFG C +EGF T+ G + WSL LA ERY+V+CKP
Sbjct: 258 DLFMVLGGFTTTLYTSLHGYFVFGPTGCNVEGFFATLGGEIALWSLVVLAIERYVVVCKP 437
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 438 MSNFRFGENHAIMGVAFTWIMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNES 617
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F +PL +I F Y QL+ +K AAQQQESATTQKA F
Sbjct: 618 FVIYMFVVHFTIPLIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFL 797
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
+C+VPYA+ A Y+ ++ +TIP+FF+KS+ IYNP+IY MNKQF+ C++ +
Sbjct: 798 ICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTIC 977
Query: 319 CGK-AMTDESDTCSSQKTEVSTVS 341
CGK + D+ + ++ KTE S V+
Sbjct: 978 CGKNPLGDDEASATASKTETSQVA 1049
>gb|AF055317.1|AF055317 Phoca vitulina rod opsin mRNA, complete cds
Length = 1047
Score = 295 bits (756), Expect = 3e-78
Identities = 146/338 (43%), Positives = 209/338 (61%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNKTGVVRSPFEFPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGVGFTWVMALACAAPPLVGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +T+P+FF+K+A IYNP+IY
Sbjct: 745 EVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKAASIYNPVIYIM 924
Query: 306 MNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C I + CGK + D+ + S+ KTE S V+
Sbjct: 925 MNKQFRTCMITTLCCGKNPLGDDEVSASASKTETSQVA 1038
>gb|S82619.1|S82619 blue-sensitive rod visual pigment/opsin [Congridae=conger eels,
retina, mRNA Partial, 1456 nt]
Length = 1456
Score = 295 bits (756), Expect = 3e-78
Identities = 142/324 (43%), Positives = 203/324 (61%), Gaps = 1/324 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A WAF + AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PFEYPQYYLAEPWAFSILAAYMFFLIITGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFG C LEG+ T+ G ++ WSL LA ER++V+CKP
Sbjct: 247 DLFMVFGGFTTTMYTSMHGYFVFGETGCNLEGYFATLGGEISLWSLVVLAIERWVVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ + TW + ++PP FGWSR+IPEGLQCSCG D+YT+ + +ES
Sbjct: 427 ISNFRFGENHAIMGLTLTWVMANACAMPPLFGWSRYIPEGLQCSCGIDYYTLKPEVNNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F +PL++I F Y +L+ A+K AAQQQES TTQ+A F
Sbjct: 607 FVIYMFLVHFTIPLTIISFCYGRLVCAVKEAAAQQQESETTQRAEREVTRMVVIMVISFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A Y+ ++ +T+PSFF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 787 VCWIPYASVAWYIFTHQGSTFGPIFMTVPSFFAKSSSIYNPMIYICMNKQFRNCMITTLF 966
Query: 319 CGKAMTDESDTCSSQKTEVSTVSS 342
CGK + + S+ KTE S VSS
Sbjct: 967 CGKNPFEGEEEGSTTKTEASAVSS 1038
>gb|BC013125.1|BC013125 Mus musculus, Similar to rhodopsin (opsin 2, rod pigment)
(retinitis pigmentosa 4, autosomal dominant), clone
MGC:21585 IMAGE:4500760, mRNA, complete cds
Length = 3249
Score = 295 bits (756), Expect = 3e-78
Identities = 142/338 (42%), Positives = 212/338 (62%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N++ V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 103 FYVPFSNVTGVVRSPFEQPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 282
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 283 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 462
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V+ TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 463 VVLAIERYVVVCKPMSNFRFGENHAIMGVVFTWIMALACAAPPLVGWSRYIPEGMQCSCG 642
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 643 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 822
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C++PYA+ A Y+ ++ +T+P+FF+KS+ IYNP+IY
Sbjct: 823 EVTRMVIIMVIFFLICWLPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIM 1002
Query: 306 MNKQFQACIM-KMVCGK-AMTDESDTCSSQKTEVSTVS 341
+NKQF+ C++ + CGK + D+ + ++ KTE S V+
Sbjct: 1003LNKQFRNCMLTTLCCGKNPLGDDDASATASKTETSQVA 1116
>gb|L78008.1|ANGDSROD Anguilla anguilla deep-sea rhodopsin mRNA, partial cds
Length = 1056
Score = 295 bits (756), Expect = 3e-78
Identities = 151/347 (43%), Positives = 218/347 (62%), Gaps = 13/347 (3%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ NI+ V P++ PQY++A WA+ + AA+M T+ L+GFP+N + L T+ +KKL
Sbjct: 25 FYIPMSNITGVVRSPFEYPQYYLAEPWAYTILAAYMFTLILLGFPVNFLTLYVTIEHKKL 204
Query: 66 RQPLNYILVNVS-------FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
R PLNYIL+N++ FGGF +++ S +GYFVFG C LEG+ T+ G
Sbjct: 205 RTPLNYILLNLAVANLFMVFGGFTTTVYT-------SMHGYFVFGETGCNLEGYFATLGG 363
Query: 119 LVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPE 178
++ WSL LA ER++V+CKP NFRF HA+ + TW + ++PP FGWSR+IPE
Sbjct: 364 EISLWSLVVLAIERWVVVCKPMSNFRFGENHAIMGLAFTWIMANSCAMPPLFGWSRYIPE 543
Query: 179 GLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA 238
G+QCSCG D+YT+ + +ES+ ++FI F VPL++I F Y +L+ +K AAQQQES
Sbjct: 544 GMQCSCGVDYYTLKPEVNNESFVIYMFIVHFSVPLTIISFCYGRLVCTVKEAAAQQQESE 723
Query: 239 TTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIY 298
TTQ+A F VC+VPYA+ A Y+ ++ +T+PSFF+KS+ IY
Sbjct: 724 TTQRAEREVTRMVVIMVIAFLVCWVPYASVAWYIFTHQGSTFGPVFMTVPSFFAKSSAIY 903
Query: 299 NPIIYCFMNKQFQAC-IMKMVCGK--AMTDESDTCSSQKTEVSTVSS 342
NP+IY +N QF+ C I + CGK +E + ++ KTE S+VSS
Sbjct: 904 NPLIYICLNSQFRNCMITTLFCGKNPFQEEEGASTTASKTEASSVSS 1044
>gb|S74449.1|S74449 rhodopsin [Cyprinus carpio=carp, retina, mRNA, 1584 nt]
Length = 1584
Score = 295 bits (756), Expect = 3e-78
Identities = 145/331 (43%), Positives = 204/331 (60%), Gaps = 3/331 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++ WA+ AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 138 PYDYPQYYLVAPWAYGCLAAYMFFLIITGFPINFLTLYVTIEHKKLRTPLNYILLNLAIS 317
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFGR C LEGF T+ G + WSL LAFER++V+CKP
Sbjct: 318 DLFMVFGGFTTTMYTSLHGYFVFGRIGCNLEGFFATLGGEMGLWSLVVLAFERWMVVCKP 497
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V+ TW + ++PP GWSR+IPEG+QCSCG D+YT Y +ES
Sbjct: 498 VSNFRFGENHAIMGVVFTWFMACTCAVPPLVGWSRYIPEGMQCSCGVDYYTRAPGYNNES 677
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ FI+PL +I F Y +L+ +K AAQQQES TTQ+A F
Sbjct: 678 FVIYMFLVHFIIPLIVIFFCYGRLVCTVKDAAAQQQESETTQRAEREVTRMVVIMVIGFL 857
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C++PYA+ A Y+ ++ +T+P+FF+KSA +YNP IY MNKQF+ C I +
Sbjct: 858 ICWIPYASVAWYIFTHQGSEFGPVFMTVPAFFAKSAAVYNPCIYICMNKQFRHCMITTLC 1037
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 1038CGKNPFEEEEGASTTASKTEASSVSSSSVSP 1130
>gb|U02475.1|CCRHOD Cyprinus carpio rhodopsin mRNA, complete cds
Length = 1584
Score = 295 bits (756), Expect = 3e-78
Identities = 145/331 (43%), Positives = 204/331 (60%), Gaps = 3/331 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++ WA+ AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 138 PYDYPQYYLVAPWAYGCLAAYMFFLIITGFPINFLTLYVTIEHKKLRTPLNYILLNLAIS 317
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFGR C LEGF T+ G + WSL LAFER++V+CKP
Sbjct: 318 DLFMVFGGFTTTMYTSLHGYFVFGRIGCNLEGFFATLGGEMGLWSLVVLAFERWMVVCKP 497
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V+ TW + ++PP GWSR+IPEG+QCSCG D+YT Y +ES
Sbjct: 498 VSNFRFGENHAIMGVVFTWFMACTCAVPPLVGWSRYIPEGMQCSCGVDYYTRAPGYNNES 677
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ FI+PL +I F Y +L+ +K AAQQQES TTQ+A F
Sbjct: 678 FVIYMFLVHFIIPLIVIFFCYGRLVCTVKDAAAQQQESETTQRAEREVTRMVVIMVIGFL 857
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C++PYA+ A Y+ ++ +T+P+FF+KSA +YNP IY MNKQF+ C I +
Sbjct: 858 ICWIPYASVAWYIFTHQGSEFGPVFMTVPAFFAKSAAVYNPCIYICMNKQFRHCMITTLC 1037
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 1038CGKNPFEEEEGASTTASKTEASSVSSSSVSP 1130
>dbj|AB043818.1|AB043818 Conger myriaster cond mRNA for deep-sea form rod opsin, complete
cds
Length = 1237
Score = 295 bits (754), Expect = 5e-78
Identities = 142/324 (43%), Positives = 203/324 (61%), Gaps = 1/324 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A WAF + AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 89 PFEYPQYYLAEPWAFSILAAYMFFLIITGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 268
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFG C LEG+ T+ G ++ WSL LA ER++V+CKP
Sbjct: 269 DLFMVFGGFTTTMYTSMHGYFVFGETGCNLEGYFATLGGEISLWSLVVLAIERWMVVCKP 448
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ + TW + ++PP FGWSR+IPEGLQCSCG D+YT+ + +ES
Sbjct: 449 ISNFRFGENHAIMGLTLTWIMANACAMPPLFGWSRYIPEGLQCSCGIDYYTLKPEVNNES 628
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F +PL++I F Y +L+ A+K AAQQQES TTQ+A F
Sbjct: 629 FVIYMFVVHFTIPLTIISFCYGRLVCAVKEAAAQQQESETTQRAEREVTRMVIIMVISFL 808
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A Y+ ++ +T+PSFF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 809 VCWIPYASVAWYIFTHQGSTFGPIFMTVPSFFAKSSSIYNPMIYICMNKQFRHCMITTLF 988
Query: 319 CGKAMTDESDTCSSQKTEVSTVSS 342
CGK + + S+ KTE S VSS
Sbjct: 989 CGKNPFEGEEEGSTTKTEASAVSS 1060
>emb|Y14484.1|ZFOPSIN Zeus faber gene encoding opsin
Length = 1065
Score = 295 bits (754), Expect = 5e-78
Identities = 147/331 (44%), Positives = 205/331 (61%), Gaps = 3/331 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++ AF + AA+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYDYPQYYLVNPAAFSMLAAYMFFLILVGFPVNFLTLYVTMEHKKLRTPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I S +GYFV GR C LEGF T+ G + WSL LA ER++V+CKP
Sbjct: 247 NLFMVIGGFTTTMYTSMHGYFVLGRTGCNLEGFFATLGGEIALWSLVVLAVERWVVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + S+PP FGWSR+IPEG+QCSCG D+YT Y +ES
Sbjct: 427 ISNFRFGENHAVMGVSFTWLMACACSVPPLFGWSRYIPEGMQCSCGIDYYTRAPGYNNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F +PL++I F Y +LL A+K AA QQES TTQ+A F
Sbjct: 607 FVIYMFVCHFSIPLTIIFFCYGRLLCAVKDAAAAQQESETTQRAEREVSRMVVIMVIGFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C++PYA+ A ++ ++ +TIP+FF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 787 ICWLPYASVAWFIFTHQGSEFGPVFMTIPAFFAKSSAIYNPMIYICMNKQFRHCMITTLC 966
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 967 CGKNPFEEEEGASTTASKTEASSVSSSHVSP 1059
>emb|Y18680.1|MSUY18680 Mullus surmuletus mRNA for putative green sensitive cone opsin
Length = 1455
Score = 294 bits (753), Expect = 7e-78
Identities = 140/322 (43%), Positives = 200/322 (61%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ + L A +M + G P+N + L+ T + KKL+QPLNYILVN++
Sbjct: 67 PFEYPQYYMVDPMIYKLLAFYMFFLICTGTPINGLTLLVTFQNKKLQQPLNYILVNLAVV 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
G ++C F ++ NGYF+ G CA+EGF+ T+ G V WSL LA ERYIV+CKP
Sbjct: 247 GLIMCAFGFTITITSALNGYFILGPTFCAIEGFMATLGGEVALWSLVVLAVERYIVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
G+F+FS HA V TW + + PP FGWSR++PEG+QCSCGPD+YT+ + +ES
Sbjct: 427 MGSFKFSGTHAGAGVAFTWIMAFACAGPPLFGWSRYLPEGMQCSCGPDYYTLAPGFNNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F+ F VP+ +I F+Y L+ +KA AAQQQES +TQKA F
Sbjct: 607 YVIYMFVVHFFVPVFVIFFTYGSLVLTVKAAAAQQQESESTQKAEREVTRMCILMVIGFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC 319
V +VPYA FA ++ N+ +P+FF+KS+ +YNP+IY MNKQF+ CI+ +
Sbjct: 787 VAWVPYATFAGWIFLNKGAAFTALTAALPAFFAKSSALYNPVIYVMMNKQFRNCILSAIG 966
Query: 320 GKAMTDESDTCSSQKTEVSTVS 341
M ++ + S+ KTEVST S
Sbjct: 967 MGGMVEDETSVSTSKTEVSTAS 1032
>emb|AJ249203.1|AJA249203 Anguilla japonica mRNA for deep-sea type rod opsin (dso gene)
Length = 1497
Score = 294 bits (753), Expect = 7e-78
Identities = 145/340 (42%), Positives = 212/340 (61%), Gaps = 6/340 (1%)
Frame = +3
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ NI+ V P++ PQY++A WA+ + AA+M T+ L+GFP+N + L T+ +KKL
Sbjct: 99 FYIPMSNITGVVRSPFEYPQYYLAEPWAYTILAAYMFTLILLGFPVNFLTLYVTIEHKKL 278
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEG+ T+ G ++ WSL
Sbjct: 279 RTPLNYILLNLAVANLFMVFGGFTTTMYTSMHGYFVFGETGCNLEGYFATLGGEISLWSL 458
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ER++V+CKP NFRF HA+ + TW + ++PP FGWSR+IPEG+QCSCG
Sbjct: 459 VVLAIERWVVVCKPMSNFRFGENHAIMGLAFTWIMANTCALPPLFGWSRYIPEGMQCSCG 638
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++FI F +PL++I F Y +L+ +K AAQQQES TTQ+A
Sbjct: 639 VDYYTLKPEVNNESFVIYMFIVHFSIPLTIISFCYGRLVCTVKEAAAQQQESETTQRAER 818
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F VC++PYA+ A Y+ ++ +T+PSFF+KS+ IYNP+IY
Sbjct: 819 EVTRMVVIMVIAFLVCWIPYASVAWYIFTHQGSTFGPVFMTVPSFFAKSSAIYNPLIYIC 998
Query: 306 MNKQFQAC-IMKMVCGK--AMTDESDTCSSQKTEVSTVSS 342
+N QF+ C I + CGK +E + ++ KTE S+VSS
Sbjct: 999 LNSQFRNCMITTLFCGKNPFQEEEGASTTASKTEASSVSS 1118
>emb|X71380.1|CFOPSIN C.familiaris gene for opsin
Length = 2589
Score = 294 bits (753), Expect = 7e-78
Identities = 145/338 (42%), Positives = 209/338 (60%), Gaps = 5/338 (1%)
Frame = +2
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 161 FYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 340
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C +EGF T+ G + WSL
Sbjct: 341 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNVEGFFATLGGEIALWSL 520
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 521 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGMQCSCG 700
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 701 IDYYTLKPEINNESFVIYMFVVHFAIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 880
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +T+P+FF+KS+ IYNP+IY
Sbjct: 881 EVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSDFGPIFMTLPAFFAKSSSIYNPVIYIM 1060
Query: 306 MNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C I + CGK + D+ + S+ KTE S V+
Sbjct: 1061MNKQFRNCMITTLCCGKNPLGDDEASASASKTETSQVA 1174
>dbj|AB025312.1|AB025312 Danio rerio mRNA for exo-rhodopsin, complete cds
Length = 1065
Score = 294 bits (752), Expect = 9e-78
Identities = 145/331 (43%), Positives = 205/331 (61%), Gaps = 3/331 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F L AA+M + L FP+NA+ L T+++KKLR PLNYIL+N++
Sbjct: 67 PFEEPQYYLAEPWQFSLLAAYMLFLILGSFPINALTLYVTVQHKKLRTPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + + +GYF+ G C +EGF T+ G + WSL LA ERYIV+CKP
Sbjct: 247 DLFMVLGGFTVTLYTALHGYFLLGVTGCNIEGFFATLGGEIALWSLVVLAIERYIVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
FRF KHA+ V TW + + ++PP GWSR+IPEG+QCSCG D+YT + + S
Sbjct: 427 MSTFRFGEKHAIIGVGFTWVMALTCAVPPLLGWSRYIPEGMQCSCGIDYYTPKPEVHNTS 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL +I F Y++LL ++A AAQQQES TTQ+A F
Sbjct: 607 FVIYMFILHFSIPLLIIFFCYSRLLCTVRAAAAQQQESETTQRAEREVTRMVVVMVIAFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
VC+VPYA+ A Y+ N+ +T+P+FF+KSA +YNP+IY +N+QF+ C++ V
Sbjct: 787 VCWVPYASVAWYIFANQGAEFGPVFMTVPAFFAKSAALYNPVIYIMLNRQFRNCMLSTVC 966
Query: 319 CGK--AMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK DES + S KT+ S VSS QV P
Sbjct: 967 CGKNPLAEDESSSAVSSKTQSSVVSSAQVSP 1059
>gb|M12689.1|SYNBOVRDPA Synthetic bovine rhodopsin gene, complete cds
Length = 1053
Score = 293 bits (751), Expect = 1e-77
Identities = 144/338 (42%), Positives = 207/338 (60%), Gaps = 5/338 (1%)
Frame = +3
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 30 FYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 209
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 210 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 389
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 390 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG 569
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT + +ES+ ++F+ FI+PL +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 570 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 749
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C++PYA A Y+ ++ +TIP+FF+K++ +YNP+IY
Sbjct: 750 EVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIM 929
Query: 306 MNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C + + CGK + D+ + + KTE S V+
Sbjct: 930 MNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVA 1043
>dbj|AB062417.1|AB062417 Synthetic construct Bos taurus mRNA for rhodopsin, complete cds
Length = 1047
Score = 293 bits (751), Expect = 1e-77
Identities = 144/338 (42%), Positives = 207/338 (60%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT + +ES+ ++F+ FI+PL +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C++PYA A Y+ ++ +TIP+FF+K++ +YNP+IY
Sbjct: 745 EVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIM 924
Query: 306 MNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C + + CGK + D+ + + KTE S V+
Sbjct: 925 MNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVA 1038
>gb|M21606.1|BOVOPSA Bovine opsin mRNA, 3' end, clone LR-8
Length = 2420
Score = 293 bits (751), Expect = 1e-77
Identities = 144/338 (42%), Positives = 207/338 (60%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 10 FYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 189
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C LEGF T+ G + WSL
Sbjct: 190 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSL 369
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 370 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG 549
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT + +ES+ ++F+ FI+PL +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 550 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 729
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C++PYA A Y+ ++ +TIP+FF+K++ +YNP+IY
Sbjct: 730 EVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGFDFGPIFMTIPAFFAKTSAVYNPVIYIM 909
Query: 306 MNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C + + CGK + D+ + + KTE S V+
Sbjct: 910 MNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVA 1023
>gb|U57538.1|MBU57538 Myripristis berndti rhodopsin mRNA, partial cds
Length = 1469
Score = 293 bits (751), Expect = 1e-77
Identities = 142/329 (43%), Positives = 204/329 (61%), Gaps = 1/329 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ AF + A+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 59 PYEYPQYYLVYPAAFAVLGAYMFFLIIFGFPVNFLTLYVTIEHKKLRTPLNYILLNLAVA 238
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I S +GYFV GR C LEGF T+ G+++ WSL LA ER++V+CKP
Sbjct: 239 DLFMVIGGFTTTIYTSMHGYFVLGRLGCNLEGFSATLGGMISLWSLVVLAVERWVVVCKP 418
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW +G+ ++PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 419 MSNFRFGENHAIMGVTLTWAMGLACTVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNES 598
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F PL +I F Y +LL A+K AA QQES TTQ+A F
Sbjct: 599 FVLYMFVCHFSFPLVVIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVIGFL 778
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMV 318
VC++PYA+ A Y+ ++ +TIP+FF+KS+ IYNP+IY +NKQF+ C++ +
Sbjct: 779 VCWLPYASVAWYIFTHQGSEFGPLFMTIPAFFAKSSAIYNPVIYICLNKQFRQCMLTTLF 958
Query: 319 CGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK +E + SS KTE S+ SS+ V P
Sbjct: 959 CGKNPFEEEEGASSTKTEASSASSSSVSP 1045
>gb|AF021240.1| Anas platyrhynchos rod opsin mRNA, partial cds
Length = 966
Score = 293 bits (750), Expect = 2e-77
Identities = 139/310 (44%), Positives = 192/310 (61%), Gaps = 1/310 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F AA+M + L+GFP+N + L T+++KKLR PLNYIL+N++
Sbjct: 37 PFEYPQYYLAEPWKFSALAAYMFMLILLGFPINFLTLYVTIQHKKLRTPLNYILLNLAVA 216
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S NGYFVFG C +EGF T+ G + WSL LA ERY+V+CKP
Sbjct: 217 DLFMVFGGFTTTMYTSMNGYFVFGVTGCYIEGFFATLGGEIALWSLVVLAIERYVVVCKP 396
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V+ TW + + + PP FGWSR+IPEG+QCSCG D+YT+ + +ES
Sbjct: 397 MSNFRFGENHAIMGVVFTWIMALACAAPPLFGWSRYIPEGMQCSCGIDYYTLKPEVNNES 576
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F +PL +I F Y L+ +K AAQQQESATTQKA F
Sbjct: 577 FVIYMFVVHFTIPLMVIFFCYGNLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFL 756
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+VPYA+ A Y+ N+ +TIP+FF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 757 ICWVPYASVAFYIFTNQGSDFGPIFMTIPAFFAKSSAIYNPVIYIVMNKQFRNCMITTLC 936
Query: 319 CGKAMTDESD 328
CGK + D
Sbjct: 937 CGKNPLGDED 966
>gb|AF055319.1|AF055319 Trichechus manatus rod opsin mRNA, complete cds
Length = 1047
Score = 293 bits (750), Expect = 2e-77
Identities = 144/338 (42%), Positives = 207/338 (60%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C +EGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNVEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ V TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +T+P+FF+KSA IYNP+IY
Sbjct: 745 EVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSASIYNPVIYIM 924
Query: 306 MNKQFQACIMKMV-CGK-AMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ + CGK +E + KTE S V+
Sbjct: 925 MNKQFRNCMLTTICCGKNPFAEEEGATTVSKTETSQVA 1038
>gb|AF055314.1|AF055314 Delphinus delphis rod opsin mRNA, complete cds
Length = 1047
Score = 293 bits (750), Expect = 2e-77
Identities = 143/338 (42%), Positives = 207/338 (60%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNKTGVVRSPFEYPQYYLAEPWQFSVLAAYMFLLIVLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S + YFVFG C LEGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVANLFMVFGGFTTTLYTSLHAYFVFGPTGCNLEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ + TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGLALTWIMAMACAAPPLVGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT+ + +ES+ ++F+ F +PL +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 IDYYTLSPEVNNESFVIYMFVVHFTIPLVIIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +TIPSFF+KS+ IYNP+IY
Sbjct: 745 EVTRMVIIMVVAFLICWVPYASVAFYIFTHQGSDFGPIFMTIPSFFAKSSSIYNPVIYIM 924
Query: 306 MNKQFQACIMKMVC--GKAMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ +C + D+ + ++ KTE S V+
Sbjct: 925 MNKQFRNCMLTTLCCGRNPLGDDEASTTASKTETSQVA 1038
>emb|AJ277924.1|SCA277924 Serinus canaria partial mRNA for MW-sensitive opsin (ops3 gene)
Length = 931
Score = 293 bits (750), Expect = 2e-77
Identities = 137/299 (45%), Positives = 189/299 (62%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + L ++ + GFP+N + L+ T ++KKLRQPLNYILVN++
Sbjct: 34 PFEYPQYYLAEPWKYRLVCCYIFFLISTGFPINFLTLLVTFKHKKLRQPLNYILVNLAVA 213
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ F F + NGYFVFG CA+EGF T+ G V WSL LA ERYIVICKP
Sbjct: 214 DLCMACFGFTVTFYTAWNGYFVFGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVICKP 393
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GNFRFS+ HA+ + TW + I + PP FGWSR+IPEG+QCSCGPD+YT + +ES
Sbjct: 394 MGNFRFSASHAMMGIAFTWVMAISCAAPPLFGWSRYIPEGMQCSCGPDYYTHNPDFHNES 573
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F+ I+P+ +I FSY +L+ + AAQQQESATTQKA F
Sbjct: 574 YVLYMFVIHSIIPVVIIFFSYGRLVCKVPEAAAQQQESATTQKAEKEVTRMVILMVLGFM 753
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
+ + PYA A ++ N+ L+ +P+FFSKS+ +YNPIIY MNKQF+ C++ +
Sbjct: 754 LAWTPYAVVAFWIFTNKGADFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI 930
>gb|AF055316.1|AF055316 Mesoplodon bidens rod opsin mRNA, complete cds
Length = 1047
Score = 293 bits (749), Expect = 2e-77
Identities = 141/338 (41%), Positives = 207/338 (60%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNHTGVVRSPFEYPQYYLAEPWQFSVLAAYMFLLIMLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + + S + YF+FG C LEGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVANLFMVLGGFTTTLYTSMHAYFIFGPTGCNLEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ + TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGLALTWIMALACAAPPLVGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT + +ES+ ++F+ F +P+ +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 VDYYTPSPEVNNESFVVYMFVVHFSIPMVIIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +TIPSFF+KS+ IYNP+IY
Sbjct: 745 EVTRMVVIMVVAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPSFFAKSSAIYNPVIYIM 924
Query: 306 MNKQFQACIMKMVC--GKAMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ +C + D+ + ++ KTE S V+
Sbjct: 925 MNKQFRNCMLTTLCCGRNPLGDDEVSTTASKTETSQVA 1038
>emb|Y18678.1|ZOPY18678 Zosterisessor ophiocephalus mRNA for opsin
Length = 1417
Score = 290 bits (743), Expect = 1e-76
Identities = 144/348 (41%), Positives = 209/348 (59%), Gaps = 5/348 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P++ PQY++ A+ A+M + L+GFP+N + L TL
Sbjct: 10 TEGPFFYIPMVNTTGIVRSPYEYPQYYLVNPAAYACLGAYMFFLILVGFPVNFLTLYVTL 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C +EGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNIEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ V TW + ++PP GWSR+IPEG+
Sbjct: 370 ALWSLVVLAIERWVVVCKPISNFRFGENHAIMGVAFTWFMASACAVPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++FI F +PL+++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGVDYYTRAEGFNNESFVIYMFIVHFCIPLAVVGFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC++PYA+ A Y+ ++ +T+P+FF+KS+ IYNP
Sbjct: 730 QRAEREVSRMVVIMVIGFLVCWLPYASVAWYIFTHQGSEFGPPFMTVPAFFAKSSSIYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S+ KTE S+VSS+ V P
Sbjct: 910 MIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTKTEASSVSSSSVSP 1053
>gb|AY036959.1| Salmo salar ultraviolet opsin mRNA, partial cds
Length = 642
Score = 290 bits (741), Expect = 2e-76
Identities = 134/212 (63%), Positives = 164/212 (77%)
Frame = +1
Query: 32 WAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPV 91
WAFYLQAAFMG VF G PLN ++LV T++YKKLRQPLN+ILVN+S GF+ FSV V
Sbjct: 1 WAFYLQAAFMGFVFFAGTPLNFIILVVTVKYKKLRQPLNFILVNISLAGFIFVTFSVSQV 180
Query: 92 FVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHAL 151
FV+S GY+ G +CA+E +G++AGLV+ WSLA LAFERY+VICKPFG F+F + AL
Sbjct: 181 FVSSARGYYFLGYTLCAMEACMGSIAGLVSAWSLAVLAFERYVVICKPFGTFKFDNNQAL 360
Query: 152 TVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIV 211
V TW +GIG + PPFFGWSR+IPEGL CSCGPDWYT +Y SYT FL + CF++
Sbjct: 361 AAVAFTWVMGIGCATPPFFGWSRYIPEGLGCSCGPDWYTNNEEYHCASYTKFLIVTCFLM 540
Query: 212 PLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
P+S+I FSY+QLL AL+AVAA Q ESA+TQKA
Sbjct: 541 PMSIIFFSYSQLLGALRAVAAAQAESASTQKA 636
>gb|U12328.1|AMU12328 Astyanax mexicanus rhodopsin gene, complete cds
Length = 1059
Score = 290 bits (741), Expect = 2e-76
Identities = 139/326 (42%), Positives = 202/326 (61%), Gaps = 3/326 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++AP WA+ AA+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYEYPQYYLAPPWAYACLAAYMFFLILVGFPVNFLTLYVTIEHKKLRTPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S NGYFVFGR C LEGF T G+ + W L L+ ER++V+CKP
Sbjct: 247 DLFMVFGGFTTTMYTSLNGYFVFGRLGCNLEGFFATFGGINSLWCLVVLSIERWVVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + ++PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 427 MSNFRFGENHAIMGVAFTWFMALACTVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F+ PL +I F Y +L+ +K AAQQQES TTQ+A +
Sbjct: 607 FVIYMFVVHFLTPLFVITFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVILMFIAYL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ + ++ N+ +T+P+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 787 VCWLPYASVSWWIFTNQGSEFGPIFMTVPAFFAKSSSIYNPVIYICLNKQFRHCMITTLC 966
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSS 342
CGK +E + S + KTE S+VSS
Sbjct: 967 CGKNPFEEEEGASTTASKTEASSVSS 1044
>emb|Y18675.1|GNIY18675 Gobius niger mRNA for opsin
Length = 1403
Score = 289 bits (740), Expect = 2e-76
Identities = 149/355 (41%), Positives = 214/355 (59%), Gaps = 12/355 (3%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P++ PQY++ A+ A+M + L+GFP+N + L TL
Sbjct: 10 TEGPFFYIPMVNTTGVVRSPYEYPQYYLVNPAAYACLGAYMFFLILVGFPVNFLTLYVTL 189
Query: 61 RYKKLRQPLNYILVNVS-------FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFL 113
+KKLR PLNYIL+N++ FGGF I++ S +GYFV GR C +EGF
Sbjct: 190 EHKKLRTPLNYILLNLAVADLFMVFGGFTTTIYT-------SMHGYFVLGRLGCNIEGFF 348
Query: 114 GTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWS 173
T+ G + WSL LA ER++V+CKP NFRF HA+ V TW + ++PP GWS
Sbjct: 349 ATLGGEIALWSLVVLAIERWVVVCKPISNFRFGENHAIMGVAFTWFMASACAVPPLVGWS 528
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQ 233
R+IPEG+QCSCG D+YT + +ES+ ++F F +PL+++ F Y +LL A+K AA
Sbjct: 529 RYIPEGMQCSCGIDYYTRAEGFNNESFVIYMFTVHFCIPLAVVGFCYGRLLCAVKEAAAA 708
Query: 234 QQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSK 293
QQES TTQ+A F VC++PYA+ A Y+ ++ +TIP+FF+K
Sbjct: 709 QQESETTQRAEREVSRMVVIMVIGFLVCWLPYASVAWYIFTHQGSEFGPLFMTIPAFFAK 888
Query: 294 SACIYNPIIYCFMNKQFQAC-IMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
S+ IYNP+IY MNKQF+ C I + CGK +E + S+ KTE S+VSS+ V P
Sbjct: 889 SSSIYNPMIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTKTEASSVSSSSVSP 1053
>dbj|AB001603.1|AB001603 Oryzias latipes mRNA for KFH-G, complete cds
Length = 1452
Score = 289 bits (740), Expect = 2e-76
Identities = 141/323 (43%), Positives = 204/323 (62%), Gaps = 1/323 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W F L +M + L GFP+NA+ LV T + KKLRQPLN+ILVN++
Sbjct: 133 PYEYPQYYLADPWQFKLLGIYMFFLILTGFPINALTLVVTAQNKKLRQPLNFILVNLAVA 312
Query: 80 GFLLCIFSVFPVFVASCN-GYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
G ++ F F V + SC GYF G C +EGF+ T+ G V+ WSL LA ERYIV+CK
Sbjct: 313 GLIMVCFG-FTVCIYSCMVGYFSLGPLGCTIEGFMATLGGQVSLWSLVVLAIERYIVVCK 489
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
P G+F+F++ H+ TW + ++PP GWSR+IPEG+Q SCGPD+YT+ + +E
Sbjct: 490 PMGSFKFTATHSAAGCAFTWIMASSCAVPPLVGWSRYIPEGIQVSCGPDYYTLAPGFNNE 669
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
S+ ++F F VP+ I F+Y L+ +KA AAQQQ+SA+TQKA F
Sbjct: 670 SFVMYMFSCHFCVPVFTIFFTYGSLVMTVKAAAAQQQDSASTQKAEKEVTRMCFLMVLGF 849
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
+ +VPYA++A ++ NR + IPSFFSKS+ ++NPIIY +NKQF+ C++ +
Sbjct: 850 LLAWVPYASYAAWIFFNRGAAFSAMSMAIPSFFSKSSALFNPIIYILLNKQFRNCMLATI 1029
Query: 319 CGKAMTDESDTCSSQKTEVSTVS 341
M ++ + S+ KTEVST +
Sbjct: 1030GMGGMVEDETSVSTSKTEVSTAA 1098
>gb|L11863.1|CRAROD Carassius auratus rod opsin mRNA, complete cds
Length = 1352
Score = 289 bits (739), Expect = 3e-76
Identities = 142/331 (42%), Positives = 202/331 (60%), Gaps = 3/331 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++ WA+ AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 108 PYDYPQYYLVAPWAYACLAAYMFFLIITGFPVNFLTLYVTIEHKKLRTPLNYILLNLAIS 287
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFGR C EGF T+ G + WSL LAFER++V+CKP
Sbjct: 288 DLFMVFGGFTTTMYTSLHGYFVFGRVGCNPEGFFATLGGEMGLWSLVVLAFERWMVVCKP 467
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V+ TW + ++PP GWSR+IPEG+QCSCG D+YT Y +ES
Sbjct: 468 VSNFRFGENHAIMGVVFTWFMACTCAVPPLVGWSRYIPEGMQCSCGVDYYTRPQAYNNES 647
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI FI+PL +I F Y +L+ +K AAQ +ES TTQ+A F
Sbjct: 648 FVIYMFIVHFIIPLIVIFFCYGRLVCTVKEAAAQHEESETTQRAEREVTRMVVIMVIGFL 827
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C++PYA+ A Y+ ++ +T+P+FF+K+A +YNP IY MNKQF+ C I +
Sbjct: 828 ICWIPYASVAWYIFTHQGSEFGPVFMTLPAFFAKTAAVYNPCIYICMNKQFRHCMITTLC 1007
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 1008CGKNPFEEEEGASTTASKTEASSVSSSSVSP 1100
>gb|U57537.1|SDU57537 Sargocentron diadema rhodopsin mRNA, complete cds
Length = 1559
Score = 288 bits (738), Expect = 4e-76
Identities = 145/344 (42%), Positives = 209/344 (60%), Gaps = 6/344 (1%)
Frame = +3
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P++ PQY++ A+ + A+M + ++GFP+N M L TL
Sbjct: 69 TEGPFFYIPMVNTTGIVRSPYEYPQYYLVNPAAYAILGAYMFFLIIVGFPVNFMTLYVTL 248
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + I S +GYFV GR C LEGF T+ G++
Sbjct: 249 EHKKLRTPLNYILLNLAVADLFMVIGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGMI 428
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
+ WSLA LA ER++V+CKP NFRF HA+ V TW + + ++PP GWSR+IPEG+
Sbjct: 429 SLWSLAVLAIERWVVVCKPISNFRFGENHAIMGVSLTWGMALACTVPPLVGWSRYIPEGM 608
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F F +PL++I F Y +LL A+K AA QQES TT
Sbjct: 609 QCSCGIDYYTRAEGFNNESFVLYMFFCHFTIPLTIIFFCYGRLLCAVKEAAAAQQESETT 788
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC++PYA+ A ++ ++ +TIP+FF+KS+ IYNP
Sbjct: 789 QRAEREVTRMVIIMVIGFLVCWLPYASVAWFIFTHQGSEFGPLFMTIPAFFAKSSSIYNP 968
Query: 301 IIYCFMNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVSS 342
+IY MNKQF+ C I + CGK E + SS KTE S+ SS
Sbjct: 969 MIYICMNKQFRHCMITTLFCGKNPFEGEEEGASSTKTEASSASS 1100
>gb|U57545.1|STU57545 Sargocentron tiere rhodopsin mRNA, partial cds
Length = 1467
Score = 288 bits (738), Expect = 4e-76
Identities = 140/324 (43%), Positives = 201/324 (61%), Gaps = 1/324 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ AF + A+M + +IGFP+N + L TL +KKLR PLNYIL+N++
Sbjct: 59 PYEYPQYYLVNPAAFAVLGAYMFFLIIIGFPINFLTLYVTLEHKKLRTPLNYILLNLAVA 238
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I +S +GYFV GR C +EGF T+ G+++ WSLA LA ER++V+CKP
Sbjct: 239 DLFMVIGGFTTTMYSSMHGYFVLGRLGCNIEGFFATLGGMISLWSLAVLAIERWVVVCKP 418
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + ++PP GWSR+IPEG+QC+CG D+YT Y +ES
Sbjct: 419 ISNFRFGENHAIMGVSLTWVMALACTVPPLVGWSRYIPEGMQCACGIDYYTRAEGYNNES 598
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F F F+ P+ +I F Y +LL A+K AA QQES TTQ+A +
Sbjct: 599 FVIYMFTFHFLFPMFIIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVIGYL 778
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A ++ ++ + +PSFF+KS+ IYNPIIY MNKQF+ C I +
Sbjct: 779 VCWLPYASVAWFIFTHKGSEFGPLFMAVPSFFAKSSSIYNPIIYICMNKQFRQCMITTLF 958
Query: 319 CGKAMTDESDTCSSQKTEVSTVSS 342
CGK + + SS KTE S+ SS
Sbjct: 959 CGKNPFEGQEEDSSTKTEASSASS 1030
>emb|Z71999.1|CCRHODPSN C.carpio mRNA for rhodopsin
Length = 1630
Score = 288 bits (738), Expect = 4e-76
Identities = 144/331 (43%), Positives = 201/331 (60%), Gaps = 3/331 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++ WA+ AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 138 PYDYPQYYLVAPWAYGCLAAYMFFLIITGFPVNFLTLYVTIEHKKLRTPLNYILLNLAIS 317
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFGR C LEGF T+ G + WSL LAFER++V+CKP
Sbjct: 318 DLFMVFGGFTTTMYTSLHGYFVFGRVGCNLEGFFATLGGEMGLWSLVVLAFERWMVVCKP 497
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V+ TW + + P GWSR+IPEG+QCSCG D+YT Y +ES
Sbjct: 498 VSNFRFGENHAIMGVVFTWFMACTCAEAPLVGWSRYIPEGMQCSCGVDYYTRAPGYNNES 677
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ FI+PL +I F Y L+ +K AAQQQES TTQ+A F
Sbjct: 678 FVIYMFLVHFIIPLIVIFFCYGLLVCTVKDAAAQQQESETTQRAEREVTRMVVIMVIGFL 857
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C++PYA+ A Y+ ++ +T+P+FF+KSA +YNP IY MNKQF+ C I +
Sbjct: 858 ICWIPYASVAWYIFTHQGSEFGPVFMTVPAFFAKSAAVYNPCIYICMNKQFRNCMITTLC 1037
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 1038CGKNPFEEEEGASTTASKTEASSVSSSSVSP 1130
>emb|Y18677.1|SPIY18677 Sardina pilchardus mRNA for opsin
Length = 1056
Score = 288 bits (738), Expect = 4e-76
Identities = 139/325 (42%), Positives = 198/325 (60%), Gaps = 2/325 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+D PQY++ P W + AA+M + L GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYDYPQYYLVPPWGYACLAAYMFLLILTGFPVNFLTLYVTIEHKKLRSPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I S NGYFVFGR C +EGF T+ G + WSL L+ ER+IV+CKP
Sbjct: 247 DLFMVIGGFTTTMWTSLNGYFVFGRMGCNIEGFFATLGGEIALWSLVVLSMERWIVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V +W + ++PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 427 ISNFRFGENHAVMGVAFSWFMAAACAVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F PL++I F Y +L+ +K AAQQQES TTQ+A F
Sbjct: 607 FVIYMFVVHFTCPLTIITFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVIIMFVAFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
C+VPYA+ A Y+ ++ +TIP+FF+KS+ +YNP+IY +NKQF+ C I +
Sbjct: 787 ACWVPYASVAWYIFTHQGSEFGPVFMTIPAFFAKSSAVYNPVIYICLNKQFRHCMITTLC 966
Query: 319 CGK-AMTDESDTCSSQKTEVSTVSS 342
CGK +E + ++ KTE S+V S
Sbjct: 967 CGKNPFEEEEGSTTASKTEASSVCS 1041
>gb|AF055456.1|AF055456 Tursiops truncatus rod opsin mRNA, complete cds
Length = 1047
Score = 288 bits (737), Expect = 5e-76
Identities = 142/338 (42%), Positives = 205/338 (60%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNKTGVVRSPFEYPQYYLAEPWQFSVLAAYMFLLIVLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S + YFVFG C LEGF T+ G + WSL
Sbjct: 205 RTPLNYILLNLAVANLFMVFGGFTTTLYTSLHAYFVFGPTGCNLEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ + TW + + + P GWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGLALTWIMAMACAAAPLVGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT + +ES+ ++F+ F +PL +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 IDYYTSRQEVNNESFVIYMFVVHFTIPLVIIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +TIPSFF+KS+ IYNP+IY
Sbjct: 745 EVTRMVIIMVVAFLICWVPYASVAFYIFTHQGSDFGPIFMTIPSFFAKSSSIYNPVIYIM 924
Query: 306 MNKQFQACIMKMVC--GKAMTDESDTCSSQKTEVSTVS 341
MNKQF+ C++ +C + D+ + ++ KTE S V+
Sbjct: 925 MNKQFRNCMLTTLCCGRNPLGDDEASTTASKTETSQVA 1038
>gb|AF226989.1|AF226989 Takifugu rubripes green opsin mRNA, complete cds
Length = 1623
Score = 288 bits (736), Expect = 6e-76
Identities = 134/322 (41%), Positives = 197/322 (60%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A F + A +M + G P+N + L+ T + KKLRQPLNYILVN++
Sbjct: 137 PFEYPQYYLADPIMFKILALYMFFLICTGTPINGLTLLVTAQNKKLRQPLNYILVNLAVA 316
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
G ++C F ++ NGYF+ G CA+EGF+ T+ G + WSL LA ERY+V+CKP
Sbjct: 317 GLIMCAFGFTITITSAVNGYFILGATACAVEGFMATLGGEIALWSLVVLAVERYVVVCKP 496
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
G+F+F+ HA V TW + + PP FGWSR++PEG+QCSCGPD+YT+ Y +ES
Sbjct: 497 MGSFKFTGTHAAVGVAFTWIMAFACAAPPLFGWSRYLPEGMQCSCGPDYYTLAPGYNNES 676
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
Y ++F F VP+ I F+Y L+ +KA AAQQQES +TQKA F
Sbjct: 677 YVIYMFSCHFFVPVITIFFTYGSLVLTVKAAAAQQQESESTQKAQKEVTRMCILMVFGFL 856
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC 319
+ + PYA F+ ++ N+ + +FF+KS+ +YNP+IY +NKQF+ C++ +
Sbjct: 857 MAWTPYATFSAWIFMNKGAAFHPLTAAVCAFFAKSSALYNPVIYVLLNKQFRNCMLSTIG 1036
Query: 320 GKAMTDESDTCSSQKTEVSTVS 341
D+ + S+ KTEVS+VS
Sbjct: 1037MGGAVDDETSVSASKTEVSSVS 1102
>gb|U57546.1|SXU57546 Sargocentron xantherythrum rhodopsin mRNA, partial cds
Length = 1470
Score = 287 bits (735), Expect = 8e-76
Identities = 143/325 (44%), Positives = 201/325 (61%), Gaps = 2/325 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ AF + A+M + ++GFP+N M L TL +KKLR PLNYIL+N++
Sbjct: 59 PYEYPQYYLVNPAAFAILGAYMFFLIIVGFPVNFMTLYVTLEHKKLRTPLNYILLNLAVA 238
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I S +GYFV GR C LEGF T+ G+++ WSLA LA ER++V+CKP
Sbjct: 239 DLFMVIGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGMISLWSLAVLAIERWVVVCKP 418
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + ++PP GWSR+IPEG+QCSCG D+YT + +E+
Sbjct: 419 ISNFRFGENHAIMGVSLTWGMALACTVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNET 598
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F F VPL++I F Y +LL A+K AA QQES TTQ+A F
Sbjct: 599 FVLYMFCCHFTVPLTIIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIGFL 778
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A ++ ++ +TIP+FF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 779 VCWLPYASVAWFVFTHQGSEFGPLFMTIPAFFAKSSAIYNPMIYICMNKQFRHCMITTLF 958
Query: 319 CGK-AMTDESDTCSSQKTEVSTVSS 342
CGK E + SS KTE S+ SS
Sbjct: 959 CGKNPFEGEEEGASSTKTEASSASS 1033
>gb|U57543.1|SPU57543 Sargocentron punctatissimum rhodopsin mRNA, partial cds
Length = 1470
Score = 287 bits (735), Expect = 8e-76
Identities = 146/344 (42%), Positives = 210/344 (60%), Gaps = 6/344 (1%)
Frame = +2
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P++ PQY++ A+ + A+M + +IGFP+N M L TL
Sbjct: 2 TEGPFFYIPMVNTSGVVRSPYEYPQYYLVNPAAYAILGAYMFFLIIIGFPVNFMTLYVTL 181
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + I +S +GYFV GR C +EGF T+ G++
Sbjct: 182 EHKKLRTPLNYILLNLAVADLFMVIGGFTTTMYSSMHGYFVLGRLGCNMEGFSATLGGMI 361
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
+ WSLA LA ER++V+CKP NFRF HA+ V TW + + ++PP GWSR+IPEG+
Sbjct: 362 SLWSLAVLAIERWVVVCKPISNFRFGENHAIMGVSLTWFMALACTVPPLVGWSRYIPEGM 541
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F F+VPL +I F Y +LL A+K AA QQES TT
Sbjct: 542 QCSCGIDYYTRAEGFNNESFVLYMFFCHFLVPLVIIFFCYGRLLCAVKEAAAAQQESETT 721
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC++PYA+ A ++ ++ +TIP+FF+KS+ IYNP
Sbjct: 722 QRAEREVTRMVIIMVIGFLVCWLPYASVAWFIFTHQGSEFGPLFMTIPAFFAKSSSIYNP 901
Query: 301 IIYCFMNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVSS 342
+IY MNKQF+ C I + CGK E + SS KTE S+ SS
Sbjct: 902 MIYICMNKQFRNCMITTLFCGKNPFEGEEEGASSTKTEASSASS 1033
>gb|U57540.1|NAU57540 Neoniphon argenteus rhodopsin mRNA, partial cds
Length = 1470
Score = 287 bits (735), Expect = 8e-76
Identities = 142/325 (43%), Positives = 203/325 (61%), Gaps = 2/325 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ + A+M + ++GFP+N + L TL +KKLR PLNYIL+N++
Sbjct: 59 PYEYPQYYLVNPAAYAVLGAYMFFLIILGFPINFLTLYVTLEHKKLRTPLNYILLNLAVA 238
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I +S +GYFV GR C LEGF T+ G+++ WSLA LA ER++V+CKP
Sbjct: 239 DLFMVIGGFTTTMYSSMHGYFVLGRLGCNLEGFSATLGGMISLWSLAVLAIERWVVVCKP 418
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TWT+ + ++PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 419 ISNFRFGENHAIMGVSLTWTMALACTVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNES 598
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F F+VPL +I F Y +LL A+K AA QQES TTQ+A +
Sbjct: 599 FVLYMFFCHFMVPLIIIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVIGYL 778
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A ++ ++ +TIP+FF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 779 VCWLPYASVAWFIFTHQGSEFGPLFMTIPAFFAKSSSIYNPVIYICMNKQFRNCMITTLF 958
Query: 319 CGK-AMTDESDTCSSQKTEVSTVSS 342
CGK E + SS KTE S+ SS
Sbjct: 959 CGKNPFEGEEEGASSTKTEASSASS 1033
>gb|U57544.1|SSU57544 Sargocentron spiniferum rhodopsin mRNA, partial cds
Length = 1467
Score = 287 bits (734), Expect = 1e-75
Identities = 138/324 (42%), Positives = 201/324 (61%), Gaps = 1/324 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ + A+M + ++GFP+N + L TL +KKLR PLNYIL+N++
Sbjct: 59 PYEYPQYYLVNPAAYAVLGAYMFFLIIVGFPINFLTLYVTLEHKKLRTPLNYILLNLAVA 238
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I +S +GYFV GR C +EGF T+ G+++ WSLA LA ER++V+CKP
Sbjct: 239 DLFMVIGGFTTTMYSSMHGYFVLGRLGCNIEGFFATLGGMISLWSLAVLAIERWVVVCKP 418
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + ++PP GWSR+IPEG+QC+CG D+YT Y +ES
Sbjct: 419 ISNFRFGENHAIMGVSLTWVMALACTVPPLVGWSRYIPEGMQCACGIDYYTRAEGYNNES 598
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F F F+ P+ +I F Y +LL A+K AA QQES TTQ+A +
Sbjct: 599 FVIYMFTFHFLFPMFIIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVIGYL 778
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A ++ ++ + +PSFF+KS+ IYNPIIY MNKQF+ C I +
Sbjct: 779 VCWLPYASVAWFIFTHKGSEFGPLFMAVPSFFAKSSSIYNPIIYICMNKQFRQCMITTLF 958
Query: 319 CGKAMTDESDTCSSQKTEVSTVSS 342
CGK + + SS KTE S+ SS
Sbjct: 959 CGKNPFEGQEEDSSTKTEASSASS 1030
>emb|AJ249202.1|AJA249202 Anguilla japonica mRNA for fresh water type rod opsin (fwo gene)
Length = 1437
Score = 287 bits (734), Expect = 1e-75
Identities = 139/326 (42%), Positives = 200/326 (60%), Gaps = 3/326 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A WA+ AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 134 PFEYPQYYLAEPWAYSALAAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 313
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFG C +EGF T+ G + W L LA ER++V+CKP
Sbjct: 314 DLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWVVVCKP 493
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + + PP FGWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 494 MSNFRFGENHAIMGVAFTWLMALACAAPPLFGWSRYIPEGMQCSCGIDYYTPNPETYNES 673
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F +PL+++ F Y +L+ +K AAQQQES TTQ+A F
Sbjct: 674 FVIYMFVCHFTIPLTVVSFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFL 853
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC+VPYA+ A Y+ ++ +TIP+FF+KS+ +YNP+IY MNKQF+ C I +
Sbjct: 854 VCWVPYASVAWYIFTHQGSSFGPIFMTIPAFFAKSSALYNPLIYICMNKQFRNCMITTLC 1033
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSS 342
CGK +E + S + KTE S+VSS
Sbjct: 1034CGKNPFEEEEGASTTASKTEASSVSS 1111
>gb|U57542.1|SMU57542 Sargocentron microstoma rhodopsin mRNA, partial cds
Length = 1470
Score = 287 bits (734), Expect = 1e-75
Identities = 142/344 (41%), Positives = 209/344 (60%), Gaps = 6/344 (1%)
Frame = +2
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E ++ +++ G P++ PQY++ A+ + A+M + ++GFP+N M L TL
Sbjct: 2 TEGPYFYIPMVNTTGIVRSPYEYPQYYLVNPAAYAMLGAYMFFLIIVGFPVNFMTLYVTL 181
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + I S +GYFV GR C +EGF T+ G++
Sbjct: 182 EHKKLRTPLNYILLNLAVADLFMVIGGFTTTIYTSMHGYFVLGRLGCNIEGFFATLGGMI 361
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
+ WSLA LA ER++V+CKP NFRF HA+ V TW + + ++PP GWSR+IPEG+
Sbjct: 362 SLWSLAVLAIERWVVVCKPISNFRFGENHAIMGVSLTWAMALACTVPPLVGWSRYIPEGM 541
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F F +PL++I F Y +LL A+K AA QQES TT
Sbjct: 542 QCSCGIDYYTRAEGFNNESFVLYMFFCHFTIPLTIIFFCYGRLLCAVKEAAAAQQESETT 721
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F +C++PYA+ A ++ ++ +TIP+FF+KS+ IYNP
Sbjct: 722 QRAEREVTRMVIIMVIGFLICWLPYASVAWFIFTHQGSEFGPLFMTIPAFFAKSSSIYNP 901
Query: 301 IIYCFMNKQFQAC-IMKMVCGK-AMTDESDTCSSQKTEVSTVSS 342
+IY MNKQF+ C I + CGK E + SS KTE S+ SS
Sbjct: 902 MIYICMNKQFRHCMITTLFCGKNPFEGEEEGASSTKTEASSASS 1033
>gb|U57536.1|NSU57536 Neoniphon sammara rhodopsin mRNA, complete cds
Length = 1568
Score = 287 bits (734), Expect = 1e-75
Identities = 143/325 (44%), Positives = 202/325 (62%), Gaps = 2/325 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ AF + A+M + + GFP+N + L TL +KKLR PLNYIL+N++
Sbjct: 135 PYEYPQYYLVNPAAFAVLGAYMFFLIIFGFPINFLTLYVTLEHKKLRTPLNYILLNLAVA 314
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I +S +GYFV GR C LEGF T+ G+++ WSLA LA ER++V+CKP
Sbjct: 315 DLFMVIGGFTTTMYSSMHGYFVLGRLGCNLEGFSATLGGMISLWSLAVLAIERWVVVCKP 494
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TWT+ + ++PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 495 TSNFRFGENHAIMGVSLTWTMALACTVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNES 674
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F F+VPL +I F Y +LL A+K AA QQES TTQ+A +
Sbjct: 675 FVLYMFFCHFMVPLIIIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVIGYL 854
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A ++ ++ +TIP+FF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 855 VCWLPYASVAWFIFTHQGSEFGPLFMTIPAFFAKSSSIYNPVIYICMNKQFRNCMITTLF 1034
Query: 319 CGK-AMTDESDTCSSQKTEVSTVSS 342
CGK E + SS KTE S+ SS
Sbjct: 1035CGKNPFEGEEEGASSTKTEASSASS 1109
>gb|AF055315.1|AF055315 Globicephala melas rod opsin mRNA, complete cds
Length = 1047
Score = 286 bits (733), Expect = 1e-75
Identities = 141/338 (41%), Positives = 204/338 (59%), Gaps = 5/338 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ F N + V P++ PQY++A W F + AA+M + ++GFP+N + L T+++KKL
Sbjct: 25 FYVPFSNKTGVVRSPFEYPQYYLAEPWQFSVLAAYMFLLIVLGFPINFLTLYVTVQHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYI +N++ + S + YFVFG C LEGF T+ G + WSL
Sbjct: 205 RTPLNYIPLNLAVANLFMVFGGFTTTLYTSLHAYFVFGPTGCNLEGFFATLGGEIALWSL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ERY+V+CKP NFRF HA+ + TW + + + PP GWSR+IPEG+QCSCG
Sbjct: 385 VVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMAMACAAPPLVGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D+YT + +ES+ ++F+ F +PL +I F Y QL+ +K AAQQQESATTQKA
Sbjct: 565 IDYYTSRQEVNNESFVIYMFVVHFTIPLVIIFFCYGQLVFTVKEAAAQQQESATTQKAEK 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F +C+VPYA+ A Y+ ++ +TIPSFF+KS+ IYNP+IY
Sbjct: 745 EVTRMVIIMVVAFLICWVPYASVAFYIFTHQGSDFGPIFMTIPSFFAKSSSIYNPVIYIM 924
Query: 306 MNKQFQACIMKMVC--GKAMTDESDTCSSQKTEVSTVS 341
MNKQ + C++ +C + D+ + ++ KTE S V+
Sbjct: 925 MNKQLRNCMLTTLCCGRNPLGDDEASTTASKTETSQVA 1038
>emb|Y18662.1|DANY18662 Diplodus annularis mRNA for opsin
Length = 1427
Score = 286 bits (733), Expect = 1e-75
Identities = 143/349 (40%), Positives = 211/349 (59%), Gaps = 6/349 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P++ PQY++ A+ A+M + L+GFP+N + L T+
Sbjct: 10 TEGPFFYVPMVNTTGIVRSPYEYPQYYLVNPAAYAALGAYMFLLILVGFPINFLTLYVTI 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + + S +GYFV GR C +EGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVADLFMVLGGFTTTMYTSMHGYFVLGRLGCNIEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TWT+ + + PP GWSR+IPEG+
Sbjct: 370 ALWSLVVLAIERWVVVCKPISNFRFGENHAIMGLAFTWTMAMACAAPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++FI F +PL+++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGIDYYTRAEGFNNESFVIYMFICHFTIPLTVVFFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC++PYA+ A Y+ ++ +TIP+FF+KS+ IYNP
Sbjct: 730 QRAEKEVTRMVIMMVIAFLVCWLPYASVAWYIFTHQGSEFGPVFMTIPAFFAKSSSIYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
+IY +NKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 910 MIYICLNKQFRHCMITTLCCGKNPFEEEEGASTASKTEASSVSSSSVSP 1056
>dbj|AB001606.1|AB001606 Oryzias latipes mRNA for KFH-Rh, complete cds
Length = 1562
Score = 286 bits (733), Expect = 1e-75
Identities = 142/331 (42%), Positives = 201/331 (59%), Gaps = 3/331 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ A+M + L+GFP+N + L TL +KKLR PLNYIL+N++
Sbjct: 116 PYEYPQYYLVSPAAYAALGAYMFFLILVGFPINFLTLYVTLEHKKLRTPLNYILLNLAVA 295
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFV GR C LEGF T+ G + WSL LA ER++V+CKP
Sbjct: 296 DLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEIGLWSLVVLAIERWVVVCKP 475
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ ++ TW + ++PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 476 ISNFRFGENHAIMGLVFTWIMAASCAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNES 655
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F++PL ++ F Y +LL A+K AA QQES TTQ+A F
Sbjct: 656 FVVYMFVCHFLIPLIVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIGFL 835
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A Y+ N+ +TIP+FF+KS+ IYNP IY MNKQF+ C I +
Sbjct: 836 VCWLPYASVAWYIFTNQGSEFGPLFMTIPAFFAKSSSIYNPAIYICMNKQFRNCMITTLC 1015
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 1016CGKNPFEEEEGASTTASKTEASSVSSSSVSP 1108
>gb|U57541.1|NAU57541 Neoniphon aurolineatus rhodopsin mRNA, partial cds
Length = 1467
Score = 286 bits (733), Expect = 1e-75
Identities = 142/324 (43%), Positives = 199/324 (60%), Gaps = 1/324 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ AF A+M + +IGFP+N + L TL +KKLR PLNYIL+N++
Sbjct: 59 PYEYPQYYLVNPAAFAFLGAYMFFLIIIGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVS 238
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I +S +GYFV GR C +EGF T+ G+++ WSLA LA ER++V+CKP
Sbjct: 239 DLFMVIGGFTTTMYSSMHGYFVLGRLGCNIEGFFATLGGMISLWSLAVLAIERWVVVCKP 418
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + + ++PP GWSR+IPEG+QC+CG D+YT Y +ES
Sbjct: 419 ISNFRFGENHAIMGVSMTWLLALSCTVPPLVGWSRYIPEGMQCACGIDYYTRAEGYNNES 598
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F F VPL +I F Y +LL A+K AA QQES TTQ+A F
Sbjct: 599 FVIYMFTCHFSVPLFIIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIGFL 778
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A ++ ++ + IPSFF+KS+ IYNP+IY MNKQF+ C I +
Sbjct: 779 VCWLPYASVAWFIFTHQGSEFGPLFMAIPSFFAKSSSIYNPVIYICMNKQFRQCMITTLF 958
Query: 319 CGKAMTDESDTCSSQKTEVSTVSS 342
CGK + + SS KTE S+ SS
Sbjct: 959 CGKNPFEGEEEGSSTKTEASSASS 1030
>gb|AF201471.1|AF201471 Fugu rubripes retinal rod opsin mRNA, complete cds
Length = 1513
Score = 286 bits (733), Expect = 1e-75
Identities = 145/349 (41%), Positives = 208/349 (59%), Gaps = 6/349 (1%)
Frame = +2
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P+D PQY++ A+ A+M + L+GFP+N + L T+
Sbjct: 59 TEGPFFYVPMVNTTGVVRSPYDYPQYYLVNPAAYAALGAYMFLLILLGFPINFLTLYVTI 238
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C LEGF T+ G +
Sbjct: 239 EHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEI 418
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TW + ++PP GWSR+IPEG+
Sbjct: 419 GLWSLVVLAIERWVVVCKPISNFRFGENHAIMGLAFTWIMASACAVPPLVGWSRYIPEGM 598
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F+ F++PL +I F Y +LL A+K AA QQES TT
Sbjct: 599 QCSCGVDYYTRAEGFNNESFVIYMFVCHFLIPLIIIFFCYGRLLCAVKEAAAAQQESETT 778
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC++PYA A Y+ ++ +TIP+FF+KS+ IYNP
Sbjct: 779 QRAEREVTRMVILMVISFLVCWLPYAGVAWYIFTHQGSEFGPVFMTIPAFFAKSSSIYNP 958
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 959 MIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTSKTEASSVSSSSVSP 1105
>gb|AF109368.1|AF109368 Danio rerio rhodopsin mRNA, complete cds
Length = 1581
Score = 286 bits (732), Expect = 2e-75
Identities = 141/331 (42%), Positives = 200/331 (59%), Gaps = 3/331 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ WA+ L AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 168 PYEYPQYYLVAPWAYGLLAAYMFFLIITGFPVNFLTLYVTIEHKKLRTPLNYILLNLAIA 347
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFGR C LEGF T+ G + WSL LA ER++V+CKP
Sbjct: 348 DLFMVFGGFTTTMYTSLHGYFVFGRLGCNLEGFFATLGGEMGLWSLVVLAIERWMVVCKP 527
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + ++PP GWSR+IPEG+QCSCG D+YT +ES
Sbjct: 528 VSNFRFGENHAIMGVAFTWVMACSCAVPPLVGWSRYIPEGMQCSCGVDYYTRTPGVNNES 707
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL +I F Y +L+ +K AAQQQES TTQ+A F
Sbjct: 708 FVIYMFIVHFFIPLIVIFFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVIIMVIAFL 887
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C++PYA A Y+ ++ +T+P+FF+K++ +YNP IY MNKQF+ C I +
Sbjct: 888 ICWLPYAGVAWYIFTHQGSEFGPVFMTLPAFFAKTSAVYNPCIYICMNKQFRHCMITTLC 1067
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 1068CGKNPFEEEEGASTTASKTEASSVSSSSVSP 1160
>gb|AF331797.1|AF331797 Danio rerio light receptor rod opsin (rho) gene, complete cds
Length = 2221
Score = 286 bits (732), Expect = 2e-75
Identities = 141/331 (42%), Positives = 200/331 (59%), Gaps = 3/331 (0%)
Frame = +2
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ WA+ L AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 761 PYEYPQYYLVAPWAYGLLAAYMFFLIITGFPVNFLTLYVTIEHKKLRTPLNYILLNLAIA 940
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFGR C LEGF T+ G + WSL LA ER++V+CKP
Sbjct: 941 DLFMVFGGFTTTMYTSLHGYFVFGRLGCNLEGFFATLGGEMGLWSLVVLAIERWMVVCKP 1120
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + ++PP GWSR+IPEG+QCSCG D+YT +ES
Sbjct: 1121 VSNFRFGENHAIMGVAFTWVMACSCAVPPLVGWSRYIPEGMQCSCGVDYYTRTPGVNNES 1300
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL +I F Y +L+ +K AAQQQES TTQ+A F
Sbjct: 1301 FVIYMFIVHFFIPLIVIFFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVIIMVIAFL 1480
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C++PYA A Y+ ++ +T+P+FF+K++ +YNP IY MNKQF+ C I +
Sbjct: 1481 ICWLPYAGVAWYIFTHQGSEFGPVFMTLPAFFAKTSAVYNPCIYICMNKQFRHCMITTLC 1660
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 1661 CGKNPFEEEEGASTTASKTEASSVSSSSVSP 1753
>gb|U15762.1|GGU15762 Gallus gallus pinopsin mRNA, complete cds
Length = 1507
Score = 286 bits (731), Expect = 2e-75
Identities = 138/302 (45%), Positives = 199/302 (65%), Gaps = 1/302 (0%)
Frame = +1
Query: 19 GPWDGPQY-HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS 77
GP+DGPQ+ + AP + A MGTV +N +V+V ++ YKKLR PLNYILVN++
Sbjct: 67 GPFDGPQWPYQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLA 246
Query: 78 FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVIC 137
L+ + + NG+FVFGR +C LEGF+ ++ G+V WSLA LA ERY+V+C
Sbjct: 247 VADLLVTLCGSSVSLSNNINGFFVFGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVC 426
Query: 138 KPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS 197
+P G+F+F +HA++ TW + S PP GWS ++PEGL+ SCGP+WYT G+ +
Sbjct: 427 RPLGDFQFQRRHAVSGCAFTWGWALLWSTPPLLGWSSYVPEGLRTSCGPNWYTGGS--NN 600
Query: 198 ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXX 257
SY LF+ CF++PLSLI FSYT LL L+A AAQQ+E+ TTQ+A
Sbjct: 601 NSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEADTTQRAEREVTRMVIVMVMA 780
Query: 258 FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKM 317
F +C++PY+ FA+ + ++ + L ++PS+FSK+A +YNPIIY FMNKQFQ+C+++M
Sbjct: 781 FLLCWLPYSTFALVVATHKGIIIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEM 960
Query: 318 VC 319
+C
Sbjct: 961 LC 966
>dbj|AB022881.1|AB022881 Phelsuma madagascariensis longinsulae dg4 mRNA for pinopsin,
complete cds
Length = 1285
Score = 285 bits (729), Expect = 4e-75
Identities = 142/307 (46%), Positives = 197/307 (63%), Gaps = 2/307 (0%)
Frame = +1
Query: 17 SVGPWDGPQY-HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVN 75
++ P+DGPQ+ H A + AA MG V L N +V+ ++R+K+LR PLNYILVN
Sbjct: 85 TLSPFDGPQWPHRASRRVYTSLAALMGVVVLSASLANGLVIAVSVRFKRLRSPLNYILVN 264
Query: 76 VSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV 135
++ L+ F FV + G+FVFG+ C EGF+ ++ G+V WSLA LAFERY+V
Sbjct: 265 LATADLLVTFFGSIISFVNNAVGFFVFGKTACRFEGFMVSLTGIVGLWSLAILAFERYLV 444
Query: 136 ICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKY 195
ICKP G+F+F +HA+ L TW + ++PP FGWS ++PEGL SCGP+WY GT
Sbjct: 445 ICKPVGDFQFQRRHAVIGCLYTWGWSLIWTVPPLFGWSSYVPEGLGTSCGPNWYMGGT-- 618
Query: 196 RSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXX 255
+ SY LF+ CF +PLS+I FSY LL L+AVAAQQ+E TTQ+A
Sbjct: 619 NNNSYIVALFVTCFALPLSMILFSYANLLLTLRAVAAQQKEQETTQRAEKEVTRMVITMV 798
Query: 256 XXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
F VC++PYA FAM + ++ + L ++PS+FSK+A +YNPIIY FMNKQF++C++
Sbjct: 799 MAFLVCWLPYATFAMVVATTKDLSIQPGLASLPSYFSKTATVYNPIIYVFMNKQFRSCLL 978
Query: 316 KMV-CGK 321
V CG+
Sbjct: 979 NTVSCGR 999
>emb|Y18674.1|LPAY18674 Lipophrys pavo mRNA for opsin
Length = 1427
Score = 285 bits (729), Expect = 4e-75
Identities = 144/350 (41%), Positives = 209/350 (59%), Gaps = 7/350 (2%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E ++ +++ G P++ PQY++ A+ A+M + L+GFP+N + L TL
Sbjct: 10 TEGPYFYIPMVNTTGIVRSPYEYPQYYLVNPAAYAALGAYMFFLILLGFPINFLTLYVTL 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C LEGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TW + ++PP GWSR+IPEG+
Sbjct: 370 GLWSLVVLAIERWVVVCKPISNFRFGENHAIMGLAFTWIMACACAVPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F F +PL++I F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGVDYYTRAEGFNNESFVVYMFTCHFCIPLTIIGFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC++PYA+ A Y+ +N+ +TIP+FF+KS+ +YNP
Sbjct: 730 QRAEREVTRMVILMVVGFLVCWLPYASVAWYIFSNQGSQFGPLFMTIPAFFAKSSSVYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 910 MIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTASKTEASSVSSSSVSP 1059
>emb|AJ293018.1|TNI293018 Tetraodon nigroviridis rhod gene for rhodopsin
Length = 1062
Score = 284 bits (727), Expect = 7e-75
Identities = 142/349 (40%), Positives = 209/349 (59%), Gaps = 6/349 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P+D PQY++ A+ A+M + L+GFP+N + L T+
Sbjct: 10 TEGPFFYVPMLNTTGIVRSPYDYPQYYLVNPAAYAALGAYMFLLILLGFPINFLTLYVTI 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C LEGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVANLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TW + ++PP GWSR+IPEG+
Sbjct: 370 GLWSLVVLAIERWMVVCKPISNFRFGENHAIMGLAFTWIMACACAVPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++FI F++P++++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGVDYYTRAEGFNNESFVVYMFICHFLIPMAVVFFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F +C++PYA A ++ ++ +TIP+FF+KS+ IYNP
Sbjct: 730 QRAEREVTRMVVIMVVAFLICWLPYAGVAWWIFTHQGSEFGPVFMTIPAFFAKSSSIYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 910 LIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTSKTEASSVSSSSVSP 1056
>emb|Y11147.1|PROPSIN P.reticulata mRNA for opsin
Length = 1411
Score = 284 bits (727), Expect = 7e-75
Identities = 146/338 (43%), Positives = 207/338 (61%), Gaps = 10/338 (2%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS-- 77
P++ PQY++ A+ A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYEYPQYYLVSPAAYACLGAYMFFLILVGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 246
Query: 78 -----FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFER 132
FGGF I++ S +GYFV GR C LEG+ T+ G + WSL LA ER
Sbjct: 247 DLFMVFGGFTTTIYT-------SMHGYFVLGRLGCNLEGYFATLGGEIGLWSLVVLAVER 405
Query: 133 YIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVG 192
++V+CKP NFRFS HA+ ++ TW + + PP GWSR+IPEG+QCSCG D+YT
Sbjct: 406 WLVVCKPISNFRFSENHAIMGLVFTWIMANSCAAPPLLGWSRYIPEGMQCSCGVDYYTRA 585
Query: 193 TKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXX 252
+ +ES+ ++FI F +PL ++ F Y +LL A+K AA QQES TTQ+A
Sbjct: 586 EGFNNESFVIYMFICHFCIPLIVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVV 765
Query: 253 XXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQA 312
F VC++PYA+ A Y+ ++ +T+P+FF+KSA IYNP+IY MNKQF+
Sbjct: 766 IMVIGFLVCWIPYASVAWYIFTHQGSEFGPLFMTVPAFFAKSASIYNPLIYICMNKQFRH 945
Query: 313 C-IMKMVCGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 946 CMITTLCCGKNPFEEEEGASTTASKTEASSVSSSSVSP 1059
>gb|AF201470.1|AF201470 Salmo salar retinal rod opsin mRNA, complete cds
Length = 1551
Score = 284 bits (727), Expect = 7e-75
Identities = 146/331 (44%), Positives = 199/331 (60%), Gaps = 3/331 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ L AA+M + L GFP+N + L T+ +KKLR LNYIL+N++
Sbjct: 72 PYEYPQYYLVSPAAYSLMAAYMFFLILTGFPINFLTLYVTIEHKKLRTALNYILLNLAVA 251
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I S +GYFVFGR C +E F T G + WSL LA ER++V+CKP
Sbjct: 252 DLFMVIGGFTTTMYTSMHGYFVFGRTGCNIEAFFATHGGEIGLWSLVVLAIERWLVVCKP 431
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRFS HA+ V TW + S+PP GWSR+IPEG+QCSCG D+YT +ES
Sbjct: 432 ISNFRFSETHAIIGVAFTWVMASACSVPPLLGWSRYIPEGMQCSCGIDYYTRAPGVNNES 611
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL +I F Y LL A+KA AA QQES TTQ+A +
Sbjct: 612 FVVYMFIVHFSIPLFIITFCYGNLLCAVKAAAAAQQESETTQRAEKEVTRMVIMMVVSYL 791
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
V +VPYA+ A Y+ N+ +TIP+FF+KS+ +YNP+IY MNKQF+ C I +
Sbjct: 792 VSWVPYASVAWYIFCNQGSEFGPVFMTIPAFFAKSSALYNPLIYVLMNKQFRHCMITTLC 971
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 972 CGKNPFEEEEGASTTASKTEASSVSSSSVAP 1064
>emb|Y18669.1|CLAY18669 Chelon labrosus mRNA for opsin
Length = 1062
Score = 284 bits (726), Expect = 9e-75
Identities = 142/349 (40%), Positives = 208/349 (58%), Gaps = 6/349 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E ++ +++ G P++ PQY++ A+ A+M + L+GFP+N + L TL
Sbjct: 10 TEGPYFYIPMVNTTGIVRSPYEYPQYYLVNPAAYAALGAYMFLLILVGFPVNFLTLYVTL 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + + S +GYFV GR C +EGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVADLFMVLGGFTTTMYTSMHGYFVLGRLGCNVEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRFS HA+ + TW + ++PP GWSR+IPEG+
Sbjct: 370 ALWSLVVLAIERWVVVCKPISNFRFSEDHAIMGLAFTWVMASACAVPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F+ F++PL ++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGIDYYTRAEGFNNESFVIYMFVCHFLIPLVVVFFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC+ PYA A Y+ ++ +T P+FF+KS+ IYNP
Sbjct: 730 QRAEREVSRMVVIMVVAFLVCWCPYAGVAWYIFTHQGSEFGPLFMTFPAFFAKSSSIYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 910 MIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTSKTEASSVSSSSVSP 1056
>emb|Y18672.1|SVUY18672 Solea vulgaris mRNA for opsin
Length = 1425
Score = 284 bits (726), Expect = 9e-75
Identities = 139/330 (42%), Positives = 200/330 (60%), Gaps = 2/330 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYEYPQYYLVNPAAYAALCAYMFLLILLGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFV GR C LEGF T+ G + WSL LA ER++V+CKP
Sbjct: 247 NLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEIGLWSLVVLAVERWMVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF+ HA+ + TW ++PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 427 ISNFRFTENHAIMGLGFTWFAASACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F++PL ++ F Y +LL A+K AA QQES TTQ+A F
Sbjct: 607 FVVYMFVCHFLIPLIVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIAFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+ PYA A Y+ +N+ +TIP+FF+KS+ IYNP+IY FMNKQF+ C I +
Sbjct: 787 ICWCPYAGVAWYIFSNQGSEFGPLFMTIPAFFAKSSSIYNPLIYIFMNKQFRHCMITTLC 966
Query: 319 CGK-AMTDESDTCSSQKTEVSTVSSTQVGP 347
CGK +E + ++ KTE S+ SS+ V P
Sbjct: 967 CGKNPFEEEEGSTTTSKTEASSASSSSVSP 1056
>gb|AF315354.1|AF315354 Astatotilapia burtoni rhodopsin mRNA, complete cds
Length = 1506
Score = 283 bits (724), Expect = 2e-74
Identities = 148/357 (41%), Positives = 212/357 (58%), Gaps = 14/357 (3%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P++ PQ+++ A+ A+M + L+GFP+N + L T+
Sbjct: 67 TEGPFFYVPMVNTTGIVRSPYEYPQHYLVSPAAYAALGAYMFFLILVGFPINFLTLYVTI 246
Query: 61 RYKKLRQPLNYILVNVS-------FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFL 113
+KKLR PLNYIL+N++ FGGF +++ S +GYFV GR C LEGF
Sbjct: 247 EHKKLRTPLNYILLNLAVADLFMVFGGFTTTVYT-------SMHGYFVLGRLGCNLEGFF 405
Query: 114 GTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWS 173
T+ G + WSL LA ER++V+CKP NFRF HA+ + TW + + PP GWS
Sbjct: 406 ATLGGEIGLWSLVVLAVERWLVVCKPISNFRFGENHAIMGLAFTWVAALSCAAPPLVGWS 585
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQ 233
R+IPEG+QCSCG D+YT + +ES+ ++FI F +PL+++ F Y +LL A+K AA
Sbjct: 586 RYIPEGMQCSCGVDYYTRAEGFNNESFVIYMFICHFTIPLTVVFFCYGRLLCAVKEAAAA 765
Query: 234 QQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSK 293
QQES TTQ+A F VC++PYA A Y+ ++ +T+P+FF+K
Sbjct: 766 QQESETTQRAEREVTRMVIMMVISFLVCWLPYAGVAWYIFTHQGSEFGPVFMTLPAFFAK 945
Query: 294 SACIYNPIIYCFMNKQFQAC-IMKMVCGKAMTDESDTCSS--QKTEVSTVSSTQVGP 347
A IYNPIIY MNKQF+ C I + CGK +E + SS KTE S+VSS+ V P
Sbjct: 946 GASIYNPIIYICMNKQFRHCMITTLCCGKNPFEEEEGASSTASKTEASSVSSSSVSP 1116
>emb|Y18666.1|MSUY18666 Mullus surmuletus mRNA for opsin
Length = 1423
Score = 283 bits (724), Expect = 2e-74
Identities = 143/350 (40%), Positives = 208/350 (58%), Gaps = 7/350 (2%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E ++ +++ G P+D PQY++ A+ A+M + L+GFP+N + L T+
Sbjct: 10 TEGPYFYIPMVNTTGIVRSPYDYPQYYLVNPAAYAALGAYMFFLILVGFPINFLTLYVTI 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C LEGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVANLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TW + ++PP GWSR+IPEG+
Sbjct: 370 ALWSLVVLAVERWMVVCKPISNFRFGENHAIMGLAMTWLMASACAVPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F F++PL ++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGVDYYTRAEGFNNESFVVYMFCCHFMIPLIIVFFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC++PYA+ A ++ ++ +TIP+FF+KS+ IYNP
Sbjct: 730 QRAEREVTRMVVIMVIAFLVCWLPYASVAWWIFTHQGSEFGPVFMTIPAFFAKSSSIYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCSS--QKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + SS KTE S+VSS+ V P
Sbjct: 910 MIYICMNKQFRNCMITTLCCGKNPFEEEEGASSTASKTEASSVSSSSVSP 1059
>emb|Y11146.1|GAOPSIN G.affinis mRNA for opsin
Length = 1408
Score = 283 bits (723), Expect = 2e-74
Identities = 146/338 (43%), Positives = 207/338 (61%), Gaps = 10/338 (2%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS-- 77
P++ PQY++ A+ A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYEYPQYYLVSPAAYACLGAYMFFLILVGFPVNFLTLYVTIEHKKLRTPLNYILLNLAVA 246
Query: 78 -----FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFER 132
FGGF I++ S +GYFV GR C LEG+ T+ G + WSL LA ER
Sbjct: 247 DLFMVFGGFTTTIYT-------SMHGYFVLGRLGCNLEGYFATLGGEIGLWSLVVLAVER 405
Query: 133 YIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVG 192
++V+CKP NFRF+ HA+ ++ TW + + PP GWSR+IPEG+QCSCG D+YT
Sbjct: 406 WLVVCKPISNFRFTENHAIMGLVFTWIMANACAAPPLLGWSRYIPEGMQCSCGVDYYTRA 585
Query: 193 TKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXX 252
+ +ES+ ++FI F +PL ++ F Y +LL A+K AA QQES TTQ+A
Sbjct: 586 EGFNNESFVIYMFICHFCIPLVVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVV 765
Query: 253 XXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQA 312
F VC+ PYA+ A Y+ +N+ +TIP+FF+KS+ IYNP+IY MNKQF+
Sbjct: 766 ILVIGFLVCWTPYASVAWYIFSNQGSEFGPLFMTIPAFFAKSSSIYNPMIYICMNKQFRH 945
Query: 313 C-IMKMVCGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 946 CMITTLCCGKNPFEEEEGASTTASKTEASSVSSSSVSP 1059
>gb|AF201472.1|AF201472 Fugu rubripes brain rod-like opsin mRNA, complete cds
Length = 1906
Score = 283 bits (723), Expect = 2e-74
Identities = 138/330 (41%), Positives = 204/330 (61%), Gaps = 2/330 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + L AA+M + + FP+N + L T+++KKLR PLNY+L+N++
Sbjct: 189 PFEYPQYYLAEPWKYSLVAAYMLFLIITAFPVNFLTLFVTVKHKKLRTPLNYVLLNLAVA 368
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ I + + YFV G C +EGF T+ G + WSL LA ERYIV+CKP
Sbjct: 369 DLFMVIGGFTVTLYTALHAYFVLGVTGCNIEGFFATLGGEIALWSLVVLAVERYIVVCKP 548
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF KHA+ ++ TW + + + PP GWSR+IPEG+QCSCG D+YT + + S
Sbjct: 549 MTNFRFGEKHAIAGLVFTWIMALTCATPPLLGWSRYIPEGMQCSCGIDYYTPKPEINNTS 728
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL++I F Y++LL ++A AA QQES TTQ+A F
Sbjct: 729 FVIYMFILHFSIPLAIIFFCYSRLLCTVRAAAALQQESETTQRAEKEVTRMVIVMVISFL 908
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
VC+VPYA+ A Y+ N+ +T P+FF+KSA +YNP+IY +N+QF+ C++ V
Sbjct: 909 VCWVPYASVAWYIFANQGTEFGPVFMTAPAFFAKSAALYNPVIYILLNRQFRNCMITTVC 1088
Query: 319 CGKAMTDESDTCSS-QKTEVSTVSSTQVGP 347
CGK + D ++ KT+ S+VSS+QV P
Sbjct: 1089CGKNPFGDDDAATTVSKTQSSSVSSSQVAP 1178
>emb|Y18673.1|DLAY18673 Dicentrarchus labrax mRNA for opsin
Length = 1428
Score = 282 bits (722), Expect = 3e-74
Identities = 139/349 (39%), Positives = 207/349 (58%), Gaps = 6/349 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P+D PQY++ A+ A+M + L+GFP+N + L T+
Sbjct: 10 TEGPFFYVPMVNTTGIVRSPYDYPQYYLVSPAAYAALGAYMFLLILLGFPINFLTLYVTI 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C +EGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNMEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TW + ++PP GWSR+IPEG+
Sbjct: 370 GLWSLVVLAVERWLVVCKPISNFRFGENHAIMGLAFTWVMACSCAVPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F FI+P+ ++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGVDYYTRAEGFNNESFVIYMFACHFIIPMCVVFFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F +C+ PYA+ A Y+ ++ +T+P+FF+K++ +YNP
Sbjct: 730 QRAEKEVTRMVVIMGIAFLICWCPYASVAWYIFTHQGSEFGPVFMTLPAFFAKTSSVYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 910 LIYILMNKQFRHCMITTLCCGKNPFEEEEGASTASKTEASSVSSSSVSP 1056
>emb|Y18676.1|ABOY18676 Atherina boyeri mRNA for opsin
Length = 1065
Score = 282 bits (722), Expect = 3e-74
Identities = 146/338 (43%), Positives = 206/338 (60%), Gaps = 10/338 (2%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS-- 77
P++ PQY++ A+ + A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYEYPQYYLVNPAAYAVLGAYMFFLILVGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 246
Query: 78 -----FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFER 132
FGGF I++ S +GYFV GR C +EGF T+ G + WSL LA ER
Sbjct: 247 DLFMVFGGFTTTIYT-------SMHGYFVLGRLGCNVEGFSATLGGEIALWSLVVLAIER 405
Query: 133 YIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVG 192
++V+CKP NFRF HA+ V TW + ++PP FGWSR+IPEG+QCSCG D+YT
Sbjct: 406 WVVVCKPISNFRFGENHAIMGVAFTWFMAAACAVPPLFGWSRYIPEGMQCSCGIDYYTRA 585
Query: 193 TKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXX 252
+ +ES+ ++F F +PL ++ F Y +L+ A+K AA QQES TTQ+A
Sbjct: 586 EGFNNESFVIYMFTCHFCIPLMVVFFCYGRLVCAVKEAAAAQQESETTQRAEREVTRMVI 765
Query: 253 XXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQA 312
F V +VPYA+ A Y+ ++ +TIP+FF+KS+ IYNP+IY MNKQF+
Sbjct: 766 IMVVSFLVSWVPYASVAWYIFTHQGSEFGPLFMTIPAFFAKSSSIYNPMIYICMNKQFRH 945
Query: 313 C-IMKMVCGKAMTDESDTCSS--QKTEVSTVSSTQVGP 347
C I + CGK +E + SS KTE S+VSS+ V P
Sbjct: 946 CMITTLCCGKNPFEEEEGASSTASKTEASSVSSSSVSP 1059
>emb|Y18670.1|LSAY18670 Liza saliens mRNA for opsin
Length = 1062
Score = 282 bits (721), Expect = 4e-74
Identities = 140/349 (40%), Positives = 206/349 (58%), Gaps = 6/349 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E ++ +++ G P++ PQY++ A+ A+M + L+GFP+N + L T+
Sbjct: 10 TEGPYFYIPMVNTTGIVRSPYEYPQYYLVNPAAYAALGAYMFLLILVGFPINFLTLYVTI 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C LEGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVANLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TW + ++PP GWSR+IPEG+
Sbjct: 370 ALWSLVVLAIERWMVVCKPISNFRFGEDHAIMGLAFTWVMAAACAVPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F+ F++PL ++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGIDYYTRAEGFNNESFVIYMFVCHFLIPLVVVFFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F +C+ PYA A Y+ ++ +T P+FF+KS+ IYNP
Sbjct: 730 QRAEREVSRMVVIMVVAFLICWCPYAGVAWYIFTHQGSEFGPLFMTFPAFFAKSSSIYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 910 MIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTSKTEASSVSSSSVSP 1056
>emb|Y18671.1|LAUY18671 Liza aurata mRNA for opsin
Length = 1434
Score = 282 bits (721), Expect = 4e-74
Identities = 142/349 (40%), Positives = 206/349 (58%), Gaps = 6/349 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E ++ +++ G P++ PQY++ A+ A+M + LIGFP+N + L T+
Sbjct: 10 TEGPYFYIPMVNTTGIVRSPYEYPQYYLVNPAAYAALGAYMFLLILIGFPVNFLTLYVTI 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C LEGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TW + ++PP GWSR+IPEG+
Sbjct: 370 ALWSLVVLAVERWMVVCKPISNFRFGEDHAIMGLAFTWVMAAACAVPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F+ F++PL ++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGIDYYTRAEGFNNESFVIYMFVCHFLIPLVVVFFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC+ PYA A Y+ ++ +T P+FF+KS+ IYNP
Sbjct: 730 QRAEREVSRMVVIMVVAFLVCWCPYAGVAWYIFTHQGSEFGPLFMTFPAFFAKSSSIYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 910 MIYICMNKQFRQCMITTLCCGKNPFEEEEGASTTSKTEASSVSSSSVSP 1056
>gb|AF201469.1|AF201469 Salmo salar pineal gland rod-like opsin mRNA, complete cds
Length = 1977
Score = 281 bits (720), Expect = 5e-74
Identities = 137/330 (41%), Positives = 204/330 (61%), Gaps = 2/330 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++A W + L AA+M + + FP+N + L T+++KKLR PLNYIL+N++
Sbjct: 72 PFEHPQYYLAAPWKYSLLAAYMIFLIITAFPVNFLTLYVTVQHKKLRTPLNYILLNLAVA 251
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ + + GYF G C +EGF T+ G + WSL LA ERYIV+CKP
Sbjct: 252 DLFMVVGGFTVTLATALQGYFFLGVTGCNVEGFFATMGGEIALWSLVVLAIERYIVVCKP 431
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF+ +HA+ V TW + + ++PP GWSR+IPEG+QCSCG D+YT + + S
Sbjct: 432 MTNFRFNERHAIVGVAFTWIMSLTCALPPLCGWSRYIPEGMQCSCGIDYYTPTPELGNTS 611
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F F +PL +I F Y +LL ++A AA QQES TTQ+A +
Sbjct: 612 FVIYMFTLHFSIPLVIIGFCYGRLLCTVRAAAALQQESETTQRAEKEVTRMVIVMVISYL 791
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
VC++PYA A Y+ N+ ++TIP+FF+KSA +YNPIIY +N+QF+ C++ +V
Sbjct: 792 VCWMPYATVAWYIFANQGTNFGPVMMTIPAFFAKSAALYNPIIYILLNRQFRNCMLTIVC 971
Query: 319 CGKAMTDESDT-CSSQKTEVSTVSSTQVGP 347
CGK E +T +S KT+ S++S++QV P
Sbjct: 972 CGKNPFGEEETSTASSKTQASSISASQVAP 1061
>emb|Y18668.1|MCEY18668 Mugil cephalus mRNA for opsin
Length = 1414
Score = 281 bits (719), Expect = 6e-74
Identities = 140/349 (40%), Positives = 206/349 (58%), Gaps = 6/349 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E ++ +++ G P++ PQY++ A+ A+M + L+GFP+N + L T+
Sbjct: 10 TEGPYFYIPMVNTTGIVRSPYEYPQYYLVNPAAYAALGAYMFLLILLGFPINFLTLYVTI 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C LEGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVANLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TW + ++PP GWSR+IPEG+
Sbjct: 370 ALWSLVVLAVERWMVVCKPISNFRFGENHAIMGLAFTWVMASACAVPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++F+ F++PL ++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGIDYYTRAEGFNNESFVIYMFVCHFLIPLVVVFFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F +C+ PYA A Y+ ++ +T P+FF+KS+ IYNP
Sbjct: 730 QRAEREVSRMVVIMVVAFLICWCPYAGVAWYIFTHQGSEFGPLFMTFPAFFAKSSSIYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 910 MIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTSKTEASSVSSSSVSP 1056
>emb|Y18665.1|SAUY18665 Sparus aurata mRNA for opsin
Length = 1521
Score = 280 bits (717), Expect = 1e-73
Identities = 141/349 (40%), Positives = 208/349 (59%), Gaps = 6/349 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P++ PQY++ A+ A+M + L+GFP+N + L T+
Sbjct: 10 TEGPFFYVPMVNTSGIVRSPYEYPQYYLVNPAAYAALGAYMFLLILVGFPINFLTLYVTI 189
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR PLNYIL+N++ + S +GYFV GR C +EGF T+ G +
Sbjct: 190 EHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNIEGFFATLGGEI 369
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF HA+ + TW + + + PP GWSR+IPEG+
Sbjct: 370 ALWSLVVLAIERWVVVCKPISNFRFGENHAIMGLAFTWIMAMACAAPPLVGWSRYIPEGM 549
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++FI F +PL+++ F Y +LL A+K AA QQES TT
Sbjct: 550 QCSCGIDYYTRAEGFNNESFVIYMFICHFSIPLTIVFFCYGRLLCAVKEAAAAQQESETT 729
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F VC++PYA A ++ ++ +TIP+FF+KS+ IYNP
Sbjct: 730 QRAEREVTRMVIMMVIAFLVCWLPYAGVAWWIFTHQGSEFGPVFMTIPAFFAKSSSIYNP 909
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
+IY +NKQF+ C I + CGK +E + S + KTE S+VSS+ V P
Sbjct: 910 MIYICLNKQFRHCMITTLCCGKNPFEEEEGASTASKTEASSVSSSSVSP 1056
>gb|L78007.1|ANGFROD Anguilla anguilla freshwater rhodopsin mRNA, partial cds
Length = 1056
Score = 280 bits (716), Expect = 1e-73
Identities = 142/340 (41%), Positives = 203/340 (58%), Gaps = 6/340 (1%)
Frame = +1
Query: 9 FYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKL 65
FY+ N++ V P++ PQY++A WA+ AA+M + + GFP+N + L T+ +KKL
Sbjct: 25 FYVPMSNVTGVVRSPFEYPQYYLAEPWAYSALAAYMFFLIIAGFPINFLTLYVTIEHKKL 204
Query: 66 RQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSL 125
R PLNYIL+N++ + S +GYFVFG C +EGF T+ G + W L
Sbjct: 205 RTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCL 384
Query: 126 AFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCG 185
LA ER++V+CKP NFRF HA+ V TW + + + PP FGWSR+IPEG+QCSCG
Sbjct: 385 VVLAVERWMVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLFGWSRYIPEGMQCSCG 564
Query: 186 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXX 245
D Y + +ES+ ++FI F +PL++I F Y +L+ +K AQQQES TTQ+A
Sbjct: 565 MDHYAPNPETYNESFVIYMFICHFTIPLTVISFCYGRLVCTVKEATAQQQESETTQRAER 744
Query: 246 XXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCF 305
F VC+VPYA+ A Y+ ++ +TIP+FF+KS+ +YNP+IY
Sbjct: 745 EVTRMVIIMVISFLVCWVPYASVAWYIFTHQGSSFGPIFMTIPAFFAKSSSLYNPLIYIC 924
Query: 306 MNKQFQAC-IMKMVCGKAMTDESDTCS--SQKTEVSTVSS 342
MNKQ + C I + CGK +E + S + KTE S+VSS
Sbjct: 925 MNKQSRNCMITTLCCGKNPFEEEEGASTTASKTEASSVSS 1044
>emb|Y18663.1|DVUY18663 Diplodus vulgaris mRNA for opsin
Length = 1427
Score = 280 bits (715), Expect = 2e-73
Identities = 138/330 (41%), Positives = 200/330 (59%), Gaps = 2/330 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYEYPQYYLVNPAAYAALGAYMFLLILVGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFV GR C +EGF T+ G + WSL LA ER++V+CKP
Sbjct: 247 DLFMVFGGFTTTMYTSMHGYFVLGRLGCNIEGFFATLGGEIALWSLVVLAIERWVVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ + TW + + + PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 427 ISNFRFGENHAIMGLAFTWLMALACAAPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL ++ F Y +LL A+K AA QQES TTQ+A F
Sbjct: 607 FVIYMFICHFSIPLLVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVIMMVIAFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A ++ ++ +TIP+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 787 VCWLPYASVAWWIFTHQGSDFGPVFMTIPAFFAKSSSIYNPMIYICLNKQFRHCMITTLC 966
Query: 319 CGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 967 CGKNPFEEEEGASTASKTEASSVSSSSVSP 1056
>emb|Y18664.1|SSAY18664 Sarpa salpa mRNA for opsin
Length = 1431
Score = 280 bits (715), Expect = 2e-73
Identities = 138/330 (41%), Positives = 200/330 (59%), Gaps = 2/330 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYEYPQYYLVNPAAYARLGAYMFLLILVGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFV GR C +EGF T+ G + WSL LA ER++V+CKP
Sbjct: 247 DLFMVFGGFTTTMYTSMHGYFVLGRLGCNIEGFFATLGGEIALWSLVVLAIERWVVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ + TW + + + PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 427 ISNFRFGENHAIMGLAFTWLMALACAAPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F VPL ++ F Y +LL A+K AA QQES TTQ+A F
Sbjct: 607 FVIYMFVCHFTVPLMVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVIMMVVAFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
VC++PYA+ A ++ ++ +TIP+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 787 VCWLPYASVAWWIFTHQGSEFGPVFMTIPAFFAKSSSIYNPMIYICLNKQFRHCMITTLC 966
Query: 319 CGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 967 CGKNPFEEEEGASTASKTEASSVSSSSVSP 1056
>gb|AF369054.1|AF369054 Protopterus sp. IMCB-2001 rhodopsin gene, partial cds
Length = 861
Score = 279 bits (714), Expect = 2e-73
Identities = 130/287 (45%), Positives = 181/287 (62%)
Frame = +1
Query: 28 IAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS 87
+A W + AA+M + L+GFP+N M L T+++KKLR PLNYIL+N++ GG +
Sbjct: 1 LAEPWKYSALAAYMFFLILVGFPINFMTLYVTIQHKKLRTPLNYILLNLAIGGLFMVFGG 180
Query: 88 VFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSS 147
S NGYFVFG C +EGF T G++ WSL LA ERYIV+CKP NFRF
Sbjct: 181 FTTTMYTSMNGYFVFGVTGCNIEGFFATFGGILGLWSLVVLAIERYIVVCKPMSNFRFGE 360
Query: 148 KHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIF 207
HA+ ++ TW + + + PP FGWSR+IPEG+QCSCG D+YT+ + +ES+ ++F+
Sbjct: 361 NHAIMGIVFTWIMTLACAAPPLFGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVV 540
Query: 208 CFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAA 267
F++PL +I F Y +L+ +K AAQQQESATTQKA F VC++PYA
Sbjct: 541 HFLIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVYIMVISFLVCWLPYAF 720
Query: 268 FAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
A Y+ ++ +T P+FF+K+A YNP+IY FMNKQF+ C+
Sbjct: 721 VAFYIFTHKGSDFGPVFMTAPAFFAKTAAFYNPVIYIFMNKQFRNCM 861
>emb|Y18667.1|LMOY18667 Lithognathus mormyrus mRNA for opsin
Length = 1524
Score = 279 bits (714), Expect = 2e-73
Identities = 136/330 (41%), Positives = 199/330 (60%), Gaps = 2/330 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 67 PYEYPQYYLVNPAAYAALGAYMFLLILVGFPINFLTLYVTIEHKKLRTPLNYILLNLAVA 246
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFV GR C +EGF T+ G + WSL LA ER++V+CKP
Sbjct: 247 DLFMVFGGFTTTMYTSMHGYFVLGRLGCNIEGFFATLGGEIALWSLVVLAIERWVVVCKP 426
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ + TW + + + PP GWSR+IPEG+QCSCG D+YT + +ES
Sbjct: 427 ISNFRFGENHAIMGLAFTWLMAMACAAPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNES 606
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++F+ F++PL ++ F Y +LL A+K AA QQES TTQ+A F
Sbjct: 607 FVIYMFVCHFLIPLMVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIAFL 786
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C+ PYA A ++ ++ +TIP+FF+KS+ IYNP+IY +NKQF+ C I +
Sbjct: 787 ICWCPYAGVAWWIFTHQGSDFGPVFMTIPAFFAKSSSIYNPMIYICLNKQFRHCMITTLC 966
Query: 319 CGKAMTDESDTCS-SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 967 CGKNPFEEEEGASTASKTEASSVSSSSVSP 1056
>dbj|AB046548.1|AB046548 Callithrix jacchus mRNA for P539 cone opsin, complete cds
Length = 1095
Score = 279 bits (713), Expect = 3e-73
Identities = 140/339 (41%), Positives = 209/339 (61%), Gaps = 1/339 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ +++ N +S GP++GP YHIAP W ++L + +M V + N +VL AT+++K
Sbjct: 67 TQSSIFIYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMLFVVVASVFTNGLVLAATMKFK 246
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V GYFV G +C LEG+ ++ G+ W
Sbjct: 247 KLRHPLNWILVNLAVADLAETVIASTISVVNQIYGYFVLGHPMCVLEGYTVSLCGITGLW 426
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ S
Sbjct: 427 SLAIISWERWLVVCKPFGNVRFDAKLAIVGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTS 606
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ + +SY L I C I+PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 607 CGPDVFSGSSYPGVQSYMIVLMITCCILPLSIIVLCYLQVWLAIRAVAKQQKESESTQKA 786
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+CVC+ PYA FA + N + + +P++F+KSA IYNPIIY
Sbjct: 787 EKEVTRMVVVMIVAYCVCWGPYAFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPIIY 966
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
FMN+QF+ CI+++ GK + D S+ S+ KTEVS+VSS
Sbjct: 967 VFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSVSS 1080
>gb|M92036.1|GECP521A Gecko gecko green sensitive visual pigment (P521) mRNA, complete
cds
Length = 2118
Score = 278 bits (712), Expect = 4e-73
Identities = 139/330 (42%), Positives = 205/330 (62%), Gaps = 1/330 (0%)
Frame = +1
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W + L + FM V + N +VLVAT ++KKLR PLN+ILVN++F
Sbjct: 175 GPFEGPNYHIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAF 354
Query: 79 GGFL-LCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVIC 137
+ + S VF GYF+ G +C +EG++ + G+ WSLA +++ER+ V+C
Sbjct: 355 VDLVETLVASTISVF-NQIFGYFILGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVC 531
Query: 138 KPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS 197
KPFGN +F SK A+ ++ +W G S PP FGWSR+ P GL+ SCGPD ++ +
Sbjct: 532 KPFGNIKFDSKLAIIGIVFSWVWAWGWSAPPIFGWSRYWPHGLKTSCGPDVFSGSVELGC 711
Query: 198 ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXX 257
+S+ L I C +PL +I Y Q+ A++AVAAQQ+ES +TQKA
Sbjct: 712 QSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESESTQKAEREVSRMVVVMIVA 891
Query: 258 FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKM 317
FC+C+ PYA+F + N + +P++F+KSA IYNP+IY FMN+QF+ CIM++
Sbjct: 892 FCICWGPYASFVSFAAANPGYAFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQL 1071
Query: 318 VCGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
GK + D S+ ++ +TEVS+VS++ V P
Sbjct: 1072F-GKKVDDGSEASTTSRTEVSSVSNSSVAP 1158
>gb|AF074043.1|AF074043 Phelsuma madagascariensis longintinue opsin visual pigment (dg1)
mRNA, complete cds
Length = 2188
Score = 277 bits (709), Expect = 9e-73
Identities = 135/329 (41%), Positives = 201/329 (61%)
Frame = +1
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP+DGP YHIAP W + + +M V + N +VLVAT+++KKLR PLN+ILVN++F
Sbjct: 217 GPFDGPNYHIAPRWVYNFTSFWMVIVVIASTFTNGLVLVATVKFKKLRHPLNWILVNLAF 396
Query: 79 GGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
+ + + + GYF+ G +C +EG+L + G+ WSLA +++ER+ V+CK
Sbjct: 397 VDMVETVIASGISVINQIFGYFILGHPLCVIEGYLVSACGITGLWSLAIISWERWFVVCK 576
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
PFGN +F SK A+ + +W G S PP FGWSR+ P GL+ SCGPD ++ + +
Sbjct: 577 PFGNIKFDSKLAILGIAFSWIWAWGWSAPPIFGWSRYWPHGLKTSCGPDVFSGNNELGCQ 756
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
SY L + C PLS+I Y Q+ A++AVAAQQ+ES +TQKA F
Sbjct: 757 SYMLALMVSCCFFPLSVIILCYLQVWMAIRAVAAQQKESESTQKAEKEVTRMVVVMLLAF 936
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
CVC+ PY F + + + +P++F+KSA I+NP+IY FMN+QF+ CI+++
Sbjct: 937 CVCWGPYTIFVGFAAAHPGYAFHPLAAALPAYFAKSATIWNPVIYIFMNRQFRNCILQLF 1116
Query: 319 CGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
GK + D SD ++ +TEVS+VS++ V P
Sbjct: 1117-GKKVDDASDVSTTSRTEVSSVSNSSVSP 1200
>gb|AF132042.1|AF132042 Cavia porcellus green opsin mRNA, complete cds
Length = 1113
Score = 277 bits (709), Expect = 9e-73
Identities = 138/325 (42%), Positives = 203/325 (62%), Gaps = 1/325 (0%)
Frame = +2
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W ++L +A+M V + N +VLVAT+R+KKLR PLN+ILVN++
Sbjct: 125 GPFEGPNYHIAPRWVYHLTSAWMTIVVIASIFTNGLVLVATMRFKKLRHPLNWILVNLAV 304
Query: 79 GGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
+ + V GYFV G +C +EG+ ++ G+ WSLA +++ER++V+CK
Sbjct: 305 ADLAETVIASTISVVNQVYGYFVLGHPLCVVEGYTVSLCGITGLWSLAIISWERWLVVCK 484
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS- 197
PFGN RF +K A+ ++ +W + PP FGWSR+ P GL+ SCGPD ++ GT Y
Sbjct: 485 PFGNVRFDAKLAIVGIVFSWVWSAVWTAPPIFGWSRYWPYGLKTSCGPDVFS-GTSYPGV 661
Query: 198 ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXX 257
+SY L + C I PLS+I Y + A++AVA QQ+ES +TQKA
Sbjct: 662 QSYMMVLMVTCCITPLSIIVLCYLHVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVLA 841
Query: 258 FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKM 317
+C+C+ PYA FA + N + + +P++F+KSA IYNPIIY FMN+QF+ CI+++
Sbjct: 842 YCLCWGPYAFFACFATANPGYSFHPLVAALPAYFAKSATIYNPIIYVFMNRQFRNCILQL 1021
Query: 318 VCGKAMTDESDTCSSQKTEVSTVSS 342
GK + D S+ S+ +TE S+VSS
Sbjct: 1022F-GKKVEDSSELSSTSRTEASSVSS 1093
>gb|AF105152.1|AF105152 Danio rerio rhodopsin mRNA, complete cds
Length = 1584
Score = 277 bits (709), Expect = 9e-73
Identities = 138/331 (41%), Positives = 197/331 (58%), Gaps = 3/331 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ WA+ AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 166 PYEYPQYYLVAPWAYGFVAAYMFFLIITGFPVNFLTLYVTIEHKKLRTPLNYILLNLAIA 345
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFGR C LEGF T+ G + SL LA ER++V+CKP
Sbjct: 346 DLFMVFGGFTTTMYTSLHGYFVFGRLGCNLEGFFATLGGEMGLKSLVVLAIERWMVVCKP 525
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + ++PP GWSR+IPEG+QCSCG D+YT +ES
Sbjct: 526 VSNFRFGENHAIMGVAFTWVMACSCAVPPLVGWSRYIPEGMQCSCGVDYYTRTPGVNNES 705
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL +I F Y +L+ +K A QQQES TTQ+A F
Sbjct: 706 FVIYMFIVHFFIPLIVIFFCYGRLVCTVKEAARQQQESETTQRAEREVTRMVIIMVIAFL 885
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C++PYA A Y+ ++ +T+P+FF+K++ +YNP IY MNKQF+ C I +
Sbjct: 886 ICWLPYAGVAWYIFTHQGSEFGPVFMTLPAFFAKTSAVYNPCIYICMNKQFRHCMITTLC 1065
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 1066CGKNPFEEEEGASTTASKTEASSVSSSSVSP 1158
>gb|L11014.1|ZEFUVPIGX Zebrafish unknown opsin-like gene, complete cds
Length = 1584
Score = 277 bits (709), Expect = 9e-73
Identities = 138/331 (41%), Positives = 197/331 (58%), Gaps = 3/331 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ WA+ AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 166 PYEYPQYYLVAPWAYGFVAAYMFFLIITGFPVNFLTLYVTIEHKKLRTPLNYILLNLAIA 345
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
+ S +GYFVFGR C LEGF T+ G + SL LA ER++V+CKP
Sbjct: 346 DLFMVFGGFTTTMYTSLHGYFVFGRLGCNLEGFFATLGGEMGLKSLVVLAIERWMVVCKP 525
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
NFRF HA+ V TW + ++PP GWSR+IPEG+QCSCG D+YT +ES
Sbjct: 526 VSNFRFGENHAIMGVAFTWVMACSCAVPPLVGWSRYIPEGMQCSCGVDYYTRTPGVNNES 705
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ ++FI F +PL +I F Y +L+ +K A QQQES TTQ+A F
Sbjct: 706 FVIYMFIVHFFIPLIVIFFCYGRLVCTVKEAARQQQESETTQRAEREVTRMVIIMVIAFL 885
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMKMV 318
+C++PYA A Y+ ++ +T+P+FF+K++ +YNP IY MNKQF+ C I +
Sbjct: 886 ICWLPYAGVAWYIFTHQGSEFGPVFMTLPAFFAKTSAVYNPCIYICMNKQFRHCMITTLC 1065
Query: 319 CGKAMTDESDTCS--SQKTEVSTVSSTQVGP 347
CGK +E + S + KTE S+VSS+ V P
Sbjct: 1066CGKNPFEEEEGASTTASKTEASSVSSSSVSP 1158
>ref|NM_053548.1| Rattus norvegicus opsin 1 (cone pigments), medium-wave-sensitive
(color blindness, deutan), green opsin (Opn1mw), mRNA
Length = 1080
Score = 277 bits (709), Expect = 9e-73
Identities = 141/340 (41%), Positives = 210/340 (61%), Gaps = 2/340 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N +S GP++GP YHIAP W ++L + +M V + N +VL AT+R+K
Sbjct: 52 TQASIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSTWMILVVIASVFTNGLVLAATMRFK 231
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ I + V GYFV G +C +EG++ ++ G+ W
Sbjct: 232 KLRHPLNWILVNLAVADLAETIIASTISVVNQIYGYFVLGHPLCVIEGYIVSLCGITGLW 411
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A ++ +W + PP FGWSR+ P GL+ S
Sbjct: 412 SLAIISWERWLVVCKPFGNVRFDAKLATVGIVFSWVWAAVWTAPPIFGWSRYWPYGLKTS 591
Query: 184 CGPDWYTVGTKYRS-ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQK 242
CGPD ++ GT Y +SY L + C I PLS+I Y Q+ A++AVA QQ+ES +TQK
Sbjct: 592 CGPDVFS-GTSYPGVQSYMMVLMVTCCIFPLSIIVLCYLQVWLAIRAVAKQQKESESTQK 768
Query: 243 AXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPII 302
A +C+C+ PY FA + + + + ++PS+F+KSA IYNPII
Sbjct: 769 AEKEVTRMVVVMVFAYCLCWGPYTFFACFATAHPGYAFHPLVASLPSYFAKSATIYNPII 948
Query: 303 YCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
Y FMN+QF+ CI+++ GK + D S+ S+ KTEVS+VSS
Sbjct: 949 YVFMNRQFRNCILQLF-GKKVDDSSELSSTSKTEVSSVSS 1065
>gb|AF158968.1|AF158968 Macaca fascicularis LW opsin mRNA, complete cds
Length = 1095
Score = 277 bits (708), Expect = 1e-72
Identities = 138/339 (40%), Positives = 207/339 (60%), Gaps = 1/339 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N +S GP++GP YHIAP W ++L + +M V N +VL AT+++K
Sbjct: 67 TQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFK 246
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V +GYFV G +C LEGF ++ G+ W
Sbjct: 247 KLRHPLNWILVNLAVADLAETVIASTISVVNQVSGYFVLGHPMCVLEGFTVSLCGITGLW 426
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ S
Sbjct: 427 SLAIISWERWLVVCKPFGNVRFDAKLAIVGIAFSWIWSAVWTAPPIFGWSRYWPHGLKTS 606
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ + +SY L + C I+PL++I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 607 CGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIVLCYLQVWLAIRAVAKQQKESESTQKA 786
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+CVC+ PY FA + N + + +P++F+KSA IYNPIIY
Sbjct: 787 EKEVTRMVMVMIFAYCVCWGPYTFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPIIY 966
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
FMN+QF+ CI+++ GK + D S+ S+ KTEVS+VSS
Sbjct: 967 VFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSVSS 1080
>gb|AF132044.1|AF132044 Sciurus carolinensis green opsin mRNA, complete cds
Length = 1114
Score = 276 bits (706), Expect = 2e-72
Identities = 138/340 (40%), Positives = 209/340 (60%), Gaps = 2/340 (0%)
Frame = +3
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N ++ GP++GP YHIAP W +++ + +M V + N +VLVAT+++K
Sbjct: 81 TQSSIFTYTNSNATRGPFEGPNYHIAPRWVYHITSTWMIIVVIASVFTNGLVLVATMKFK 260
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V GYFV G +C +EG+ +V G+ W
Sbjct: 261 KLRHPLNWILVNLAIADLAETVIASTISVVNQLYGYFVLGHPLCVVEGYTVSVCGITGLW 440
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ S
Sbjct: 441 SLAIISWERWLVVCKPFGNMRFDAKLAIVGIAFSWIWSAVWTAPPIFGWSRYWPYGLKTS 620
Query: 184 CGPDWYTVGTKYRS-ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQK 242
CGPD ++ GT Y +SY L + C I+PLS+I Y Q+ A++AVA QQ+ES +TQK
Sbjct: 621 CGPDVFS-GTSYPGVQSYMMVLMVTCCIIPLSIIILCYLQVWLAIRAVAKQQKESESTQK 797
Query: 243 AXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPII 302
A +C+C+ PY FA + N + + +P++F+KSA IYNPII
Sbjct: 798 AEKEVTRMVVVMVFAYCLCWGPYTFFACFATANPGYAFHPLVAALPAYFAKSATIYNPII 977
Query: 303 YCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
Y FMN+QF+ CI+++ GK + D S+ S+ KTE S+VSS
Sbjct: 978 YVFMNRQFRNCILQLF-GKKVDDTSELSSASKTEASSVSS 1094
>ref|XM_054182.2| Homo sapiens similar to opsin 1 (cone pigments),
medium-wave-sensitive (color blindness, deutan) (H.
sapiens) (LOC159024), mRNA
Length = 1095
Score = 276 bits (706), Expect = 2e-72
Identities = 139/339 (41%), Positives = 206/339 (60%), Gaps = 1/339 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N +S GP++GP YHIAP W ++L + +M V + N +VL AT+++K
Sbjct: 67 TQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFK 246
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V GYFV G +C LEG+ ++ G+ W
Sbjct: 247 KLRHPLNWILVNLAVADLAETVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLW 426
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ S
Sbjct: 427 SLAIISWERWMVVCKPFGNVRFDAKLAIVGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTS 606
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ + +SY L + C I PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 607 CGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESESTQKA 786
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
FC C+ PYA FA + N + + +P+FF+KSA IYNP+IY
Sbjct: 787 EKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYPFHPLMAALPAFFAKSATIYNPVIY 966
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
FMN+QF+ CI+++ GK + D S+ S+ KTEVS+VSS
Sbjct: 967 VFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSVSS 1080
>ref|NM_000513.1| Homo sapiens opsin 1 (cone pigments), medium-wave-sensitive (color
blindness, deutan) (OPN1MW), mRNA
Length = 1095
Score = 276 bits (706), Expect = 2e-72
Identities = 139/339 (41%), Positives = 206/339 (60%), Gaps = 1/339 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N +S GP++GP YHIAP W ++L + +M V + N +VL AT+++K
Sbjct: 67 TQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFK 246
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V GYFV G +C LEG+ ++ G+ W
Sbjct: 247 KLRHPLNWILVNLAVADLAETVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLW 426
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ S
Sbjct: 427 SLAIISWERWMVVCKPFGNVRFDAKLAIVGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTS 606
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ + +SY L + C I PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 607 CGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESESTQKA 786
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
FC C+ PYA FA + N + + +P+FF+KSA IYNP+IY
Sbjct: 787 EKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYPFHPLMAALPAFFAKSATIYNPVIY 966
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
FMN+QF+ CI+++ GK + D S+ S+ KTEVS+VSS
Sbjct: 967 VFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSVSS 1080
>gb|AF158975.1|AF158975 Macaca fascicularis MW opsin mRNA, complete cds
Length = 1095
Score = 276 bits (706), Expect = 2e-72
Identities = 138/339 (40%), Positives = 207/339 (60%), Gaps = 1/339 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N +S GP++GP YHIAP W ++L + +M V + N +VL AT+++K
Sbjct: 67 TQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFK 246
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V GYFV G +C LEG+ ++ G+ W
Sbjct: 247 KLRHPLNWILVNLAVADLAETVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLW 426
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ ++ +W + PP FGWSR+ P GL+ S
Sbjct: 427 SLAIISWERWMVVCKPFGNVRFDAKLAIVGIVFSWVWAAVWTAPPIFGWSRYWPHGLKTS 606
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ + +SY L + C I PL++I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 607 CGPDVFSGSSYPGVQSYMIVLMVTCCITPLTIIVLCYLQVWLAIRAVAKQQKESESTQKA 786
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
FC C+ PYA FA + N + + +P++F+KSA IYNPIIY
Sbjct: 787 EKEVTRMVVVMFLAFCFCWGPYAFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPIIY 966
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
FMN+QF+ CI+++ GK + D S+ S+ KTEVS+VSS
Sbjct: 967 VFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSVSS 1080
>dbj|AB046547.1|AB046547 Callithrix jacchus mRNA for P553 cone opsin, complete cds
Length = 1095
Score = 276 bits (706), Expect = 2e-72
Identities = 138/339 (40%), Positives = 207/339 (60%), Gaps = 1/339 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ +++ N +S GP++GP YHIAP W ++L + +M V + N +VL AT+++K
Sbjct: 67 TQSSIFIYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMLFVVVASVFTNGLVLAATMKFK 246
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V GYFV G +C LEG+ ++ G+ W
Sbjct: 247 KLRHPLNWILVNLAVADLAETVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLW 426
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ S
Sbjct: 427 SLAIISWERWLVVCKPFGNVRFDAKLAIVGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTS 606
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ + +SY L I C +PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 607 CGPDVFSGSSYPGVQSYMIVLMITCCFLPLSIIVLCYLQVWLAIRAVAKQQKESESTQKA 786
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+CVC+ PY FA + N + + +P++F+KSA IYNPIIY
Sbjct: 787 EKEVTRMVVVMIAAYCVCWGPYTFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPIIY 966
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
FMN+QF+ CI+++ GK + D S+ S+ KTEVS+VSS
Sbjct: 967 VFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSVSS 1080
>ref|NM_020061.1| Homo sapiens opsin 1 (cone pigments), long-wave-sensitive (color
blindness, protan) (OPN1LW), mRNA
Length = 1095
Score = 276 bits (705), Expect = 3e-72
Identities = 136/339 (40%), Positives = 207/339 (60%), Gaps = 1/339 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N +S GP++GP YHIAP W ++L + +M V N +VL AT+++K
Sbjct: 67 TQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFK 246
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V +GYFV G +C LEG+ ++ G+ W
Sbjct: 247 KLRHPLNWILVNLAVADLAETVIASTISIVNQVSGYFVLGHPMCVLEGYTVSLCGITGLW 426
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ S
Sbjct: 427 SLAIISWERWLVVCKPFGNVRFDAKLAIVGIAFSWIWSAVWTAPPIFGWSRYWPHGLKTS 606
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ + +SY L + C I+PL++I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 607 CGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESESTQKA 786
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+CVC+ PY FA + N + + +P++F+KSA IYNP+IY
Sbjct: 787 EKEVTRMVVVMIFAYCVCWGPYTFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPVIY 966
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
FMN+QF+ CI+++ GK + D S+ S+ KTEVS+VSS
Sbjct: 967 VFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSVSS 1080
>ref|NM_008106.1| Mus musculus opsin 1 (cone pigments), medium-wave-sensitive (color
blindness, deutan) (Opn1mw), mRNA
Length = 1232
Score = 276 bits (705), Expect = 3e-72
Identities = 140/328 (42%), Positives = 204/328 (61%), Gaps = 1/328 (0%)
Frame = +1
Query: 16 SSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVN 75
S+ GP++GP YHIAP W ++L + +M V + N +VL AT+R+KKLR PLN+ILVN
Sbjct: 115 STKGPFEGPNYHIAPRWVYHLTSTWMILVVVASVFTNGLVLAATMRFKKLRHPLNWILVN 294
Query: 76 VSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV 135
++ I + V GYFV G +C +EG++ ++ G+ WSLA +++ER++V
Sbjct: 295 LAVADLAETIIASTISVVNQIYGYFVLGHPLCVIEGYIVSLCGITGLWSLAIISWERWLV 474
Query: 136 ICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKY 195
+CKPFGN RF +K A ++ +W + PP FGWSR+ P GL+ SCGPD ++ GT Y
Sbjct: 475 VCKPFGNVRFDAKLATVGIVFSWVWAAIWTAPPIFGWSRYWPYGLKTSCGPDVFS-GTSY 651
Query: 196 RS-ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXX 254
+SY L + C I PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 652 PGVQSYMMVLMVTCCIFPLSIIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVM 831
Query: 255 XXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
+C+C+ PY FA + + + + ++PS+F+KSA IYNPIIY FMN+QF+ CI
Sbjct: 832 VFAYCLCWGPYTFFACFATAHPGYAFHPLVASLPSYFAKSATIYNPIIYVFMNRQFRNCI 1011
Query: 315 MKMVCGKAMTDESDTCSSQKTEVSTVSS 342
+ + GK + D S+ S+ KTEVS+VSS
Sbjct: 1012LHLF-GKKVDDSSELSSTSKTEVSSVSS 1092
>gb|AF011389.1|AF011389 Mus musculus green cone pigment (GCP) mRNA, complete cds
Length = 1232
Score = 276 bits (705), Expect = 3e-72
Identities = 140/328 (42%), Positives = 204/328 (61%), Gaps = 1/328 (0%)
Frame = +1
Query: 16 SSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVN 75
S+ GP++GP YHIAP W ++L + +M V + N +VL AT+R+KKLR PLN+ILVN
Sbjct: 115 STKGPFEGPNYHIAPRWVYHLTSTWMILVVVASVFTNGLVLAATMRFKKLRHPLNWILVN 294
Query: 76 VSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV 135
++ I + V GYFV G +C +EG++ ++ G+ WSLA +++ER++V
Sbjct: 295 LAVADLAETIIASTISVVNQIYGYFVLGHPLCVIEGYIVSLCGITGLWSLAIISWERWLV 474
Query: 136 ICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKY 195
+CKPFGN RF +K A ++ +W + PP FGWSR+ P GL+ SCGPD ++ GT Y
Sbjct: 475 VCKPFGNVRFDAKLATVGIVFSWVWAAIWTAPPIFGWSRYWPYGLKTSCGPDVFS-GTSY 651
Query: 196 RS-ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXX 254
+SY L + C I PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 652 PGVQSYMMVLMVTCCIFPLSIIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVM 831
Query: 255 XXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
+C+C+ PY FA + + + + ++PS+F+KSA IYNPIIY FMN+QF+ CI
Sbjct: 832 VFAYCLCWGPYTFFACFATAHPGYAFHPLVASLPSYFAKSATIYNPIIYVFMNRQFRNCI 1011
Query: 315 MKMVCGKAMTDESDTCSSQKTEVSTVSS 342
+ + GK + D S+ S+ KTEVS+VSS
Sbjct: 1012LHLF-GKKVDDSSELSSTSKTEVSSVSS 1092
>gb|BC014826.1|BC014826 Mus musculus, opsin 1 (cone pigments), medium-wave-sensitive (color
blindness, deutan), clone MGC:25229 IMAGE:4507311, mRNA,
complete cds
Length = 1215
Score = 276 bits (705), Expect = 3e-72
Identities = 140/328 (42%), Positives = 204/328 (61%), Gaps = 1/328 (0%)
Frame = +1
Query: 16 SSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVN 75
S+ GP++GP YHIAP W ++L + +M V + N +VL AT+R+KKLR PLN+ILVN
Sbjct: 109 STKGPFEGPNYHIAPRWVYHLTSTWMILVVVASVFTNGLVLAATMRFKKLRHPLNWILVN 288
Query: 76 VSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV 135
++ I + V GYFV G +C +EG++ ++ G+ WSLA +++ER++V
Sbjct: 289 LAVADLAETIIASTISVVNQIYGYFVLGHPLCVIEGYIVSLCGITGLWSLAIISWERWLV 468
Query: 136 ICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKY 195
+CKPFGN RF +K A ++ +W + PP FGWSR+ P GL+ SCGPD ++ GT Y
Sbjct: 469 VCKPFGNVRFDAKLATVGIVFSWVWAAIWTAPPIFGWSRYWPYGLKTSCGPDVFS-GTSY 645
Query: 196 RS-ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXX 254
+SY L + C I PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 646 PGVQSYMMVLMVTCCIFPLSIIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVM 825
Query: 255 XXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
+C+C+ PY FA + + + + ++PS+F+KSA IYNPIIY FMN+QF+ CI
Sbjct: 826 VFAYCLCWGPYTFFACFATAHPGYAFHPLVASLPSYFAKSATIYNPIIYVFMNRQFRNCI 1005
Query: 315 MKMVCGKAMTDESDTCSSQKTEVSTVSS 342
+ + GK + D S+ S+ KTEVS+VSS
Sbjct: 1006LHLF-GKKVDDSSELSSTSKTEVSSVSS 1086
>gb|AF190672.1|AF190672 Mus musculus green opsin mRNA, complete cds
Length = 1220
Score = 276 bits (705), Expect = 3e-72
Identities = 140/328 (42%), Positives = 204/328 (61%), Gaps = 1/328 (0%)
Frame = +2
Query: 16 SSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVN 75
S+ GP++GP YHIAP W ++L + +M V + N +VL AT+R+KKLR PLN+ILVN
Sbjct: 131 STKGPFEGPNYHIAPRWVYHLTSTWMILVVVASVFTNGLVLAATMRFKKLRHPLNWILVN 310
Query: 76 VSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV 135
++ I + V GYFV G +C +EG++ ++ G+ WSLA +++ER++V
Sbjct: 311 LAVADLAETIIASTISVVNQIYGYFVLGHPLCVIEGYIVSLCGITGLWSLAIISWERWLV 490
Query: 136 ICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKY 195
+CKPFGN RF +K A ++ +W + PP FGWSR+ P GL+ SCGPD ++ GT Y
Sbjct: 491 VCKPFGNVRFDAKLATVGIVFSWVWAAIWTAPPIFGWSRYWPYGLKTSCGPDVFS-GTSY 667
Query: 196 RS-ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXX 254
+SY L + C I PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 668 PGVQSYMMVLMVTCCIFPLSIIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVM 847
Query: 255 XXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
+C+C+ PY FA + + + + ++PS+F+KSA IYNPIIY FMN+QF+ CI
Sbjct: 848 VFAYCLCWGPYTFFACFATAHPGYAFHPLVASLPSYFAKSATIYNPIIYVFMNRQFRNCI 1027
Query: 315 MKMVCGKAMTDESDTCSSQKTEVSTVSS 342
+ + GK + D S+ S+ KTEVS+VSS
Sbjct: 1028LHLF-GKKVDDSSELSSTSKTEVSSVSS 1108
>dbj|AB046546.1|AB046546 Callithrix jacchus mRNA for P561 cone opsin, complete cds
Length = 1095
Score = 275 bits (703), Expect = 4e-72
Identities = 138/339 (40%), Positives = 206/339 (60%), Gaps = 1/339 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N +S GP++GP YHIAP W ++L + +M V + N +VL AT+++K
Sbjct: 67 TQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMLFVVVASVFTNGLVLAATMKFK 246
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V +GYFV G +C LEG+ ++ G+ W
Sbjct: 247 KLRHPLNWILVNLAIADLAETVIASTISVVNQVHGYFVLGHPMCVLEGYTVSLCGITGLW 426
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ V +W + PP FGWSR+ P GL+ S
Sbjct: 427 SLAIISWERWLVVCKPFGNVRFDAKLAIVGVAFSWIWSAVWTAPPIFGWSRYWPHGLKTS 606
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ + +SY L I C +PL +I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 607 CGPDVFSGSSYPGVQSYMIVLMITCCFLPLGIIVLCYLQVWLAIRAVAKQQKESESTQKA 786
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+CVC+ PY FA + N + + +P++F+KSA IYNPIIY
Sbjct: 787 EKEVTRMVVVMIVAYCVCWGPYTFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPIIY 966
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
FMN+QF+ CI+++ GK + D S+ S+ KTEVS+VSS
Sbjct: 967 VFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSSVSS 1080
>emb|X62405.1|PMRO P.minutus mRNA for sand goby rod opsin
Length = 1410
Score = 275 bits (703), Expect = 4e-72
Identities = 140/348 (40%), Positives = 204/348 (58%), Gaps = 5/348 (1%)
Frame = +1
Query: 5 SEEEFYLFKNISSVG----PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
+E F+ +++ G P++ PQY++ A+ A+M + L GFP+N + L TL
Sbjct: 55 TEGPFFYIPMVNTTGIVRSPYEYPQYYLVNPAAYAALGAYMFFLILTGFPINFLTLYVTL 234
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLV 120
+KKLR LN IL+N++ + S +GYFV GR C +EGF T+ G +
Sbjct: 235 EHKKLRTALNLILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNVEGFFATLGGEI 414
Query: 121 TGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGL 180
WSL LA ER++V+CKP NFRF+ HA+ V +W + ++PP GWSR+IPEG+
Sbjct: 415 ALWSLVVLAVERWVVVCKPISNFRFTENHAIMGVAFSWIMAATCAVPPLVGWSRYIPEGM 594
Query: 181 QCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATT 240
QCSCG D+YT + +ES+ ++FI F+ PL +I F Y +LL A+K AA QQES TT
Sbjct: 595 QCSCGVDYYTRAEGFNNESFVIYMFIVHFLAPLIVIFFCYGRLLCAVKEAAAAQQESETT 774
Query: 241 QKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNP 300
Q+A F ++PYA+ A Y+ ++ +TIP+FF+KS+ +YNP
Sbjct: 775 QRAEREVTRMVIIMVIGFLTSWLPYASVAWYIFTHQGTEFGPLFMTIPAFFAKSSALYNP 954
Query: 301 IIYCFMNKQFQAC-IMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
+IY MNKQF+ C I + CGK +E + S+ KTE S+VSS+ V P
Sbjct: 955 MIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTKTEASSVSSSSVSP 1098
>gb|AF132041.1|AF132041 Odocoileus virginianus green opsin mRNA, complete cds
Length = 1221
Score = 272 bits (696), Expect = 3e-71
Identities = 137/327 (41%), Positives = 201/327 (60%)
Frame = +3
Query: 16 SSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVN 75
S+ P++GP YHIAP W ++L +A+M V + N +VL AT+R+KKLR PLN+ILVN
Sbjct: 117 STRDPFEGPNYHIAPRWVYHLTSAWMVFVVIASVFTNGLVLAATMRFKKLRHPLNWILVN 296
Query: 76 VSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV 135
++ + I + V GYFV G +C +EG+ ++ G+ WSLA +++ER++V
Sbjct: 297 LAIADLVETIIASTISVVNQMYGYFVLGHPLCVVEGYTVSLCGITGLWSLAIISWERWMV 476
Query: 136 ICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKY 195
+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ SCGPD ++ +
Sbjct: 477 VCKPFGNVRFDAKLAIAGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYP 656
Query: 196 RSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXX 255
+SY L I C +PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 657 GVQSYMIVLMITCCFIPLSVIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVMVMI 836
Query: 256 XXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
FC+C+ PYA FA + + + + +P++F+KSA IYNPIIY FMN+QF+ CI+
Sbjct: 837 FAFCLCWGPYAFFACFAAAHPGYAFHPLVAALPAYFAKSATIYNPIIYVFMNRQFRNCIL 1016
Query: 316 KMVCGKAMTDESDTCSSQKTEVSTVSS 342
++ GK + D S+ S KTE S+VSS
Sbjct: 1017QLF-GKKVDDSSELSSVSKTEASSVSS 1094
>gb|AF132040.1|AF132040 Felis catus red opsin mRNA, complete cds
Length = 1192
Score = 272 bits (696), Expect = 3e-71
Identities = 136/324 (41%), Positives = 200/324 (60%)
Frame = +1
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W +++ +A+M V + N +VL AT+++KKLR PLN+ILVN++
Sbjct: 112 GPFEGPNYHIAPRWVYHVTSAWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAV 291
Query: 79 GGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
I + V GYFV G +C LEG+ ++ G+ WSLA +++ER++V+CK
Sbjct: 292 ADLAETIIASTISVVNQIYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCK 471
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
PFGN RF +K A+ + +W + PP FGWSR+ P GL+ SCGPD ++ + +
Sbjct: 472 PFGNVRFDAKLAIAGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQ 651
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
SY L I C I+PLS+I Y Q+ A++AVA QQ+ES +TQKA +
Sbjct: 652 SYMIVLMITCCIIPLSVIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVMVMIFAY 831
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
CVC+ PY FA + + + + +P++F+KSA IYNPIIY FMN+QF+ CIM++
Sbjct: 832 CVCWGPYTFFACFAAAHPGYAFHPLVAALPAYFAKSATIYNPIIYVFMNRQFRNCIMQLF 1011
Query: 319 CGKAMTDESDTCSSQKTEVSTVSS 342
GK + D S+ S+ +TE S+VSS
Sbjct: 1012-GKKVDDGSELSSASRTEASSVSS 1080
>gb|AF110495.1|AF110495 Phoca vitulina long-wavelength cone opsin mRNA, complete cds
Length = 1095
Score = 272 bits (695), Expect = 4e-71
Identities = 136/324 (41%), Positives = 198/324 (60%)
Frame = +1
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W ++L + +M V + N +VLVAT+R+KKLR PLN+ILVN++
Sbjct: 112 GPFEGPNYHIAPRWVYHLTSTWMIFVVIASVFTNGLVLVATMRFKKLRHPLNWILVNLAV 291
Query: 79 GGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
I + V GYFV G +C +EG+ ++ G+ WSLA +++ER++V+CK
Sbjct: 292 ADLAETIIASTISIVNQIYGYFVLGHPLCVVEGYTVSLCGITGLWSLAIISWERWMVVCK 471
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
PFGN RF +K A+ + +W + PP FGWSR+ P GL+ SCGPD ++ + +
Sbjct: 472 PFGNVRFDAKLAIVGIAFSWVWSALWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQ 651
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
SY L C I+PL +I Y Q+ A++AVA QQ+ES +TQKA F
Sbjct: 652 SYMIVLMTTCCIIPLGVIILCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVFAF 831
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
CVC+ PY FA + + + + +P++F+KSA IYNPIIY FMN+QF+ CI+++
Sbjct: 832 CVCWGPYTFFACFAAAHPGYAFHPLVAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF 1011
Query: 319 CGKAMTDESDTCSSQKTEVSTVSS 342
GK + D S+ S+ KTE S+VSS
Sbjct: 1012-GKKVDDSSELSSASKTEASSVSS 1080
>gb|AF139726.1|AF139726 Nannospalax ehrenbergi green cone pigment opsin mRNA, complete cds
Length = 1217
Score = 271 bits (694), Expect = 5e-71
Identities = 140/340 (41%), Positives = 204/340 (59%), Gaps = 2/340 (0%)
Frame = +2
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N +S GP++GP YHIAP W ++L +M V + N +VLVAT+R+K
Sbjct: 89 TQASLFTYTNSNSTRGPFEGPNYHIAPRWVYHLTTTWMILVVVASIFTNGLVLVATMRFK 268
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ I + V GYFV G +C +EG+ ++ G+ W
Sbjct: 269 KLRHPLNWILVNLAVADLAETIIASTISVVNQIYGYFVLGHPLCVIEGYTVSLCGITGLW 448
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A + W + PP FGWSR+ P GL+ S
Sbjct: 449 SLAIISWERWMVVCKPFGNVRFDAKLATMGITFAWVWAAVWTAPPVFGWSRYWPYGLKTS 628
Query: 184 CGPDWYTVGTKYRS-ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQK 242
CGPD ++ GT Y +SY L I C I+PLS+I Y Q+ A++ VA QQ+ES +TQK
Sbjct: 629 CGPDVFS-GTSYPGVQSYMVVLMITCCIIPLSIILLCYLQVWLAIRTVAKQQKESESTQK 805
Query: 243 AXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPII 302
A +C+C+ PY F + + + + +P++F+KSA IYNPII
Sbjct: 806 AEKEVTHMVVVMVFAYCLCWGPYTFFVCFATAHPGYAFHPLVAALPAYFAKSATIYNPII 985
Query: 303 YCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
Y FMN+QFQ CI+++ GK + D S+ S+ KTE S+VSS
Sbjct: 986 YVFMNRQFQNCILQLF-GKKVDDSSELSSTSKTEASSVSS 1102
>gb|AF222333.1|AF222333 Taeniopygia guttata LWS opsin mRNA, complete cds
Length = 1184
Score = 271 bits (693), Expect = 6e-71
Identities = 138/344 (40%), Positives = 205/344 (59%), Gaps = 1/344 (0%)
Frame = +2
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
+ + + + N ++ GP++GP YHIAP W + L + +M V + N +VLVAT ++K
Sbjct: 92 TRDSIFTYTNSNNTRGPFEGPNYHIAPRWVYNLTSLWMIFVVVASVFTNGLVLVATAKFK 271
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V GYF+ G +C +EG+ + G+ W
Sbjct: 272 KLRHPLNWILVNLAVADLGETVIASTISVVNQIFGYFILGHPMCVIEGYTVSACGITALW 451
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER+ V+CKPFGN +F K A+ VL +W + PP FGWSR+ P GL+ S
Sbjct: 452 SLAIISWERWFVVCKPFGNIKFDGKLAVAGVLFSWIWSCAWTAPPIFGWSRYWPHGLKTS 631
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ T +SY L + C PL++I F Y Q+ A++AVAAQQ+ES +TQKA
Sbjct: 632 CGPDVFSGSTDPGVQSYMVVLMVTCCFFPLAVIIFCYLQVWLAIRAVAAQQKESESTQKA 811
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+C C+ PY FA + N + +P+FF+KSA IYNPIIY
Sbjct: 812 EKEVSRMVVVMILAYCFCWGPYTIFACFAAANPGYAFHPLTAALPAFFAKSATIYNPIIY 991
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
FMN+QF+ CI+++ GK + D S+ S+ +TEVS+VS++ V P
Sbjct: 992 VFMNRQFRNCILQLF-GKKVDDGSEV-STSRTEVSSVSNSSVSP 1117
>gb|AF280398.1|AF280398 Bos taurus red opsin mRNA, complete cds
Length = 1264
Score = 271 bits (692), Expect = 8e-71
Identities = 136/327 (41%), Positives = 200/327 (60%)
Frame = +1
Query: 16 SSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVN 75
S+ P++GP YHIAP W ++L +A+M V + N +VL AT+R+KKLR PLN+ILVN
Sbjct: 103 STRDPFEGPNYHIAPRWVYHLTSAWMVFVVIASVFTNGLVLAATMRFKKLRHPLNWILVN 282
Query: 76 VSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV 135
++ I + V GYFV G +C +EG+ ++ G+ WSLA +++ER++V
Sbjct: 283 LAIADLAETIIASTISVVNQMYGYFVLGHPLCVVEGYTVSLCGITGLWSLAIISWERWMV 462
Query: 136 ICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKY 195
+CKPFGN RF +K A+T + +W + PP FGWSR+ P GL+ SCGPD ++ +
Sbjct: 463 VCKPFGNVRFDAKLAITGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYP 642
Query: 196 RSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXX 255
+SY L I C +PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 643 GVQSYMIVLMITCCFIPLSVIILCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVMVMI 822
Query: 256 XXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
+C+C+ PY FA + + + + +P++F+KSA IYNPIIY FMN+QF+ CI+
Sbjct: 823 FAYCLCWGPYTFFACFAAAHPGYAFHPLVAALPAYFAKSATIYNPIIYVFMNRQFRNCIL 1002
Query: 316 KMVCGKAMTDESDTCSSQKTEVSTVSS 342
++ GK + D S+ S KTE S+VSS
Sbjct: 1003QLF-GKKVDDSSELSSVSKTEASSVSS 1080
>gb|AF158098.1|AF158098 Hippoglossus hippoglossus pineal organ putative UV-sensitive opsin
mRNA, partial cds
Length = 681
Score = 271 bits (692), Expect = 8e-71
Identities = 128/227 (56%), Positives = 158/227 (69%)
Frame = +1
Query: 71 YILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAF 130
YILVN+ F G + +FSV VFV++ GYF G +CALE +G++AGLVT WSLA L+
Sbjct: 1 YILVNICFAGLIFVVFSVSQVFVSTMRGYFFLGPTLCALESAMGSIAGLVTSWSLAVLSL 180
Query: 131 ERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYT 190
ERY+VICKPFG FRF S HA V TW +GI +IPPFFGWSR+IPEGL CSCGPDWYT
Sbjct: 181 ERYLVICKPFGAFRFGSNHAAGAVAFTWFMGISCAIPPFFGWSRYIPEGLGCSCGPDWYT 360
Query: 191 VGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXX 250
++ SYT FL + CFI+PL++I FSYTQLL +L+AVAAQQ ES +TQKA
Sbjct: 361 HNEEFHCSSYTNFLMVTCFILPLTIIIFSYTQLLSSLRAVAAQQTESVSTQKAEKEVSRM 540
Query: 251 XXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACI 297
F CY PYA A+Y ++ + D RLVTIP+FFSKS+C+
Sbjct: 541 IIVMVGSFVTCYGPYALAALYFAHSSDTNKDYRLVTIPAFFSKSSCV 681
>emb|Z22218.1|CJOPSINA C.jacchus opsin mRNA
Length = 1050
Score = 270 bits (691), Expect = 1e-70
Identities = 135/336 (40%), Positives = 203/336 (60%), Gaps = 1/336 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
++ + + N +S GP++GP YHIAP W ++L + +M V + N +VL AT+++K
Sbjct: 46 TQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMLFVVVASVFTNGLVLAATMKFK 225
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + V +GYFV G +C LEG+ ++ G+ W
Sbjct: 226 KLRHPLNWILVNLAIADLAETVIASTISVVNQVHGYFVLGHPMCVLEGYTVSLCGITGLW 405
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SLA +++ER++V+CKPFGN RF +K A+ V +W + PP FGWSR+ P GL+ S
Sbjct: 406 SLAIISWERWLVVCKPFGNVRFDAKLAIVGVAFSWIWSAVWTAPPIFGWSRYWPHGLKTS 585
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ + +SY L I C +PL +I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 586 CGPDVFSGSSYPGVQSYMIVLMITCCFLPLGIIVLCYLQVWLAIRAVAKQQKESESTQKA 765
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+CVC+ PY FA + N + + +P++F+KSA IYNPIIY
Sbjct: 766 EKEVTRMVVVMIVAYCVCWGPYTFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPIIY 945
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVST 339
FMN+QF+ CI+++ GK + D S+ S+ KTEVS+
Sbjct: 946 VFMNRQFRNCILQLF-GKKVDDGSELSSASKTEVSS 1050
>gb|AF132043.1|AF132043 Equus caballus green opsin mRNA, complete cds
Length = 1188
Score = 270 bits (689), Expect = 2e-70
Identities = 137/334 (41%), Positives = 202/334 (60%)
Frame = +3
Query: 9 FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQP 68
F N ++ P++GP YHIAP W +++ +A+M V + N +VL AT+R+KKLR P
Sbjct: 96 FTYTNNNATRDPFEGPNYHIAPRWVYHVTSAWMIFVVIASVFTNGLVLAATMRFKKLRHP 275
Query: 69 LNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFL 128
LN+ILVN++ I + V GYFV G +C +EG+ ++ G+ WSLA +
Sbjct: 276 LNWILVNLAVADLAETIIASTISVVNQIYGYFVLGHPMCVVEGYTVSLCGITGLWSLAII 455
Query: 129 AFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDW 188
++ER++V+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ SCGPD
Sbjct: 456 SWERWMVVCKPFGNVRFDAKLAVAGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDV 635
Query: 189 YTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXX 248
++ + +SY L I C I+PLS+I Y Q+ A++AVA QQ+ES +TQKA
Sbjct: 636 FSGSSYPGVQSYMIVLMITCCIIPLSVIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVT 815
Query: 249 XXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNK 308
FC+C+ PY FA + + + + +P++F+KSA IYNPIIY FMN+
Sbjct: 816 RMVMVMVFAFCLCWGPYTFFACFAAAHPGYAFHPLVAALPAYFAKSATIYNPIIYVFMNR 995
Query: 309 QFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSS 342
QF+ CI+++ GK + D S+ S KTE S+VSS
Sbjct: 996 QFRNCILQLF-GKKVDDSSELSSVSKTEASSVSS 1094
>gb|AF038947.1|AF038947 Ambystoma tigrinum red cone visual pigment mRNA, complete cds
Length = 1617
Score = 267 bits (683), Expect = 9e-70
Identities = 134/329 (40%), Positives = 194/329 (58%)
Frame = +2
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W + L +M V N +VLVAT+++KKLR PLN+ILVN++
Sbjct: 260 GPFEGPNYHIAPRWVYNLTTLWMIFVVFASVFTNGLVLVATMKFKKLRHPLNWILVNLAI 439
Query: 79 GGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
+ + + GYF+ G +C +EG+ +V G+ WSL +A+ER+ V+CK
Sbjct: 440 ADLGETVIASTISVINQMFGYFILGHPLCVIEGYTVSVCGISALWSLTIIAWERWFVVCK 619
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
PFGN +F K A ++ +W G PP FGWSR+ P GL+ SCGPD ++ + +
Sbjct: 620 PFGNIKFDGKLAAAGIIFSWVWSAGWCAPPIFGWSRYWPHGLKTSCGPDVFSGSSDPGVQ 799
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
SY L I C I+PLS+I Y Q+ A++ VA QQ+ES +TQKA +
Sbjct: 800 SYMMVLMITCCILPLSIIIICYIQVWWAIRQVAMQQKESESTQKAEREVSRMVVVMIIAY 979
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
C+ PY FA + N + ++P+FF+KSA IYNPIIY FMN+QF+ CI ++
Sbjct: 980 IFCWGPYTFFACFAAANPGYAFHPLAASLPAFFAKSATIYNPIIYVFMNRQFRNCIYQLF 1159
Query: 319 CGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
GK + D S+ S+ +TEVS+VS++ V P
Sbjct: 1160-GKKVDDGSEMSSASRTEVSSVSNSSVSP 1243
>gb|M62903.1|CHKVISUPIG Chicken red-sensitive pigment mRNA, complete cds
Length = 1318
Score = 265 bits (678), Expect = 3e-69
Identities = 132/329 (40%), Positives = 197/329 (59%)
Frame = +3
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W + L + +M V N +VLVAT ++KKLR PLN+ILVN++
Sbjct: 111 GPFEGPNYHIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAV 290
Query: 79 GGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
+ + + +GYF+ G +C +EG+ + G+ WSLA +++ER+ V+CK
Sbjct: 291 ADLGETVIASTISVINQISGYFILGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCK 470
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
PFGN +F K A+ +L +W + PP FGWSR+ P GL+ SCGPD ++ + +
Sbjct: 471 PFGNIKFDGKLAVAGILFSWLWSCAWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSDPGVQ 650
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
SY L + C PL++I Y Q+ A++AVAAQQ+ES +TQKA +
Sbjct: 651 SYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESESTQKAEKEVSRMVVVMIVAY 830
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
C C+ PY FA + N + +P++F+KSA IYNPIIY FMN+QF+ CI+++
Sbjct: 831 CFCWGPYTFFACFAAANPGYAFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF 1010
Query: 319 CGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
GK + D S+ S+ +TEVS+VS++ V P
Sbjct: 1011-GKKVDDGSEV-STSRTEVSSVSNSSVSP 1091
>gb|AF137207.1|AF137207 Lepisosteus osseus rhodopsin (Rhod) gene, partial cds
Length = 861
Score = 265 bits (678), Expect = 3e-69
Identities = 122/287 (42%), Positives = 177/287 (61%)
Frame = +1
Query: 28 IAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS 87
+A W F AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++ G +
Sbjct: 1 LAEPWKFSALAAYMFFLIITGFPINFLTLYVTIEHKKLRTPLNYILLNLAVGDLFMVFGG 180
Query: 88 VFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSS 147
S NGYFVFG C +EGF T+ G+++ WSL LA ERY+V+CKP NFRF
Sbjct: 181 FTTTMYTSMNGYFVFGTTGCNIEGFFATLGGMISLWSLVVLAVERYLVVCKPMSNFRFGE 360
Query: 148 KHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIF 207
H++ VL TW + ++PP FGWSR+IPEG+QCSCG D+YT+ + +ES+ ++F
Sbjct: 361 SHSIMGVLFTWVMACACAVPPLFGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFTV 540
Query: 208 CFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAA 267
++P S++ F Y +L+ +KA AAQQQES TTQ+A + VC+ PY +
Sbjct: 541 HLLLPFSVVFFCYGRLVCTVKAAAAQQQESETTQRAEREVTRMVVLMVISYIVCWTPYGS 720
Query: 268 FAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
A Y+ ++ +T P+FF+KS+ +YNP+IY MNKQF+ C+
Sbjct: 721 VAWYIFTHKGADFGPVFMTGPAFFAKSSALYNPLIYVCMNKQFRHCM 861
>gb|AF055457.1|AF055457 Tursiops truncatus long-wavelength sensitive cone opsin mRNA,
partial cds
Length = 1092
Score = 265 bits (677), Expect = 4e-69
Identities = 133/327 (40%), Positives = 197/327 (59%)
Frame = +1
Query: 16 SSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVN 75
S+ P+DGP YHIAP W ++L + +M V + N VL AT+++KKLR PLN++LVN
Sbjct: 103 STRDPFDGPNYHIAPRWVYHLTSVWMVFVLIASIFTNGPVLAATMKFKKLRHPLNWMLVN 282
Query: 76 VSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV 135
++ + + V GYFV G +C +EGF ++ G+ WSLA +++ER++V
Sbjct: 283 LAVADLAETVIASTISVVNQMYGYFVLGHPLCIVEGFTVSLCGITGLWSLAIISWERWMV 462
Query: 136 ICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKY 195
+CKPFGN RF +K A+ + +W + PP FGWSR+ P GL+ SCGPD ++ +
Sbjct: 463 VCKPFGNVRFDAKLAIAGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYP 642
Query: 196 RSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXX 255
+SY L I C +PLS+I Y Q+ A++AVA QQ+ES +T+KA
Sbjct: 643 GVQSYMITLMITCCFIPLSVIVLCYLQVWLAIRAVAKQQKESESTRKAEKEVTRMVMVMI 822
Query: 256 XXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
+C+C+ PY FA + + + + +PS+F+KSA IYNPIIY FMN+QF+ CI+
Sbjct: 823 FAYCLCWGPYTFFACFAAAHPGYAFHPLVAALPSYFAKSATIYNPIIYVFMNRQFRNCIL 1002
Query: 316 KMVCGKAMTDESDTCSSQKTEVSTVSS 342
++ GK + D S+ S KTE S+VSS
Sbjct: 1003QLF-GKKVDDSSELSSVSKTEASSVSS 1080
>gb|AF137206.1|AF137206 Acipenser sp. rhodopsin (Rhod) gene, partial cds
Length = 864
Score = 265 bits (677), Expect = 4e-69
Identities = 123/288 (42%), Positives = 176/288 (60%)
Frame = +1
Query: 28 IAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS 87
+A W + AA+M + L GFP+N + L T+++KKLR PLNYIL+N++ +
Sbjct: 1 LAEPWKYSALAAYMFFLILTGFPINFLTLYVTIQHKKLRTPLNYILLNLAVADLFMVFGG 180
Query: 88 VFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSS 147
S NGYFVFG C +EGF T+ G + W L LA ERYIV+CKP NFRF
Sbjct: 181 FTTTMYTSMNGYFVFGTTGCNIEGFFATLGGEIALWCLVVLAIERYIVVCKPMSNFRFGE 360
Query: 148 KHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIF 207
HA+ V+ TW + + + PP FGWSR+IPEG+QCSCG D+YT+ + +ES+ ++F+
Sbjct: 361 NHAIMGVVFTWIMALSCAAPPLFGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVV 540
Query: 208 CFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAA 267
F +PL I F Y +L+ +K AAQQQES TTQ+A + VC++PYA+
Sbjct: 541 HFTIPLITISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVLMVISYLVCWIPYAS 720
Query: 268 FAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
A Y+ ++ +T P+FF+KS+ +YNP+IY MNKQF+ C++
Sbjct: 721 VAWYIFTHKGSHFGPVFMTTPAFFAKSSALYNPLIYILMNKQFRHCMI 864
>emb|X57490.1|GGIOD G.gallus mRNA for iodopsin
Length = 1317
Score = 265 bits (677), Expect = 4e-69
Identities = 132/329 (40%), Positives = 197/329 (59%)
Frame = +2
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W + L + +M V N +VLVAT ++KKLR PLN+ILVN++
Sbjct: 110 GPFEGPNYHIAPRWVYNLTSLWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAV 289
Query: 79 GGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
+ + + +GYF+ G +C +EG+ + G+ WSLA +++ER+ V+CK
Sbjct: 290 ADLGETVIASTISVINQISGYFILGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCK 469
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
PFGN +F K A+ +L +W + PP FGWSR+ P GL+ SCGPD ++ + +
Sbjct: 470 PFGNIKFDGKLAVAGILFSWLWSCAWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSDPGVQ 649
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
SY L + C PL++I Y Q+ A++AVAAQQ+ES +TQKA +
Sbjct: 650 SYMVVLMVTCCFFPLAIIILCYLQVSLAIRAVAAQQKESESTQKAEKEVSRMVVVMIVAY 829
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
C C+ PY FA + N + +P++F+KSA IYNPIIY FMN+QF+ CI+++
Sbjct: 830 CFCWGPYTFFACFAAANPGYAFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF 1009
Query: 319 CGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
GK + D S+ S+ +TEVS+VS++ V P
Sbjct: 1010-GKKVDDGSEV-STSRTEVSSVSNSSVSP 1090
>gb|U90895.1|XLU90895 Xenopus laevis red-sensitive cone opsin mRNA, complete cds
Length = 1344
Score = 264 bits (674), Expect = 1e-68
Identities = 137/330 (41%), Positives = 193/330 (57%), Gaps = 1/330 (0%)
Frame = +1
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W + L + +M V N +V+VATL++KKLR PLN+ILVN++
Sbjct: 217 GPFEGPNYHIAPRWVYNLTSIWMIFVVFASVFTNGLVIVATLKFKKLRHPLNWILVNMAI 396
Query: 79 GGF-LLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVIC 137
I S VF GYF+ G +C LEGF + G+ WSL +A+ER+ V+C
Sbjct: 397 ADLGETVIASTISVF-NQIFGYFILGHPMCVLEGFTVSTCGITALWSLTVIAWERWFVVC 573
Query: 138 KPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS 197
KPFGN +F K A T ++ +W G PP FGWSRF P GL+ SCGPD ++ +
Sbjct: 574 KPFGNIKFDEKLAATGIIFSWVWSAGWCAPPMFGWSRFWPHGLKTSCGPDVFSGSSDPGV 753
Query: 198 ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXX 257
+SY L I C I+PL++I Y + ++ VA QQ+ES +TQKA
Sbjct: 754 QSYMLVLMITCCIIPLAIIILCYLHVWWTIRQVAQQQKESESTQKAEREVSRMVVVMIVA 933
Query: 258 FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKM 317
+ C+ PY FA + + + +P++F+KSA IYNPIIY FMN+QF+ CI +M
Sbjct: 934 YIFCWGPYTFFACFAAFSPGYSFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIYQM 1113
Query: 318 VCGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
GK + D S+ S+ +TEVS+VS++ V P
Sbjct: 1114F-GKKVDDGSEVSSTSRTEVSSVSNSSVSP 1200
>gb|AF028016.1|AF028016 Ictalurus punctatus rhodopsin mRNA, partial cds
Length = 914
Score = 262 bits (669), Expect = 4e-68
Identities = 130/309 (42%), Positives = 187/309 (60%), Gaps = 8/309 (2%)
Frame = +3
Query: 21 WDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS--- 77
++ PQY++ A+ A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++
Sbjct: 3 YEYPQYYLVNPAAYAALGAYMFLLILVGFPINFLTLYVTIEHKKLRTPLNYILLNLAVAN 182
Query: 78 ----FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERY 133
FGGF +F+ S GYFV G C LEGF T++G + WSL LA ER+
Sbjct: 183 LFMVFGGFTTTMFT-------SIRGYFVLGHLGCNLEGFFATLSGEIALWSLVVLAIERW 341
Query: 134 IVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGT 193
+V+CKP NFRF HA+ + TWT+ + + PP GWSR+IPEG+QCSCG D+YT
Sbjct: 342 VVVCKPISNFRFGENHAIMGLAFTWTMAMACAAPPLVGWSRYIPEGMQCSCGIDYYTRAE 521
Query: 194 KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXX 253
+ +ES+ ++F F+ PL+++ F Y +LL A+K AA QQES TTQ+A
Sbjct: 522 GFNNESFVVYMFTCHFMTPLTIVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVI 701
Query: 254 XXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC 313
F +C+ PYA A ++ ++ +TIP+FF+KS+ IYNP+IY +NKQF+ C
Sbjct: 702 MVIAFLICWCPYAGVAWFIFTHQGSEFGPVFMTIPAFFAKSSSIYNPMIYICLNKQFRHC 881
Query: 314 -IMKMVCGK 321
I + CGK
Sbjct: 882 MITTLCCGK 908
>gb|U97272.1|U97272 Abyssocottus korotneffi rod opsin gene, partial cds
Length = 867
Score = 262 bits (669), Expect = 4e-68
Identities = 126/283 (44%), Positives = 176/283 (61%)
Frame = +1
Query: 33 AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF 92
A+ A+M + LIGFP+N + L TL +KKLR PLNYIL+N++ + +
Sbjct: 19 AYAALGAYMFLLILIGFPINFLTLYVTLEHKKLRTPLNYILLNLAVANLFMVLGGFTTTM 198
Query: 93 VASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALT 152
S +GYFV GR C LE F T+ G + WSL LA ER+IV+CKP NFRF+ HA+
Sbjct: 199 YTSMHGYFVLGRLGCNLEAFFATLGGEIALWSLVVLAIERWIVVCKPISNFRFTEDHAIM 378
Query: 153 VVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVP 212
+ TW + + ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++FI F++P
Sbjct: 379 GLAFTWVMALACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVIYMFIVHFLIP 558
Query: 213 LSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYM 272
LS+I F Y +LL A+K A QQES TTQ+A F VC++PYA+ A ++
Sbjct: 559 LSVIFFCYGRLLCAVKEAPAAQQESETTQRAEKEVSRMVVIMVIGFLVCWLPYASVAWWI 738
Query: 273 VNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
N+ +T+PSFF+KSA IYNP+IY MNKQF+ C++
Sbjct: 739 FCNQGSDFGPIFMTLPSFFAKSAAIYNPMIYICMNKQFRHCMI 867
>gb|U97273.1|U97273 Cottinella boulengeri rod opsin gene, partial cds
Length = 867
Score = 261 bits (668), Expect = 5e-68
Identities = 125/283 (44%), Positives = 177/283 (62%)
Frame = +1
Query: 33 AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF 92
A+ A+M + LIGFP+N + L TL +KKLR PLNYIL+N++ G + +
Sbjct: 19 AYAALGAYMFLLILIGFPINFLTLYVTLEHKKLRTPLNYILLNLAVGNLFMVLGGFTTTM 198
Query: 93 VASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALT 152
S +GYFV GR C LEGF T+ G + WSL LA ER+IV+CKP FRF+ HA+
Sbjct: 199 YTSMHGYFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVCKPISKFRFTEDHAIM 378
Query: 153 VVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVP 212
+ +W +G+ ++PP GWSR+IPEG++CSCG D+YT + +ES+ ++FI F++P
Sbjct: 379 GLAFSWVMGLACAVPPLVGWSRYIPEGMKCSCGVDYYTRAEGFNNESFVIYMFIVHFLIP 558
Query: 213 LSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYM 272
LS+I F Y +LL A+K AA QQES TTQ+A F VC++PYA+ A ++
Sbjct: 559 LSVIFFCYGRLLCAVKEAAAAQQESETTQRAEKEVSRMVVIMVIGFLVCWLPYASVAWWI 738
Query: 273 VNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
N+ +T+PSFF+K IYNP+IY MNKQF+ C++
Sbjct: 739 FCNQGSDFGPIFMTLPSFFAKRPAIYNPMIYICMNKQFRHCMI 867
>gb|AF247131.1|AF247131 Dimidiochromis compressiceps putative red sensitive opsin LWS mRNA,
complete cds
Length = 1355
Score = 261 bits (668), Expect = 5e-68
Identities = 134/325 (41%), Positives = 197/325 (60%), Gaps = 3/325 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++GP YHIAP W + L +M V ++ N +VLVAT+++KKLR PLN+ILVN++
Sbjct: 171 PFEGPNYHIAPRWIYNLATLWMFVVVVLSVFTNGLVLVATMKFKKLRHPLNWILVNLAIA 350
Query: 80 GFLLCIFSVFPVFVASCN---GYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVI 136
+VF ++ CN GYF+ G +C EG++ +V G+ WSL +++ER+IV+
Sbjct: 351 DLGE---TVFASTISVCNQFFGYFILGHPMCIFEGYVVSVCGIAALWSLTIISWERWIVV 521
Query: 137 CKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYR 196
CKPFGN +F +K A ++ +W PP FGWSR+ P GL+ SCGPD ++
Sbjct: 522 CKPFGNVKFDAKWATAGIVFSWVWAAVWCAPPIFGWSRYWPHGLKTSCGPDVFSGSEDPG 701
Query: 197 SESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXX 256
+SY L + C I+PL++I Y + A++AVA QQ+ES +TQKA
Sbjct: 702 VQSYMIVLMLTCCILPLAIIILCYLAVWMAIRAVAMQQKESESTQKAEREVSRMVVVMIV 881
Query: 257 XFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMK 316
+CVC+ PY FA + N + +P++F+KSA IYNPIIY FMN+QF+ CIM+
Sbjct: 882 AYCVCWGPYTFFACFAAANPGYAFHPLAAAMPAYFAKSATIYNPIIYVFMNRQFRTCIMQ 1061
Query: 317 MVCGKAMTDESDTCSSQKTEVSTVS 341
+ GK + D S+ S+ KTEVS+V+
Sbjct: 1062LF-GKQVDDGSEV-STSKTEVSSVA 1130
>gb|U97266.1|U97266 Cottocomephorus inermis rod opsin gene, partial cds
Length = 867
Score = 261 bits (667), Expect = 6e-68
Identities = 124/283 (43%), Positives = 176/283 (61%)
Frame = +1
Query: 33 AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF 92
A+ A+M + LIGFP+N + L T+ +KKLR PLNYIL+N++ + +
Sbjct: 19 AYAALGAYMFLLILIGFPVNFLTLYVTIEHKKLRTPLNYILLNLAVANLFMVLGGFTTTM 198
Query: 93 VASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALT 152
S +GYFV GR C LEGF T+ G + WSL LA ER+IV+CKP NFRF+ HA+
Sbjct: 199 YTSMHGYFVLGRLGCNLEGFFATMGGEIALWSLVVLAIERWIVVCKPISNFRFTEDHAIM 378
Query: 153 VVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVP 212
+ TW + + ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++FI F+ P
Sbjct: 379 GLAFTWVMALSCAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVIYMFIVHFLTP 558
Query: 213 LSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYM 272
L +I F Y +LL A+K AA QQES TTQ+A F +C++PYA+ A Y+
Sbjct: 559 LIIISFCYGRLLCAVKEAAAAQQESETTQRAEREVSRMVVMMVISFLMCWLPYASVAWYI 738
Query: 273 VNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
N+ +T+P+FF+KS+ IYNP+IY MNKQF+ C++
Sbjct: 739 FCNQGSEFGPIFMTLPAFFAKSSAIYNPLIYICMNKQFRHCMI 867
>dbj|AB043891.1|AB043891 Cynops pyrrhogaster cp-L mRNA for visual pigment, complete cds
Length = 3981
Score = 258 bits (660), Expect = 4e-67
Identities = 130/329 (39%), Positives = 191/329 (57%)
Frame = +1
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W + L +M V N +VLVAT+++KKLR PLN+ILVN++
Sbjct: 238 GPFEGPNYHIAPRWVYNLTTLWMFFVVAASVFTNGLVLVATMKFKKLRHPLNWILVNLAI 417
Query: 79 GGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
+ + + GYF+ G +C +EG+ +V G+ WSL +A+ER+ V+CK
Sbjct: 418 ADIAETLIASTISVINQIFGYFILGHPLCVIEGYTVSVCGITGLWSLTIIAWERWFVVCK 597
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
PFGN +F K A ++ +W PP FGWSR+ P GL+ SCGPD ++ + +
Sbjct: 598 PFGNIKFDGKLAAAGIIFSWAWAAFWCAPPIFGWSRYWPHGLKTSCGPDVFSGNSDPGVQ 777
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
S+ L C I+PLS+I Y Q+ A++ VA QQ+ES +TQKA +
Sbjct: 778 SFMITLMSTCCILPLSIIILCYVQVWWAIRQVAMQQKESESTQKAEREVSRMVVVMIMAY 957
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
C+ PY F + N + ++P++F+KSA IYNPIIY FMN+QF+ CI ++
Sbjct: 958 IFCWGPYTFFVCFAAANPGYSFHPLAASLPAYFAKSATIYNPIIYVFMNRQFRNCIYQLF 1137
Query: 319 CGKAMTDESDTCSSQKTEVSTVSSTQVGP 347
GK + D S+ SS +TEVS+VS++ V P
Sbjct: 1138-GKKVDDGSELSSSSRTEVSSVSNSSVSP 1221
>gb|U97269.1|U97269 Procottus jettelesi rod opsin gene, partial cds
Length = 867
Score = 258 bits (659), Expect = 5e-67
Identities = 124/290 (42%), Positives = 181/290 (61%)
Frame = +1
Query: 26 YHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCI 85
Y ++P A+ A+M + L+GFP+N + L TL +KKLR PLNYIL+N++ + +
Sbjct: 1 YLVSPA-AYAALGAYMFLLILVGFPVNFLTLYVTLDHKKLRTPLNYILLNLAVADLFMVL 177
Query: 86 FSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRF 145
S +GYFV GR C LEGF T+ G + WSL LA ER+IV+CKP NFRF
Sbjct: 178 GGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVCKPISNFRF 357
Query: 146 SSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF 205
+ HA+ + +W + + ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++F
Sbjct: 358 TEDHAIMGLAFSWVMALTCAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNTESFVLYMF 537
Query: 206 IFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPY 265
F++PLS+I F Y +LL A+K AA QQES TTQ+A F VC++PY
Sbjct: 538 TVHFLIPLSVIFFCYGRLLCAVKEAAAAQQESETTQRAEKEVSRMVVLMVIGFLVCWLPY 717
Query: 266 AAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
A+ A ++ N+ +T+P+FF+K++ IYNP+IY MNKQF+ C++
Sbjct: 718 ASVAWWIFCNQGSEFGPIFMTLPAFFAKTSAIYNPLIYICMNKQFRHCMI 867
>gb|AF137208.1|AF137208 Amia calva rhodopsin (Rhod) gene, partial cds
Length = 858
Score = 258 bits (659), Expect = 5e-67
Identities = 120/286 (41%), Positives = 174/286 (59%)
Frame = +1
Query: 29 APVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSV 88
A W + AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++ + I
Sbjct: 1 ADPWKYSALAAYMFFLIITGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVIGGF 180
Query: 89 FPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSK 148
S +GYF+FG C LEG+ T+ G + WSL LA ERYIV+CKP NFRF
Sbjct: 181 TTTMYTSMHGYFIFGHTGCNLEGYFATLGGEIGLWSLVVLAVERYIVVCKPMSNFRFGEN 360
Query: 149 HALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFC 208
HA+ V+ TW + + PP GWSR+IPEG+QCSCG D+YT+ + +ES+ ++FI
Sbjct: 361 HAIMGVVFTWIMANSCAAPPLLGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFIVH 540
Query: 209 FIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAF 268
F +P +I F Y +L+ +K AAQQQES TTQ+A + +C++PYA+
Sbjct: 541 FSIPFIVIFFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVLMVISYLICWIPYASV 720
Query: 269 AMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
A Y+ ++ +TIP+FF+KS+ +YNP+IY +NKQF+ C+
Sbjct: 721 AWYIFTHKGSSFGPVFMTIPAFFAKSSALYNPLIYVCLNKQFRQCM 858
>gb|AF137210.1|AF137210 Pantodon buchholzi rhodopsin (Rhod) gene, partial cds
Length = 861
Score = 258 bits (659), Expect = 5e-67
Identities = 120/287 (41%), Positives = 174/287 (59%)
Frame = +1
Query: 29 APVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSV 88
A W + AA+M + + GFP+N + L T+ +KKLR PLNYIL+N++ + I
Sbjct: 1 AEPWKYSALAAYMFFLIITGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVIGGF 180
Query: 89 FPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSK 148
S +GYFVFG C +E F T G + WSL LA ER++V+CKP NFRF
Sbjct: 181 TTTMYTSMHGYFVFGTTGCNIEAFFATTGGEIALWSLVVLAVERWMVVCKPVSNFRFGEN 360
Query: 149 HALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFC 208
HA+ V TW + S+PP FGWSR+IPEG+QCSCG D+YT+ + + S+ ++FI
Sbjct: 361 HAIMGVAFTWIMACSCSVPPLFGWSRYIPEGMQCSCGVDYYTMKPEVNNYSFVIYMFIVH 540
Query: 209 FIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAF 268
F +PL ++ F Y +L+ +K AAQQQES TTQ+A F VC++PYA+
Sbjct: 541 FTIPLIVVFFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWIPYASV 720
Query: 269 AMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
A Y+ ++ +T+P+FF+KS+ +YNP++Y MNKQF+ C++
Sbjct: 721 AFYIFTHQGSEFGPVFMTLPAFFAKSSALYNPLMYICMNKQFRKCML 861
>gb|U97274.1|U97274 Comephorus dybowskii rod opsin gene, partial cds
Length = 867
Score = 258 bits (658), Expect = 7e-67
Identities = 124/283 (43%), Positives = 176/283 (61%)
Frame = +1
Query: 33 AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF 92
A+ A+M + LIGFP+N + L TL +KKLR PLNYIL+N++ + +
Sbjct: 19 AYAALGAYMFLLILIGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVLGGFTTTM 198
Query: 93 VASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALT 152
S +GYFV GR C LEGF T+ G + WSL LA ER+IV+CKP NFRF+ HA+
Sbjct: 199 YTSMHGYFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVCKPISNFRFTEDHAIM 378
Query: 153 VVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVP 212
+ +W + + S+PP GWSR+IPE +QCSCG D+YT + +ES+ ++F F++P
Sbjct: 379 GLAFSWVMALSCSVPPLVGWSRYIPEAMQCSCGVDYYTRAEGFNTESFVLYMFTVHFLIP 558
Query: 213 LSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYM 272
LS+I F Y +LL A+K AA QQES TTQ++ F VC++PYA+ A ++
Sbjct: 559 LSVIFFCYGRLLCAVKEAAAAQQESETTQRSEKEVSRMVVLMVIGFLVCWLPYASTAWWI 738
Query: 273 VNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
N+ +TIP+FF+KS+ IYNP+IY MNKQF+ C++
Sbjct: 739 FCNQGSEFGPVFMTIPAFFAKSSAIYNPMIYICMNKQFRHCMI 867
>dbj|AB001604.1|AB001604 Oryzias latipes mRNA for KFH-R, complete cds
Length = 1277
Score = 257 bits (656), Expect = 1e-66
Identities = 131/325 (40%), Positives = 195/325 (59%), Gaps = 3/325 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++GP YHIAP W + L +M V ++ N +VLVAT ++KKLR PLN+IL N++
Sbjct: 162 PFEGPNYHIAPRWVYNLATLWMFFVVVLSVFTNGLVLVATAKFKKLRHPLNWILSNLAIA 341
Query: 80 GFLLCIFSVFPVFVASCN---GYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVI 136
+VF ++ CN GYF+ G +C EG++ + G+ WSL +++ER++V+
Sbjct: 342 DLGE---TVFASTISVCNQFFGYFILGHPMCVFEGYVVSTCGIAALWSLTIISWERWVVV 512
Query: 137 CKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYR 196
CKPFGN +F +K A+ ++ +W PP FGWSR+ P GL+ SCGPD ++
Sbjct: 513 CKPFGNVKFDAKWAIGGIVFSWVWSAVWCAPPVFGWSRYWPHGLKTSCGPDVFSGSDDPG 692
Query: 197 SESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXX 256
+SY L I C I+PL++I Y + A++AVA QQ+ES +TQKA
Sbjct: 693 VQSYMIVLMITCCIIPLAIIILCYLAVWLAIRAVAMQQKESESTQKAEREVSRMVVVMIV 872
Query: 257 XFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMK 316
+CVC+ PY FA + N + +P++F+KSA IYNP+IY FMN+QF+ CIM+
Sbjct: 873 AYCVCWGPYTFFACFAAANPGYAFHPLAAAMPAYFAKSATIYNPVIYVFMNRQFRTCIMQ 1052
Query: 317 MVCGKAMTDESDTCSSQKTEVSTVS 341
+ GK + D S+ S+ KTEVS+V+
Sbjct: 1053LF-GKQVDDGSEV-STSKTEVSSVA 1121
>dbj|AB055656.1|AB055656 Cyprinus carpio mRNA for red-sensitive opsin, complete cds
Length = 1703
Score = 256 bits (655), Expect = 2e-66
Identities = 131/338 (38%), Positives = 197/338 (57%), Gaps = 1/338 (0%)
Frame = +3
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
+ E +++ N ++ P++GP YHIAP W + L +M V + N +VLVAT ++K
Sbjct: 150 TRETMFVYTNSNNTRDPFEGPNYHIAPRWVYNLATVWMFFVVIASTFTNGLVLVATAKFK 329
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + + GYF+ G +C EG+ +V G+ W
Sbjct: 330 KLRHPLNWILVNLAIADLAETLLASTISVINQIFGYFILGHPMCIFEGYTVSVCGIAGLW 509
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SL +++ER++V+CKPFGN +F +K A ++ +W PP FGWSRF P GL+ S
Sbjct: 510 SLTVISWERWVVVCKPFGNVKFDAKWASAGIIFSWVWSAFWCAPPIFGWSRFWPHGLKTS 689
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ +SY L I C I+PL++I Y + A++AVA QQ++S +TQKA
Sbjct: 690 CGPDVFSGSEDPGVQSYMIVLMITCCIIPLAIIILCYIAVWLAIRAVAQQQKDSESTQKA 869
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+C C+ PY FA + N + +P++F+KSA IYNPIIY
Sbjct: 870 EKEVSRMVVVMIFAYCFCWGPYTFFACFAAANPGYAFHPLAAAMPAYFAKSATIYNPIIY 1049
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
FMN+QF+ CIM++ GK + D S+ S+ KTEVS+V+
Sbjct: 1050VFMNRQFRVCIMQLF-GKKVDDGSEV-STSKTEVSSVA 1157
>gb|U97267.1|U97267 Batrachocottus multiradiatus rod opsin gene, partial cds
Length = 867
Score = 256 bits (653), Expect = 3e-66
Identities = 126/290 (43%), Positives = 179/290 (61%)
Frame = +1
Query: 26 YHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCI 85
Y ++P A+ A+M + LIGFP+N + L TL +KKLR PLNYIL+N++ + +
Sbjct: 1 YLVSPA-AYAALGAYMFLLILIGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVL 177
Query: 86 FSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRF 145
S +GYFV GR C LEGF T+ G + WSL LA ER+IV+CKP NFRF
Sbjct: 178 GGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVCKPISNFRF 357
Query: 146 SSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF 205
+ +A+ + +W + + ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++F
Sbjct: 358 TEDNAIMGLAFSWVMALTCAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVIYMF 537
Query: 206 IFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPY 265
I F +PLS+I F Y +LL A+K AA QQES TTQ+A F VC++PY
Sbjct: 538 IVHFPIPLSVIFFCYGRLLCAVKEAAAAQQESETTQRAEKEVSRMVVILVIGFLVCWLPY 717
Query: 266 AAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
A+ A ++ N+ +T+PSFF+K IYNP+IY MNKQF+ C++
Sbjct: 718 ASVAWWIFCNQGSDFGPIFMTLPSFFAKRPAIYNPMIYICMNKQFRHCMI 867
>gb|AF109371.1|AF109371 Danio rerio red-sensitive opsin (rdops) mRNA, complete cds
Length = 1725
Score = 254 bits (650), Expect = 6e-66
Identities = 129/338 (38%), Positives = 196/338 (57%), Gaps = 1/338 (0%)
Frame = +3
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
+ E + + N ++ P++GP YHIAP W + + +M V + N +VLVAT ++K
Sbjct: 168 TREAMFTYTNSNNTKDPFEGPNYHIAPRWVYNVATVWMFFVVVASTFTNGLVLVATAKFK 347
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ +F+ + GYF+ G +C EG+ +V G+ W
Sbjct: 348 KLRHPLNWILVNLAIADLGETLFASTISVINQFFGYFILGHPMCIFEGYTVSVCGIAALW 527
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SL +++ER++V+CKPFGN +F +K A ++ +W PP FGWSR+ P GL+ S
Sbjct: 528 SLTVISWERWVVVCKPFGNVKFDAKWASAGIIFSWVWAAAWCAPPIFGWSRYWPHGLKTS 707
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ +SY L I C I+PL++I Y + A+ AVA QQ++S +TQKA
Sbjct: 708 CGPDVFSGSEDPGVQSYMVVLMITCCIIPLAIIILCYIAVYLAIHAVAQQQKDSESTQKA 887
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+C C+ PY FA + N + +P++F+KSA IYNP+IY
Sbjct: 888 EKEVSRMVVVMIFAYCFCWGPYTFFACFAAANPGYAFHPLAAAMPAYFAKSATIYNPVIY 1067
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
FMN+QF+ CIM++ GK + D S+ S+ KTEVS+V+
Sbjct: 1068VFMNRQFRVCIMQLF-GKKVDDGSEV-STSKTEVSSVA 1175
>gb|U97265.1|U97265 Cottocomephorus grewingki rod opsin gene, partial cds
Length = 867
Score = 253 bits (646), Expect = 2e-65
Identities = 121/283 (42%), Positives = 174/283 (60%)
Frame = +1
Query: 33 AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF 92
A+ A+M + L+GFP+N + L TL +KKLR PLNYIL+N++ + +
Sbjct: 19 AYAAPGAYMFLLILVGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVLGGFTTTM 198
Query: 93 VASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALT 152
S +GYFV GR C LEGF T+ G + WSL LA ER+IV+CKP NFRF+ HA+
Sbjct: 199 YTSMHGYFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVCKPISNFRFTEDHAIM 378
Query: 153 VVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVP 212
+ +W + + ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++FI F++P
Sbjct: 379 GLAFSWVMALTCAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVIYMFIVHFLIP 558
Query: 213 LSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYM 272
LS F Y +LL A+K AA QQES TTQ+A F +C++PYA+ A Y+
Sbjct: 559 LSNNFFCYGRLLCAVKEAAAAQQESETTQRAEREVSRMVVMMVVSFLMCWLPYASVAWYI 738
Query: 273 VNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
N+ +T+P+FF+KS+ IYNP+IY MNK + C++
Sbjct: 739 FCNQGSEFGPIFMTLPAFFAKSSAIYNPLIYICMNKHVRHCMI 867
>gb|AF137212.1|AF137212 Balistes sp. rhodopsin (Rhod) gene, partial cds
Length = 846
Score = 252 bits (644), Expect = 3e-65
Identities = 119/279 (42%), Positives = 172/279 (60%)
Frame = +1
Query: 33 AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF 92
A+ A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++ +
Sbjct: 7 AYAALGAYMFLLILLGFPINFLTLYVTIEHKKLRTPLNYILLNLAVANLFMVFGGFTTTM 186
Query: 93 VASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALT 152
S +GYFV GR C LEGF T+ G ++ WSL LA ER++V+CKP NFRF HA+
Sbjct: 187 YTSMHGYFVLGRLGCNLEGFFATLGGEISLWSLVVLAIERWVVVCKPISNFRFGENHAIM 366
Query: 153 VVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVP 212
+ TW + ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++F+ F+ P
Sbjct: 367 GLAFTWFMASACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVVYMFVCHFLTP 546
Query: 213 LSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYM 272
L+++ F Y +LL A+K AA QQES TTQ+A F VC++PYA+ A ++
Sbjct: 547 LTVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIGFLVCWLPYASVAWFI 726
Query: 273 VNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQ 311
++ +TIP+FF+KS+ IYNP+IY MNKQF+
Sbjct: 727 FTHQGSEFGPVFMTIPAFFAKSSAIYNPMIYICMNKQFR 843
>gb|U97268.1|U97268 Batrochocottus nicolskii rod opsin gene, partial cds
Length = 867
Score = 252 bits (643), Expect = 4e-65
Identities = 123/290 (42%), Positives = 178/290 (60%)
Frame = +1
Query: 26 YHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCI 85
Y ++P A+ A+M + LIGFP+N + L TL +KKLR PLNYIL+N++ + +
Sbjct: 1 YLVSPA-AYAALGAYMFLLILIGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVL 177
Query: 86 FSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRF 145
S +GYFV GR C LEGF T+ G + WSL LA ER+IV+CKP FRF
Sbjct: 178 GGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVCKPISKFRF 357
Query: 146 SSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF 205
+ +A+ + +W + + ++PP GW R+IPEG+QC+CG D+YT + +ES+ ++F
Sbjct: 358 TEDNAIMGLAFSWVMALACAVPPLVGWLRYIPEGMQCTCGVDYYTRAEGFDNESFVIYMF 537
Query: 206 IFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPY 265
I F++PLS+I F Y +LL A+K AA QQES TTQ+A F VC++PY
Sbjct: 538 IVHFLIPLSVIFFCYGRLLCAVKEAAAAQQESETTQRAEKEVSRMVVIMVIGFLVCWLPY 717
Query: 266 AAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
A+ A ++ N+ +T+PSFF+K IYNP+IY MNKQF+ C++
Sbjct: 718 ASVAWWIFCNQGSDFGPIFMTLPSFFAKRPAIYNPMIYICMNKQFRHCMI 867
>gb|U97270.1|U97270 Limnocottus bergianus rod opsin gene, partial cds
Length = 867
Score = 251 bits (640), Expect = 9e-65
Identities = 122/277 (44%), Positives = 171/277 (61%)
Frame = +1
Query: 39 AFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNG 98
A+M + LIG P+N + L TL +KKLR PLNYIL+N++ + + S +G
Sbjct: 37 AYMFLLILIGSPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVLGGFTTTMYTSMHG 216
Query: 99 YFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATW 158
Y V GR C LEGF T+ G + WSL LA ER+IV+CKP NFRF+ HA+ + +W
Sbjct: 217 YSVLGRLGCILEGFFATLGGEIALWSLVVLAIERWIVVCKPISNFRFTEDHAIMGLAFSW 396
Query: 159 TIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICF 218
+ + ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++FI F++PLS+I F
Sbjct: 397 VMALACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVIYMFIVHFLIPLSVIFF 576
Query: 219 SYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNH 278
Y +LL A+K AA QQES TTQ+ F VC +P A+ A ++ N+
Sbjct: 577 CYGRLLCAVKEAAAAQQESETTQRPEKEVTRMVVIMVIAFLVCCLPNASVAWWIFCNQGS 756
Query: 279 GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
+T+PSFF+KSA IYNP+IY MNKQF+ C++
Sbjct: 757 DFGPIFMTLPSFFAKSAAIYNPMIYICMNKQFRHCMI 867
>gb|L11867.1|CRARED Carassius auratus red cone opsin mRNA, complete cds
Length = 2032
Score = 251 bits (640), Expect = 9e-65
Identities = 130/338 (38%), Positives = 194/338 (56%), Gaps = 1/338 (0%)
Frame = +1
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
+ E +++ N ++ P++GP YHIAP W + L +M V + N +VLVAT ++K
Sbjct: 139 TRESMFVYTNSNNTRDPFEGPNYHIAPRWVYNLATVWMFFVVVASTFTNGLVLVATAKFK 318
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ + + GYF+ G +C EGF +V G+ W
Sbjct: 319 KLRHPLNWILVNLAVADLAETLLASTISVTNQFFGYFILGHPMCIFEGFTVSVCGIAGLW 498
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SL +++ER++V+CKPFGN +F +K A ++ +W PP FGWSRF P GL+ S
Sbjct: 499 SLTVISWERWVVVCKPFGNVKFDAKWASAGIIFSWVWSAIWCAPPIFGWSRFWPHGLKTS 678
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ +SY L I C I+PL++I Y + A++ VA QQ++S +TQKA
Sbjct: 679 CGPDVFSGSEDPGVQSYMIVLMITCCIIPLAIIILCYIAVWLAIRTVAQQQKDSESTQKA 858
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+C C+ PY A + N + +P++F+KSA IYNPIIY
Sbjct: 859 EKEVSRMVVVMIFAYCFCWGPYTFCACFAAANPGYAFHPLAAAMPAYFAKSATIYNPIIY 1038
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
FMN+QF+ CIM++ GK + D S+ S+ KTEVS+V+
Sbjct: 1039VFMNRQFRVCIMQLF-GKKVDDGSEV-STSKTEVSSVA 1146
>gb|AF104904.1|AF104904 Danio rerio red opsin mRNA, partial cds
Length = 1721
Score = 251 bits (640), Expect = 9e-65
Identities = 129/338 (38%), Positives = 196/338 (57%), Gaps = 1/338 (0%)
Frame = +3
Query: 5 SEEEFYLFKNISSV-GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYK 63
+ E + + N ++ P++GP YHIAP W + + +M V + N +VLVAT ++K
Sbjct: 165 TREAMFTYTNSNNTKDPFEGPNYHIAPRWVYNVATVWMFFVVVASTFTNGLVLVATAKFK 344
Query: 64 KLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGW 123
KLR PLN+ILVN++ +F+ + GYF+ G +C EG+ +V G+ W
Sbjct: 345 KLRHPLNWILVNLAIADLGETLFASTISVINQFFGYFILGHPMCIFEGYTVSVCGIAALW 524
Query: 124 SLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCS 183
SL +++ER++V+CKPFGN +F +K A ++ +W PP FGWSR+ P GL+ S
Sbjct: 525 SLTVISWERWVVVCKPFGNVKFDAKWASAGIIFSWVWAAAWCAPPIFGWSRYWPHGLKTS 704
Query: 184 CGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKA 243
CGPD ++ +SY L I C I+PL++I Y + A+ AVA QQ++S +TQKA
Sbjct: 705 CGPDVFSGSEDPGVQSYMVVLMITCCIIPLAIIILCYIAVYLAIHAVAQQQKDSESTQKA 884
Query: 244 XXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIY 303
+C C+ PY FA + N + +P++F+KSA IYNP+IY
Sbjct: 885 EKEVSRMVVVMIFAYCFCWGPY-TFACFAAANPGYAFHPLAAAMPAYFAKSATIYNPVIY 1061
Query: 304 CFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVS 341
FMN+QF+ CIM++ GK + D S+ S+ KTEVS+V+
Sbjct: 1062VFMNRQFRVCIMQLF-GKKVDDGSEV-STSKTEVSSVA 1169
>emb|AJ224691.1|MNAJ4691 Malacosteus niger gene encoding rod opsin, partial cds
Length = 955
Score = 249 bits (636), Expect = 3e-64
Identities = 122/301 (40%), Positives = 179/301 (58%), Gaps = 1/301 (0%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P++ PQY++ A+ L ++M + FP+N + L T+ +KKLR LNYIL+N++
Sbjct: 51 PYESPQYYLVDPAAYSLLGSYMLFIIFTSFPINFLTLYVTIEHKKLRTALNYILLNLAVA 230
Query: 80 GFLLCIFSVFPVFVASC-NGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
L +F F V +C GYFV GR C LEGF T G + WSL LA ER++V+CK
Sbjct: 231 N-LFMVFGGFTTTVYTCMKGYFVLGRLGCNLEGFFATSGGEIALWSLVVLAIERFLVVCK 407
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
P NFRF+ KHAL + +W + S+PP GWSR+IPEG Q +CG D+YT Y ++
Sbjct: 408 PIENFRFTEKHALVGLAFSWIMAASCSVPPLCGWSRYIPEGFQVACGIDYYTRAKGYNNK 587
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
S+ +++ FI+PL ++ + Y +LL A+K AA QQES TTQ+A +
Sbjct: 588 SFVVYMYSMHFIIPLCIMIYCYGRLLWAVKRAAAAQQESETTQRAEREVTFLVVLMMFSY 767
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV 318
V +VPYA A Y+ ++ + IP FF+KS+ ++NP+IY MNKQF+ C++ +
Sbjct: 768 LVTWVPYATVAWYIYRHQGSSFGPVFMGIPIFFAKSSALFNPVIYICMNKQFRHCMITTL 947
Query: 319 C 319
C
Sbjct: 948 C 950
>gb|U97264.1|U97264 Paracottus kneri rod opsin gene, partial cds
Length = 867
Score = 248 bits (633), Expect = 6e-64
Identities = 121/290 (41%), Positives = 178/290 (60%)
Frame = +1
Query: 26 YHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCI 85
Y ++P A+ A+M + L+GFP+N + L TL +KKLR PLNYIL+N++ + +
Sbjct: 1 YLVSPA-AYAALGAYMFLLILVGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVL 177
Query: 86 FSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRF 145
S +GYFV GR C LEGF T+ G + WSL LA ER+IV+ KP NFRF
Sbjct: 178 GGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVRKPISNFRF 357
Query: 146 SSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF 205
+ HA+ + +W + ++PP GW R+IPEG+QCSCG D+YT + +ES+ ++F
Sbjct: 358 TEDHAIMGLGFSWVMASTCAVPPLVGWLRYIPEGMQCSCGVDYYTRAEGFNTESFVLYMF 537
Query: 206 IFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPY 265
F++PLS+I F Y +LL A+K AA QQES TTQ+A + VC++PY
Sbjct: 538 TVHFLIPLSVIFFCYGRLLCAVKEAAAAQQESETTQRAEKEVSRMVVIMVIGYLVCWLPY 717
Query: 266 AAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
A+ A ++ N+ +T+P+FF+K++ IYNP+IY MNKQF+ C++
Sbjct: 718 ASVAWWIFCNQGSEFGPIFMTLPAFFAKTSAIYNPLIYICMNKQFRHCMI 867
>gb|AF137215.1|AF137215 Mola mola rhodopsin (Rhod) gene, partial cds
Length = 843
Score = 248 bits (633), Expect = 6e-64
Identities = 118/279 (42%), Positives = 170/279 (60%)
Frame = +1
Query: 33 AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF 92
A+ A M + L+GFP+N + L T+ +KKLR PLNYIL+N++ +
Sbjct: 7 AYAALGANMFLLILLGFPINFLTLYVTIEHKKLRTPLNYILLNLAVANLFMVFGGFTTTM 186
Query: 93 VASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALT 152
S +GYFV GR C LEGF T+ G ++ WSL LA ER++V+CKP NFRF+ HA+
Sbjct: 187 YTSMHGYFVLGRLGCNLEGFFATLGGEISLWSLVVLAIERWVVVCKPISNFRFTENHAIM 366
Query: 153 VVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVP 212
+ TW + ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++F+ F+ P
Sbjct: 367 GLAFTWVMASACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVVYMFVCHFMTP 546
Query: 213 LSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYM 272
L+++ F Y +LL A+K AA QQES TTQ+A F C++PYA A ++
Sbjct: 547 LTIVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIAFLSCWLPYACVAWWI 726
Query: 273 VNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQ 311
++ +TIP+FF+KS+ IYNP+IY FM KQF+
Sbjct: 727 FTHQGSEFGPVFMTIPAFFAKSSAIYNPMIYIFMIKQFR 843
>gb|AF137213.1|AF137213 Ostracion sp. rhodopsin (Rhod) gene, partial cds
Length = 825
Score = 247 bits (631), Expect = 1e-63
Identities = 118/275 (42%), Positives = 167/275 (59%)
Frame = +1
Query: 34 FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFV 93
F A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++ +
Sbjct: 1 FAALGAYMFLLILLGFPINFLTLYVTIEHKKLRTPLNYILLNLAVANLFMVFGGFTTTMY 180
Query: 94 ASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTV 153
S +GYFV GR C LEGF T+ G + WSL LA ER++V+CKP NFRF HA+
Sbjct: 181 TSMHGYFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWMVVCKPISNFRFGENHAIMG 360
Query: 154 VLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPL 213
+ TW + ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++FI F++PL
Sbjct: 361 LAFTWLMASACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVVYMFICHFLIPL 540
Query: 214 SLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMV 273
+++ F Y +LL A+K AA QQES TTQ+A F VC++PYA A ++
Sbjct: 541 TVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIAFLVCWLPYAGVAWWIF 720
Query: 274 NNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNK 308
++ +TIP+FF+KS+ IYNP+IY MNK
Sbjct: 721 THQGSEFGPVFMTIPAFFAKSSSIYNPMIYICMNK 825
>gb|U53874.1|HSU53874 Human blue cone pigment gene, complete cds
Length = 3270
Score = 246 bits (629), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL
Sbjct: 11 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 190
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG
Sbjct: 191 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 364
Score = 137 bits (346), Expect = 1e-30
Identities = 69/90 (76%), Positives = 70/90 (77%)
Frame = +2
Query: 225 RALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRL 284
RA VAAQQQESATTQKA FCVCYVPYAAFAMYMVNNRNHGLDLRL
Sbjct: 1895 RAPPQVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRL 2074
Query: 285 VTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
VTIPSFFSKSACIYNPIIYCFMNKQ + I
Sbjct: 2075 VTIPSFFSKSACIYNPIIYCFMNKQVKLFI 2164
Score = 126 bits (317), Expect = 2e-27
Identities = 57/58 (98%), Positives = 58/58 (99%)
Frame = +1
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVA 231
RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAV+
Sbjct: 1135 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVS 1308
Score = 123 bits (308), Expect = 3e-26
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +1
Query: 118 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR 174
GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR
Sbjct: 646 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR 816
Score = 85.9 bits (211), Expect = 5e-15
Identities = 40/44 (90%), Positives = 43/44 (96%)
Frame = +1
Query: 305 FMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
+++ QFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN
Sbjct: 3124 YLSLQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 3255
>gb|L32835.1|HUMBCOP Homo sapiens blue cone opsin gene, complete cds
Length = 3902
Score = 246 bits (629), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL
Sbjct: 410 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 589
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG
Sbjct: 590 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 763
Score = 134 bits (337), Expect = 1e-29
Identities = 68/90 (75%), Positives = 69/90 (76%)
Frame = +1
Query: 225 RALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRL 284
RA VAAQQQESATTQKA FCVCYV YAAFAMYMVNNRNHGLDLRL
Sbjct: 2296 RAPPQVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVXYAAFAMYMVNNRNHGLDLRL 2475
Query: 285 VTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
VTIPSFFSKSACIYNPIIYCFMNKQ + I
Sbjct: 2476 VTIPSFFSKSACIYNPIIYCFMNKQVKLFI 2565
Score = 126 bits (317), Expect = 2e-27
Identities = 57/58 (98%), Positives = 58/58 (99%)
Frame = +2
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVA 231
RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAV+
Sbjct: 1535 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVS 1708
Score = 123 bits (308), Expect = 3e-26
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +1
Query: 118 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR 174
GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR
Sbjct: 1045 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR 1215
Score = 85.9 bits (211), Expect = 5e-15
Identities = 40/44 (90%), Positives = 43/44 (96%)
Frame = +2
Query: 305 FMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
+++ QFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN
Sbjct: 3524 YLSLQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 3655
>gb|AC024952.4|AC024952 Homo sapiens chromosome 7 clone RP11-66F23, complete sequence
Length = 182426
Score = 246 bits (629), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = -2
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL
Sbjct: 60247 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60068
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG
Sbjct: 60067 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 59894
Score = 137 bits (346), Expect = 1e-30
Identities = 69/90 (76%), Positives = 70/90 (77%)
Frame = -2
Query: 225 RALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRL 284
RA VAAQQQESATTQKA FCVCYVPYAAFAMYMVNNRNHGLDLRL
Sbjct: 58360 RAPPQVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRL 58181
Query: 285 VTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
VTIPSFFSKSACIYNPIIYCFMNKQ + I
Sbjct: 58180 VTIPSFFSKSACIYNPIIYCFMNKQVKLFI 58091
Score = 126 bits (317), Expect = 2e-27
Identities = 57/58 (98%), Positives = 58/58 (99%)
Frame = -2
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVA 231
RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAV+
Sbjct: 59122 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVS 58949
Score = 123 bits (308), Expect = 3e-26
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = -1
Query: 118 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR 174
GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR
Sbjct: 59612 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR 59442
Score = 85.9 bits (211), Expect = 5e-15
Identities = 40/44 (90%), Positives = 43/44 (96%)
Frame = -1
Query: 305 FMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
+++ QFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN
Sbjct: 57131 YLSLQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 57000
>gb|AF039433.1|PTBOG1 Pan troglodytes blue opsin gene, exon 1
Length = 481
Score = 246 bits (629), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +3
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL
Sbjct: 75 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 254
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG
Sbjct: 255 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 428
>gb|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B21, complete sequence
Length = 176875
Score = 246 bits (629), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +1
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL
Sbjct: 12343 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 12522
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG
Sbjct: 12523 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 12696
Score = 137 bits (346), Expect = 1e-30
Identities = 69/90 (76%), Positives = 70/90 (77%)
Frame = +3
Query: 225 RALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRL 284
RA VAAQQQESATTQKA FCVCYVPYAAFAMYMVNNRNHGLDLRL
Sbjct: 14229 RAPPQVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRL 14408
Query: 285 VTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
VTIPSFFSKSACIYNPIIYCFMNKQ + I
Sbjct: 14409 VTIPSFFSKSACIYNPIIYCFMNKQVKLFI 14498
Score = 126 bits (317), Expect = 2e-27
Identities = 57/58 (98%), Positives = 58/58 (99%)
Frame = +1
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVA 231
RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAV+
Sbjct: 13468 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVS 13641
Score = 121 bits (303), Expect = 1e-25
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +3
Query: 118 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWS 173
GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWS
Sbjct: 12978 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWS 13145
Score = 85.9 bits (211), Expect = 5e-15
Identities = 40/44 (90%), Positives = 43/44 (96%)
Frame = +2
Query: 305 FMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
+++ QFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN
Sbjct: 15458 YLSLQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 15589
>gb|M13295.1|HUMCNPB1 Human blue cone photoreceptor pigment gene, exon 1
Length = 771
Score = 246 bits (629), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL
Sbjct: 410 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 589
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG
Sbjct: 590 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 763
>gb|AF039429.1|PPBOG1 Pan paniscus blue opsin gene, exon 1
Length = 352
Score = 244 bits (623), Expect = 8e-63
Identities = 117/117 (100%), Positives = 117/117 (100%)
Frame = +1
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL
Sbjct: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 180
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVA 117
RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVA
Sbjct: 181 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVA 351
>gb|U97275.1|U97275 Taurulus bubalis rod opsin gene, partial cds
Length = 861
Score = 244 bits (622), Expect = 1e-62
Identities = 118/277 (42%), Positives = 169/277 (60%)
Frame = +1
Query: 39 AFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNG 98
A+M + L+GFP+N + L TL +KKLR PLNYIL+N++ + + S +G
Sbjct: 31 AYMFLLILVGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVLGGFTTTMYTSAHG 210
Query: 99 YFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATW 158
YFV GR C +EGF T+ G + WSL LA ER+IV+CKP NFRF+ +HA+ + W
Sbjct: 211 YFVLGRLGCNVEGFFATLGGEIALWSLVVLAVERWIVVCKPISNFRFTEEHAIMGLGFNW 390
Query: 159 TIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICF 218
+ ++PP GWSR+IPEG+QCSCG ++YT + +ES + I F++PL +I F
Sbjct: 391 VMASACAVPPLVGWSRYIPEGMQCSCGINYYTRSEGFNNESLVMKMLICHFLIPLFVIFF 570
Query: 219 SYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNH 278
Y ++L A+K AA QQES TTQ+A F VC++PYA+ A Y+ N+
Sbjct: 571 CYGRMLCAVKEAAAAQQESETTQRAEREVSRMVVIMVISFLVCWLPYASVAWYIFCNQGS 750
Query: 279 GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
+T+P+FF+KSA IYNP+IY MNK + C++
Sbjct: 751 EFGPVFMTLPAFFAKSASIYNPLIYICMNKHSRHCMI 861
>gb|AF137211.1|AF137211 Gadus morhua rhodopsin (Rhod) gene, partial cds
Length = 825
Score = 243 bits (620), Expect = 2e-62
Identities = 118/274 (43%), Positives = 164/274 (59%)
Frame = +1
Query: 33 AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVF 92
A+ AA+M + L+GFP+N + L TL +KKLR PLNYIL+N++ +
Sbjct: 4 AYSALAAYMFLLILLGFPINFLTLYVTLEHKKLRTPLNYILLNMAVANLFMVFGGFTTTM 183
Query: 93 VASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALT 152
S +GYFV GR C +EG+ T+ G + WSL LA ER++V+CKP NFRF HA+
Sbjct: 184 YTSMHGYFVLGRTGCNIEGYFATLGGEIGLWSLVVLAIERWVVVCKPMSNFRFGENHAVM 363
Query: 153 VVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVP 212
V TW + + PP GWSR+IPEG+QCSCG D+YT Y +ES+ ++F F+ P
Sbjct: 364 GVAFTWVMANACAFPPLVGWSRYIPEGMQCSCGVDYYTRAEGYNNESFVIYMFTCHFLTP 543
Query: 213 LSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYM 272
+ +I F Y +LL A+K AA QQES TTQ+A F +C+VPYA+ A Y+
Sbjct: 544 MFVIFFCYGRLLCAVKEAAAAQQESETTQRAEREVSRMVVIMVLGFLICWVPYASVAWYI 723
Query: 273 VNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFM 306
N+ +T+P+FF+KS+ IYNP+IY M
Sbjct: 724 FCNQGSIFGPIFMTLPAFFAKSSSIYNPLIYICM 825
>gb|U97271.1|U97271 Limnocottus pallidus rod opsin gene, partial cds
Length = 867
Score = 243 bits (619), Expect = 2e-62
Identities = 120/277 (43%), Positives = 169/277 (60%)
Frame = +1
Query: 39 AFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNG 98
A+M + LIGFP+N + L TL +KKLR PLNYIL+N++ + + S +G
Sbjct: 37 AYMFLLILIGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVLGGFTTTMYTSMHG 216
Query: 99 YFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATW 158
YFV GR C LEGF T+ G + WSL LA ER+IV KP NFRF+ HA+ + +W
Sbjct: 217 YFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVGLKPIRNFRFTEDHAIMGLAFSW 396
Query: 159 TIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICF 218
+ + ++PP GW R+IPEG+Q SCG D+YT + +ES+ ++F F++PLS+I F
Sbjct: 397 VMALSCAVPPLAGWLRYIPEGIQGSCGVDYYTRAEGFNNESFVIYMFTVHFLIPLSVIFF 576
Query: 219 SYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNH 278
Y +LL A+K AA QQES TTQ+A F VC++PYA+ A ++ N+
Sbjct: 577 CYGRLLCAVKEAAAAQQESETTQRAEKEVSRMVVIMVIGFLVCWLPYASVAWWIFCNQGS 756
Query: 279 GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
+T+PSFF+K IYNP+IY MNKQF+ C++
Sbjct: 757 DFGPIFMTLPSFFAKRPAIYNPMIYICMNKQFRHCMI 867
>gb|AF137214.1|AF137214 Fugu rubripes rhodopsin (Rhod) gene, partial cds
Length = 810
Score = 243 bits (619), Expect = 2e-62
Identities = 115/265 (43%), Positives = 162/265 (60%)
Frame = +1
Query: 39 AFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNG 98
A+M + L+GFP+N + L T+ +KKLR PLNYIL+N++ + S +G
Sbjct: 13 AYMFLLILLGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHG 192
Query: 99 YFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATW 158
YFV GR C LEGF T+ G + WSL LA ER++V+CKP NFRF HA+ + TW
Sbjct: 193 YFVLGRLGCNLEGFFATLGGEIGLWSLVVLAIERWVVVCKPISNFRFGENHAIMGLAFTW 372
Query: 159 TIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICF 218
+ ++PP GWSR+IPEG+QCSCG D+YT + +ES+ ++F+ F++PL +I F
Sbjct: 373 IMASACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVIYMFVCHFLIPLIIIFF 552
Query: 219 SYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNH 278
Y +LL A+K AA QQES TTQ+A F VC++PYA A Y+ ++
Sbjct: 553 CYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVISFLVCWLPYAGVAWYIFTHQGS 732
Query: 279 GLDLRLVTIPSFFSKSACIYNPIIY 303
+TIP+FF+KS+ IYNP+IY
Sbjct: 733 EFGPVFMTIPAFFAKSSSIYNPMIY 807
>gb|AF039425.1|GGBOG1 Gorilla gorilla blue opsin gene, exon 1
Length = 352
Score = 242 bits (618), Expect = 3e-62
Identities = 116/117 (99%), Positives = 116/117 (99%)
Frame = +1
Query: 1 MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 60
MRKMSEEEFYLFKNIS VGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL
Sbjct: 1 MRKMSEEEFYLFKNISPVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATL 180
Query: 61 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVA 117
RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVA
Sbjct: 181 RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVA 351
>emb|AJ277925.1|SCA277925 Serinus canaria partial mRNA for LW-sensitive opsin (ops4 gene)
Length = 903
Score = 241 bits (615), Expect = 7e-62
Identities = 122/292 (41%), Positives = 171/292 (57%)
Frame = +1
Query: 19 GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 78
GP++GP YHIAP W + L + +M V + N +VLVAT ++KKLR PLN+ILV +S
Sbjct: 31 GPFEGPNYHIAPRWVYNLTSLWMIFVVVASVFTNGLVLVATAKFKKLRHPLNWILVKLSV 210
Query: 79 GGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICK 138
+ + V GYF+ G +C +EG+ + G+ WSLA +++ER+ V+CK
Sbjct: 211 AELGETVIASTISVVNQIFGYFILGHPMCVIEGYTVSACGITALWSLAIISWERWFVVCK 390
Query: 139 PFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSE 198
PFGN +F K A+ VL +W + PP FGWSR+ P GL+ SCGPD ++ T +
Sbjct: 391 PFGNIKFDGKLAVAGVLFSWIWSCAWTAPPIFGWSRYWPHGLKTSCGPDVFSGTTDPGVQ 570
Query: 199 SYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXF 258
SY L + C PL++I F Y Q+ A++AVAAQQ+ES +TQKA +
Sbjct: 571 SYMVVLMVTCCFFPLAVIIFCYLQVWLAIRAVAAQQKESESTQKAEKEVSRMVVVMILAY 750
Query: 259 CVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQF 310
C C+ PY FA + N + +P+FF+KSA IYNPIIY FMN+QF
Sbjct: 751 CFCWGPYTIFASFAAAN-PYAFHPLTAALPAFFAKSATIYNPIIYVFMNRQF 903
>gb|L42953.1|COURHOD Cottus kessleri rhodopsin gene, partial cds
Length = 867
Score = 238 bits (608), Expect = 4e-61
Identities = 119/290 (41%), Positives = 173/290 (59%)
Frame = +1
Query: 26 YHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCI 85
Y ++P + A+M + L+GFP+N + L TL +KKLR PLNYIL+N++ + +
Sbjct: 1 YLVSPA-GYAALGAYMFLLILVGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVL 177
Query: 86 FSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRF 145
S +GYFV GR C LEGF T+ G + WSL LA ER+I + K NFRF
Sbjct: 178 GGFTTTMYTSMHGYFVLGRLGCNLEGFFVTLGGEIALWSLVVLAIERWIGVFKSIRNFRF 357
Query: 146 SSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF 205
+ HA+ + +W + ++PP GW R+IPEG+QCSCG D+YT + +ES+ ++F
Sbjct: 358 TEDHAIMGLGFSWVMAATCAVPPLVGWLRYIPEGMQCSCGVDYYTRAEGFNNESFVIYMF 537
Query: 206 IFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPY 265
I F++PL +I F Y +LL A+K AA QQES TTQ+A + VC++PY
Sbjct: 538 IVHFLIPLIVIFFCYGRLLCAVKEAAAAQQESETTQRAEKEVSRMVVIMVIGYLVCWLPY 717
Query: 266 AAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM 315
A+ A ++ N+ +T+P+FF+KS IYNP+IY MNKQF C++
Sbjct: 718 ASVAWWIFCNQGSEFGPIFMTLPAFFAKSPAIYNPLIYICMNKQFPHCMI 867
>gb|AF148142.1|AF148142 Chanos chanos rhodopsin (Rhod) gene, partial cds
Length = 735
Score = 228 bits (580), Expect = 8e-58
Identities = 110/250 (44%), Positives = 154/250 (61%), Gaps = 1/250 (0%)
Frame = +1
Query: 78 FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVIC 137
FGGF +++ S +GYFVFGR C +EGF T+ G + WSL LA ER++V+C
Sbjct: 7 FGGFTTTMYT-------SLHGYFVFGRTGCNIEGFFATLGGEIALWSLVVLAIERWVVVC 165
Query: 138 KPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS 197
KP NFRF HA+ V TW + ++PP GWSR+IPEG+QCSCG D+YT + +
Sbjct: 166 KPMSNFRFGENHAIMGVAFTWIMASSCAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNN 345
Query: 198 ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXX 257
ES+ ++FI F +PL++I F Y +L+ A+K AAQQQES TTQ+A
Sbjct: 346 ESFVIYMFIVHFSIPLTVITFCYGRLVCAVKEAAAQQQESETTQRAEREVTRMVIVMFIA 525
Query: 258 FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMK 316
F +C++PYA A Y+ ++ +T+P+FF+KS+ IYNP+IY +NKQF+ C I
Sbjct: 526 FLICWLPYAGVAWYIFTHQGSEFGPVFMTLPAFFAKSSSIYNPVIYICLNKQFRHCMITT 705
Query: 317 MVCGKAMTDE 326
M CGK +E
Sbjct: 706 MFCGKNPFEE 735
>gb|AF233520.1|AF233520 Cyprinus carpio VA opsin mRNA, complete cds
Length = 1684
Score = 227 bits (579), Expect = 1e-57
Identities = 119/305 (39%), Positives = 171/305 (56%)
Frame = +3
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+ GP IAP W + + AA M V + N V++ T R+K+LRQPLNYI+VN+S
Sbjct: 228 PFSGPLSSIAP-WNYRVLAALMFVVTSVSLCENFTVMLVTFRFKQLRQPLNYIIVNLSLA 404
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
FL+ + F+ + +GYF GR C LEGF T G+V WSLA LAFER+ VIC+P
Sbjct: 405 DFLVSLSGGTISFLTNFHGYFFLGRWACVLEGFAVTFFGIVALWSLAVLAFERFFVICRP 584
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GN R KHA +L W+ +IPP GWS + + +C P+WY+ ++ +
Sbjct: 585 LGNIRLRGKHAALGLLFVWSFSFVWTIPPVLGWSSYTVSKIGTTCEPNWYS--GNFQDHT 758
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ F CFI PL++I Y +LLR L+ V+ +K F
Sbjct: 759 FIITFFTTCFIFPLAVIIVCYCKLLRKLRKVSNTHGRLGNARKPERQVTRMVVVMIVAFM 938
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC 319
V + PYAAF++ + + LD RL P+FFSK+A +YNPIIY FMNKQF+ C+++++
Sbjct: 939 VAWTPYAAFSIVVTALPSIHLDPRLAAAPAFFSKTAAVYNPIIYVFMNKQFRKCVVQLLS 1118
Query: 320 GKAMT 324
+ +T
Sbjct: 1119CRDVT 1133
>gb|AF158976.1|AF158976 Macaca fascicularis SW opsin gene, complete cds
Length = 3312
Score = 226 bits (577), Expect = 2e-57
Identities = 110/119 (92%), Positives = 112/119 (93%), Gaps = 1/119 (0%)
Frame = +2
Query: 1 MRKMSEEE-FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVAT 59
MRKMSEEE FYLFKN+SSV PWDGPQYHIAPVWAFYLQAAFMGTVFL GFPLNAMVLVAT
Sbjct: 44 MRKMSEEEEFYLFKNLSSVKPWDGPQYHIAPVWAFYLQAAFMGTVFLAGFPLNAMVLVAT 223
Query: 60 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
+RYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFV SC GYFVFGRHVCA E FLGTVAG
Sbjct: 224 VRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVNSCKGYFVFGRHVCAFEAFLGTVAG 400
Score = 135 bits (341), Expect = 4e-30
Identities = 68/94 (72%), Positives = 71/94 (75%)
Frame = +3
Query: 230 VAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPS 289
VAAQQQESATTQKA FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIP+
Sbjct: 1968 VAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPA 2147
Query: 290 FFSKSACIYNPIIYCFMNKQFQACIMKMVCGKAM 323
FFSKSACIYNPIIYCFMNKQ + I V K +
Sbjct: 2148 FFSKSACIYNPIIYCFMNKQVKLSIHIPVVQKTL 2249
Score = 126 bits (317), Expect = 2e-27
Identities = 57/58 (98%), Positives = 58/58 (99%)
Frame = +3
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVA 231
RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAV+
Sbjct: 1173 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVS 1346
Score = 123 bits (308), Expect = 3e-26
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +3
Query: 118 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR 174
GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR
Sbjct: 681 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR 851
Score = 72.4 bits (176), Expect = 6e-11
Identities = 36/43 (83%), Positives = 39/43 (89%)
Frame = +1
Query: 306 MNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
++ QFQA IMKMVCGKAMTDESD SSQKTEVSTVSS+QVGPN
Sbjct: 3175 LSLQFQAHIMKMVCGKAMTDESDISSSQKTEVSTVSSSQVGPN 3303
>gb|AF039422.1|COBOG1 Cebus olivaceus blue opsin gene, exon 1
Length = 476
Score = 224 bits (571), Expect = 9e-57
Identities = 108/119 (90%), Positives = 112/119 (93%), Gaps = 1/119 (0%)
Frame = +3
Query: 1 MRKMSEEE-FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVAT 59
M KMSEEE FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMG VFL+G PLNAMVLVAT
Sbjct: 69 MSKMSEEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGIVFLVGLPLNAMVLVAT 248
Query: 60 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
+RYKKLR PLNY+LVNVS GGFLLCIFSVFPVFVASC+GYFVFGRHVCALE FLGTVAG
Sbjct: 249 VRYKKLRHPLNYVLVNVSVGGFLLCIFSVFPVFVASCHGYFVFGRHVCALEAFLGTVAG 425
>gb|AF137209.1|AF137209 Osteoglossum sp. rhodopsin (Rhod) gene, partial cds
Length = 732
Score = 222 bits (566), Expect = 3e-56
Identities = 109/245 (44%), Positives = 147/245 (59%), Gaps = 1/245 (0%)
Frame = +1
Query: 78 FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVIC 137
FGGF +++ S +GYFVFG C +EGF T G WSL LA ER++V+C
Sbjct: 10 FGGFTTTMYT-------SMHGYFVFGTTGCNIEGFFATTGGETALWSLVVLAIERWVVVC 168
Query: 138 KPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS 197
KP NFRF HA+ V TW + S+PP FGWSR+IPEG+QCSCG D+YT+ + +
Sbjct: 169 KPMSNFRFGENHAIMGVAFTWVMACSCSVPPLFGWSRYIPEGMQCSCGIDYYTMKPEVNN 348
Query: 198 ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXX 257
S+ ++FI F +PL+ + F Y +L+ +K AAQQQES TTQ+A
Sbjct: 349 YSFVIYMFIVHFSIPLTTVFFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVIIMVIS 528
Query: 258 FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMK 316
F VC++PYA A Y+ ++ +T P+FF+K+A IYNPIIY MNKQF+ C I
Sbjct: 529 FLVCWLPYAGVAWYIFTHQGSDFGPVFMTAPAFFAKAASIYNPIIYICMNKQFRHCMITT 708
Query: 317 MVCGK 321
+ CGK
Sbjct: 709 LCCGK 723
>gb|AF369050.1|AF369050 Polyodon spathula rhodopsin gene, partial cds
Length = 726
Score = 222 bits (566), Expect = 3e-56
Identities = 109/245 (44%), Positives = 150/245 (60%), Gaps = 1/245 (0%)
Frame = +1
Query: 78 FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVIC 137
FGGF +++ S NGYFVFG C +EGF T+ G + L LA +RYIVIC
Sbjct: 10 FGGFTTTMYT-------SMNGYFVFGTTGCYIEGFFATLGGEIALLCLVVLAIQRYIVIC 168
Query: 138 KPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS 197
KP NFRF HA+ V+ TW + + + PP FGWSR+IPEG+QCSCG D+YT+ + +
Sbjct: 169 KPMSNFRFGDNHAIMGVVFTWIMALSCAAPPLFGWSRYIPEGMQCSCGIDYYTLKPEVNN 348
Query: 198 ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXX 257
ES+ ++FI FI+PL +I F Y +L+ +K AAQQQES TTQ+A
Sbjct: 349 ESFVIYMFIVHFIIPLIIIGFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVLMVIS 528
Query: 258 FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMK 316
+ VC+ PYA+ A Y+ ++ +T P+FF+KS+ +YNP+IY MNKQF+ C I
Sbjct: 529 YMVCWTPYASVAWYIFTHQGSHFGPVFMTAPAFFAKSSALYNPLIYVLMNKQFRHCMITT 708
Query: 317 MVCGK 321
+ CGK
Sbjct: 709 LCCGK 723
>dbj|AB035276.1|AB035276 Danio rerio mRNA for VAL-opsin, complete cds
Length = 1134
Score = 222 bits (565), Expect = 4e-56
Identities = 118/324 (36%), Positives = 180/324 (55%), Gaps = 1/324 (0%)
Frame = +1
Query: 20 PWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG 79
P+ P IAP W + + AA M V + N V++ T R+++LRQPLNYI+VN+S
Sbjct: 49 PFSAPLSSIAP-WNYSVLAALMFVVTALSLSENFTVMLVTFRFQQLRQPLNYIIVNLSLA 225
Query: 80 GFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKP 139
FL+ + F+ + +GYF G+ C LEGF T G+V WSLA LAFER+ VIC+P
Sbjct: 226 DFLVSLTGGSISFLTNYHGYFFLGKWACVLEGFAVTFFGIVALWSLAVLAFERFFVICRP 405
Query: 140 FGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSES 199
GN R KHA ++ W+ ++PP GWS + + +C P+WY+ + +
Sbjct: 406 LGNIRLRGKHAALGLVFVWSFSFIWTVPPVLGWSSYTVSRIGTTCEPNWYS--GNFHDHT 579
Query: 200 YTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFC 259
+ LF CFI PL +I Y +L+R L+ V+ +K F
Sbjct: 580 FIITLFSTCFIFPLGVIIVCYCKLIRKLRKVSNTHGRLGNARKPERQVTRMVVVMIVAFM 759
Query: 260 VCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV- 318
V + PYAAF++ + + + +D RL IP+F +K+A +YNPIIY FMNKQF+ C+++++
Sbjct: 760 VAWTPYAAFSIIITAHPSMHVDPRLAAIPAFVAKTAAVYNPIIYVFMNKQFRKCLVQLLS 939
Query: 319 CGKAMTDESDTCSSQKTEVSTVSS 342
C K E + ++Q TE + ++S
Sbjct: 940 CSKVTVVEGN--NNQTTERAGMTS 1005
>gb|AF039418.1|ALPABOP1 Alouatta palliata blue opsin gene, exon 1
Length = 355
Score = 221 bits (564), Expect = 6e-56
Identities = 107/118 (90%), Positives = 111/118 (93%), Gaps = 1/118 (0%)
Frame = +1
Query: 1 MRKMSEEE-FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVAT 59
M KMSEEE FYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMG VFL G PLNAMVLVAT
Sbjct: 1 MSKMSEEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGIVFLAGLPLNAMVLVAT 180
Query: 60 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVA 117
+RY+KLR PLNY+LVNVS GGFLLCIFSVFPVFVASC+GYFVFGRHVCALEGFLGTVA
Sbjct: 181 VRYRKLRHPLNYVLVNVSVGGFLLCIFSVFPVFVASCHGYFVFGRHVCALEGFLGTVA 354
>gb|AF031529.1|AF031529 Cavia porcellus green-sensitive opsin mRNA, partial cds
Length = 819
Score = 221 bits (563), Expect = 7e-56
Identities = 111/274 (40%), Positives = 164/274 (59%), Gaps = 1/274 (0%)
Frame = +1
Query: 29 APVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSV 88
AP W ++L +A+M V + N +VLVAT+R+KKLR PLN+ILVN++ + +
Sbjct: 1 APRWVYHLTSAWMTIVVIASIFTNGLVLVATMRFKKLRHPLNWILVNLAVADLAETVIAS 180
Query: 89 FPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSK 148
V GYFV G +C +EG+ ++ G+ WSLA +++ER++V+CKPFGN RF +K
Sbjct: 181 TISVVNQVYGYFVLGHPLCVVEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAK 360
Query: 149 HALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS-ESYTWFLFIF 207
A+ ++ +W + PP FGWSR+ P GL+ SCGPD ++ GT Y +SY L +
Sbjct: 361 LAIVGIVFSWVWSAVWTAPPIFGWSRYWPYGLKTSCGPDVFS-GTSYPGVQSYMMVLMVT 537
Query: 208 CFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAA 267
C I PLS+I Y + A++AVA QQ+ES +TQKA +C+C+ PYA
Sbjct: 538 CCITPLSIIVLCYLHVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVLAYCLCWGPYAF 717
Query: 268 FAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
FA + N + + +P++F+KSA IYNPI
Sbjct: 718 FACFATANPGYSFHPLVAALPAYFAKSATIYNPI 819
>gb|AF031530.1|AF031530 Sciurus carolinensis green-sensitive opsin mRNA, partial cds
Length = 819
Score = 219 bits (557), Expect = 4e-55
Identities = 109/274 (39%), Positives = 163/274 (58%), Gaps = 1/274 (0%)
Frame = +1
Query: 29 APVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSV 88
AP W +++ + +M V + N +VLVAT+++KKLR PLN+ILVN++ + +
Sbjct: 1 APRWVYHITSTWMIIVVIASVFTNGLVLVATMKFKKLRHPLNWILVNLAIADLAETVIAS 180
Query: 89 FPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSK 148
V GYFV G +C +EG+ +V G+ WSLA +++ER++V+CKPFGN RF +K
Sbjct: 181 TISVVNQLYGYFVLGHPLCVVEGYTVSVCGITGLWSLAIISWERWLVVCKPFGNMRFDAK 360
Query: 149 HALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS-ESYTWFLFIF 207
A+ + +W + PP FGWSR+ P GL+ SCGPD ++ GT Y +SY L +
Sbjct: 361 LAIVGIAFSWIWSAVWTAPPIFGWSRYWPYGLKTSCGPDVFS-GTSYPGMQSYMMVLMVT 537
Query: 208 CFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAA 267
C I+PLS+I Y Q+ A++AVA QQ+ES +TQKA +C+C+ PY
Sbjct: 538 CCIIPLSIIILCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVFAYCLCWGPYTF 717
Query: 268 FAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
FA + N + + +P++F+KSA IYNPI
Sbjct: 718 FACFATANPGYAFHPLVAALPAYFAKSATIYNPI 819
>gb|AF031526.1|AF031526 Oryctolagus cuniculus green-sensitive opsin mRNA, partial cds
Length = 819
Score = 219 bits (557), Expect = 4e-55
Identities = 112/274 (40%), Positives = 163/274 (58%), Gaps = 1/274 (0%)
Frame = +1
Query: 29 APVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSV 88
AP W ++L +A+M V + N +VLVAT+R+KKLR PLN+ILVN++ + +
Sbjct: 1 APRWVYHLTSAWMILVVIASVFTNGLVLVATMRFKKLRHPLNWILVNLAVADLAETVIAS 180
Query: 89 FPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSK 148
V GYFV G +C +EG+ ++ G+ WSLA +++ER++V+CKPFGN RF +K
Sbjct: 181 TISVVNQFYGYFVLGHPLCVVEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAK 360
Query: 149 HALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS-ESYTWFLFIF 207
A+ + +W + PP FGWSR+ P GL+ SCGPD ++ GT Y +SY L +
Sbjct: 361 LAIAGIAFSWIWAAVWTAPPIFGWSRYWPYGLKTSCGPDVFS-GTSYPGVQSYMMVLMVT 537
Query: 208 CFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAA 267
C I+PLS+I Y Q+ A+ AVA QQ+ES +TQKA +C+C+ PY
Sbjct: 538 CCIIPLSVIVLCYLQVWMAIPAVAKQQKESESTQKAEKEVTRMVVVMVFAYCLCWGPYTF 717
Query: 268 FAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
FA + + + + IPS+F+KSA IYNPI
Sbjct: 718 FACFATAHPGYSFHPLVAAIPSYFAKSATIYNPI 819
>gb|AF031527.1|AF031527 Odocoileus virginianus green-sensitive opsin mRNA, partial cds
Length = 819
Score = 218 bits (555), Expect = 6e-55
Identities = 108/273 (39%), Positives = 162/273 (58%)
Frame = +1
Query: 29 APVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSV 88
AP W ++L +A+M V + N +VL AT+R+KKLR PLN+ILVN++ + I +
Sbjct: 1 APRWVYHLTSAWMVFVVIASVFTNGLVLAATMRFKKLRHPLNWILVNLAIADLVETIIAS 180
Query: 89 FPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSK 148
V GYFV G +C +EG+ ++ G+ WSLA +++ER++V+C+PFGN RF +K
Sbjct: 181 TISVVNQMYGYFVLGHPLCVVEGYTASLCGITGLWSLAIISWERWMVVCRPFGNVRFDAK 360
Query: 149 HALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFC 208
A+ + +W + PP FGWSR+ P GL+ SCGPD ++ + +SY L I C
Sbjct: 361 LAIAGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMITC 540
Query: 209 FIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAF 268
+PLS+I Y Q+ A++AVA QQ+ES +TQKA FC+C+ PYA F
Sbjct: 541 CFIPLSVIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVMVMIFAFCLCWGPYAFF 720
Query: 269 AMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
A + + + + +P++F+KSA IYNPI
Sbjct: 721 ACFAAAHPGYAFHPLVAALPAYFAKSATIYNPI 819
>gb|AF148144.1|AF148144 Lates calcarifer rhodopsin (Rhod) gene, partial cds
Length = 734
Score = 218 bits (555), Expect = 6e-55
Identities = 108/245 (44%), Positives = 148/245 (60%), Gaps = 1/245 (0%)
Frame = +1
Query: 78 FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVIC 137
FGGF +++ S +GYFV GR C LEG+ T+ G + WSL LA ER++V+C
Sbjct: 7 FGGFTTTMYT-------SMHGYFVLGRLGCNLEGYFATLGGEIGLWSLVVLAIERWMVVC 165
Query: 138 KPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS 197
KP NFRF HA+ ++ TW + PP GWSR+IPEG+QCSCG D+YT + +
Sbjct: 166 KPISNFRFGENHAIMGLVFTWIAANACAAPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNN 345
Query: 198 ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXX 257
ES+ ++FI F +PL ++ F Y +LL A+K AA QQES TTQ+A
Sbjct: 346 ESFVVYMFICHFCIPLFVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIG 525
Query: 258 FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMK 316
F VC+ PYA A ++ ++ +TIP+FF+KS+ IYNP+IY FMNKQF+ C I
Sbjct: 526 FLVCWCPYAGVAWFIFTHQGSEFGPLFMTIPAFFAKSSSIYNPLIYIFMNKQFRHCMITT 705
Query: 317 MVCGK 321
+ CGK
Sbjct: 706 LCCGK 720
>gb|AF031528.1|AF031528 Rattus norvegicus green-sensitive opsin mRNA, partial cds
Length = 819
Score = 217 bits (553), Expect = 1e-54
Identities = 110/274 (40%), Positives = 163/274 (59%), Gaps = 1/274 (0%)
Frame = +1
Query: 29 APVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSV 88
AP W ++L + +M V + N +VL AT+R+KKLR PLN+ILVN++ I +
Sbjct: 1 APRWVYHLTSTWMILVVIASVFTNGLVLAATMRFKKLRHPLNWILVNLAVADLAETIIAS 180
Query: 89 FPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSK 148
V GYFV G +C +EG++ ++ G+ WSLA +++ER++V+CKPFGN RF +K
Sbjct: 181 TISVVNQIYGYFVLGHPLCVIEGYIVSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAK 360
Query: 149 HALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS-ESYTWFLFIF 207
A ++ +W + PP FGWSR+ P GL+ SCGPD ++ GT Y +SY L +
Sbjct: 361 LATVGIVFSWVWAAVWTAPPIFGWSRYWPYGLKTSCGPDVFS-GTSYPGVQSYMMVLMVT 537
Query: 208 CFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAA 267
C I PLS+I Y Q+ A++AVA QQ+ES +TQKA +C+C+ PY
Sbjct: 538 CCIFPLSIIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVFAYCLCWGPYTF 717
Query: 268 FAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
FA + + + + ++PS+F+KSA IYNPI
Sbjct: 718 FACFATAHPGYAFHPLVASLPSYFAKSATIYNPI 819
>gb|U53875.1|SBU53875 Saimiri boliviensis blue cone pigment gene, partial cds
Length = 3287
Score = 216 bits (551), Expect = 2e-54
Identities = 105/119 (88%), Positives = 108/119 (90%), Gaps = 1/119 (0%)
Frame = +3
Query: 1 MRKM-SEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVAT 59
M KM EEEFYLFKNISSVGPWDGPQYHIAPVWAF LQAAFMG VFL G PLN+MVLVAT
Sbjct: 48 MSKMPEEEEFYLFKNISSVGPWDGPQYHIAPVWAFQLQAAFMGIVFLAGLPLNSMVLVAT 227
Query: 60 LRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAG 118
+RYKKLR PLNY+LVNVS GGFLLCIFSV PVFV SCNGYFVFGRHVCALEGFLGTVAG
Sbjct: 228 VRYKKLRHPLNYVLVNVSVGGFLLCIFSVLPVFVNSCNGYFVFGRHVCALEGFLGTVAG 404
Score = 133 bits (335), Expect = 2e-29
Identities = 66/91 (72%), Positives = 70/91 (76%)
Frame = +3
Query: 224 LRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAFAMYMVNNRNHGLDLR 283
LRA VAAQQQESATTQKA FCVCYVPYAA AMYMVNNRNHGLDLR
Sbjct: 1929 LRAPPQVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAALAMYMVNNRNHGLDLR 2108
Query: 284 LVTIPSFFSKSACIYNPIIYCFMNKQFQACI 314
LV+IP+FFSKS+CIYNPIIYCFMNKQ + I
Sbjct: 2109 LVSIPAFFSKSSCIYNPIIYCFMNKQVKLSI 2201
Score = 119 bits (298), Expect = 4e-25
Identities = 55/57 (96%), Positives = 55/57 (96%)
Frame = +1
Query: 118 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSR 174
GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHAL VVL TWTIGIGVSIPPFFGWSR
Sbjct: 685 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALMVVLTTWTIGIGVSIPPFFGWSR 855
Score = 118 bits (295), Expect = 9e-25
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +3
Query: 174 RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVA 231
R+I EGLQCSCGPDWYTVGTKYRSE YTWFLFIFCFIVPLSLICFSY QLLRALKAV+
Sbjct: 1182 RYIAEGLQCSCGPDWYTVGTKYRSEYYTWFLFIFCFIVPLSLICFSYAQLLRALKAVS 1355
Score = 73.9 bits (180), Expect = 2e-11
Identities = 35/43 (81%), Positives = 40/43 (92%)
Frame = +3
Query: 306 MNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN 348
++ QF+ACIM+MVCGKAMTDESD SSQKTEVSTVSS+QVGPN
Sbjct: 3144 LSLQFRACIMEMVCGKAMTDESDISSSQKTEVSTVSSSQVGPN 3272
>gb|AF031532.1|AF031532 Felis catus red opsin mRNA, partial cds
Length = 819
Score = 216 bits (549), Expect = 3e-54
Identities = 108/273 (39%), Positives = 161/273 (58%)
Frame = +1
Query: 29 APVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSV 88
AP W +++ +A+M V + N +VL AT+++KKLR PLN+ILVN++ I +
Sbjct: 1 APRWVYHVTSAWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETIIAS 180
Query: 89 FPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSK 148
V GYFV G +C LEG+ ++ G+ WSLA +++ER++V+CKPFGN RF +K
Sbjct: 181 TISVVNQIYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAK 360
Query: 149 HALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFC 208
A+ + +W + PP FGWSR+ P GL+ SCGPD ++ + +SY L I C
Sbjct: 361 LAIAGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMITC 540
Query: 209 FIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAF 268
I+PLS+I Y Q+ A++AVA QQ+ES +TQKA +CVC+ PY F
Sbjct: 541 CIIPLSVIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVMVMIFAYCVCWGPYTFF 720
Query: 269 AMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
A + + + + +P++F+KSA IYNPI
Sbjct: 721 ACFAAAHPGYAFHPLVAALPAYFAKSATIYNPI 819
>gb|AF148143.1|AF148143 Psettodes sp. rhodopsin (Rhod) gene, partial cds
Length = 735
Score = 215 bits (548), Expect = 4e-54
Identities = 106/250 (42%), Positives = 150/250 (59%), Gaps = 1/250 (0%)
Frame = +1
Query: 78 FGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVIC 137
FGGF +++ S +GYFV GR C LEG+ T+ G + WSL LA ER++V+C
Sbjct: 7 FGGFTTTMYT-------SMHGYFVLGRLGCNLEGYFATLGGEIALWSLVVLAIERWMVVC 165
Query: 138 KPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRS 197
KP NFRF HA+ + TW + ++PP GWSR+IPEG+QCSCG D+YT + +
Sbjct: 166 KPISNFRFGENHAIMGLAFTWFMANACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNN 345
Query: 198 ESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXX 257
ES+ ++F F +PL+++ F Y +LL A+K AA QQES TTQ+A
Sbjct: 346 ESFVVYMFTCHFCIPLTVVFFCYGRLLCAVKETAAAQQESETTQRAEREVTRMVVIMVIA 525
Query: 258 FCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC-IMK 316
F +C+ PYA A ++ ++ +TIP+FF+KS+ IYNP+IY MNKQF+ C I
Sbjct: 526 FLICWCPYAGVAWWIFTHQGSEFGPVFMTIPAFFAKSSSIYNPMIYICMNKQFRHCMITT 705
Query: 317 MVCGKAMTDE 326
+ CGK +E
Sbjct: 706 LCCGKNPFEE 735
>gb|AF031531.1|AF031531 Equus caballus opsin mRNA, partial cds
Length = 819
Score = 215 bits (547), Expect = 5e-54
Identities = 108/273 (39%), Positives = 161/273 (58%)
Frame = +1
Query: 29 APVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSV 88
AP W +++ +A+M V + N +VL AT+R+KKLR PLN+ILVN++ I +
Sbjct: 1 APRWVYHVTSAWMIFVVIASVFTNGLVLAATMRFKKLRHPLNWILVNLAVADLAETIIAS 180
Query: 89 FPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSK 148
V GYFV G +C +EG+ ++ G+ WSLA +++ER++V+CKPFGN RF +K
Sbjct: 181 TISVVNQIYGYFVLGHPMCVVEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAK 360
Query: 149 HALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFC 208
A+ + +W + PP FGWSR+ P GL+ SCGPD ++ + +SY L I C
Sbjct: 361 LAVAGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMITC 540
Query: 209 FIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAXXXXXXXXXXXXXXFCVCYVPYAAF 268
I+PLS+I Y Q+ A++AVA QQ+ES +TQKA FC+C+ PY F
Sbjct: 541 CIIPLSVIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVMVMVFAFCLCWGPYTFF 720
Query: 269 AMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPI 301
A + + + + +P++F+KSA IYNPI
Sbjct: 721 ACFAAAHPGYAFHPLVAALPAYFAKSATIYNPI 819
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 19, 2002 12:00 AM
Number of letters in database: 587,334,133
Number of sequences in database: 1,164,257
Lambda K H
0.330 0.141 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,528,950,712
Number of Sequences: 1164257
Number of extensions: 48100522
Number of successful extensions: 406383
Number of sequences better than 10.0: 4581
Number of HSP's better than 10.0 without gapping: 101936
Number of HSP's successfully gapped in prelim test: 15047
Number of HSP's that attempted gapping in prelim test: 157454
Number of HSP's gapped (non-prelim): 323289
length of query: 348
length of database: 1,627,433,809
effective HSP length: 136
effective length of query: 212
effective length of database: 1,469,094,857
effective search space: 311448109684
effective search space used: 311448109684
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 79 (35.0 bits)