TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(475 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,171,752 sequences; 566,364,212 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_009380.1| Mus musculus thyroid hormone receptor beta... 947 0.0
gb|S62756.1|S62756 hormone receptor beta subunit [mice, thy... 724 0.0
gb|J03819.1|RATT3REC Rattus norvegicus (clone erb62) thyroi... 724 0.0
gb|J03933.1|RATCERBAB Rat thyroid receptor hormone beta (c-... 723 0.0
ref|XM_002986.3| Homo sapiens thyroid hormone receptor, bet... 721 0.0
ref|NM_000461.1| Homo sapiens thyroid hormone receptor, bet... 714 0.0
emb|X04707.1|HSERBAR Human c-erb-A mRNA for thyroid hormone... 714 0.0
gb|M26747.1|HUMCERBA Human c-erbA mRNA, complete cds 714 0.0
emb|Z50188.1|GGBETATHR G.gallus mRNA for beta-thyroid hormo... 701 0.0
emb|Z49151.1|CMBTHR C.moschata mRNA for beta-thyroid hormon... 701 0.0
emb|X17504.1|GGTHRB Chicken mRNA for thyroid hormone recept... 701 0.0
gb|M65207.1|CHKTRB Chicken beta-thyroid hormone receptor (T... 686 0.0
gb|L27344.1|RANCERBAB Rana catesbeiana (c-erbA-beta) mRNA, ... 682 0.0
gb|M35360.1|XELBETAB X.laevis thyroid hormone receptor beta... 680 0.0
gb|M35359.1|XELBETA X.laevis thyroid hormone receptor beta ... 679 0.0
gb|M35361.1|XELBETAC X.laevis thyroid hormone receptor beta... 677 0.0
gb|M35362.1|XELBETAD X.laevis thyroid hormone receptor beta... 676 0.0
gb|AF109732.1|AF109732 Danio rerio thyroid hormone receptor... 661 0.0
gb|AF302252.1|AF302252 Salmo salar thyroid hormone receptor... 649 0.0
dbj|D45245.1|PAITHRB Flounder mRNA for thyroid hormone rece... 643 0.0
gb|AF302251.1|AF302251 Salmo salar thyroid hormone receptor... 641 0.0
emb|Y00987.1|GGCERBAR Chicken c-erbA mRNA for thyroid hormo... 632 e-179
emb|Z50080.1|CMATHREC C.moschata mRNA for alpha-thyroid hor... 625 e-177
emb|AJ002363.1|APAJ2363 Aptenodytes patagonicus mRNA for al... 623 e-176
emb|X07750.1|MMCERBA1 Mouse c-erbA alpha1 mRNA for thyroid ... 621 e-176
emb|X12744.1|RNCERBATR Rat mRNA for c-erb-A thyroid hormone... 621 e-176
gb|M18028.1|RATTHR Rat thyroid hormone receptor mRNA, compl... 620 e-175
emb|X51983.1|MMCERBA Mouse c-erbA-alpha mRNA for thyroid ho... 619 e-175
gb|L76285.1|XELXLTH Xenopus laevis thyroid hormone alpha B ... 619 e-175
gb|M35343.1|XELTHYA Xenopus laevis thyroid hormone receptor... 618 e-175
emb|X17385.1|XLTHR Xenopus mRNA for thyroid hormone receptor 617 e-175
emb|AJ005797.1|SSAJ5797 Sus scrofa mRNA for thyroid hormone... 617 e-175
gb|L06064.1|RANCERBAA Rana catesbeiana c-erbA-alpha mRNA, c... 617 e-175
emb|Z68308.1|OAERBAAL1 O.aries mRNA for thyroid hormone rec... 617 e-175
gb|BC008851.1|BC008851 Homo sapiens, thyroid hormone recept... 617 e-175
gb|M24748.1|HUMTHRA1A Human thyroid hormone receptor alpha ... 617 e-175
emb|X55005.1|HSCERBAR Homo sapiens mRNA for thyroid hormone... 617 e-175
gb|M35344.1|XELTHYB X.laevis thyroid hormone receptor alpha... 612 e-173
emb|AJ002300.1|PAAJ2300 Pygoscelis adeliae mRNA for thyroid... 610 e-173
emb|Z68307.1|OAERBABT1 O.aries mRNA for thyroid hormone rec... 607 e-172
gb|U54796.1|DRU54796 Danio rerio thyroid hormone receptor a... 605 e-171
gb|AF146775.1|AF146775 Salmo salar thyroid hormone receptor... 605 e-171
dbj|D16462.1|PAITHRAB Japanese flounder mRNA for thyroid ho... 602 e-170
dbj|D16461.1|PAITHRAA1 Japanese flounder mRNA for thyroid h... 599 e-169
gb|AF143296.1|AF143296 Hippoglossus hippoglossus thyroid ho... 597 e-168
gb|M17870.1|ACBERBAR Avian erythroblastosis virus strain ES... 585 e-165
emb|X12707.1|AEVPDNA Avian erythroblastosis virus provirus ... 582 e-164
emb|Y00044.1|REAEVERB Avian erythroblastosis virus gag, erb... 582 e-164
gb|M32090.1|ACBERBABG Avian erythroblastosis virus gag, erb... 582 e-164
gb|M17869.1|ACBERBATD Avian erythroblastosis virus strain E... 581 e-164
gb|K02006.1|ACBERBA Avian erythroblastosis virus polyprotei... 581 e-164
emb|X52211.1|AEVVER Avian erythroblastosis virus v-erb-A an... 578 e-163
emb|X07752.1|MMCERBA3 Mouse c-erbA alpha3 mRNA for thyroid ... 546 e-153
emb|X07409.1|RNTRAVI Rat c-erb-A alpha mRNA for T3 receptor... 545 e-153
emb|X07751.1|MMCERBA2 Mouse c-erbA alpha2 mRNA for thyroid ... 545 e-153
ref|NM_031134.1| Rattus norvegicus thyroid hormone receptor... 541 e-152
gb|M31174.1|RATERBAA Rat c-erbA-alpha-2-related protein mRN... 541 e-152
emb|AJ005798.1|SSAJ5798 Sus scrofa mRNA for thyroid hormone... 541 e-152
gb|M24899.1|HUMEAR7A Human triiodothyronine (ear7) mRNA, co... 540 e-152
gb|J03239.1|HUMTHRA2A Human c-erbA-alpha-2 gene encoding th... 540 e-152
gb|BC000261.1|BC000261 Homo sapiens, thyroid hormone recept... 540 e-152
ref|XM_083987.1| Homo sapiens thyroid hormone receptor, alp... 540 e-152
ref|XM_008585.3| Homo sapiens thyroid hormone receptor, alp... 540 e-152
gb|BC002728.1|BC002728 Homo sapiens, thyroid hormone recept... 540 e-152
ref|NM_003250.1| Homo sapiens thyroid hormone receptor, alp... 539 e-151
emb|Y00479.1|HSERBT1 H.sapiens mRNA for thyroid hormone rec... 539 e-151
gb|AF302254.1|AF302254 Scophthalmus maximus thyroid hormone... 531 e-149
gb|AF302243.1|AF302243 Takifugu rubripes thyroid hormone re... 500 e-139
gb|AF302253.1|AF302253 Scophthalmus maximus thyroid hormone... 475 e-132
gb|AF302241.1|AF302241 Anguilla anguilla thyroid hormone re... 469 e-130
gb|AF302247.1|AF302247 Oreochromis niloticus thyroid hormon... 468 e-130
gb|AF302244.1|AF302244 Takifugu rubripes thyroid hormone re... 466 e-129
gb|AF302242.1|AF302242 Danio rerio thyroid hormone receptor... 449 e-124
gb|AF302248.1|AF302248 Oreochromis niloticus thyroid hormon... 442 e-122
gb|AF322218.1|AF322218 Danio rerio thyroid hormone receptor... 404 e-111
gb|AF302240.1|AF302240 Anguilla anguilla thyroid hormone re... 399 e-109
gb|M31177.1|RATERBAA2 Rat c-erbA-alpha-2 protein mRNA, comp... 384 e-104
gb|AF302246.1|AF302246 Oncorhynchus mykiss thyroid hormone ... 364 8e-99
gb|AF302249.1|AF302249 Oreochromis niloticus thyroid hormon... 352 6e-95
gb|AF302245.1|AF302245 Oncorhynchus mykiss thyroid hormone ... 351 1e-94
gb|AF302250.1|AF302250 Salmo salar thyroid hormone receptor... 340 2e-91
gb|AY049025.1|AY049025S1 Rana pipiens thyroid hormone recep... 317 2e-84
gb|AF146777.1|AF146777 Salmo salar thyroid hormone receptor... 313 2e-83
dbj|AB057767.1|AB057767 Ciona savignyi Cs-NR1 mRNA for nucl... 283 2e-74
emb|Y16623.1|NMY16623 Necturus maculosus mRNA for thyroid h... 278 8e-73
gb|AF077403.1|AF077403 Ciona intestinalis nuclear receptor ... 263 3e-68
gb|S62758.1|S62758 hormone receptor beta subunit [mice, thy... 238 7e-61
gb|M25071.1|RATT3R Rat pituitary-specific thyroid hormone r... 234 2e-59
gb|U15542.1|MMBTTHR1 Mus musculus beta 2 thyroid hormone re... 231 9e-59
gb|S74155.1|S74155 zRAR alpha =retinoic acid receptor alpha... 228 9e-58
emb|X57339.1|GDRARB1 G.domesticus RAR beta mRNA for retinoi... 228 9e-58
gb|AF342944.1|AF342944 Danio rerio retinoic acid receptor a... 228 9e-58
gb|L03399.1|ZEFRARA2B Zebrafish retinoic acid receptor alph... 228 9e-58
emb|AJ012378.1|FRU012378 Fugu rubripes mRNA for retinoic ac... 228 1e-57
emb|AJ012379.2|FRU012379 Fugu rubripes mRNA for retinoic ac... 228 1e-57
gb|M73779.1|HUMPMLRAR Human PML-RAR protein (PML-RAR) mRNA,... 226 3e-57
emb|X59473.1|GGRARBETA G.gallus mRNA for retinoic acid rece... 226 3e-57
emb|X57340.1|GDRARB Chicken RAR-beta mRNA for retinoic acid... 226 4e-57
gb|AF110730.1|AF110730 Coturnix coturnix retinoic acid rece... 226 4e-57
emb|X87365.1|XLRNARARA X.laevis mRNA for retinoic acid rece... 226 4e-57
emb|X07282.1|HSRARE Human mRNA for retinoic acid receptor-e... 226 5e-57
emb|Z14254.1|NVRARA2M N.viridescens mRNA for retinoic acid ... 226 5e-57
gb|AF342936.1|AF342936 Danio rerio retinoic acid receptor a... 226 5e-57
gb|L03398.1|ZEFRARA2A Zebrafish retinoic acid receptor alph... 226 5e-57
gb|S63196.1|S63196 retinoic acid receptor-beta [chickens, m... 225 6e-57
emb|Y00291.1|HSHAPRA Human hap mRNA encoding a DNA-binding ... 225 6e-57
emb|X17586.1|NVRARDG Newt mRNA for retinoic receptor delta ... 225 6e-57
emb|X69944.1|NVRARD1AB N.viridescens retinoic acid receptor... 225 6e-57
emb|X17585.1|NVRARAG Newt mRNA for retinoic acid receptor a... 225 6e-57
gb|AY046944.1| Mesocricetus auratus retinoic acid receptor ... 225 6e-57
emb|X56674.1|GGRTABPB Chicken mRNA for retinoic acid bindin... 225 8e-57
gb|AF110729.1|AF110729 Coturnix coturnix retinoic acid rece... 225 8e-57
gb|AF157483.1|AF157483 Homo sapiens retinoic acid receptor ... 225 8e-57
ref|NM_016152.2| Homo sapiens retinoic acid receptor, beta ... 225 8e-57
ref|NM_000965.2| Homo sapiens retinoic acid receptor, beta ... 225 8e-57
ref|XM_053323.1| Homo sapiens retinoic acid receptor, beta ... 225 8e-57
emb|X57341.1|GDRARB2 G.domesticus RAR beta mRNA for retinoi... 225 8e-57
gb|AY046943.1| Mesocricetus auratus retinoic acid receptor ... 224 1e-56
gb|S82175.1|S82175 RAR-gamma 2.2=retinoic acid receptor gam... 224 1e-56
emb|X78335.1|GGRARA21 G.gallus retinoic acid receptor alpha... 224 1e-56
gb|U41743.1|HSU41743 Human nucleophosmin-retinoic acid rece... 224 1e-56
gb|U41742.1|HSU41742 Human nucleophosmin-retinoic acid rece... 224 1e-56
gb|S50916.1|S50916 PML-RAR fusion gene {fusion transcript} ... 224 1e-56
gb|AF242867.1|AF242867 Synthetic construct ECFP-retinoic ac... 224 1e-56
emb|Y10094.1|MSRARA M.spretus mRNA for retinoic acid recept... 224 1e-56
gb|BC008727.1|BC008727 Homo sapiens, retinoic acid receptor... 224 1e-56
ref|NM_000964.1| Homo sapiens retinoic acid receptor, alpha... 224 1e-56
gb|S82173.1|S82173 RAR-gamma 2.1=retinoic acid receptor gam... 224 1e-56
emb|X06614.1|HSRRA Human mRNA for receptor of retinoic acid 224 1e-56
emb|X06538.1|HSRAR Human mRNA for retinoic acid receptor 224 1e-56
emb|X73972.1|GGRARA1 G.gallus RAR-alpha1 mRNA for retinoic ... 224 1e-56
gb|S56660.1|S56660 retinoic acid nuclear receptor isoform b... 224 1e-56
gb|S56656.1|S56656 retinoic acid nuclear receptor isoform a... 224 1e-56
gb|L11444.1|XELSRARG1A Xenopus laevis mRNA sequence 224 2e-56
emb|X59396.1|XLRARGB Xenopus laevis mRNA for retinoic acid ... 223 4e-56
ref|XM_029728.3| Homo sapiens retinoic acid receptor, gamma... 223 4e-56
dbj|D86615.1|D86615 Polyandrocarpa misakiensis mRNA for ret... 222 5e-56
ref|NM_031528.1| Rattus norvegicus Retinoic acid receptor, ... 222 5e-56
gb|U15211.1|RNU15211 Rattus norvegicus retinoic acid recept... 222 5e-56
gb|AY046945.1| Mesocricetus auratus retinoic acid receptor ... 222 5e-56
ref|NM_000966.1| Homo sapiens retinoic acid receptor, gamma... 221 9e-56
gb|M38258.1|HUMRARGA Human retinoic acid receptor gamma 1 m... 221 9e-56
gb|M57707.1|HUMRARG Human retinoic acid receptor gamma mRNA... 221 9e-56
gb|BC013709.1|BC013709 Mus musculus, retinoic acid receptor... 221 9e-56
ref|NM_011244.1| Mus musculus retinoic acid receptor, gamma... 221 9e-56
gb|M24857.1|HUMHRARC Human retinoic acid receptor gamma mRN... 221 9e-56
gb|BC012923.1|BC012923 Mus musculus, Similar to retinoic ac... 221 9e-56
emb|X15848.1|MMRARG Mouse mRNA for retinoic acid receptor g... 221 9e-56
gb|BC019098.1|BC019098 Homo sapiens, retinoic acid receptor... 221 9e-56
gb|L12060.1|HUMRARG7A Homo sapiens retinoic acid receptor (... 221 1e-55
gb|M34475.1|MUSRARGB Mouse retinoic acid receptor gamma (RA... 221 1e-55
gb|L11445.1|XELXRARA Xenopus laevis mRNA sequence 221 1e-55
emb|AJ238614.1|SSC238614 Sus scrofa mRNA for thyroid hormon... 221 1e-55
gb|AF206315.1|AF206315 Ambystoma mexicanum retonoic acid re... 221 2e-55
gb|M34476.1|MUSRARGA Mouse retinoic acid receptor gamma (mR... 220 3e-55
gb|AF206316.1|AF206316S1 Ambystoma mexicanum retonoic acid ... 219 3e-55
emb|X73973.1|GGRARG2 G.gallus RAR-gamma2 mRNA for retinoic ... 219 6e-55
gb|AF342939.1|AF342939 Danio rerio retinoic acid receptor g... 219 6e-55
gb|S74156.1|S74156 zRAR gamma =retinoic acid receptor gamma... 219 6e-55
ref|NM_009024.1| Mus musculus retinoic acid receptor, alpha... 212 5e-53
gb|M60909.1|MUSRARAP Mouse retinoic acid receptor alpha' mR... 212 5e-53
ref|NM_031627.1| Rattus norvegicus nuclear receptor subfami... 210 3e-52
gb|U11685.1|RNU11685 Rattus norvegicus orphan receptor RLD-... 210 3e-52
emb|X57528.1|MMRARA M.musculus mRNA for retinoic acid recep... 209 3e-52
emb|AJ132601.1|MMU132601 Mus musculus mRNA for nuclear oxys... 209 6e-52
ref|NM_013839.1| Mus musculus nuclear receptor subfamily 1,... 209 6e-52
gb|BC012646.1|BC012646 Mus musculus, Similar to nuclear rec... 209 6e-52
gb|AF085745.1|AF085745 Mus musculus nuclear orphan receptor... 209 6e-52
ref|NM_005693.1| Homo sapiens nuclear receptor subfamily 1,... 207 1e-51
gb|U22662.1|HSU22662 Human nuclear orphan receptor LXR-alph... 207 1e-51
emb|X74497.1|HSTHRBI H.sapiens mRNA for thyroid hormone rec... 203 3e-50
dbj|D86614.1|D86614 Polyandrocarpa misakiensis mRNA for ret... 193 3e-47
gb|AF034086.2|AF034086 Celuca pugilator ecdysteroid recepto... 190 2e-46
gb|AF342940.1|AF342940 Danio rerio retinoic acid receptor g... 190 2e-46
gb|L03400.1|ZEFRARGII Zebrafish retinoic acid receptor gamm... 190 2e-46
emb|Y11533.1|TMECDYREC T.molitor mRNA for ecdysone receptor 189 4e-46
dbj|AB073784.1|AB073784 Paralichthys olivaceus fRAR-2 mRNA ... 187 2e-45
gb|AF049136.1|AF049136 Locusta migratoria ecdysone receptor... 187 2e-45
ref|NM_031626.1| Rattus norvegicus nuclear receptor subfami... 184 1e-44
gb|U14533.1|RNU14533 Rattus norvegicus orphan receptor mRNA... 184 1e-44
gb|BC007790.1|BC007790 Homo sapiens, nuclear receptor subfa... 184 1e-44
ref|NM_007121.1| Homo sapiens nuclear receptor subfamily 1,... 184 1e-44
gb|U07132.1|HSU07132 Human steroid hormone receptor Ner-I m... 184 1e-44
gb|U14534.1|HSU14534 Human orphan receptor mRNA, partial cds 184 1e-44
gb|U09419.1|MMU09419 Mus musculus retinoid X receptor inter... 184 2e-44
ref|NM_009473.1| Mus musculus nuclear receptor subfamily 1,... 184 2e-44
ref|XM_046419.3| Homo sapiens nuclear receptor subfamily 1,... 183 3e-44
gb|U20389.1|RNU20389 Rattus norvegicus orphan nuclear recep... 183 4e-44
dbj|AB073782.1|AB073782 Paralichthys olivaceus fRAR-1 mRNA ... 182 5e-44
gb|AF047467.1|AF047467 Sparus aurata thyroid hormone recept... 182 5e-44
dbj|AB073781.1|AB073781 Paralichthys olivaceus fRARg mRNA f... 182 8e-44
dbj|AB073783.1|AB073783 Paralichthys olivaceus fRARa mRNA f... 180 2e-43
emb|X62642.1|GGTHRB2 G.gallus mRNA for thyroid hormone rece... 179 5e-43
gb|U15548.1|MMBTTHR7 Mus musculus beta 2 thyroid hormone re... 178 1e-42
gb|AC093927.2| Homo sapiens chromosome 3 clone RP11-81I24, ... 177 2e-42
emb|AJ224341.1|CCAJ4341 Ceratitis capitata mRNA for ecdyson... 177 2e-42
gb|U75355.1|LCU75355 Lucilia cuprina ecdysteroid receptor (... 175 7e-42
gb|AF325360.1|AF325360 Calliphora vicina ecdysone receptor ... 174 2e-41
gb|U15547.1|MMBTTHR6 Mus musculus beta 2 thyroid hormone re... 172 6e-41
gb|L35266.1|BMOECDYREC Bombyx mori 20-hydroxy-ecdysone rece... 172 8e-41
gb|AF210733.1|AF210733 Aedes albopictus ecdysteroid recepto... 171 1e-40
dbj|D43943.1|BMOBMECRB1 Silkworm mRNA for ecdysone receptor... 170 2e-40
gb|U02021.1|AAU02021 Aedes aegypti ecdysteroid receptor mRN... 169 4e-40
gb|AF405205.1|AF405205 Oncorhynchus mykiss thyroid hormone ... 168 9e-40
gb|U29531.2|CFU29531 Choristoneura fumiferana ecdysteroid r... 166 4e-39
gb|AF092030.2|AF092030 Choristoneura fumiferana ecdysone re... 166 4e-39
gb|U19812.1|MSU19812 Manduca sexta ecdysone receptor homolo... 165 8e-39
ref|NM_005123.1| Homo sapiens nuclear receptor subfamily 1,... 165 1e-38
gb|U68233.1|HSU68233 Human farnesol receptor HRR-1 (HRR-1) ... 165 1e-38
ref|NM_005122.1| Homo sapiens nuclear receptor subfamily 1,... 162 5e-38
emb|Z30425.1|HSONHORE H.sapiens mRNA for orphan nuclear hor... 162 5e-38
ref|XM_042458.2| Homo sapiens nuclear receptor subfamily 1,... 162 5e-38
gb|AF092946.1|AF092946 Metapenaeus ensis nuclear hormone re... 161 1e-37
emb|X75163.1|XLRNAONST X.laevis mRNA for orphan nuclear rec... 161 1e-37
gb|AF384555.1|AF384555 Homo sapiens farnesol receptor (NR1H... 161 1e-37
gb|BC015261.1|BC015261 Mus musculus, nuclear receptor subfa... 160 2e-37
ref|NM_009108.1| Mus musculus nuclear receptor subfamily 1,... 160 2e-37
gb|U09416.1|MMU09416 Mus musculus retinoid X receptor inter... 160 2e-37
emb|AJ002941.1|RNAJ2941 Rattus norvegicus mRNA for retinoic... 160 3e-37
gb|AF047893.1|SSTHRB2 Salmo salar thyroid hormone receptor-... 159 4e-37
emb|AJ009937.1|HSAJ9937 Homo sapiens mRNA for nuclear hormo... 159 4e-37
ref|NM_033013.1| Homo sapiens nuclear receptor subfamily 1,... 159 5e-37
emb|AJ002940.1|RNAJ2940 Rattus norvegicus mRNA for retinoic... 159 5e-37
emb|Y09009.1|HVECR H.virescens mRNA for ecdysteroid receptor 159 7e-37
ref|NM_021745.1| Rattus norvegicus farnesoid X activated re... 159 7e-37
gb|U18374.1|RNU18374 Rattus norvegicus farnesoid X activate... 159 7e-37
gb|M95194.1|RANTHYHOR Rana catesbeiana thyroid hormone rece... 158 9e-37
emb|AL590145.2|AL590145 Zebrafish DNA sequence from clone R... 156 4e-36
gb|AF305201.1|AF305201 Xenopus laevis orphan nuclear recept... 155 8e-36
emb|X55069.1|HSCERBA8 Human c-erbA-1 gene, exon 8 for thyro... 155 1e-35
emb|AL590963.10|AL590963 Mouse DNA sequence from clone RP23... 154 1e-35
emb|X51548.1|DME75A Drosophila mRNA for ecdysone-inducible ... 154 2e-35
gb|AF164512.1|AF164512 Danio rerio vitamin D receptor (vdr)... 154 2e-35
dbj|AK002513.1|AK002513 Mus musculus adult male kidney cDNA... 154 2e-35
gb|AF132752.1|OMTHRA2 Oncorhynchus mykiss thyroid hormone r... 154 2e-35
dbj|AB037674.1|AB037674 Paralichthys olivaceus VDRa mRNA fo... 153 4e-35
emb|X55068.1|HSCERBA9 Human c-erbA-1 gene, exon 9 for thyro... 152 5e-35
gb|AF276753.1|AF276753 Gallus gallus xenobiotic receptor (C... 152 7e-35
emb|X04854.1|GGCERBA2 Chicken c-erb A gene exons 2-8 152 7e-35
dbj|AB037673.1|AB037673 Paralichthys olivaceus VDRb mRNA fo... 152 9e-35
gb|AF332551.1|AF332551 Bombyx mori orphan nuclear receptor ... 150 3e-34
ref|NM_009803.1| Mus musculus nuclear receptor subfamily 1,... 149 6e-34
gb|AF009327.1|AF009327 Mus musculus orphan nuclear hormone ... 149 6e-34
gb|AF290610.1|AF290610 Salmo salar retinoic acid receptor a... 149 7e-34
ref|NM_022941.1| Rattus norvegicus strain Fischer nuclear r... 149 7e-34
gb|AF133095.1|AF133095 Rattus norvegicus strain Wistar Kyot... 149 7e-34
gb|AF133094.1|AF133094 Rattus norvegicus strain Fischer nuc... 149 7e-34
gb|AF146776.2|SSTHRB3 Salmo salar thyroid hormone receptor-... 147 2e-33
gb|AF132753.1|OMTHRA3 Oncorhynchus mykiss thyroid hormone r... 147 2e-33
gb|U91846.1|XLU91846 Xenopus laevis vitamin D receptor mRNA... 147 2e-33
gb|U02620.1|GME75A Galleria mellonella ecdysteroid-induced ... 146 5e-33
gb|U09417.1|MMU09417 Mus musculus retinoid X receptor inter... 145 6e-33
gb|AF332552.1|AF332552 Bombyx mori orphan nuclear receptor ... 145 8e-33
gb|AF332550.1|AF332550 Bombyx mori orphan nuclear receptor ... 145 1e-32
dbj|AB024904.1|AB024904 Bombyx mori mRNA for nuclear hormon... 145 1e-32
gb|AF242868.1|AF242868 Synthetic construct ECFP-retinoic ac... 145 1e-32
gb|BC009288.1|BC009288 Homo sapiens, nuclear receptor subfa... 144 2e-32
ref|NM_006186.1| Homo sapiens nuclear receptor subfamily 4,... 144 2e-32
emb|X75918.1|HSNOT H.sapiens mRNA for NOT 144 2e-32
gb|AF011356.1|AF011356 Gallus gallus vitamin D receptor mRN... 144 2e-32
gb|U72345.1|RNU72345 Rattus norvegicus orphan nuclear hormo... 143 3e-32
ref|NM_013613.1| Mus musculus nuclear receptor subfamily 4,... 143 3e-32
gb|S53744.1|S53744 NURR1=Nur-related factor 1 [mice, brain,... 143 3e-32
gb|S77154.1|S77154 TINUR= NGFI-B/nur77 beta-type transcript... 143 4e-32
ref|NM_019328.1| Rattus norvegicus nuclear receptor subfami... 143 4e-32
gb|U01146.1|RRU01146 Rattus norvegicus Sprague Dawley nucle... 143 4e-32
gb|U63930.1|CFU63930 Choristoneura fumiferana hormone recep... 143 4e-32
emb|AJ002942.1|RNAJ2942 Rattus norvegicus mRNA for retinoic... 143 4e-32
emb|X87871.1|HSHNP4BGN H.sapiens mRNA for hepatocyte nuclea... 142 5e-32
gb|U12641.1|CJU12641 Coturnix japonica vitamin D receptor i... 142 5e-32
emb|X87872.1|HSHNF4CGN H.sapiens mRNA for hepatocyte nuclea... 142 5e-32
emb|X87870.1|HSHNF4AGN H.sapiens mRNA for hepatocyte nuclea... 142 5e-32
gb|AY049026.1|AY049025S2 Rana pipiens thyroid hormone recep... 142 7e-32
gb|U29942.1|DRU29942 Danio rerio retinoid X receptor epsilo... 142 7e-32
gb|AF165528.1|AF165528 Aedes aegypti nuclear hormone recept... 142 7e-32
ref|NM_000457.1| Homo sapiens hepatocyte nuclear factor 4, ... 142 9e-32
emb|X76930.1|HSHNF4 H.sapiens HNF4 mRNA for hepatocyte nucl... 142 9e-32
gb|AF032983.2|AF032983 Celuca pugilator retinoid X receptor... 142 9e-32
emb|Z49825.1|HSHNF4A H.sapiens mRNA for hepatocyte nuclear ... 142 9e-32
gb|AF264696.1|AF264696 Cloning vector pFB-ERV, complete seq... 141 1e-31
gb|AF098284.1|AF098284 Cloning vector pERV3, complete sequence 141 1e-31
ref|XM_053680.3| Homo sapiens retinoid X receptor, gamma (R... 140 2e-31
gb|BC012063.1|BC012063 Homo sapiens, Similar to retinoid X ... 140 2e-31
ref|NM_006917.1| Homo sapiens retinoid X receptor, gamma (R... 140 2e-31
gb|U38480.1|HSU38480 Human retinoid X receptor-gamma mRNA, ... 140 2e-31
dbj|AB030318.1|AB030318 Polyandrocarpa misakiensis PmRXR mR... 140 3e-31
ref|XM_050020.1| Homo sapiens similar to nuclear receptor s... 140 3e-31
gb|M24900.1|HUMEAR17A Human triiodothyronine recptor (THRA1... 140 3e-31
gb|AF035578.1|AF035578 Amblyomma americanum retinoid X rece... 139 8e-31
gb|M84819.1|MUSRXRG Mouse retinoid X receptor gamma (RXR-ga... 139 8e-31
ref|NM_009107.1| Mus musculus retinoid X receptor gamma (Rx... 139 8e-31
gb|S62948.1|S62948 retinoid-X receptor-gamma isoform 1 {alt... 139 8e-31
gb|AF323681.1|AF323681 Acropora millepora nuclear receptor ... 138 1e-30
gb|U09418.1|MMU09418 Mus musculus retinoid X receptor inter... 138 1e-30
emb|X66225.1|MMRXRGMR M.musculus mRNA for retinoid X recept... 138 1e-30
dbj|AB037379.1|AB037379 Tamias sibricus HNF-4 mRNA for hepa... 137 2e-30
emb|X70700.1|XLNGFIB X.laevis NGFI-B mRNA 137 2e-30
ref|NM_004133.2| Homo sapiens hepatocyte nuclear factor 4, ... 137 3e-30
emb|Z49826.2|HSHNF4G Homo sapiens mRNA for hepatocyte nucle... 137 3e-30
gb|AF263459.1|AF263459 Apis mellifera ultraspiracle protein... 136 4e-30
gb|S62952.1|S62952 retinoid-X receptor-gamma isoform 2 {alt... 136 5e-30
emb|Z37526.1|XLHNF4MR X.laevis HNF4 mRNA encoding hepatocyt... 136 5e-30
emb|X87366.1|XLRNARXR X.laevis mRNA for retinoic acid recep... 135 6e-30
ref|XM_005182.5| Homo sapiens hepatocyte nuclear factor 4, ... 135 1e-29
emb|X57133.1|RNHNF4 Rat mRNA for hepatocyte nuclear factor ... 134 1e-29
gb|AF305213.1|AF305213 Aedes aegypti ultraspiracle isoform-... 134 1e-29
ref|NM_022180.1| Rattus norvegicus Hepatic nuclear factor 4... 134 1e-29
dbj|D10554.1|RATHNF4CL Rattus norvegicus mRNA for hepatocyt... 134 1e-29
gb|AF305214.1|AF305214 Aedes aegypti ultraspiracle isoform-... 134 1e-29
gb|U06073.1|BMU06073 Bombyx mori 703 RXR type hormone recep... 134 2e-29
ref|NM_008261.1| Mus musculus hepatic nuclear factor 4 (Hnf... 134 2e-29
dbj|D29015.1|MUSHNF Mouse mRNA for hepatocyte nuclear factor 4 134 2e-29
emb|X89246.1|DMDHR38PR D.melanogaster mRNA for DHR38 protein 133 3e-29
gb|U36762.1|DMU36762 Drosophila melanogaster nuclear hormon... 133 3e-29
ref|NM_057772.1| Drosophila melanogaster Hormone receptor-l... 133 3e-29
emb|AJ002073.1|DMAJ2073 Drosophila melanogaster mRNA for ho... 133 3e-29
ref|NM_057771.1| Drosophila melanogaster Hormone receptor-l... 133 3e-29
gb|AF016368.1|AF016368 Choristoneura fumiferana molting hor... 132 5e-29
ref|NM_013920.1| Mus musculus hepatocyte nuclear factor 4, ... 132 7e-29
emb|AJ242626.1|MMU242626 Mus musculus mRNA for hepatocyte n... 132 7e-29
emb|AJ251542.1|TMO251542 Tenebrio molitor mRNA for USP prot... 132 9e-29
gb|AF045891.1|AF045891 Chironomus tentans ultraspiracle (US... 129 5e-28
gb|U29941.1|DRU29941 Danio rerio retinoid X receptor delta ... 129 5e-28
gb|AY007213.1| Lucilia cuprina ultraspiracle protein mRNA, ... 129 5e-28
emb|AJ223083.1|RAN223083 Rattus norvegicus mRNA for retinoi... 129 5e-28
gb|U44837.1|MSU44837 Manduca sexta MsUSP-1 protein (usp) mR... 129 8e-28
gb|AF009328.1|AF009328 Mus musculus orphan nuclear hormone ... 128 1e-27
gb|K00613.1|ACBERBADI avian erythroblastosis virus (aev), d... 128 1e-27
gb|AF367206.1| Dirofilaria immitis nuclear receptor nhr-7A ... 127 2e-27
gb|AF035577.1|AF035577 Amblyomma americanum retinoid X rece... 127 3e-27
gb|U82629.1|SSU82629 Sus scrofa retinoic acid receptor gamm... 127 3e-27
emb|X89247.1|BNDHR38PR B.mori mRNA for BHR38 protein 124 3e-26
gb|AF323688.1|AF323688 Acropora millepora nuclear receptor ... 122 6e-26
emb|X52591.1|DMHREC2C Drosophila melanogaster mRNA for ster... 122 6e-26
gb|AF323684.1|AF323684 Acropora millepora nuclear receptor ... 120 2e-25
gb|AF323683.1|AF323683 Acropora millepora nuclear receptor ... 120 2e-25
gb|AF170551.1|AF170551 Onchocerca volvulus nuclear hormone ... 120 4e-25
gb|AF059026.1|AF059026 Aedes aegypti nuclear transcription ... 119 8e-25
ref|NM_079409.1| Drosophila melanogaster Ecdysone-induced p... 117 2e-24
emb|X51549.1|DME75B Drosophila mRNA for ecdysone-inducible ... 117 2e-24
gb|AF059027.1|AF059027 Aedes aegypti nuclear transcription ... 117 3e-24
gb|AF367208.1| Dirofilaria immitis nuclear receptor nhr-7C ... 115 9e-24
emb|Y15606.1|DMHR38G Drosophila melanogaster HR38 gene 115 9e-24
gb|U19360.1|OVU19360 Onchocerca volvulus nuclear hormone re... 115 1e-23
ref|NG_000484.1| Drosophila melanogaster Hormone receptor-l... 114 2e-23
gb|AC093047.1| Drosophila melanogaster, chromosome 2L, regi... 114 2e-23
gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence... 114 2e-23
gb|AE003667.1|AE003667 Drosophila melanogaster genomic scaf... 114 2e-23
dbj|AB014889.1|AB014889 Mus musculus mRNA for Nurr2, comple... 111 2e-22
gb|U15544.1|MMBTTHR3 Mus musculus beta 2 thyroid hormone re... 110 4e-22
gb|AF020186.1|AF020186 Amblyomma americanum ecdysteroid rec... 109 5e-22
dbj|AB024905.1|AB024905 Bombyx mori mRNA for nuclear hormon... 109 6e-22
gb|AF020188.1|AF020188 Amblyomma americanum ecdysteroid rec... 108 1e-21
gb|AF020187.1|AF020187 Amblyomma americanum ecdsyteroid rec... 108 1e-21
gb|S60739.1|S60739 cEcRH=ecdysteroid receptor homolog [Chir... 107 2e-21
gb|AF456453.1|AF456453 Gallus gallus orphan nuclear recepto... 106 4e-21
gb|S60738.1|S60738 mE75=E75 B {B specific region} [Manduca ... 106 4e-21
ref|NM_060214.1| Ligand-binding domain of nuclear hormone r... 106 4e-21
gb|U15545.1|MMBTTHR4 Mus musculus beta 2 thyroid hormone re... 104 2e-20
gb|AC009255.4|AC009255 Drosophila melanogaster, chromosome ... 104 2e-20
gb|AF407573.1|AF407573 Taeniopygia guttata steroidogenic fa... 104 2e-20
ref|XM_080969.1| Ecdysone receptor, mRNA 104 2e-20
gb|AC007121.1|AC007121 Drosophila melanogaster, chromosome ... 104 2e-20
gb|AY075461.1| Drosophila melanogaster RE16656 full length ... 104 2e-20
gb|AE003784.2|AE003784 Drosophila melanogaster genomic scaf... 104 2e-20
gb|M74078.1|DROECR Drosophila melanogaster ecdysone recepto... 104 2e-20
gb|AC008339.2|AC008339 Drosophila melanogaster, chromosome ... 104 2e-20
gb|BC008819.1|BC008819 Homo sapiens, clone MGC:10474 IMAGE:... 103 3e-20
gb|U15546.1|MMBTTHR5 Mus musculus beta 2 thyroid hormone re... 103 4e-20
ref|NM_004959.1| Homo sapiens nuclear receptor subfamily 5,... 103 5e-20
emb|X98881.1|DMNHRL D.melanogaster mRNA for nuclear hormone... 103 5e-20
gb|AF238308.1|AF238308 Drosophila melanogaster nuclear rece... 103 5e-20
ref|NM_079471.1| Drosophila melanogaster Ecdysone-induced p... 103 5e-20
gb|U01087.1|DMU01087 Drosophila melanogaster Canton S E78A ... 103 5e-20
gb|AF206314.1|AF206313S2 Ambystoma mexicanum retinoic acid ... 102 6e-20
ref|NM_077313.1| nuclear hormone receptor 101 1e-19
gb|AF136979.1|AF136979 Sparus aurata estrogen receptor type... 101 1e-19
ref|NM_008050.1| Mus musculus nuclear receptor subfamily 5,... 101 1e-19
dbj|D10584.1|MUSELP Mus musculus mRNA for embryonal LTR bin... 101 1e-19
emb|AJ006039.1|SAU6039 Sparus aurata mRNA for estrogen rece... 101 1e-19
gb|AF273833.1|AF273833 Caenorhabditis elegans clone yk343f6... 101 2e-19
gb|AF401742.1|AF401742 Macropus eugenii steroidogenic facto... 101 2e-19
gb|AF273835.1|AF273835 Caenorhabditis elegans clone yk534g1... 101 2e-19
ref|NM_078135.1| nuclear hormone receptor nhr-91 101 2e-19
gb|AF273834.1|AF273834 Caenorhabditis elegans clone yk507a4... 101 2e-19
ref|NM_053344.1| Rattus norvegicus nuclear receptor subfami... 100 2e-19
dbj|AB000490.1|AB000490 Mouse mRNA for ELP3, complete cds 100 2e-19
gb|AF203911.1|AF203911 Equus caballus steroidogenic factor ... 100 2e-19
dbj|D13569.1|BOVAD4BP Bovine mRNA for Ad4BP 100 2e-19
gb|AF014926.1|AF014926 Danio rerio FTZ-F1 homolog (zFF1) mR... 100 2e-19
gb|U76388.1|HSU76388 Human steroidogenic factor 1 mRNA, com... 100 2e-19
gb|AY034061.1| Danio rerio nuclear receptor FF1aE mRNA, com... 100 2e-19
gb|U09504.1|MMU09504 Mus musculus orphan nuclear receptor R... 100 3e-19
ref|NM_011584.1| Mus musculus thyroid hormone receptor alph... 100 3e-19
gb|U12142.1|MMU12142 Mus musculus orphan nuclear receptor R... 100 3e-19
gb|U84399.1|SSU84399 Sus scrofa steroidogenic factor-1 SF-1... 100 3e-19
dbj|D16815.1|D16815 Homo sapiens mRNA for EAR-1r, complete cds 100 3e-19
dbj|AB002404.1|AB002404 Gallus gallus mRNA for SF-1/Ad4BP, ... 100 3e-19
gb|U04898.1|HSU04898 Human orphan hormone nuclear receptor ... 100 4e-19
gb|U20796.1|RNU20796 Rattus norvegicus nuclear receptor Rev... 100 4e-19
emb|X82777.1|RNREVERBB R.norvegicus mRNA for Rev-erb-Beta1 100 4e-19
gb|AY058575.1| Drosophila melanogaster LD26915 full length ... 100 5e-19
gb|AF299081.1|AF299081 Ovis aries steroidogenic factor 1 mR... 99 7e-19
gb|AF008302.1|AF008302 Ambystoma mexicanum developmental or... 99 7e-19
gb|AF136372.1|AF136372 Locusta migratoria RXR (RXR) mRNA, c... 99 7e-19
gb|L14611.1|HUMRZRA Human transcription factor RZR-alpha mR... 99 7e-19
gb|AF124981.1|AF124981 Bombyx mori nuclear receptor GRF (GR... 99 9e-19
emb|Z82994.1|MMZ82994 M.musculus mRNA for nuclear orphan re... 99 9e-19
ref|NM_013646.1| Mus musculus RAR-related orphan receptor a... 99 9e-19
gb|U53228.1|MMU53228 Mus musculus nuclear hormone receptor ... 99 9e-19
gb|U04897.1|HSU04897 Human orphan hormone nuclear receptor ... 99 9e-19
gb|U22437.1|MCU22437 Mus cookii steroid receptor mRNA, part... 99 9e-19
emb|X80258.1|GGREVERBB G.gallus REV-ERBb mRNA 99 9e-19
gb|AF288088.1|AF288088 Manduca sexta hormone receptor 4 mRN... 99 9e-19
gb|BC008831.1|BC008831 Homo sapiens, Similar to RAR-related... 99 9e-19
dbj|AB007453.1|AB007453 Chrysophrys major mRNA for estrogen... 99 9e-19
gb|BC003757.1|BC003757 Mus musculus, RAR-related orphan rec... 99 9e-19
ref|NM_002943.1| Homo sapiens RAR-related orphan receptor A... 99 9e-19
gb|U04899.1|HSU04899 Human orphan hormone nuclear receptor ... 99 9e-19
ref|NM_017323.1| Rattus norvegicus TR4 orphan receptor (Tr4... 99 1e-18
gb|L27513.1|RATTR4OR Rat TR4 orphan receptor mRNA, complete... 99 1e-18
ref|NM_003298.1| Homo sapiens nuclear receptor subfamily 2,... 99 1e-18
gb|L27586.1|HUMTR4OR Human TR4 orphan receptor mRNA, comple... 99 1e-18
gb|U10990.1|HSU10990 Human nuclear receptor hTAK1 (hTAK1) m... 99 1e-18
gb|AF342942.1|AF342942 Danio rerio Rev-Erb beta 2 mRNA, par... 99 1e-18
ref|XM_042906.2| Homo sapiens nuclear receptor subfamily 2,... 99 1e-18
gb|BC008989.1|BC008989 Mus musculus, Similar to nuclear rec... 99 1e-18
gb|S75970.1|S75970 mTR2R1=type II zinc finger DNA binding t... 99 1e-18
gb|U11688.1|MMU11688 Mus musculus CD-1 orphan receptor TAK1... 99 1e-18
dbj|AB017352.1|AB017352 Rana rugosa SF-1/Ad4BP mRNA, comple... 98 1e-18
gb|S82720.1|S82720 mROR alpha =orphan nuclear receptor [mic... 98 1e-18
gb|L26398.1|RATTR2OR Rattus norvegicus orphan receptor (TR2... 98 1e-18
dbj|D45910.1|D45910 Mus caroli mRNA for mROR4, complete cds 98 1e-18
gb|M21985.1|HUMSRTR2A Human steroid receptor TR2 mRNA, comp... 98 2e-18
gb|AY014863.1| Clarias gariepinus fushi-tarazu factor 1-B (... 98 2e-18
gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Ro... 98 2e-18
gb|AE003422.1|AE003422 Drosophila melanogaster genomic scaf... 98 2e-18
ref|NM_057433.1| Drosophila melanogaster ultraspiracle (usp... 98 2e-18
gb|AY069393.1| Drosophila melanogaster LD09973 full length ... 98 2e-18
gb|L26957.1|MUSTR2A Mus musculus orphan receptor (TR2) mRNA... 98 2e-18
gb|AF012304.1|AF012304 Homo sapiens nuclear mitotic apparat... 98 2e-18
dbj|AB063066.1|AB063066 Macaca fascicularis brain cDNA clon... 98 2e-18
emb|Y11436.1|MMTR211OR M.musculus mRNA for orphan receptor 98 2e-18
gb|U30482.1|MMU30482 Mus musculus TR2 (mTR2) mRNA, complete... 98 2e-18
ref|NG_000201.1| Drosophila melanogaster ultraspiracle (usp... 98 2e-18
gb|AC105055.2| Drosophila melanogaster X BAC RP98-5N9 (Rosw... 98 2e-18
gb|M29959.1|HUMTR29 Human steroid receptor (TR2-9) mRNA, co... 98 2e-18
ref|NG_000806.1| Drosophila melanogaster alpha actinin (Act... 98 2e-18
emb|X53379.1|DMCF1 Drosophila gene for chorion factor CF1 (... 98 2e-18
emb|AL031765.1|DMC22E5 Drosophila melanogaster cosmid clone... 98 2e-18
emb|X53417.1|DMXR2C Drosophila mRNA for XR2C 98 2e-18
ref|NM_003297.1| Homo sapiens nuclear receptor subfamily 2,... 98 2e-18
gb|M29960.1|HUMTR211 Human steroid receptor (TR2-11) mRNA, ... 98 2e-18
ref|NM_030676.1| Mus musculus nuclear receptor subfamily 5,... 97 3e-18
gb|M81385.1|MUSLRH1A Mouse liver receptor homologous protei... 97 3e-18
ref|NM_021724.1| Homo sapiens nuclear receptor subfamily 1,... 97 3e-18
gb|M24898.1|HUMEAR1A Human triiodothyronine recptor (THRA1,... 97 3e-18
emb|X72631.1|HSREVERB1 Homo sapiens mRNA for Rev-ErbAalpha ... 97 3e-18
ref|NM_021742.1| Rattus norvegicus nuclear receptor subfami... 97 3e-18
dbj|AB012961.1|AB012961 Rattus norvegicus mRNA for FTZ-F1 b... 97 3e-18
dbj|AB012960.1|AB012960 Rattus norvegicus mRNA for FTZ-F1 b... 97 3e-18
gb|U47280.1|RNU47280 Rattus norvegicus alpha1-fetoprotein t... 97 3e-18
gb|AC008655.7| Homo sapiens chromosome 19 clone CTB-191K22,... 97 3e-18
gb|AF013295.1|AF013295 Xenopus laevis developmental orphan ... 97 3e-18
dbj|AB016834.1|AB016834 Oryzias latipes mRNA for FTZ-F1, co... 97 4e-18
dbj|AB019246.1|AB019246 Homo sapiens mRNA for FTZ-F1 relate... 97 4e-18
ref|NM_011629.1| Mus musculus nuclear receptor subfamily 2,... 97 4e-18
gb|U28265.1|MMU28265 Mus musculus orphan receptor (Tr2-11) ... 97 4e-18
gb|AF201958.1|AF201958 Eleutherodactylus coqui thyroid horm... 97 4e-18
gb|U93553.1|HSU93553 Human alpha1-fetoprotein transcription... 97 4e-18
ref|XM_036634.2| Homo sapiens nuclear receptor subfamily 5,... 97 4e-18
gb|AF124247.1|AF124247 Homo sapiens hepatocytic transcripti... 97 4e-18
dbj|AB002403.1|AB002403 Gallus gallus mRNA for FTF/LRH-1, c... 97 4e-18
gb|AF047892.1|SSTHRB1 Salmo salar thyroid hormone receptor-... 96 6e-18
gb|AF274870.1|AF274870 Aedes aegypti nuclear receptor FTZ-F... 96 6e-18
gb|AY014862.1| Clarias gariepinus fushi tarazu factor 1-A (... 96 6e-18
dbj|AB006153.1|AB006153 Oncorhynchus mykiss mRNA for tFZR1,... 96 6e-18
emb|Y08640.1|MMTFAC M.musculus mRNA for nuclear orphan rece... 96 6e-18
ref|NM_003822.1| Homo sapiens nuclear receptor subfamily 5,... 96 7e-18
gb|U80251.1|HSU80251 Homo sapiens hepatocytic transcription... 96 7e-18
gb|AF203913.1|AF203913 Equus caballus steroidogenic factor ... 96 7e-18
gb|AF049102.1|AF049102 Homo sapiens alpha1-fetoprotein tran... 96 7e-18
gb|AF146343.1|AF146343 Homo sapiens CYP7A promoter binding ... 96 7e-18
dbj|AB035498.1|AB035498 Rana rugosa mRNA for FTZ-F1 alpha, ... 96 7e-18
gb|U05001.1|XLU05001 Xenopus laevis Ftz-F1-related orphan r... 96 7e-18
gb|U23144.1|XLU23144 Xenopus laevis FTZ-F1-related nuclear ... 96 7e-18
ref|NM_079419.1| Drosophila melanogaster ftz transcription ... 96 7e-18
gb|M63711.1|DROFTZF1A D.melanogaster FTZ-F1 mRNA, complete cds 96 7e-18
gb|M98397.1|DROSTEREC Drosophila melanogaster steroid recep... 96 7e-18
ref|NM_079601.1| Drosophila melanogaster seven up (svp), mRNA 96 7e-18
gb|M28863.1|DROSVP1 D.melanogaster seven-up protein (svp) t... 96 7e-18
gb|AF198086.1|AF198086 Danio rerio ff1b mRNA, complete cds 96 7e-18
ref|XM_005384.3| Homo sapiens RAR-related orphan receptor B... 96 1e-17
ref|NM_006914.1| Homo sapiens RAR-related orphan receptor B... 96 1e-17
emb|Y08639.1|HSTFAC H.sapiens mRNA for nuclear orphan recep... 96 1e-17
dbj|AB035499.1|AB035499 Rana rugosa mRNA for FTZ-F1 beta, c... 96 1e-17
gb|L14610.1|RATRZRB Rat transcription factor RZR-beta gene,... 96 1e-17
emb|Y08638.1|GGTFAC G.gallus mRNA for nuclear orphan recept... 96 1e-17
emb|AJ132599.1|MMU132599 Mus musculus partial LXR-alpha gen... 96 1e-17
gb|U32939.1|MMU32939 Mus musculus TR4 mRNA, partial cds 95 1e-17
>ref|NM_009380.1| Mus musculus thyroid hormone receptor beta (Thrb), mRNA
Length = 1837
Score = 947 bits (2449), Expect = 0.0
Identities = 459/475 (96%), Positives = 459/475 (96%)
Frame = +3
Query: 1 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 60
MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP
Sbjct: 303 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 482
Query: 61 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDEL 120
YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDEL
Sbjct: 483 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDEL 662
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF
Sbjct: 663 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 842
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
KKCIYVGMATDLVLDDSKRLA LQKSIGHKPEPTDEEWELIKTVT
Sbjct: 843 KKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVT 1022
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF
Sbjct: 1023EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 1202
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL
Sbjct: 1203AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 1382
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY
Sbjct: 1383GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 1562
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED
Sbjct: 1563INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 1727
>gb|S62756.1|S62756 hormone receptor beta subunit [mice, thyroid, mRNA, 1571 nt]
Length = 1571
Score = 724 bits (1870), Expect = 0.0
Identities = 352/368 (95%), Positives = 352/368 (95%)
Frame = +3
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII
Sbjct: 339 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 518
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA LQKSIGHKPE
Sbjct: 519 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPE 698
Query: 228 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 287
PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT
Sbjct: 699 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 878
Query: 288 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 347
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE
Sbjct: 879 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 1058
Query: 348 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 407
MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE
Sbjct: 1059MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 1238
Query: 408 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 1239KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1418
Query: 468 LFLEVFED 475
LFLEVFED
Sbjct: 1419LFLEVFED 1442
>gb|J03819.1|RATT3REC Rattus norvegicus (clone erb62) thyroid (T3) hormone receptor mRNA,
complete cds
Length = 4535
Score = 724 bits (1870), Expect = 0.0
Identities = 352/368 (95%), Positives = 352/368 (95%)
Frame = +1
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII
Sbjct: 529 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 708
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA LQKSIGHKPE
Sbjct: 709 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPE 888
Query: 228 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 287
PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT
Sbjct: 889 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 1068
Query: 288 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 347
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE
Sbjct: 1069KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 1248
Query: 348 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 407
MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE
Sbjct: 1249MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 1428
Query: 408 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 1429KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1608
Query: 468 LFLEVFED 475
LFLEVFED
Sbjct: 1609LFLEVFED 1632
>gb|J03933.1|RATCERBAB Rat thyroid receptor hormone beta (c-erbA-beta) mRNA, complete cds
Length = 2430
Score = 723 bits (1866), Expect = 0.0
Identities = 351/368 (95%), Positives = 352/368 (95%)
Frame = +2
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII
Sbjct: 530 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 709
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA LQKSIGHKPE
Sbjct: 710 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPE 889
Query: 228 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 287
PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGG+VDLEAFSHFT
Sbjct: 890 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGQVDLEAFSHFT 1069
Query: 288 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 347
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE
Sbjct: 1070KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 1249
Query: 348 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 407
MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE
Sbjct: 1250MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 1429
Query: 408 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 1430KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1609
Query: 468 LFLEVFED 475
LFLEVFED
Sbjct: 1610LFLEVFED 1633
>ref|XM_002986.3| Homo sapiens thyroid hormone receptor, beta (erythroblastic
leukemia viral (v-erb-a) oncogene homolog 2, avian)
(THRB), mRNA
Length = 1391
Score = 721 bits (1862), Expect = 0.0
Identities = 349/368 (94%), Positives = 352/368 (94%)
Frame = +3
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGKC+I
Sbjct: 258 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI 437
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA LQKSIGHKPE
Sbjct: 438 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPE 617
Query: 228 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 287
PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT
Sbjct: 618 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 797
Query: 288 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 347
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGE
Sbjct: 798 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 977
Query: 348 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 407
MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE
Sbjct: 978 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 1157
Query: 408 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 1158KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1337
Query: 468 LFLEVFED 475
LFLEVFED
Sbjct: 1338LFLEVFED 1361
>ref|NM_000461.1| Homo sapiens thyroid hormone receptor, beta (erythroblastic
leukemia viral (v-erb-a) oncogene homolog 2, avian)
(THRB), mRNA
Length = 1698
Score = 714 bits (1843), Expect = 0.0
Identities = 346/368 (94%), Positives = 349/368 (94%)
Frame = +1
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGKC+I
Sbjct: 565 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI 744
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA LQKSIGHKPE
Sbjct: 745 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPE 924
Query: 228 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 287
PTDEEWELIKTVTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFSHFT
Sbjct: 925 PTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 1104
Query: 288 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 347
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGE
Sbjct: 1105KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 1284
Query: 348 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 407
MAV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE
Sbjct: 1285MAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 1464
Query: 408 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL PP
Sbjct: 1465KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELLPP 1644
Query: 468 LFLEVFED 475
LFLEVFED
Sbjct: 1645LFLEVFED 1668
>emb|X04707.1|HSERBAR Human c-erb-A mRNA for thyroid hormone receptor
Length = 1698
Score = 714 bits (1843), Expect = 0.0
Identities = 346/368 (94%), Positives = 349/368 (94%)
Frame = +1
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGKC+I
Sbjct: 565 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI 744
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA LQKSIGHKPE
Sbjct: 745 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPE 924
Query: 228 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 287
PTDEEWELIKTVTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFSHFT
Sbjct: 925 PTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 1104
Query: 288 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 347
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGE
Sbjct: 1105KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 1284
Query: 348 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 407
MAV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE
Sbjct: 1285MAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 1464
Query: 408 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL PP
Sbjct: 1465KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELLPP 1644
Query: 468 LFLEVFED 475
LFLEVFED
Sbjct: 1645LFLEVFED 1668
>gb|M26747.1|HUMCERBA Human c-erbA mRNA, complete cds
Length = 1698
Score = 714 bits (1843), Expect = 0.0
Identities = 346/368 (94%), Positives = 349/368 (94%)
Frame = +1
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGKC+I
Sbjct: 565 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI 744
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA LQKSIGHKPE
Sbjct: 745 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPE 924
Query: 228 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 287
PTDEEWELIKTVTEAHVATNAQGSHWKQK KFLPEDIGQAPIVNAPEGGKVDLEAFSHFT
Sbjct: 925 PTDEEWELIKTVTEAHVATNAQGSHWKQKPKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 1104
Query: 288 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 347
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGE
Sbjct: 1105KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 1284
Query: 348 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 407
MAV RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE
Sbjct: 1285MAVIRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 1464
Query: 408 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL PP
Sbjct: 1465KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELLPP 1644
Query: 468 LFLEVFED 475
LFLEVFED
Sbjct: 1645LFLEVFED 1668
>emb|Z50188.1|GGBETATHR G.gallus mRNA for beta-thyroid hormone receptor
Length = 1171
Score = 701 bits (1810), Expect = 0.0
Identities = 339/371 (91%), Positives = 346/371 (92%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKYEGK
Sbjct: 31 SSMSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGK 210
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDKVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGH
Sbjct: 211 CVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTIGH 390
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
KPEPTDEEWELIK VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS
Sbjct: 391 KPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 570
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 571 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 750
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVE
Sbjct: 751 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVE 930
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
RIEK Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
Sbjct: 931 RIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 1110
Query: 465 FPPLFLEVFED 475
FPPLFLEVFED
Sbjct: 1111FPPLFLEVFED 1143
>emb|Z49151.1|CMBTHR C.moschata mRNA for beta-thyroid hormone receptor
Length = 1171
Score = 701 bits (1810), Expect = 0.0
Identities = 339/371 (91%), Positives = 346/371 (92%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKYEGK
Sbjct: 31 SSMSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGK 210
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDKVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGH
Sbjct: 211 CVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTIGH 390
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
KPEPTDEEWELIK VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS
Sbjct: 391 KPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 570
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 571 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 750
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVE
Sbjct: 751 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVE 930
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
RIEK Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
Sbjct: 931 RIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 1110
Query: 465 FPPLFLEVFED 475
FPPLFLEVFED
Sbjct: 1111FPPLFLEVFED 1143
>emb|X17504.1|GGTHRB Chicken mRNA for thyroid hormone receptor beta
Length = 1459
Score = 701 bits (1810), Expect = 0.0
Identities = 339/371 (91%), Positives = 346/371 (92%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKYEGK
Sbjct: 76 SSMSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGK 255
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDKVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK+IGH
Sbjct: 256 CVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTIGH 435
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
KPEPTDEEWELIK VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS
Sbjct: 436 KPEPTDEEWELIKIVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 615
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 616 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 795
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVE
Sbjct: 796 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVE 975
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
RIEK Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
Sbjct: 976 RIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 1155
Query: 465 FPPLFLEVFED 475
FPPLFLEVFED
Sbjct: 1156FPPLFLEVFED 1188
>gb|M65207.1|CHKTRB Chicken beta-thyroid hormone receptor (TR-beta) mRNA, complete cds
Length = 2129
Score = 686 bits (1770), Expect = 0.0
Identities = 334/371 (90%), Positives = 342/371 (92%)
Frame = +3
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKYEGK
Sbjct: 222 SSMSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGK 401
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDKVTRNQCQECRFKKCI+VGMATDLVLDDSKRLA LQK++ H
Sbjct: 402 CVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKTMVH 581
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
KPEPTDEEWELIK VTEAHVATNAQ SHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS
Sbjct: 582 KPEPTDEEWELIKIVTEAHVATNAQVSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 761
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLK CCMEIMSLRAAVRYDP+SETLTL
Sbjct: 762 QFTKIITPAITRVVDFAKKLPMFLELPCEDQIILLKVCCMEIMSLRAAVRYDPESETLTL 941
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGL CVE
Sbjct: 942 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLVCVE 1121
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
RIEK Q+ FLLAFEHYINYRKHHV HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
Sbjct: 1122RIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 1301
Query: 465 FPPLFLEVFED 475
FPPLFLEVFED
Sbjct: 1302FPPLFLEVFED 1334
>gb|L27344.1|RANCERBAB Rana catesbeiana (c-erbA-beta) mRNA, complete cds
Length = 1435
Score = 682 bits (1759), Expect = 0.0
Identities = 332/371 (89%), Positives = 342/371 (91%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGK
Sbjct: 7 SSMSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGK 186
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++
Sbjct: 187 CVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKDELQKTLVQ 366
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
KPEPT EEWELI+ VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS
Sbjct: 367 KPEPTPEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 546
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 547 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 726
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
NGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDDTEVALLQAVLLMSSDRPGL+ VE
Sbjct: 727 NGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDTEVALLQAVLLMSSDRPGLSSVE 906
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
RIEK Q+ FLLAFEHYINYRKH+V HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
Sbjct: 907 RIEKCQEGFLLAFEHYINYRKHNVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 1086
Query: 465 FPPLFLEVFED 475
FPPLFLEVFED
Sbjct: 1087FPPLFLEVFED 1119
>gb|M35360.1|XELBETAB X.laevis thyroid hormone receptor beta A5 mRNA, complete cds
Length = 1150
Score = 680 bits (1755), Expect = 0.0
Identities = 330/371 (88%), Positives = 342/371 (91%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGK
Sbjct: 7 SSMSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGK 186
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDKVTRNQCQECRFKKCI VGMATDLVLDD+KRLA +QKS+
Sbjct: 187 CVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQ 366
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
KPEPT EEWELI+ VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS
Sbjct: 367 KPEPTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 546
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 547 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 726
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
NGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGLA VE
Sbjct: 727 NGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLASVE 906
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
RIEK Q+ FLLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
Sbjct: 907 RIEKCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 1086
Query: 465 FPPLFLEVFED 475
FPPLFLEVFED
Sbjct: 1087FPPLFLEVFED 1119
>gb|M35359.1|XELBETA X.laevis thyroid hormone receptor beta A1 mRNA, complete cds
Length = 1138
Score = 679 bits (1753), Expect = 0.0
Identities = 329/368 (89%), Positives = 342/368 (92%)
Frame = +1
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
+GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGKC+I
Sbjct: 4 EGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVI 183
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
DKVTRNQCQECRFKKCI VGMATDLVLDD+KRLA +QKS+ KPE
Sbjct: 184 DKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQKPE 363
Query: 228 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 287
PT EEWELI+ VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS FT
Sbjct: 364 PTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFT 543
Query: 288 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 347
KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGE
Sbjct: 544 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGE 723
Query: 348 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 407
MAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGLA VERIE
Sbjct: 724 MAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLASVERIE 903
Query: 408 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
K Q+ FLLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP
Sbjct: 904 KCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 1083
Query: 468 LFLEVFED 475
LFLEVFED
Sbjct: 1084LFLEVFED 1107
>gb|M35361.1|XELBETAC X.laevis thyroid hormone receptor beta B1 mRNA, complete cds
Length = 1132
Score = 677 bits (1747), Expect = 0.0
Identities = 329/371 (88%), Positives = 341/371 (91%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGK
Sbjct: 7 SSMSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGK 186
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDKVTRNQCQECRFKKC VGMATDLVLDDSKRLA +QKSI
Sbjct: 187 CVIDKVTRNQCQECRFKKCKTVGMATDLVLDDSKRLAKRKLIEENREKRRKDEIQKSIVQ 366
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+PEPT EEWELI+ VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS
Sbjct: 367 RPEPTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 546
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 547 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 726
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
NGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGL+ VE
Sbjct: 727 NGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLSSVE 906
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
RIEK Q+ FLLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
Sbjct: 907 RIEKCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 1086
Query: 465 FPPLFLEVFED 475
FPPLFLEVFED
Sbjct: 1087FPPLFLEVFED 1119
>gb|M35362.1|XELBETAD X.laevis thyroid hormone receptor beta B2 mRNA, complete cds
Length = 1255
Score = 676 bits (1744), Expect = 0.0
Identities = 328/367 (89%), Positives = 340/367 (92%)
Frame = +1
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGKC+ID
Sbjct: 142 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVID 321
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
KVTRNQCQECRFKKC VGMATDLVLDDSKRLA +QKSI +PEP
Sbjct: 322 KVTRNQCQECRFKKCKTVGMATDLVLDDSKRLAKRKLIEENREKRRKDEIQKSIVQRPEP 501
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEWELI+ VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS FTK
Sbjct: 502 TQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTK 681
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEM
Sbjct: 682 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 861
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDDTEVALLQAVLLMSSDRPGL+ VERIEK
Sbjct: 862 AVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPGLSSVERIEK 1041
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+ FLLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1042CQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1221
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1222FLEVFED 1242
>gb|AF109732.1|AF109732 Danio rerio thyroid hormone receptor beta 1 mRNA, complete cds
Length = 2198
Score = 661 bits (1706), Expect = 0.0
Identities = 316/371 (85%), Positives = 339/371 (91%)
Frame = +3
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
+ + GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+L+P+Y+CKYEGK
Sbjct: 411 AMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGK 590
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++
Sbjct: 591 CVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREELQKTVWD 770
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+PEPT EEWE+I+ VTEAH+ATNAQG+HWKQKRKFLPEDIG APIVNAPEG KVD+EAFS
Sbjct: 771 RPEPTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLPEDIGSAPIVNAPEGNKVDIEAFS 950
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL
Sbjct: 951 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTL 1130
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
NGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQAV+L+SSDRPGL VE
Sbjct: 1131NGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSDRPGLTSVE 1310
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
RIE+ Q+ FLLAFEHYINYRKH V HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
Sbjct: 1311RIERCQEEFLLAFEHYINYRKHKVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 1490
Query: 465 FPPLFLEVFED 475
FPPLFLEVFED
Sbjct: 1491FPPLFLEVFED 1523
>gb|AF302252.1|AF302252 Salmo salar thyroid hormone receptor beta small isoform (TR-beta2)
mRNA, complete cds
Length = 1220
Score = 649 bits (1674), Expect = 0.0
Identities = 309/371 (83%), Positives = 336/371 (90%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
+ + GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+L+P+Y+CKYE K
Sbjct: 61 AMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAK 240
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
CIIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++
Sbjct: 241 CIIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWD 420
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+PEP+ EEW+LI+ VTEAH++TNAQG+HWKQKRKFLPEDIGQAP++NAPEG KVD+EAFS
Sbjct: 421 RPEPSQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLPEDIGQAPVINAPEGSKVDIEAFS 600
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 601 QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 780
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
NGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDD+EVALLQ V+L+SSDRPGL V+
Sbjct: 781 NGEMAVTRGQLKNGGLGVVSDAIFDLGLSLSSFHLDDSEVALLQTVILLSSDRPGLTSVD 960
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
RIE+ Q+ FLLAFEHYINYRKH V FWPKLLMKVTDLRMIGACHASRFLHMKVECP EL
Sbjct: 961 RIERCQEEFLLAFEHYINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHMKVECPNEL 1140
Query: 465 FPPLFLEVFED 475
FPPLFLEVFED
Sbjct: 1141FPPLFLEVFED 1173
>dbj|D45245.1|PAITHRB Flounder mRNA for thyroid hormone receptor beta, complete cds
Length = 1369
Score = 643 bits (1659), Expect = 0.0
Identities = 324/436 (74%), Positives = 357/436 (81%), Gaps = 11/436 (2%)
Frame = +2
Query: 51 MEQAWAVNQPYTC--SYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKK 108
+ AW+ P YP S+D L + + S+PA E P+ + + +
Sbjct: 11 LSAAWSQTSPLPLLGMYPDV*GGSEDEVLALNPTSMSEPA----ENCSPRWKD--EAIQN 172
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+L+P+Y+CKYEGKC+ID
Sbjct: 173 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVID 352
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
KVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++ + EP
Sbjct: 353 KVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRLEP 532
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFL---------PEDIGQAPIVNAPEGGKVD 279
T EEW+LI+ VTEAH+ATNAQG+HWKQKRKFL PE+IGQA + N PEG KVD
Sbjct: 533 TQEEWDLIRMVTEAHMATNAQGNHWKQKRKFLSAAGVKEDKPEEIGQASMANTPEGNKVD 712
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 713 IEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 892
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQAV+L+SSDRPG
Sbjct: 893 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSDRPG 1072
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVE 459
L+ VERIE Q+ FLLAFEHYINYRKH + HFWPKLLMKVTDLRMIGACHASRFLHMKVE
Sbjct: 1073LSSVERIEPCQEEFLLAFEHYINYRKHKLAHFWPKLLMKVTDLRMIGACHASRFLHMKVE 1252
Query: 460 CPTELFPPLFLEVFED 475
CPTELFPPLFLEVFED
Sbjct: 1253CPTELFPPLFLEVFED 1300
>gb|AF302251.1|AF302251 Salmo salar thyroid hormone receptor beta large isoform (TR-beta1)
mRNA, complete cds
Length = 1247
Score = 641 bits (1654), Expect = 0.0
Identities = 309/380 (81%), Positives = 336/380 (88%), Gaps = 9/380 (2%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
+ + GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+L+P+Y+CKYE K
Sbjct: 61 AMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAK 240
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
CIIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++
Sbjct: 241 CIIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWD 420
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFL---------PEDIGQAPIVNAPEG 275
+PEP+ EEW+LI+ VTEAH++TNAQG+HWKQKRKFL PEDIGQAP++NAPEG
Sbjct: 421 RPEPSQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLSAVGVKETKPEDIGQAPVINAPEG 600
Query: 276 GKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRY 335
KVD+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRY
Sbjct: 601 SKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRY 780
Query: 336 DPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 395
DP+SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSF+LDD+EVALLQ V+L+SS
Sbjct: 781 DPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGLSLSSFHLDDSEVALLQTVILLSS 960
Query: 396 DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLH 455
DRPGL V+RIE+ Q+ FLLAFEHYINYRKH V FWPKLLMKVTDLRMIGACHASRFLH
Sbjct: 961 DRPGLTSVDRIERCQEEFLLAFEHYINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLH 1140
Query: 456 MKVECPTELFPPLFLEVFED 475
MKVECP ELFPPLFLEVFED
Sbjct: 1141MKVECPNELFPPLFLEVFED 1200
>emb|Y00987.1|GGCERBAR Chicken c-erbA mRNA for thyroid hormone receptor
Length = 1538
Score = 632 bits (1629), Expect = e-179
Identities = 311/405 (76%), Positives = 340/405 (83%)
Frame = +1
Query: 71 KSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATG 130
+ K S LD LS+ L ++ Q S GYIPSYLDKDE CVVCGDKATG
Sbjct: 292 EQKPSTLD-PLSEPEDTRWLDGKRKRKSSQCLVKSSMSGYIPSYLDKDEQCVVCGDKATG 468
Query: 131 YHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMAT 190
YHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA
Sbjct: 469 YHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAM 648
Query: 191 DLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQG 250
DLVLDDSKR+A + KS+ H+P P+ EEWELI VTEAH +TNAQG
Sbjct: 649 DLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSPSAEEWELIHVVTEAHRSTNAQG 828
Query: 251 SHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 310
SHWKQKRKFLPEDIGQ+P+ + P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF EL
Sbjct: 829 SHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEL 1008
Query: 311 PCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDL 370
PCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEMAV R QLKNGGLGVVSDAIFDL
Sbjct: 1009PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDL 1188
Query: 371 GMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 430
G SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK Q+++LLAFEHYINYRKH++ H
Sbjct: 1189GKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEKCQETYLLAFEHYINYRKHNIPH 1368
Query: 431 FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED
Sbjct: 1369FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 1503
>emb|Z50080.1|CMATHREC C.moschata mRNA for alpha-thyroid hormone receptor
Length = 1205
Score = 625 bits (1612), Expect = e-177
Identities = 308/402 (76%), Positives = 337/402 (83%)
Frame = +1
Query: 71 KSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATG 130
+ K S LD LS+ L ++ Q S GYIPSYLDKDE CVVCGDKATG
Sbjct: 1 EQKPSTLD-PLSEPEDTRWLDGKRKRKSSQCLVKSSMSGYIPSYLDKDEQCVVCGDKATG 177
Query: 131 YHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMAT 190
YHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA
Sbjct: 178 YHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAM 357
Query: 191 DLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQG 250
DLVLDDSKR+A + KS+ H+P P+ EEWELI VTEAH +TNAQG
Sbjct: 358 DLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSPSAEEWELIHVVTEAHRSTNAQG 537
Query: 251 SHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 310
SHWKQKRKFLPEDIGQ+P+ + P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF EL
Sbjct: 538 SHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEL 717
Query: 311 PCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDL 370
PCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEMAV R QLKNGGLGVVSDAIFDL
Sbjct: 718 PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDL 897
Query: 371 GMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 430
G SLS+FNLDDTEVALLQAVLLMSSDR GL CV++IEK Q+++LLAFEHYINYRKH++ H
Sbjct: 898 GKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEKCQETYLLAFEHYINYRKHNIPH 1077
Query: 431 FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEV 472
FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEV
Sbjct: 1078FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEV 1203
>emb|AJ002363.1|APAJ2363 Aptenodytes patagonicus mRNA for alpha-thyroid hormone receptor
Length = 1205
Score = 623 bits (1607), Expect = e-176
Identities = 308/402 (76%), Positives = 336/402 (82%)
Frame = +1
Query: 71 KSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATG 130
+ K S LD LS+ L ++ Q S GYIPSYLDKDE CVVCGDKATG
Sbjct: 1 EQKPSTLD-PLSEPEDTRWLDGKRKRKSSQCLVKSSMSGYIPSYLDKDEQCVVCGDKATG 177
Query: 131 YHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMAT 190
YHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA
Sbjct: 178 YHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAM 357
Query: 191 DLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQG 250
DLVLDDSKR+A + KS+ H+P P+ EEWELI VTEAH +TNAQG
Sbjct: 358 DLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPNPSAEEWELIHVVTEAHRSTNAQG 537
Query: 251 SHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 310
SHWKQKRKFLPEDIGQ+P+ + P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF EL
Sbjct: 538 SHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEL 717
Query: 311 PCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDL 370
PCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEMAV R QLKNGGLGVVSDAIFDL
Sbjct: 718 PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDL 897
Query: 371 GMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 430
G SLS+FNLDDTEVALLQAVLLMSSDR GL CVE+IEK Q+++LLAFEHYINYRKH++ H
Sbjct: 898 GKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVEKIEKCQETYLLAFEHYINYRKHNIPH 1077
Query: 431 FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEV 472
FWPKLLMKVTDLRMI ACHASRFLHMKVECPTELFPPLFLEV
Sbjct: 1078FWPKLLMKVTDLRMIRACHASRFLHMKVECPTELFPPLFLEV 1203
>emb|X07750.1|MMCERBA1 Mouse c-erbA alpha1 mRNA for thyroid hormone receptor
Length = 1233
Score = 621 bits (1602), Expect = e-176
Identities = 297/376 (78%), Positives = 329/376 (86%)
Frame = +1
Query: 100 QSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSC 159
Q P S GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSC
Sbjct: 94 QCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSC 273
Query: 160 KYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQ 219
KY+ C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A +
Sbjct: 274 KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMI 453
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+S+ +PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVD
Sbjct: 454 RSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVD 633
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
LEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 634 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPES 813
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
+TLTL+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR G
Sbjct: 814 DTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 993
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVE 459
L CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVE
Sbjct: 994 LLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVE 1173
Query: 460 CPTELFPPLFLEVFED 475
CPTELFPPLFLEVFED
Sbjct: 1174CPTELFPPLFLEVFED 1221
>emb|X12744.1|RNCERBATR Rat mRNA for c-erb-A thyroid hormone receptor
Length = 1775
Score = 621 bits (1602), Expect = e-176
Identities = 297/376 (78%), Positives = 329/376 (86%)
Frame = +3
Query: 100 QSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSC 159
Q P S GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSC
Sbjct: 60 QCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSC 239
Query: 160 KYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQ 219
KY+ C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A +
Sbjct: 240 KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMI 419
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+S+ +PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVD
Sbjct: 420 RSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVD 599
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
LEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 600 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPES 779
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
+TLTL+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR G
Sbjct: 780 DTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 959
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVE 459
L CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVE
Sbjct: 960 LLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVE 1139
Query: 460 CPTELFPPLFLEVFED 475
CPTELFPPLFLEVFED
Sbjct: 1140CPTELFPPLFLEVFED 1187
>gb|M18028.1|RATTHR Rat thyroid hormone receptor mRNA, complete cds
Length = 2079
Score = 620 bits (1598), Expect = e-175
Identities = 296/376 (78%), Positives = 328/376 (86%)
Frame = +1
Query: 100 QSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSC 159
Q P S GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSC
Sbjct: 418 QCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSC 597
Query: 160 KYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQ 219
KY+ C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A +
Sbjct: 598 KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMI 777
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+S+ +PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVD
Sbjct: 778 RSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVD 957
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
LEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 958 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPES 1137
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
+TLTL+GEM V R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR G
Sbjct: 1138DTLTLSGEMTVKRKQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 1317
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVE 459
L CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVE
Sbjct: 1318LLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVE 1497
Query: 460 CPTELFPPLFLEVFED 475
CPTELFPPLFLEVFED
Sbjct: 1498CPTELFPPLFLEVFED 1545
>emb|X51983.1|MMCERBA Mouse c-erbA-alpha mRNA for thyroid hormone receptor
Length = 1440
Score = 619 bits (1597), Expect = e-175
Identities = 296/376 (78%), Positives = 328/376 (86%)
Frame = +2
Query: 100 QSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSC 159
Q P S GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSC
Sbjct: 98 QCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSC 277
Query: 160 KYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQ 219
KY+ C+IDK+TRN CQ CRFKKCI VGMA DLVLDDSKR+A +
Sbjct: 278 KYDSCCVIDKITRNHCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMI 457
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+S+ +PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVD
Sbjct: 458 RSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVD 637
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
LEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 638 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPES 817
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
+TLTL+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR G
Sbjct: 818 DTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 997
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVE 459
L CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVE
Sbjct: 998 LLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVE 1177
Query: 460 CPTELFPPLFLEVFED 475
CPTELFPPLFLEVFED
Sbjct: 1178CPTELFPPLFLEVFED 1225
>gb|L76285.1|XELXLTH Xenopus laevis thyroid hormone alpha B receptor mRNA, complete cds
Length = 1406
Score = 619 bits (1597), Expect = e-175
Identities = 298/367 (81%), Positives = 325/367 (88%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKY+G CIID
Sbjct: 266 GYIPSYLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 445
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ +PEP
Sbjct: 446 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRVRRRKEEMIKTLQQRPEP 625
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
+ EEWELI+ VTEAH +TNAQGSHWKQ+RKFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 626 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 805
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL+GEM
Sbjct: 806 IITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 985
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 986 AVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1165
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1166CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1345
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1346FLEVFED 1366
>gb|M35343.1|XELTHYA Xenopus laevis thyroid hormone receptor alpha A mRNA, complete cds
Length = 1406
Score = 618 bits (1593), Expect = e-175
Identities = 297/367 (80%), Positives = 324/367 (87%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKY+G CIID
Sbjct: 266 GYIPSYLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 445
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDD KR+A + K++ +PEP
Sbjct: 446 KITRNQCQLCRFKKCIAVGMAMDLVLDDGKRVAKRKLIEENRQRRRKEEMIKTLQQRPEP 625
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
+ EEWELI+ VTEAH +TNAQGSHWKQ+RKFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 626 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 805
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL+GEM
Sbjct: 806 IITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 985
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 986 AVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1165
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1166CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1345
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1346FLEVFED 1366
>emb|X17385.1|XLTHR Xenopus mRNA for thyroid hormone receptor
Length = 2301
Score = 617 bits (1592), Expect = e-175
Identities = 297/367 (80%), Positives = 325/367 (87%)
Frame = +1
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPS+LDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKY+G CIID
Sbjct: 604 GYIPSHLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 783
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ +PEP
Sbjct: 784 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRQRRRKEEMIKTLQQRPEP 963
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
+ EEWELI+ VTEAH +TNAQGSHWKQ+RKFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 964 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 1143
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL+GEM
Sbjct: 1144IITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 1323
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 1324AVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1503
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1504CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1683
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1684FLEVFED 1704
>emb|AJ005797.1|SSAJ5797 Sus scrofa mRNA for thyroid hormone receptor alpha 1 (c-erbA-alpha
1)
Length = 1906
Score = 617 bits (1592), Expect = e-175
Identities = 294/367 (80%), Positives = 326/367 (88%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 257 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 436
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 437 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 616
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 617 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 796
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 797 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 976
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 977 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1156
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1157SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1336
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1337FLEVFED 1357
>gb|L06064.1|RANCERBAA Rana catesbeiana c-erbA-alpha mRNA, complete cds
Length = 1490
Score = 617 bits (1592), Expect = e-175
Identities = 298/367 (81%), Positives = 323/367 (87%)
Frame = +3
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYL KDE CVVC DKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKY+G CIID
Sbjct: 165 GYIPSYLTKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 344
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + K++ +PEP
Sbjct: 345 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKTLQQRPEP 524
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
+ EEWELI+ VTEAH +TNAQGSHWKQ+RKFLPEDIGQ P+ + P+ KVDLEAFS FTK
Sbjct: 525 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQNPMASMPDSDKVDLEAFSEFTK 704
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL+GEM
Sbjct: 705 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 884
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 885 AVKREQLKNGGLGVVSDAIFDLGRSLSAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1064
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1065CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1244
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1245FLEVFED 1265
>emb|Z68308.1|OAERBAAL1 O.aries mRNA for thyroid hormone receptor alpha1
Length = 2463
Score = 617 bits (1592), Expect = e-175
Identities = 294/367 (80%), Positives = 326/367 (88%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 635 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 814
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 815 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 994
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 995 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1174
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 1175 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1354
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1355 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1534
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1535 SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1714
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1715 FLEVFED 1735
>gb|BC008851.1|BC008851 Homo sapiens, thyroid hormone receptor, clone MGC:14305
IMAGE:4137980, mRNA, complete cds
Length = 3053
Score = 617 bits (1591), Expect = e-175
Identities = 294/367 (80%), Positives = 326/367 (88%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 776 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 955
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 956 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 1135
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 1136 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1315
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 1316 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1495
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1496 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1675
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1676 SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1855
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1856 FLEVFED 1876
>gb|M24748.1|HUMTHRA1A Human thyroid hormone receptor alpha 1 (TR-alpha-1) gene, complete
cds
Length = 1876
Score = 617 bits (1591), Expect = e-175
Identities = 294/367 (80%), Positives = 326/367 (88%)
Frame = +1
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 193 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 372
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 373 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 552
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 553 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 732
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 733 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 912
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 913 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1092
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1093SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1272
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1273FLEVFED 1293
>emb|X55005.1|HSCERBAR Homo sapiens mRNA for thyroid hormone receptor alpha 1 THRA1,
(c-erbA-1 gene)
Length = 2288
Score = 617 bits (1591), Expect = e-175
Identities = 294/367 (80%), Positives = 326/367 (88%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 587 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 766
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 767 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 946
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 947 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1126
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 1127IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1306
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1307AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1486
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1487SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 1666
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1667FLEVFED 1687
>gb|M35344.1|XELTHYB X.laevis thyroid hormone receptor alpha B mRNA, complete cds
Length = 1406
Score = 612 bits (1577), Expect = e-173
Identities = 296/367 (80%), Positives = 322/367 (87%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVC DKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKY+G CIID
Sbjct: 266 GYIPSYLDKDEPCVVCSDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIID 445
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DL LDDSKR+A + K++ PEP
Sbjct: 446 KITRNQCQLCRFKKCIAVGMAMDLDLDDSKRVAKRKLIEEDRVRRRKEEMIKTLQQCPEP 625
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
+ EEWELI+ VTEAH +TNAQGSHWKQ+RKFLPEDIGQ+P+ + P+G KVDLEAFS FTK
Sbjct: 626 SSEEWELIRIVTEAHRSTNAQGSHWKQRRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTK 805
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF EL CEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL+GEM
Sbjct: 806 IITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEM 985
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIFDLG SL++FNLDDTEVALLQAVLLMSSDR GL C ++IEK
Sbjct: 986 AVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTGLICTDKIEK 1165
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHAS FLHMKVECPTELFPPL
Sbjct: 1166CQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASCFLHMKVECPTELFPPL 1345
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1346FLEVFED 1366
>emb|AJ002300.1|PAAJ2300 Pygoscelis adeliae mRNA for thyroid hormone receptor alpha
Length = 1205
Score = 610 bits (1573), Expect = e-173
Identities = 303/402 (75%), Positives = 331/402 (81%)
Frame = +1
Query: 71 KSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATG 130
+ K S LD LS+ L ++ Q S GYIPSYLDKDE CVVCGDKATG
Sbjct: 1 EQKPSTLD-PLSEPEDTRWLDGKRKRKSSQCLVKSSMSGYIPSYLDKDEQCVVCGDKATG 177
Query: 131 YHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMAT 190
YHYRCITC GCKGFFRRTIQK+LHP+YSCKY+G C+IDK+TRNQCQ CRFKKCI VGMA
Sbjct: 178 YHYRCITCAGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAM 357
Query: 191 DLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQG 250
DLVL DSKR+A + KS+ H+P P+ EEWELI VTEAH +TNAQG
Sbjct: 358 DLVLYDSKRVAKRKLIEENRERRRKEEMIKSLQHRPNPSAEEWELIHVVTEAHRSTNAQG 537
Query: 251 SHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 310
SHWKQKRKFLPEDIGQ+P+ + P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF EL
Sbjct: 538 SHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEL 717
Query: 311 PCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDL 370
PCEDQIILLKGCCMEIMSLRAAVRYDP+ TLTL+GEMAV R QLKNGGL VVSDAIFDL
Sbjct: 718 PCEDQIILLKGCCMEIMSLRAAVRYDPEGGTLTLSGEMAVKREQLKNGGLRVVSDAIFDL 897
Query: 371 GMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 430
G SLS+FNLDDTEVALLQAVLLMSSDR GL CVE+IEK Q+++LLAFEHYINYRKH++ H
Sbjct: 898 GKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVEKIEKCQETYLLAFEHYINYRKHNIPH 1077
Query: 431 FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEV 472
FWPKLLMKVTDLRMI ACHASRFLHMKVECPTELFPPLFLEV
Sbjct: 1078FWPKLLMKVTDLRMIRACHASRFLHMKVECPTELFPPLFLEV 1203
>emb|Z68307.1|OAERBABT1 O.aries mRNA for thyroid hormone receptor beta1
Length = 1592
Score = 607 bits (1566), Expect = e-172
Identities = 296/335 (88%), Positives = 306/335 (90%)
Frame = +1
Query: 92 EEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK 151
+ P Q + KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK
Sbjct: 586 QSAPSAQAFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK 765
Query: 152 SLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXX 211
+LHPSYSCKYEGKC+IDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA
Sbjct: 766 NLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENRE 945
Query: 212 XXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVN 271
LQ+S+GHKPEPTD+EWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVN
Sbjct: 946 KRRREELQRSMGHKPEPTDQEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVN 1125
Query: 272 APEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRA 331
APEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRA
Sbjct: 1126APEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRA 1305
Query: 332 AVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVL 391
AVRYDP+SETLTLNGEMAVTR QLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVL
Sbjct: 1306AVRYDPESETLTLNGEMAVTRRQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVL 1485
Query: 392 LMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKH 426
LMSSDRPGLACVERIEKYQDSFLLAFEHYINYR++
Sbjct: 1486LMSSDRPGLACVERIEKYQDSFLLAFEHYINYRRN 1590
>gb|U54796.1|DRU54796 Danio rerio thyroid hormone receptor alpha 1 (TRa1) mRNA, complete
cds
Length = 2200
Score = 605 bits (1561), Expect = e-171
Identities = 294/367 (80%), Positives = 322/367 (87%)
Frame = +3
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GY+PSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKY+ CIID
Sbjct: 498 GYVPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDSCCIID 677
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRF+KCI VGMA DLVLDDSKR+A + K++ ++PEP
Sbjct: 678 KITRNQCQLCRFRKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKKEEIVKTLHNRPEP 857
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EWELI+ VTEAH TNAQG HWKQKRKFLPEDIGQ+P + + KVDLEAFS FTK
Sbjct: 858 TVSEWELIRMVTEAHRHTNAQGPHWKQKRKFLPEDIGQSPAPTS-DNDKVDLEAFSEFTK 1034
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEM
Sbjct: 1035IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEM 1214
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV+R QLKNGGLGVVSDAIFDLG SLS FNLDD+EVALLQAVLLMSSDR GL CVE+IEK
Sbjct: 1215AVSREQLKNGGLGVVSDAIFDLGKSLSQFNLDDSEVALLQAVLLMSSDRSGLTCVEKIEK 1394
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+ +LLAFEHYIN+RKH+++HFWPKLLMKVT+LRMIGACHASRFLHMKVECPTELFPPL
Sbjct: 1395CQEMYLLAFEHYINHRKHNISHFWPKLLMKVTNLRMIGACHASRFLHMKVECPTELFPPL 1574
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1575FLEVFED 1595
>gb|AF146775.1|AF146775 Salmo salar thyroid hormone receptor alpha (TR-alpha) mRNA,
complete cds
Length = 1436
Score = 605 bits (1559), Expect = e-171
Identities = 293/368 (79%), Positives = 320/368 (86%)
Frame = +3
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
+GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+G CII
Sbjct: 276 QGYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYDGCCII 455
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
DK+TRNQCQ CRF+KCI V MA DLVLDDSKR+A + K++ +PE
Sbjct: 456 DKITRNQCQLCRFRKCIAVCMAMDLVLDDSKRVAKRRLIEENREKRKKDEIVKTLQARPE 635
Query: 228 PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFT 287
P EWELI+ VTEAH TNAQGSHWKQKRKFLPEDIGQ+P P+G KVDLEAFS FT
Sbjct: 636 PDSSEWELIRHVTEAHRHTNAQGSHWKQKRKFLPEDIGQSPRAPTPDGDKVDLEAFSEFT 815
Query: 288 KIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGE 347
KIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GE
Sbjct: 816 KIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGE 995
Query: 348 MAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIE 407
MAV R QLKNGGLGVVSDAIFDLG SL+ FNLDD+EVALLQAVLLMSSDR GL V++IE
Sbjct: 996 MAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDSEVALLQAVLLMSSDRSGLTLVDKIE 1175
Query: 408 KYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
K Q+++LLAFEHYIN+RKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECP ELFPP
Sbjct: 1176KCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPP 1355
Query: 468 LFLEVFED 475
LFLEVFED
Sbjct: 1356LFLEVFED 1379
>dbj|D16462.1|PAITHRAB Japanese flounder mRNA for thyroid hormone receptor alpha B,
complete cds
Length = 1273
Score = 602 bits (1552), Expect = e-170
Identities = 295/392 (75%), Positives = 327/392 (83%), Gaps = 5/392 (1%)
Frame = +1
Query: 89 HLPEEKPFPQVQSPPH----SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGF 144
H P +P+ + + GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGF
Sbjct: 10 HTPHMAQWPEKEEEEQPMFGEEYTGYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGF 189
Query: 145 FRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXX 204
FRRTIQK+LHPSYSCKY+ CIIDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 190 FRRTIQKNLHPSYSCKYDCCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRR 369
Query: 205 XXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDI 264
+ K++ ++PEPT EWELI+ VTEAH TNAQG+ WKQKRKFLP+ I
Sbjct: 370 LIEENRERRKKEEIVKTLQNRPEPTGAEWELIRMVTEAHRHTNAQGAQWKQKRKFLPDKI 549
Query: 265 GQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCE-LPCEDQIILLKGCC 323
GQ+P+ +G KVDLEAFS FTKIITPAITRVVDFAKKLPMF E LPCEDQIILLKGCC
Sbjct: 550 GQSPVAPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEQLPCEDQIILLKGCC 729
Query: 324 MEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTE 383
MEIMSLRAA+RYDP+SETLTL+GEMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTE
Sbjct: 730 MEIMSLRAAMRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTE 909
Query: 384 VALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
VALLQAVLLMSSDR GL C+++IEK Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLR
Sbjct: 910 VALLQAVLLMSSDRSGLTCMDKIEKCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLR 1089
Query: 444 MIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MIGACHASRFLHMKVECP ELFPPLFLEVFED
Sbjct: 1090MIGACHASRFLHMKVECPNELFPPLFLEVFED 1185
>dbj|D16461.1|PAITHRAA1 Japanese flounder mRNA for thyroid hormone receptor alpha A,
complete cds
Length = 1411
Score = 599 bits (1545), Expect = e-169
Identities = 290/367 (79%), Positives = 316/367 (86%)
Frame = +3
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEG CIID
Sbjct: 291 GYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIID 470
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +PEP
Sbjct: 471 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKREEMVRTLQIRPEP 650
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
EWELI+ T+AH TNAQGS WKQKRKFL +DIGQ+P+V +G KVDLEAFS FTK
Sbjct: 651 DTAEWELIRMATDAHRHTNAQGSSWKQKRKFLSDDIGQSPMVPTSDGDKVDLEAFSEFTK 830
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
I+TPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLN EM
Sbjct: 831 IMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNSEM 1010
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIFDLG L FNLDDTEVAL+QAVLLMSSDR G C+E+IE+
Sbjct: 1011AVKREQLKNGGLGVVSDAIFDLGKELGQFNLDDTEVALMQAVLLMSSDRSGHQCMEKIEQ 1190
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVECP+ELFPPL
Sbjct: 1191CQEAYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPSELFPPL 1370
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1371FLEVFED 1391
>gb|AF143296.1|AF143296 Hippoglossus hippoglossus thyroid hormone receptor-alpha mRNA,
complete cds
Length = 1392
Score = 597 bits (1538), Expect = e-168
Identities = 289/367 (78%), Positives = 317/367 (85%)
Frame = +1
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYL+KDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKYEG CIID
Sbjct: 280 GYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIID 459
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +++ +PEP
Sbjct: 460 KITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKREEMVRTLQVRPEP 639
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
EWELI+ T+AH TNAQGS WKQKRKFL +DIGQ P+V +G KVDLEAFS FTK
Sbjct: 640 DTAEWELIRMATDAHRHTNAQGSSWKQKRKFLSDDIGQGPMVPTSDGDKVDLEAFSEFTK 819
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
I+TPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEM
Sbjct: 820 IMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEM 999
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVAL+QAVLLMSSDR GL +E+IE+
Sbjct: 1000AVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVALMQAVLLMSSDRSGLTSLEKIEQ 1179
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
Q+++LLAFEHYINYRKH++ HFWPKLLMKVTDLRMIGACHASRFLHMKVEC +ELFPPL
Sbjct: 1180CQEAYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECSSELFPPL 1359
Query: 469 FLEVFED 475
FLEVFED
Sbjct: 1360FLEVFED 1380
>gb|M17870.1|ACBERBAR Avian erythroblastosis virus strain ES4, mutant td r12 polyprotein
gene, partial cds
Length = 1751
Score = 585 bits (1507), Expect = e-165
Identities = 285/362 (78%), Positives = 310/362 (84%)
Frame = +3
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQK+LHP+YSC Y+G
Sbjct: 654 SSMSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGC 833
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H
Sbjct: 834 CVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQH 1013
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+P P+ EEWELI VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS
Sbjct: 1014 RPSPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFS 1193
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 1194 EFTKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 1373
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
+GEMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV+
Sbjct: 1374 SGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVD 1553
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
+IEK Q+S+LLAFEHYINYRKH++ HFWPKLLMKV DLRMIGA HASRFLHMKVECPTEL
Sbjct: 1554 KIEKCQESYLLAFEHYINYRKHNIPHFWPKLLMKVADLRMIGAYHASRFLHMKVECPTEL 1733
Query: 465 FP 466
P
Sbjct: 1734 SP 1739
>emb|X12707.1|AEVPDNA Avian erythroblastosis virus provirus DNA (pCR-1)
Length = 6373
Score = 582 bits (1499), Expect = e-164
Identities = 284/362 (78%), Positives = 309/362 (84%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQK+LHP+YSC Y+G
Sbjct: 2338 SSMSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGC 2517
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H
Sbjct: 2518 CVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQH 2697
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+P P+ EEWELI VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS
Sbjct: 2698 RPSPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFS 2877
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 2878 EFTKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 3057
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
+GEMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV+
Sbjct: 3058 SGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVD 3237
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
+IEK Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL
Sbjct: 3238 KIEKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTEL 3417
Query: 465 FP 466
P
Sbjct: 3418 SP 3423
>emb|Y00044.1|REAEVERB Avian erythroblastosis virus gag, erbA and erbB sequences
Length = 2354
Score = 582 bits (1499), Expect = e-164
Identities = 284/362 (78%), Positives = 309/362 (84%)
Frame = +2
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQK+LHP+YSC Y+G
Sbjct: 572 SSMSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGC 751
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H
Sbjct: 752 CVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQH 931
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+P P+ EEWELI VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS
Sbjct: 932 RPSPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFS 1111
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 1112EFTKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 1291
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
+GEMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV+
Sbjct: 1292SGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVD 1471
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
+IEK Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL
Sbjct: 1472KIEKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTEL 1651
Query: 465 FP 466
P
Sbjct: 1652SP 1657
>gb|M32090.1|ACBERBABG Avian erythroblastosis virus gag, erbA and erbB sequences
Length = 1944
Score = 582 bits (1499), Expect = e-164
Identities = 284/362 (78%), Positives = 309/362 (84%)
Frame = +3
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQK+LHP+YSC Y+G
Sbjct: 573 SSMSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGC 752
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H
Sbjct: 753 CVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQH 932
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+P P+ EEWELI VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS
Sbjct: 933 RPSPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFS 1112
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 1113EFTKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 1292
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
+GEMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV+
Sbjct: 1293SGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVD 1472
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
+IEK Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL
Sbjct: 1473KIEKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTEL 1652
Query: 465 FP 466
P
Sbjct: 1653SP 1658
>gb|M17869.1|ACBERBATD Avian erythroblastosis virus strain ES4, mutant td 359 polyprotein
gene, partial cds
Length = 1670
Score = 581 bits (1498), Expect = e-164
Identities = 284/362 (78%), Positives = 309/362 (84%)
Frame = +3
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQK+LHP+YSC Y+G
Sbjct: 573 SSMSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGC 752
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H
Sbjct: 753 CVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQH 932
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+P + EEWELI VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS
Sbjct: 933 RPSRSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFS 1112
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 1113EFTKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 1292
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
+GEMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV+
Sbjct: 1293SGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVD 1472
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
+IEK Q+S+LLAFEHYINYRKH++ HFWPKLLMKV DLRMIGA HASRFLHMKVECPTEL
Sbjct: 1473KIEKCQESYLLAFEHYINYRKHNIPHFWPKLLMKVADLRMIGAYHASRFLHMKVECPTEL 1652
Query: 465 FP 466
P
Sbjct: 1653SP 1658
>gb|K02006.1|ACBERBA Avian erythroblastosis virus polyprotein gag-p75-erbA and erbB
protein genes, partial cds
Length = 2012
Score = 581 bits (1497), Expect = e-164
Identities = 284/362 (78%), Positives = 309/362 (84%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPS LDKDE CVVCGDKATGYHYRCITCEGCK FFRRTIQK+LHP+YSC Y+G
Sbjct: 232 SSMSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGC 411
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H
Sbjct: 412 CVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQH 591
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+P P+ EEWELI VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAFS
Sbjct: 592 RPSPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFS 771
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 772 EFTKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 951
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
+GEMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV+
Sbjct: 952 SGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVD 1131
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
+IEK Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL
Sbjct: 1132KIEKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTEL 1311
Query: 465 FP 466
P
Sbjct: 1312PP 1317
>emb|X52211.1|AEVVER Avian erythroblastosis virus v-erb-A and v-erb-B oncogenes
Length = 3110
Score = 578 bits (1491), Expect = e-163
Identities = 282/362 (77%), Positives = 308/362 (84%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPS LDKDE CVVCGDK TGYHYRCITCEGCK FFRRTIQK+LHP+YSC Y+G
Sbjct: 124 SSMSGYIPSCLDKDEQCVVCGDKPTGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGC 303
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ H
Sbjct: 304 CVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQH 483
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+P P+ EEWELI VTEAH +TNAQGSHWKQ+RKFL EDIGQ+P+ + +G KVDLEAF+
Sbjct: 484 RPSPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFT 663
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAK LPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL
Sbjct: 664 EFTKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 843
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
+GEMAV R QLKNGGLGVVSDAIFDLG SLS+FNLDDTEVALLQAVLLMSSDR GL CV+
Sbjct: 844 SGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVD 1023
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
+IEK Q+S+LLAFEHYINYRKH++ HFW KLLMKV DLRMIGA HASRFLHMKVECPTEL
Sbjct: 1024KIEKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTEL 1203
Query: 465 FP 466
P
Sbjct: 1204SP 1209
>emb|X07752.1|MMCERBA3 Mouse c-erbA alpha3 mRNA for thyroid hormone receptor
Length = 1240
Score = 546 bits (1406), Expect = e-153
Identities = 261/346 (75%), Positives = 295/346 (84%)
Frame = +1
Query: 100 QSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSC 159
Q P S GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSC
Sbjct: 94 QCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSC 273
Query: 160 KYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQ 219
KY+ C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A +
Sbjct: 274 KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMI 453
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+S+ +PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVD
Sbjct: 454 RSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVD 633
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
LEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 634 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPES 813
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
+TLTL+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR G
Sbjct: 814 DTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 993
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 445
L CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMK +R +
Sbjct: 994 LLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKGPQVRQL 1131
>emb|X07409.1|RNTRAVI Rat c-erb-A alpha mRNA for T3 receptor alpha
Length = 1910
Score = 545 bits (1403), Expect = e-153
Identities = 260/344 (75%), Positives = 295/344 (85%)
Frame = +3
Query: 100 QSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSC 159
Q P S GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSC
Sbjct: 57 QCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSC 236
Query: 160 KYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQ 219
KY+ C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A +
Sbjct: 237 KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMI 416
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+S+ +PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVD
Sbjct: 417 RSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVD 596
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
LEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 597 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPES 776
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
+TLTL+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR G
Sbjct: 777 DTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 956
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
L CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 957 LLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1088
Score = 36.6 bits (83), Expect = 5.3
Identities = 22/75 (29%), Positives = 39/75 (51%)
Frame = -1
Query: 385 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 444
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1367 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 1191
Query: 445 IGACHASRFLHMKVE 459
+ H+ + L +V+
Sbjct: 1190 LNNMHSEKLLSFRVD 1146
>emb|X07751.1|MMCERBA2 Mouse c-erbA alpha2 mRNA for thyroid hormone receptor
Length = 1357
Score = 545 bits (1403), Expect = e-153
Identities = 260/344 (75%), Positives = 295/344 (85%)
Frame = +1
Query: 100 QSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSC 159
Q P S GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSC
Sbjct: 94 QCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSC 273
Query: 160 KYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQ 219
KY+ C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A +
Sbjct: 274 KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMI 453
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+S+ +PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVD
Sbjct: 454 RSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVD 633
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
LEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 634 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPES 813
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
+TLTL+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR G
Sbjct: 814 DTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 993
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
L CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 994 LLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1125
>ref|NM_031134.1| Rattus norvegicus thyroid hormone receptor alpha (Thra1), mRNA
Length = 2460
Score = 541 bits (1394), Expect = e-152
Identities = 259/344 (75%), Positives = 294/344 (85%)
Frame = +1
Query: 100 QSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSC 159
Q P S GYIPSYLDKDE CVVCGDKATGYHYRCITCE CKGFFRRTIQK+LHP+YSC
Sbjct: 610 QCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCECCKGFFRRTIQKNLHPTYSC 789
Query: 160 KYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQ 219
KY+ C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A +
Sbjct: 790 KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMI 969
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+S+ +PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVD
Sbjct: 970 RSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVD 1149
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
LEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 1150LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPES 1329
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
+TLTL+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR G
Sbjct: 1330DTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 1509
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
L CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1510LLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1641
Score = 36.6 bits (83), Expect = 5.3
Identities = 22/75 (29%), Positives = 39/75 (51%)
Frame = -1
Query: 385 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 444
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1920 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 1744
Query: 445 IGACHASRFLHMKVE 459
+ H+ + L +V+
Sbjct: 1743 LNNMHSEKLLSFRVD 1699
>gb|M31174.1|RATERBAA Rat c-erbA-alpha-2-related protein mRNA, complete cds
Length = 2460
Score = 541 bits (1394), Expect = e-152
Identities = 259/344 (75%), Positives = 294/344 (85%)
Frame = +1
Query: 100 QSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSC 159
Q P S GYIPSYLDKDE CVVCGDKATGYHYRCITCE CKGFFRRTIQK+LHP+YSC
Sbjct: 610 QCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCECCKGFFRRTIQKNLHPTYSC 789
Query: 160 KYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQ 219
KY+ C+IDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A +
Sbjct: 790 KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMI 969
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+S+ +PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVD
Sbjct: 970 RSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVD 1149
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDS 339
LEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S
Sbjct: 1150LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPES 1329
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 399
+TLTL+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR G
Sbjct: 1330DTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 1509
Query: 400 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
L CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1510LLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1641
Score = 36.6 bits (83), Expect = 5.3
Identities = 22/75 (29%), Positives = 39/75 (51%)
Frame = -1
Query: 385 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 444
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1920 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 1744
Query: 445 IGACHASRFLHMKVE 459
+ H+ + L +V+
Sbjct: 1743 LNNMHSEKLLSFRVD 1699
>emb|AJ005798.1|SSAJ5798 Sus scrofa mRNA for thyroid hormone receptor alpha 2 (c-erbA-alpha
2)
Length = 2034
Score = 541 bits (1393), Expect = e-152
Identities = 257/335 (76%), Positives = 292/335 (86%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 257 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 436
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 437 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 616
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 617 TPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 796
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 797 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 976
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 977 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1156
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1157SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1261
Score = 36.6 bits (83), Expect = 5.3
Identities = 22/75 (29%), Positives = 39/75 (51%)
Frame = -3
Query: 385 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 444
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1540 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 1364
Query: 445 IGACHASRFLHMKVE 459
+ H+ + L +V+
Sbjct: 1363 LNNMHSEKLLSFRVD 1319
>gb|M24899.1|HUMEAR7A Human triiodothyronine (ear7) mRNA, complete cds
Length = 2309
Score = 540 bits (1392), Expect = e-152
Identities = 257/335 (76%), Positives = 292/335 (86%)
Frame = +1
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 532 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 711
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 712 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 891
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 892 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1071
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 1072IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1251
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1252AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1431
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1432SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1536
>gb|J03239.1|HUMTHRA2A Human c-erbA-alpha-2 gene encoding thyroid hormone receptor type
alpha-2 mRNA, complete cds, clone hTR-alpha-2
Length = 2015
Score = 540 bits (1392), Expect = e-152
Identities = 257/335 (76%), Positives = 292/335 (86%)
Frame = +1
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 178 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 357
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 358 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 537
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 538 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 717
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 718 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 897
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 898 AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1077
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1078SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1182
>gb|BC000261.1|BC000261 Homo sapiens, thyroid hormone receptor, alpha (avian erythroblastic
leukemia viral (v-erb-a) oncogene homolog), clone
MGC:2353 IMAGE:3501886, mRNA, complete cds
Length = 2415
Score = 540 bits (1392), Expect = e-152
Identities = 257/335 (76%), Positives = 292/335 (86%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 545 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 724
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 725 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 904
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 905 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1084
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 1085IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1264
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1265AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1444
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1445SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1549
>ref|XM_083987.1| Homo sapiens thyroid hormone receptor, alpha (erythroblastic
leukemia viral (v-erb-a) oncogene homolog, avian)
(THRA), mRNA
Length = 2115
Score = 540 bits (1392), Expect = e-152
Identities = 257/335 (76%), Positives = 292/335 (86%)
Frame = +3
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 456 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 635
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 636 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 815
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 816 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 995
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 996 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1175
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1176AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1355
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1356SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1460
>ref|XM_008585.3| Homo sapiens thyroid hormone receptor, alpha (avian erythroblastic
leukemia viral (v-erb-a) oncogene homolog) (THRA), mRNA
Length = 2115
Score = 540 bits (1392), Expect = e-152
Identities = 257/335 (76%), Positives = 292/335 (86%)
Frame = +3
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 456 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 635
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 636 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 815
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 816 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 995
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 996 IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1175
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1176AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1355
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1356SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1460
>gb|BC002728.1|BC002728 Homo sapiens, thyroid hormone receptor, alpha (avian erythroblastic
leukemia viral (v-erb-a) oncogene homolog), clone
MGC:3645 IMAGE:3628335, mRNA, complete cds
Length = 2422
Score = 540 bits (1392), Expect = e-152
Identities = 257/335 (76%), Positives = 292/335 (86%)
Frame = +2
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIID 168
GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+ C+ID
Sbjct: 554 GYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVID 733
Query: 169 KVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP 228
K+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + +S+ +PEP
Sbjct: 734 KITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEP 913
Query: 229 TDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTK 288
T EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTK
Sbjct: 914 TPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTK 1093
Query: 289 IITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM 348
IITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEM
Sbjct: 1094IITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEM 1273
Query: 349 AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEK 408
AV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK
Sbjct: 1274AVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEK 1453
Query: 409 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1454SQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1558
>ref|NM_003250.1| Homo sapiens thyroid hormone receptor, alpha (erythroblastic
leukemia viral (v-erb-a) oncogene homolog, avian)
(THRA), mRNA
Length = 2112
Score = 539 bits (1389), Expect = e-151
Identities = 257/339 (75%), Positives = 292/339 (85%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+
Sbjct: 442 SSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSC 621
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDK+TRNQCQ CRFKKCI V MA DLVLDDSKR+A + +S+
Sbjct: 622 CVIDKITRNQCQLCRFKKCIAVAMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQ 801
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS
Sbjct: 802 RPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFS 981
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL
Sbjct: 982 EFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTL 1161
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV+
Sbjct: 1162SGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVD 1341
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
+IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1342KIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1458
>emb|Y00479.1|HSERBT1 H.sapiens mRNA for thyroid hormone receptor
Length = 2112
Score = 539 bits (1389), Expect = e-151
Identities = 257/339 (75%), Positives = 292/339 (85%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHP+YSCKY+
Sbjct: 442 SSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSC 621
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDK+TRNQCQ CRFKKCI V MA DLVLDDSKR+A + +S+
Sbjct: 622 CVIDKITRNQCQLCRFKKCIAVAMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQ 801
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 284
+PEPT EEW+LI TEAH +TNAQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS
Sbjct: 802 RPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFS 981
Query: 285 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL
Sbjct: 982 EFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTL 1161
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
+GEMAV R QLKNGGLGVVSDAIF+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV+
Sbjct: 1162SGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVD 1341
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
+IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMK +++
Sbjct: 1342KIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQ 1458
>gb|AF302254.1|AF302254 Scophthalmus maximus thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 987
Score = 531 bits (1369), Expect = e-149
Identities = 262/329 (79%), Positives = 286/329 (86%), Gaps = 9/329 (2%)
Frame = +1
Query: 140 GCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 199
GCKGFFRRTIQK+L+P+Y+CKYEGKC+IDKVTRNQC+ECRFKKCI VGMATDLVLDDSKR
Sbjct: 1 GCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCRECRFKKCIVVGMATDLVLDDSKR 180
Query: 200 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKF 259
LA LQK++ + EPT EEW+LI+ VTEAH+ATNAQG+HWKQKRKF
Sbjct: 181 LAKRKLIEENRERRRKEELQKTVWDRLEPTQEEWDLIRMVTEAHMATNAQGNHWKQKRKF 360
Query: 260 LP---------EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 310
L EDIGQA + N PEG KVD+EAFS FTKIITPAITRVVDFAKKLPMFCEL
Sbjct: 361 LSAAGVKEDKAEDIGQASMANTPEGNKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCEL 540
Query: 311 PCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDL 370
PCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEMAVTR QLKNGGLGVVSDAIFDL
Sbjct: 541 PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRDQLKNGGLGVVSDAIFDL 720
Query: 371 GMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 430
G+SLS+FNLDD+EVALLQAV+L+SSDRPGL+ VERIE+ Q+ FLLAFEHYINYRKH V H
Sbjct: 721 GVSLSAFNLDDSEVALLQAVILLSSDRPGLSSVERIERCQEEFLLAFEHYINYRKHKVAH 900
Query: 431 FWPKLLMKVTDLRMIGACHASRFLHMKVE 459
FWPKLLMKVTDLRMIGACHASRFLHMKVE
Sbjct: 901 FWPKLLMKVTDLRMIGACHASRFLHMKVE 987
>gb|AF302243.1|AF302243 Takifugu rubripes thyroid hormone receptor alpha (TR-alpha) mRNA,
partial cds
Length = 963
Score = 500 bits (1288), Expect = e-139
Identities = 245/321 (76%), Positives = 272/321 (84%)
Frame = +1
Query: 137 TCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD 196
TCEGCKGFFRRTIQK+LHP+YSCKYEG CIIDK+TRNQCQ CRFKKC VGMA DLVLDD
Sbjct: 1 TCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCTSVGMAMDLVLDD 180
Query: 197 SKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQK 256
SKR+A + + + +PEP EWELI+ VTEAH TNA+GS WKQK
Sbjct: 181 SKRVAKRRLIEENRQKRKKEEMVRMLQARPEPDTAEWELIRMVTEAHRHTNAEGSTWKQK 360
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
RKFL +DIGQ P+V + +G KVDLEAFS FTKI+TPAITRVVDFAKKLPMF ELPCEDQI
Sbjct: 361 RKFLSDDIGQGPVVPSSDGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQI 540
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
ILLKGCCMEIMSLRAAVRYDP+SETLTL+G++AV R QLKNGGLGVVSDAIFDLG SL+
Sbjct: 541 ILLKGCCMEIMSLRAAVRYDPESETLTLSGKIAVKREQLKNGGLGVVSDAIFDLGKSLAQ 720
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
FNLDDTEVAL+QAVLLMSSDR GL VE+IE+ Q+++LLAFEHYINYRKH + HFWPKLL
Sbjct: 721 FNLDDTEVALMQAVLLMSSDRSGLTSVEKIEQCQEAYLLAFEHYINYRKHQIPHFWPKLL 900
Query: 437 MKVTDLRMIGACHASRFLHMK 457
MKVTDLRMIGACHASRFLHMK
Sbjct: 901 MKVTDLRMIGACHASRFLHMK 963
>gb|AF302253.1|AF302253 Scophthalmus maximus thyroid hormone receptor alpha (TR-alpha)
mRNA, partial cds
Length = 920
Score = 475 bits (1222), Expect = e-132
Identities = 235/306 (76%), Positives = 259/306 (83%)
Frame = +1
Query: 140 GCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 199
GCKGFFRRTIQK+LHP+YSCKYEG CIIDK+TRNQCQ CRFKKCI VGMA DLVL DSKR
Sbjct: 1 GCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLGDSKR 180
Query: 200 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKF 259
+A + +++ +PEP EEW+LIK VTEAH TNAQGS WKQKRKF
Sbjct: 181 VAKRRLIEENREKRKREEMVRTLQIRPEPNTEEWDLIKLVTEAHRHTNAQGSSWKQKRKF 360
Query: 260 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 319
L +DIGQ P+V +G KVDLEAFS FTKI+TPAITRVVDFAKKLPMF ELPCEDQIILL
Sbjct: 361 LSDDIGQGPMVPTSDGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILL 540
Query: 320 KGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNL 379
KGCCMEIMSLRAAVRYDP+SETLTLNGEMAV R QLKNGGLGVVSDAIFDLG SL+ FNL
Sbjct: 541 KGCCMEIMSLRAAVRYDPESETLTLNGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNL 720
Query: 380 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 439
DDTEVAL+QAVLLMSSDR GL VE+IE+ Q+++LLAFEHYINYRKH++ HFWPKLLMKV
Sbjct: 721 DDTEVALMQAVLLMSSDRSGLTSVEKIEQCQEAYLLAFEHYINYRKHNIPHFWPKLLMKV 900
Query: 440 TDLRMI 445
TDLRMI
Sbjct: 901 TDLRMI 918
>gb|AF302241.1|AF302241 Anguilla anguilla thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 890
Score = 469 bits (1207), Expect = e-130
Identities = 238/296 (80%), Positives = 252/296 (84%), Gaps = 10/296 (3%)
Frame = +1
Query: 156 SYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXX 215
SY+CKYEGKC IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA
Sbjct: 1 SYACKYEGKCAIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRRLIEENRQRRQR 180
Query: 216 XX-LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFL---------PEDIG 265
LQ++ KPEPT +EWELI+ VTEAHVATNAQG+HWKQKRKFL EDIG
Sbjct: 181 REELQRTAWRKPEPTPDEWELIRAVTEAHVATNAQGNHWKQKRKFLRAVEVKESKAEDIG 360
Query: 266 QAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME 325
QAP VNAP+G KVDLEAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME
Sbjct: 361 QAPFVNAPDGNKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME 540
Query: 326 IMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVA 385
IMSLRAAVRYDP+SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLS FNLDD+EVA
Sbjct: 541 IMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSCFNLDDSEVA 720
Query: 386 LLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTD 441
LLQAV+LMSSDRPGL VERIE+ Q+ FLLAFEHYINYRKH V +FWPKLLMKVTD
Sbjct: 721 LLQAVILMSSDRPGLTSVERIEQCQEDFLLAFEHYINYRKHKVPYFWPKLLMKVTD 888
>gb|AF302247.1|AF302247 Oreochromis niloticus thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 887
Score = 468 bits (1203), Expect = e-130
Identities = 234/295 (79%), Positives = 251/295 (84%), Gaps = 9/295 (3%)
Frame = +1
Query: 156 SYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXX 215
+Y+CKYEGKC+IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA
Sbjct: 1 TYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRR 180
Query: 216 XXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFL---------PEDIGQ 266
LQK+ + EPT EW+LI+ VTEAH+ATNAQG+HWKQKRKFL PEDIGQ
Sbjct: 181 EELQKTAWDRLEPTQXEWDLIRMVTEAHMATNAQGNHWKQKRKFLSAAGVKEAKPEDIGQ 360
Query: 267 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 326
A NAPEG KVD+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI
Sbjct: 361 ASTGNAPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 540
Query: 327 MSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 386
MSLRAAVRYDP+SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVAL
Sbjct: 541 MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVAL 720
Query: 387 LQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTD 441
LQAV+L+SSDRPGL VERIE+ Q+ FLLAFEHYINYRKH V HFWPKLLMKVTD
Sbjct: 721 LQAVILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKHKVAHFWPKLLMKVTD 885
>gb|AF302244.1|AF302244 Takifugu rubripes thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 895
Score = 466 bits (1199), Expect = e-129
Identities = 230/298 (77%), Positives = 255/298 (85%), Gaps = 9/298 (3%)
Frame = +1
Query: 147 RTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 206
RTIQK+L+P+Y+CKYEGKC+IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA
Sbjct: 1 RTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLI 180
Query: 207 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFL------ 260
LQ+++ + EPT EEW+LI+ VTEAH+ATNAQG+HWKQKRKFL
Sbjct: 181 EENRERRRREELQRTVWDRIEPTQEEWDLIRMVTEAHMATNAQGNHWKQKRKFLSAEGLK 360
Query: 261 ---PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQII 317
PED GQA +VN P G KVDLEAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQII
Sbjct: 361 ETKPEDNGQASMVNTPNGNKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQII 540
Query: 318 LLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSF 377
LLKGCCMEIMSLRAAVRYDP+SETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLS+F
Sbjct: 541 LLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSAF 720
Query: 378 NLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 435
NLDD+EVALLQA++L+SSDR GL+ VE+IE+YQ+ FLLAFEHYINYRKH V HFWP L
Sbjct: 721 NLDDSEVALLQAIILLSSDRSGLSNVEQIERYQEEFLLAFEHYINYRKHKVPHFWPNL 894
>gb|AF302242.1|AF302242 Danio rerio thyroid hormone receptor beta (TR-beta) mRNA, partial
cds
Length = 834
Score = 449 bits (1155), Expect = e-124
Identities = 223/277 (80%), Positives = 240/277 (86%), Gaps = 9/277 (3%)
Frame = +1
Query: 159 CKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXL 218
CKYEGKC+IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA L
Sbjct: 1 CKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREEL 180
Query: 219 QKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFL---------PEDIGQAPI 269
QK++ +PEPT EEWE+I+ VTEAH+ATNAQG+HWKQKRKFL PEDIG API
Sbjct: 181 QKTVWDRPEPTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLSAVGVKEAKPEDIGSAPI 360
Query: 270 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 329
VNAPEG KVD+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL
Sbjct: 361 VNAPEGNKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 540
Query: 330 RAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQA 389
RAAVRYDP+S+TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQA
Sbjct: 541 RAAVRYDPESDTLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQA 720
Query: 390 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKH 426
V+L+SSDRPGL VERIE+ Q+ FLLAFEHYINYRKH
Sbjct: 721 VILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKH 831
>gb|AF302248.1|AF302248 Oreochromis niloticus thyroid hormone receptor alpha large isoform
(TR-alpha1) mRNA, partial cds
Length = 869
Score = 442 bits (1137), Expect = e-122
Identities = 218/289 (75%), Positives = 240/289 (82%)
Frame = +1
Query: 147 RTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 206
RTIQK+LHP+YSCKY+G CIIDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 207 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQ 266
+ KS+ +PEPT EWELI+ VTEAH TNAQGS WKQKRKFLPE IGQ
Sbjct: 181 EENRERRKKEEMVKSLQSRPEPTGAEWELIRLVTEAHRHTNAQGSQWKQKRKFLPEKIGQ 360
Query: 267 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 326
+P+ +G KVDLEAFS FTKIITPAIT DFAKKLPMF ELPCEDQIILLKGCCMEI
Sbjct: 361 SPVAPTSDGDKVDLEAFSEFTKIITPAITVFFDFAKKLPMFSELPCEDQIILLKGCCMEI 540
Query: 327 MSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 386
MSLRAA+RYDPDSETLTL+GEMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVAL
Sbjct: 541 MSLRAAMRYDPDSETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVAL 720
Query: 387 LQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 435
LQAVLLMSSDR GL C ++IEK Q+++LLAFEHYINYRKH++ HFWPKL
Sbjct: 721 LQAVLLMSSDRSGLTCTDKIEKCQETYLLAFEHYINYRKHNIPHFWPKL 867
>gb|AF322218.1|AF322218 Danio rerio thyroid hormone receptor beta 2-like mRNA, complete
sequence
Length = 1234
Score = 404 bits (1039), Expect = e-111
Identities = 203/242 (83%), Positives = 216/242 (88%)
Frame = +2
Query: 234 ELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPA 293
+L +T + + NA W Q PEDIG APIVNAPEG KVD+EAFS FTKIITPA
Sbjct: 518 KLPETSAKNVASRNASLLAWLQT----PEDIGSAPIVNAPEGNKVDIEAFSQFTKIITPA 685
Query: 294 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRG 353
ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTLNGEMAVTRG
Sbjct: 686 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLNGEMAVTRG 865
Query: 354 QLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSF 413
QLKNGGLGVVSDAIFDLG+SLSSFNLDD+EVALLQAV+L+SSDRPGL VERIE+ Q+ F
Sbjct: 866 QLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSDRPGLTSVERIERCQEEF 1045
Query: 414 LLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 473
LLAFEHYINYRKH V HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF
Sbjct: 1046LLAFEHYINYRKHKVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 1225
Query: 474 ED 475
ED
Sbjct: 1226ED 1231
Score = 221 bits (564), Expect = 9e-56
Identities = 109/195 (55%), Positives = 136/195 (68%), Gaps = 4/195 (2%)
Frame = +1
Query: 1 MNYCMPEVHEVCPAASSNCYMQVT-DYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQ 59
MNYCM +++++ S + +Y Y + P + + Q + MEQAW +Q
Sbjct: 1 MNYCMSDMYDIAHGVSGGYAVPPGGEYCMYSGEGPGFTHCEPQPLHHHPPSMEQAWQHSQ 180
Query: 60 PYTCSYPGN--LFKSKDSDLDMALSQSSQPAHLPEEKP-FPQVQSPPHSQKKGYIPSYLD 116
PY C + G +FKS+ +++ LS Q + + +P F Q+Q KKGYIPSYLD
Sbjct: 181 PYGCPFSGANPVFKSELCTMEVPLSHYHQQDYYSDGRPDFSQMQWMQGPHKKGYIPSYLD 360
Query: 117 KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQ 176
KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+L+P+Y+CKYEGKC+IDKVTRNQCQ
Sbjct: 361 KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQ 540
Query: 177 ECRFKKCIYVGMATD 191
ECRFKKCI VGMATD
Sbjct: 541 ECRFKKCIAVGMATD 585
>gb|AF302240.1|AF302240 Anguilla anguilla thyroid hormone receptor alpha (TR-alpha) mRNA,
partial cds
Length = 809
Score = 399 bits (1024), Expect = e-109
Identities = 201/269 (74%), Positives = 222/269 (81%)
Frame = +1
Query: 147 RTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 206
RTIQK+LHPSYSCKY+G CIIDK+TRNQCQ CRFKKCI VGMA DLVLDD+KR+A
Sbjct: 1 RTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDNKRVAKRRLI 180
Query: 207 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQ 266
+ K++ ++PEP EWELI+ VTEAH TNAQ SHWKQKRKFLPEDIGQ
Sbjct: 181 EENRERRKKEEMVKTLQNRPEPCSSEWELIRLVTEAHRHTNAQCSHWKQKRKFLPEDIGQ 360
Query: 267 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 326
P+ +G KVDLEAF FTKIITPAIT VVDFAKKLPMF ELPCEDQIILLKGCCMEI
Sbjct: 361 FPVAPNSDGDKVDLEAFREFTKIITPAITGVVDFAKKLPMFSELPCEDQIILLKGCCMEI 540
Query: 327 MSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 386
MSLRAAVRYDP+SETLTL+GEMAV R QLKNGGL VVSDAIFDLG SL+ FNLDD+EVAL
Sbjct: 541 MSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLRVVSDAIFDLGKSLAQFNLDDSEVAL 720
Query: 387 LQAVLLMSSDRPGLACVERIEKYQDSFLL 415
LQAVLLMSSDR GL CVE+IEK Q+++LL
Sbjct: 721 LQAVLLMSSDRSGLTCVEKIEKCQETYLL 807
>gb|M31177.1|RATERBAA2 Rat c-erbA-alpha-2 protein mRNA, complete cds
Length = 1587
Score = 384 bits (985), Expect = e-104
Identities = 188/256 (73%), Positives = 218/256 (84%)
Frame = +1
Query: 188 MATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATN 247
MA DLVLDDSKR+A + +S+ +PEPT EEW+LI TEAH +TN
Sbjct: 1 MAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTN 180
Query: 248 AQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMF 307
AQGSHWKQ+RKFLP+DIGQ+PIV+ P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF
Sbjct: 181 AQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMF 360
Query: 308 CELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAI 367
ELPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEMAV R QLKNGGLGVVSDAI
Sbjct: 361 SELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAI 540
Query: 368 FDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHH 427
F+LG SLS+FNLDDTEVALLQAVLLMS+DR GL CV++IEK Q+++LLAFEHY+N+RKH+
Sbjct: 541 FELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHN 720
Query: 428 VTHFWPKLLMKVTDLR 443
+ HFWPKLLMK +++
Sbjct: 721 IPHFWPKLLMKEREVQ 768
Score = 36.6 bits (83), Expect = 5.3
Identities = 22/75 (29%), Positives = 39/75 (51%)
Frame = -1
Query: 385 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 444
A L AV+ +DR G+ +E+ Q++ L A + + T + KLL+K+ DLR
Sbjct: 1047 ACLTAVVF-PTDRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 871
Query: 445 IGACHASRFLHMKVE 459
+ H+ + L +V+
Sbjct: 870 LNNMHSEKLLSFRVD 826
>gb|AF302246.1|AF302246 Oncorhynchus mykiss thyroid hormone receptor beta (TR-beta) mRNA,
partial cds
Length = 687
Score = 364 bits (935), Expect = 8e-99
Identities = 177/229 (77%), Positives = 194/229 (84%), Gaps = 9/229 (3%)
Frame = +1
Query: 138 CEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS 197
CEGCKGFFRRTIQK+L+P+Y+CKYE KCIIDKVTRNQCQECRFKKCI VGMATDLVLDDS
Sbjct: 1 CEGCKGFFRRTIQKNLNPTYACKYEAKCIIDKVTRNQCQECRFKKCITVGMATDLVLDDS 180
Query: 198 KRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKR 257
KRLA QK++ +PE + EEW+LI+ VTEAH++TNAQG+HWKQKR
Sbjct: 181 KRLAKRKLIEESRERRRKEEFQKTVWDRPELSQEEWDLIRMVTEAHMSTNAQGNHWKQKR 360
Query: 258 KFL---------PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFC 308
KFL PEDIGQAP++NAPEG KVD+EAFS FTKIITPAITRVVDFAKKLPMFC
Sbjct: 361 KFLSAVGVKETKPEDIGQAPVINAPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFC 540
Query: 309 ELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKN 357
ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEMAVTRGQLKN
Sbjct: 541 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKN 687
>gb|AF302249.1|AF302249 Oreochromis niloticus thyroid hormone receptor alpha small isoform
(TR-alpha2) mRNA, partial cds
Length = 722
Score = 352 bits (902), Expect = 6e-95
Identities = 183/289 (63%), Positives = 202/289 (69%)
Frame = +1
Query: 147 RTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 206
RTIQK+LHP+YSCKY+G CIIDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 207 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQ 266
+ KS+ +PEPT EWELI+ VTEAH TNAQGS WKQKRKFL
Sbjct: 181 EENRERRKKEEMVKSLQSRPEPTGAEWELIRLVTEAHRHTNAQGSQWKQKRKFL------ 342
Query: 267 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 326
LPCEDQIILLKGCCMEI
Sbjct: 343 -------------------------------------------LPCEDQIILLKGCCMEI 393
Query: 327 MSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVAL 386
MSLRAA+RYDPDSETLTL+GEMAV R QLKNGGLGVVSDAIFDLG SL+ FNLDDTEVAL
Sbjct: 394 MSLRAAMRYDPDSETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVAL 573
Query: 387 LQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 435
LQAVLLMSSDR GL C ++IEK Q+++LLAFEHYINYRKH++ HFWPKL
Sbjct: 574 LQAVLLMSSDRSGLTCTDKIEKCQETYLLAFEHYINYRKHNIPHFWPKL 720
>gb|AF302245.1|AF302245 Oncorhynchus mykiss thyroid hormone receptor alpha (TR-alpha) mRNA,
partial cds
Length = 683
Score = 351 bits (900), Expect = 1e-94
Identities = 173/227 (76%), Positives = 190/227 (83%)
Frame = +1
Query: 147 RTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 206
RTIQK+LHP+YSCKY+G CIIDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 207 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQ 266
+ K++ ++PEPT EWELI+ +TEAH TNAQGSHWKQKRKFLPEDIGQ
Sbjct: 181 EENREKRKKEEMVKTLQNRPEPTGSEWELIRMLTEAHRHTNAQGSHWKQKRKFLPEDIGQ 360
Query: 267 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 326
+P+ +G KVDLEAFS FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEI
Sbjct: 361 SPVAPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEI 540
Query: 327 MSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMS 373
MSLRAAVRYDP+SETLTL+GEMAV R QLKNGGLGVVSDAIFDLG S
Sbjct: 541 MSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKS 681
>gb|AF302250.1|AF302250 Salmo salar thyroid hormone receptor alpha (TR-alpha) mRNA, partial
cds
Length = 679
Score = 340 bits (871), Expect = 2e-91
Identities = 171/227 (75%), Positives = 188/227 (82%)
Frame = +1
Query: 147 RTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXX 206
RTIQK+LHP+YSCKY+G CIIDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A
Sbjct: 1 RTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLI 180
Query: 207 XXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQ 266
+ K++ ++PEPT EWELI+ +TEAH TNAQGSHWKQKRKFLPEDIGQ
Sbjct: 181 EENRVKRKEEMV-KTLQNRPEPTGSEWELIRMLTEAHRHTNAQGSHWKQKRKFLPEDIGQ 357
Query: 267 APIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI 326
+P+V +G KVDLEAFS FTKIITPAITRVVDFAKKLPMF LPCEDQIILLKGCCMEI
Sbjct: 358 SPVVPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSGLPCEDQIILLKGCCMEI 537
Query: 327 MSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMS 373
MSLRAAVRYD +SETLTL+GEMAV R QLKNG LGVVSDAIFDLG S
Sbjct: 538 MSLRAAVRYDAESETLTLSGEMAVKREQLKNGDLGVVSDAIFDLGKS 678
>gb|AY049025.1|AY049025S1 Rana pipiens thyroid hormone receptor beta mRNA, partial cds
Length = 538
Score = 317 bits (811), Expect = 2e-84
Identities = 150/179 (83%), Positives = 155/179 (85%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
S GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LHPSYSCKYEGK
Sbjct: 1 SSMSGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGK 180
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
C+IDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++
Sbjct: 181 CVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKDELQKTLVQ 360
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF 283
KPEPT EEWELI+ VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF
Sbjct: 361 KPEPTPEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAF 537
>gb|AF146777.1|AF146777 Salmo salar thyroid hormone receptor beta (TR-beta) mRNA, partial
cds
Length = 837
Score = 313 bits (803), Expect = 2e-83
Identities = 148/202 (73%), Positives = 166/202 (81%), Gaps = 9/202 (4%)
Frame = +1
Query: 105 SQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGK 164
+ + GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+L+P+Y+CKYE K
Sbjct: 232 AMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAK 411
Query: 165 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGH 224
CIIDKVTRNQCQECRFKKCI VGMATDLVLDDSKRLA LQK++
Sbjct: 412 CIIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWD 591
Query: 225 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFL---------PEDIGQAPIVNAPEG 275
+PEP+ EEW+LI+ TEAH++TNAQG+HWKQKRKFL PEDIGQAP++NAPEG
Sbjct: 592 RPEPSQEEWDLIRMATEAHMSTNAQGNHWKQKRKFLSAVGVKETKPEDIGQAPVINAPEG 771
Query: 276 GKVDLEAFSHFTKIITPAITRV 297
KVD+EAFS FTKIITPAITRV
Sbjct: 772 SKVDIEAFSQFTKIITPAITRV 837
>dbj|AB057767.1|AB057767 Ciona savignyi Cs-NR1 mRNA for nuclear receptor 1, complete cds
Length = 2128
Score = 283 bits (724), Expect = 2e-74
Identities = 151/359 (42%), Positives = 209/359 (58%), Gaps = 2/359 (0%)
Frame = +2
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
KGY+PSYLD +E+CVVCGDKATGYHYRCITCEGCKGFFRRT+QK LH +Y CK + KC I
Sbjct: 146 KGYVPSYLDGNEVCVVCGDKATGYHYRCITCEGCKGFFRRTVQKGLHQAYQCKQDEKCQI 325
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPE 227
+KV+RNQCQ CR+KKCI GMATDLVL++ KRLA K +GH
Sbjct: 326 NKVSRNQCQLCRYKKCITTGMATDLVLNEDKRLAKRRLIERNRQLRR----HKDLGH--- 484
Query: 228 PTDEEWELIK-TVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHF 286
E W+ K + E HV + +H+ D+G + HF
Sbjct: 485 -VIETWKSNKLSEEEKHVINSVVQAHY---------DLGSYCDITGVSTSTASHN--EHF 628
Query: 287 TKIITPAITRVVDFAKKLPMFC-ELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLN 345
+ +T A+TRVV+FAK LP F ++ +DQ+ +LKGCCME++ L A YD TL L
Sbjct: 629 SSALTNAVTRVVEFAKCLPFFSDQVSTDDQVTMLKGCCMEVIVLNAVTDYDRQRGTLKLF 808
Query: 346 GEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVER 405
+ V+R QL+ +D +F ++ L TE+++++A+++ + DRPG+ R
Sbjct: 809 SSVVVSRNQLRRTRFDNFADDLFRTAEEMAILQLTQTEISMMKAIIVFAPDRPGVQQTGR 988
Query: 406 IEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
I+ Q+ L A HY+N ++ H W LL+K+ D+R I A+ +HMK+ P EL
Sbjct: 989 IKNIQNFLLQALNHYLNDKRKHEYTVWSMLLLKLADVRRISTGFAASLMHMKLNNPEEL 1165
>emb|Y16623.1|NMY16623 Necturus maculosus mRNA for thyroid hormone receptor receptor
alpha, partial
Length = 557
Score = 278 bits (711), Expect = 8e-73
Identities = 137/184 (74%), Positives = 151/184 (81%)
Frame = +1
Query: 166 IIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHK 225
IIDK+TRNQCQ CRFKKCI VGMA DLVLDDSKR+A + KS+ ++
Sbjct: 4 IIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMLKSMQNR 183
Query: 226 PEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSH 285
PEPT EEWELI+ VT+AH +TNAQGSHWKQKRKFLP+ IGQ P+ PE +VDLEAFS
Sbjct: 184 PEPTSEEWELIRLVTDAHCSTNAQGSHWKQKRKFLPDAIGQCPMTAVPENDRVDLEAFSE 363
Query: 286 FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLN 345
FTKIITPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+
Sbjct: 364 FTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLS 543
Query: 346 GEMA 349
GEMA
Sbjct: 544 GEMA 555
>gb|AF077403.1|AF077403 Ciona intestinalis nuclear receptor 1 (NR1) mRNA, complete cds
Length = 2086
Score = 263 bits (671), Expect = 3e-68
Identities = 141/360 (39%), Positives = 204/360 (56%), Gaps = 3/360 (0%)
Frame = +2
Query: 108 KGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCII 167
KGYIPSYLD +E CVVCGDKATGYHYRCITCEGCKGFFRRT+QK L +Y CK GKC +
Sbjct: 188 KGYIPSYLDGNEECVVCGDKATGYHYRCITCEGCKGFFRRTVQKDLQKTYQCKQRGKCQV 367
Query: 168 DKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIG--HK 225
+KV+RNQCQ CR++KCI GMATDLVL++ KR+A + +G
Sbjct: 368 NKVSRNQCQMCRYEKCIATGMATDLVLNEDKRIAKRKLIERNRQLRRHKDISHVMGTWKV 547
Query: 226 PEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSH 285
+D++ +I V +AH + R +P G+
Sbjct: 548 GRGSDDDNHVISAVVQAHNDVINDDDFEETSR--------------SPTHGE-------Q 664
Query: 286 FTKIITPAITRVVDFAKKLPMFC-ELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTL 344
F+ +T A+TRVV+FAK+LP F + +DQ+ +LKGCCME++ L YD TL L
Sbjct: 665 FSSALTNAVTRVVEFAKRLPFFTGKASTDDQVAMLKGCCMEVIVLNCVASYDRARCTLKL 844
Query: 345 NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVE 404
++ +TR +L+ +D +F +S L +TE+A+L+A+++ ++DRP + ++
Sbjct: 845 FSKVIITREKLRRTRFDHFADDLFRTAEEMSILQLTETEIAMLKAIIVFAADRPRIQHID 1024
Query: 405 RIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 464
I Q+S L + +Y+ + H W LL+K+ D+R I A+ + MK+ P EL
Sbjct: 1025EIRNIQNSLLQSLRYYVMDKAQHEYAVWSMLLIKMADIRRISNGFAASLMDMKLNNPEEL 1204
>gb|S62758.1|S62758 hormone receptor beta subunit [mice, thyroid, mRNA Partial, 443 nt]
Length = 443
Score = 238 bits (608), Expect = 7e-61
Identities = 112/112 (100%), Positives = 112/112 (100%)
Frame = +3
Query: 1 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 60
MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP
Sbjct: 108 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 287
Query: 61 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIP 112
YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIP
Sbjct: 288 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIP 443
>gb|M25071.1|RATT3R Rat pituitary-specific thyroid hormone receptor (ErbA-beta-2) mRNA,
5' end
Length = 536
Score = 234 bits (596), Expect = 2e-59
Identities = 109/121 (90%), Positives = 113/121 (93%)
Frame = +3
Query: 1 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 60
MNYC+PEVHEVCPAA SN YMQVTDYLAYLEDSPA SG DVQAVP SSIY+EQAW +NQP
Sbjct: 174 MNYCVPEVHEVCPAAGSNRYMQVTDYLAYLEDSPAYSGCDVQAVPGSSIYLEQAWTLNQP 353
Query: 61 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDEL 120
YTCSYPGNLFKSKDSDLDMALSQ SQPAHLPEEKPFPQV+SPPHS KKGYIPSYLDKDEL
Sbjct: 354 YTCSYPGNLFKSKDSDLDMALSQYSQPAHLPEEKPFPQVRSPPHSHKKGYIPSYLDKDEL 533
Query: 121 C 121
C
Sbjct: 534 C 536
>gb|U15542.1|MMBTTHR1 Mus musculus beta 2 thyroid hormone receptor (TRbeta2) gene, exon 1
Length = 3335
Score = 231 bits (590), Expect = 9e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = +2
Query: 1 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 60
MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP
Sbjct: 2903 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 3082
Query: 61 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKG 109
YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKG
Sbjct: 3083 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKG 3229
>gb|S74155.1|S74155 zRAR alpha =retinoic acid receptor alpha [zebrafish, embryos, mRNA,
1773 nt]
Length = 1773
Score = 228 bits (581), Expect = 9e-58
Identities = 129/361 (35%), Positives = 196/361 (53%), Gaps = 6/361 (1%)
Frame = +3
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C E CII+KVTRN+CQ CR
Sbjct: 432 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 605
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWE 234
+KC+ VGM+ + V +D + +K KPE T+ + +
Sbjct: 606 QKCLEVGMSKESVRNDRNK-------------------KKKEEKKPECTENYTLSPDTEQ 728
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
+I V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 729 MIDRVRKAHQETFPSLC---QLGKYTTSNSSERRVA-------LDVDLWDKFSELSTKCI 878
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 879 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1058
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L
Sbjct: 1059MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLL 1238
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1239EALKIYVRNRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1415
Query: 475 D 475
+
Sbjct: 1416N 1418
>emb|X57339.1|GDRARB1 G.domesticus RAR beta mRNA for retinoic acid receptor beta, isoform
4
Length = 1714
Score = 228 bits (581), Expect = 9e-58
Identities = 153/452 (33%), Positives = 228/452 (49%), Gaps = 1/452 (0%)
Frame = +2
Query: 25 DYLAYLED-SPALSGRDVQAVPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQ 83
D+L LE+ SPA A PSS + E+A + G L +++ A S
Sbjct: 143 DWLGSLENVSPAQMLDFYTASPSSCMLQEKA------LKACFSG-LAQTEWQHRHSAQSV 301
Query: 84 SSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKG 143
+Q E P P PP + Y P C VC DK++GYHY CEGCKG
Sbjct: 302 ETQSTSSEELVPSPPSPLPP---PRVYKP--------CFVCQDKSSGYHYGVSACEGCKG 448
Query: 144 FFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXX 203
FFRR+IQK++ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 449 FFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 622
Query: 204 XXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPED 263
++ E T E +L + + +AH T Q K+
Sbjct: 623 PT-------------KQESTENYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS 754
Query: 264 IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCC 323
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C
Sbjct: 755 -------SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAAC 913
Query: 324 MEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTE 383
++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDTE
Sbjct: 914 LDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTE 1093
Query: 384 VALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLR 443
LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR
Sbjct: 1094TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 1273
Query: 444 MIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I A A R + +K+E P + PPL E+ E+
Sbjct: 1274SISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1366
>gb|AF342944.1|AF342944 Danio rerio retinoic acid receptor alpha 2 mRNA, complete cds
Length = 2539
Score = 228 bits (581), Expect = 9e-58
Identities = 130/355 (36%), Positives = 196/355 (54%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRRTIQK++ Y+C E CII+KVTRN+CQ CR
Sbjct: 434 CFVCQDKSSGYHYGVSACEGCKGFFRRTIQKNM--VYTCHREKSCIINKVTRNRCQYCRL 607
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC+ VGM+ + V +D + Q+ + + D E ++I+ V
Sbjct: 608 QKCLEVGMSKESVRNDRNKRKKDDKK------------QECLENYVLSPDTE-KMIEQVR 748
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ + +A +D++ + F+++ T I + V+F
Sbjct: 749 KAHQETFPSLC---QLGKYTTNN-------SADHRVALDVDLWDKFSELSTKCIIKTVEF 898
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY PD +T+T + + + R Q+ N G
Sbjct: 899 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGF 1078
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DD E LL A+ L+ DR L +++++ Q+ L A + Y
Sbjct: 1079GPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQSDKVDELQEPLLEALKIY 1258
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1259VRNRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1420
>gb|L03399.1|ZEFRARA2B Zebrafish retinoic acid receptor alpha 2.B (RAR-alpha-2.B) mRNA,
complete cds
Length = 2539
Score = 228 bits (581), Expect = 9e-58
Identities = 130/355 (36%), Positives = 196/355 (54%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRRTIQK++ Y+C E CII+KVTRN+CQ CR
Sbjct: 434 CFVCQDKSSGYHYGVSACEGCKGFFRRTIQKNM--VYTCHREKSCIINKVTRNRCQYCRL 607
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC+ VGM+ + V +D + Q+ + + D E ++I+ V
Sbjct: 608 QKCLEVGMSKESVRNDRNKRKKDDKK------------QECLENYVLSPDTE-KMIEQVR 748
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ + +A +D++ + F+++ T I + V+F
Sbjct: 749 KAHQETFPSLC---QLGKYTTNN-------SADHRVALDVDLWDKFSELSTKCIIKTVEF 898
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY PD +T+T + + + R Q+ N G
Sbjct: 899 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGF 1078
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DD E LL A+ L+ DR L +++++ Q+ L A + Y
Sbjct: 1079GPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQSDKVDELQEPLLEALKIY 1258
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1259VRNRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1420
>emb|AJ012378.1|FRU012378 Fugu rubripes mRNA for retinoic acid receptor alpha-1
Length = 2134
Score = 228 bits (580), Expect = 1e-57
Identities = 131/364 (35%), Positives = 196/364 (52%), Gaps = 9/364 (2%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C E CII+KVTRN+CQ CR
Sbjct: 1025 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 1198
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWE 234
+KC+ VGM+ + V +D + +K KPE + + +
Sbjct: 1199 QKCLEVGMSKESVRNDRNK-------------------KKKDEKKPECIENYVLSPDTEQ 1321
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPE--DIGQAPIVNAPEGG-KVDLEAFSHFTKIIT 291
+I V +AH T P +G+ N+ E +D++ + F+++ T
Sbjct: 1322 MINRVRKAHQET-------------FPSLCQLGKYTTTNSSERRVALDVDLWDKFSELST 1462
Query: 292 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVT 351
I + V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + +
Sbjct: 1463 KCIIKTVEFAKQLPGFVTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 1642
Query: 352 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQD 411
R Q+ N G G ++D +F L +DD E LL A+ L+ DR L E+++ Q+
Sbjct: 1643 RTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQAEKVDILQE 1822
Query: 412 SFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLE 471
L A + Y+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E
Sbjct: 1823 PLLEALKIYVRRRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQE 1999
Query: 472 VFED 475
+ E+
Sbjct: 2000 MLEN 2011
>emb|AJ012379.2|FRU012379 Fugu rubripes mRNA for retinoic acid receptor alpha-2
Length = 2577
Score = 228 bits (580), Expect = 1e-57
Identities = 131/364 (35%), Positives = 196/364 (52%), Gaps = 9/364 (2%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C E CII+KVTRN+CQ CR
Sbjct: 1468 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 1641
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWE 234
+KC+ VGM+ + V +D + +K KPE + + +
Sbjct: 1642 QKCLEVGMSKESVRNDRNK-------------------KKKDEKKPECIENYVLSPDTEQ 1764
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPE--DIGQAPIVNAPEGG-KVDLEAFSHFTKIIT 291
+I V +AH T P +G+ N+ E +D++ + F+++ T
Sbjct: 1765 MINRVRKAHQET-------------FPSLCQLGKYTTTNSSERRVALDVDLWDKFSELST 1905
Query: 292 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVT 351
I + V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + +
Sbjct: 1906 KCIIKTVEFAKQLPGFVTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 2085
Query: 352 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQD 411
R Q+ N G G ++D +F L +DD E LL A+ L+ DR L E+++ Q+
Sbjct: 2086 RTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQAEKVDILQE 2265
Query: 412 SFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLE 471
L A + Y+ R+ H H +PK+LMK+TDLR I A A R + +K+E P + PPL E
Sbjct: 2266 PLLEALKIYVRRRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQE 2442
Query: 472 VFED 475
+ E+
Sbjct: 2443 MLEN 2454
>gb|M73779.1|HUMPMLRAR Human PML-RAR protein (PML-RAR) mRNA, complete cds
Length = 3036
Score = 226 bits (577), Expect = 3e-57
Identities = 143/414 (34%), Positives = 212/414 (50%), Gaps = 8/414 (1%)
Frame = +1
Query: 70 FKSKDSDLDMALSQSS--QPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDK 127
FK + DL ++Q + E+ P SPP + Y P C VC DK
Sbjct: 1201 FKVRLQDLSSCITQGKAIETQSSSSEEIVPSPPSPPPLPRI-YKP--------CFVCQDK 1353
Query: 128 ATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVG 187
++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VG
Sbjct: 1354 SSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVG 1527
Query: 188 MATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWELIKTVTE 241
M+ + V +D + +K KPE T E ELI+ V +
Sbjct: 1528 MSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGELIEKVRK 1650
Query: 242 AHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFA 301
AH T Q K+ + + + +D++ + F+++ T I + V+FA
Sbjct: 1651 AHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEFA 1800
Query: 302 KKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLG 361
K+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G
Sbjct: 1801 KQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG 1980
Query: 362 VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI 421
++D +F L +DD E LL A+ L+ DR L +R++ Q+ L A + Y+
Sbjct: 1981 PLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYV 2160
Query: 422 NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 2161 RKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 2319
>emb|X59473.1|GGRARBETA G.gallus mRNA for retinoic acid receptor-beta, RAR-beta
Length = 1596
Score = 226 bits (577), Expect = 3e-57
Identities = 151/451 (33%), Positives = 225/451 (49%)
Frame = +3
Query: 25 DYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQS 84
D + L SPA A PSS + E+A + G L +++ A S
Sbjct: 15 DCMDVLAVSPAQMLDFYTASPSSCMLQEKA------LKACFSG-LAQTEWQHRHSAQSVE 173
Query: 85 SQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGF 144
+Q E P P PP + Y P C VC DK++GYHY CEGCKGF
Sbjct: 174 TQSTSSEELVPSPPSPLPP---PRVYKP--------CFVCQDKSSGYHYGVTACEGCKGF 320
Query: 145 FRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXX 204
FRR+IQK++ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 321 FRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEP 494
Query: 205 XXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDI 264
++ E T E +L + + +AH T Q K+
Sbjct: 495 T-------------KQESTENYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS- 623
Query: 265 GQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCM 324
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C+
Sbjct: 624 ------SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 785
Query: 325 EIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEV 384
+I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDTE
Sbjct: 786 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 965
Query: 385 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 444
LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR
Sbjct: 966 GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 1145
Query: 445 IGACHASRFLHMKVECPTELFPPLFLEVFED 475
I A A R + +K+E P + PPL E+ E+
Sbjct: 1146ISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1235
>emb|X57340.1|GDRARB Chicken RAR-beta mRNA for retinoic acid receptor beta
Length = 1695
Score = 226 bits (576), Expect = 4e-57
Identities = 151/451 (33%), Positives = 225/451 (49%)
Frame = +1
Query: 25 DYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQS 84
D + L SPA A PSS + E+A + G L +++ A S
Sbjct: 127 DCMDVLAVSPAQMLDFYTASPSSCMLQEKA------LKACFSG-LAQTEWQHRHSAQSVE 285
Query: 85 SQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGF 144
+Q E P P PP + Y P C VC DK++GYHY CEGCKGF
Sbjct: 286 TQSTSSEELVPSPPSPLPP---PRVYKP--------CFVCQDKSSGYHYGVSACEGCKGF 432
Query: 145 FRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXX 204
FRR+IQK++ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 433 FRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEP 606
Query: 205 XXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDI 264
++ E T E +L + + +AH T Q K+
Sbjct: 607 T-------------KQESTENYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS- 735
Query: 265 GQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCM 324
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C+
Sbjct: 736 ------SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 897
Query: 325 EIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEV 384
+I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDTE
Sbjct: 898 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 1077
Query: 385 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 444
LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR
Sbjct: 1078GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 1257
Query: 445 IGACHASRFLHMKVECPTELFPPLFLEVFED 475
I A A R + +K+E P + PPL E+ E+
Sbjct: 1258ISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1347
>gb|AF110730.1|AF110730 Coturnix coturnix retinoic acid receptor beta-2 (RAR-beta-2) mRNA,
complete cds
Length = 1642
Score = 226 bits (576), Expect = 4e-57
Identities = 151/451 (33%), Positives = 225/451 (49%)
Frame = +3
Query: 25 DYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQS 84
D + L SPA A PSS + E+A + G L +++ A S
Sbjct: 33 DCMDVLAVSPAQMLDFYTASPSSCMLQEKA------LKACFSG-LAQTEWQHRHSAQSVE 191
Query: 85 SQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGF 144
+Q E P P PP + Y P C VC DK++GYHY CEGCKGF
Sbjct: 192 TQSTSSEELVPSPPSPLPP---PRVYKP--------CFVCQDKSSGYHYGVSACEGCKGF 338
Query: 145 FRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXX 204
FRR+IQK++ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 339 FRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEP 512
Query: 205 XXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDI 264
++ E T E +L + + +AH T Q K+
Sbjct: 513 T-------------KQESTENYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS- 641
Query: 265 GQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCM 324
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C+
Sbjct: 642 ------SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 803
Query: 325 EIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEV 384
+I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDTE
Sbjct: 804 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 983
Query: 385 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 444
LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+TDLR
Sbjct: 984 GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 1163
Query: 445 IGACHASRFLHMKVECPTELFPPLFLEVFED 475
I A A R + +K+E P + PPL E+ E+
Sbjct: 1164ISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1253
>emb|X87365.1|XLRNARARA X.laevis mRNA for retinoic acid receptor alpha
Length = 2837
Score = 226 bits (576), Expect = 4e-57
Identities = 132/356 (37%), Positives = 192/356 (53%), Gaps = 1/356 (0%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 799 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 972
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + + +S PE D LI+ V
Sbjct: 973 QKCFEVGMSKESVRNDRNK---------KKKEPPKVDVMESYVLSPETQD----LIEKVR 1113
Query: 241 EAHVAT-NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVD 299
+AH T A K F E E +D++ + F+++ T I + V+
Sbjct: 1114 KAHKETFPALCQLGKYTTNFSSE-----------ERVSLDIDLWDKFSELSTKCIIKTVE 1260
Query: 300 FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGG 359
FAK+LP F L DQI LLK C++I+ LR RY PD +T+T + + + R Q+ N G
Sbjct: 1261 FAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAG 1440
Query: 360 LGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEH 419
G ++D +F L +DD E LL A+ L+ DR L ++++K Q+ L A +
Sbjct: 1441 FGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKI 1620
Query: 420 YINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1621 YVRNRRPKKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1785
>emb|X07282.1|HSRARE Human mRNA for retinoic acid receptor-epsilon protein
Length = 1758
Score = 226 bits (575), Expect = 5e-57
Identities = 128/355 (36%), Positives = 192/355 (54%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 584 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 757
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 758 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 898
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 899 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1048
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1049AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1228
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 1229GPLTDLVFTFANQLQPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1408
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1409IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1570
>emb|Z14254.1|NVRARA2M N.viridescens mRNA for retinoic acid receptor alpha 2
Length = 1697
Score = 226 bits (575), Expect = 5e-57
Identities = 139/400 (34%), Positives = 209/400 (51%), Gaps = 6/400 (1%)
Frame = +3
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY CEGC
Sbjct: 489 SHSIETQSTSSEEIVPSPPSPPPLPRI-YKP--------CFVCQDKSSGYHYGVSACEGC 641
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 642 KGFFRRSIQKNM--VYTCHRDKTCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKK- 812
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWELIKTVTEAHVATNAQGSHWKQ 255
+K K E T+ E +L++ V +AH T Q
Sbjct: 813 -----------------KKQEAPKQECTESYIITPEVEDLVEKVRKAHQETFPALC---Q 932
Query: 256 KRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQ 315
K+ + ++ E +D++ + F+++ T I + V+FAK+LP F L DQ
Sbjct: 933 LGKYTTNN-------SSEERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQ 1091
Query: 316 IILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLS 375
I LLK C++I+ LR RY PD +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1092ITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLL 1271
Query: 376 SFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 435
+DD E LL A+ L+ DR L ++++K Q+ L A + Y+ R+ + H +PK+
Sbjct: 1272PLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKM 1451
Query: 436 LMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1452LMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1568
>gb|AF342936.1|AF342936 Danio rerio retinoic acid receptor alpha 1 mRNA, complete cds
Length = 1967
Score = 226 bits (575), Expect = 5e-57
Identities = 128/361 (35%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C E CII+KVTRN+CQ CR
Sbjct: 343 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 516
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWE 234
+KC+ VGM+ + V +D + +K KPE T+ + +
Sbjct: 517 QKCLEVGMSKESVRNDRNK-------------------KKKEEKKPECTENYTLSPDTEQ 639
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
+I V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 640 MIDRVRKAHQETFPSLC---QLGKYTTSNSSERRVA-------LDVDLWDKFSELSTKCI 789
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 790 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 969
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L
Sbjct: 970 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLL 1149
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H H +PK+LMK+TDLR I A A + +K+E P + PPL E+ E
Sbjct: 1150EALKIYVRNRRPHKPHMFPKMLMKITDLRSISAKGAELLITLKMEIPGSM-PPLIQEMLE 1326
Query: 475 D 475
+
Sbjct: 1327N 1329
>gb|L03398.1|ZEFRARA2A Zebrafish retinoic acid receptor alpha 2.A (RAR-alpha-2.A) mRNA,
complete cds
Length = 1967
Score = 226 bits (575), Expect = 5e-57
Identities = 128/361 (35%), Positives = 195/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C E CII+KVTRN+CQ CR
Sbjct: 343 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRL 516
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWE 234
+KC+ VGM+ + V +D + +K KPE T+ + +
Sbjct: 517 QKCLEVGMSKESVRNDRNK-------------------KKKEEKKPECTENYTLSPDTEQ 639
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
+I V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 640 MIDRVRKAHQETFPSLC---QLGKYTTSNSSERRVA-------LDVDLWDKFSELSTKCI 789
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 790 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 969
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L
Sbjct: 970 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLL 1149
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H H +PK+LMK+TDLR I A A + +K+E P + PPL E+ E
Sbjct: 1150EALKIYVRNRRPHKPHMFPKMLMKITDLRSISAKGAELLITLKMEIPGSM-PPLIQEMLE 1326
Query: 475 D 475
+
Sbjct: 1327N 1329
>gb|S63196.1|S63196 retinoic acid receptor-beta [chickens, mRNA Partial, 1530 nt]
Length = 1530
Score = 225 bits (574), Expect = 6e-57
Identities = 138/396 (34%), Positives = 205/396 (50%)
Frame = +1
Query: 80 ALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCE 139
A S +Q E P P PP + Y P C VC DK++GYHY CE
Sbjct: 82 AQSVETQSTSSEELVPSPPSPLPP---PRVYKP--------CFVCQDKSSGYHYGVSACE 228
Query: 140 GCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR 199
GCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 229 GCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 402
Query: 200 LAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKF 259
++ E T E +L + + +AH T Q K+
Sbjct: 403 KKKEPT-------------KQDSTENYEMTAELDDLTEKIRKAHQETFPSLC---QLGKY 534
Query: 260 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 319
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LL
Sbjct: 535 TTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLL 693
Query: 320 KGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNL 379
K C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +
Sbjct: 694 KAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEM 873
Query: 380 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKV 439
DDTE LL A+ L+ DR L +++K Q+ L A + YI R+ + H +PK+LMK+
Sbjct: 874 DDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKI 1053
Query: 440 TDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1054TDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1158
>emb|Y00291.1|HSHAPRA Human hap mRNA encoding a DNA-binding hormone receptor
Length = 2972
Score = 225 bits (574), Expect = 6e-57
Identities = 128/355 (36%), Positives = 192/355 (54%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 562 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 735
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 736 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 876
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 877 KAHQETFPSLC---QLAKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1026
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1027AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1206
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 1207GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1386
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1387IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMMEN 1548
>emb|X17586.1|NVRARDG Newt mRNA for retinoic receptor delta (RAR-delta)
Length = 1600
Score = 225 bits (574), Expect = 6e-57
Identities = 141/417 (33%), Positives = 216/417 (50%), Gaps = 1/417 (0%)
Frame = +2
Query: 60 PYTCSYPGNLFKSKDSDLDMAL-SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKD 118
P+ + G F+S +DL + S S + E+ P SPP + Y P
Sbjct: 134 PFDLTNGGAYFRSFPTDLPKEMASLSVETQSTSSEEMVPSSPSPPPPPRV-YKP------ 292
Query: 119 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQEC 178
C VC DK++GYHY +CEGCKGFFRR+IQK++ Y+C + C I+KVTRN+CQ C
Sbjct: 293 --CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYC 460
Query: 179 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKT 238
R +KC VGM+ + V +D + ++ + E E LI+
Sbjct: 461 RLQKCFEVGMSKEAVRNDRNKKKKEIK-------------EEVVTDSYEMPPEMEALIQK 601
Query: 239 VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVV 298
V++AH T Q K+ +A ++DL + F+++ T I ++V
Sbjct: 602 VSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWHKFSELATKCIIKIV 751
Query: 299 DFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNG 358
+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N
Sbjct: 752 EFAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNA 931
Query: 359 GLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFE 418
G G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A +
Sbjct: 932 GFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALK 1111
Query: 419 HYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
Y R+ + + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1112IYARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1279
>emb|X69944.1|NVRARD1AB N.viridescens retinoic acid receptor delta 1a and 1b cDNA
Length = 2424
Score = 225 bits (574), Expect = 6e-57
Identities = 141/417 (33%), Positives = 216/417 (50%), Gaps = 1/417 (0%)
Frame = +1
Query: 60 PYTCSYPGNLFKSKDSDLDMAL-SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKD 118
P+ + G F+S +DL + S S + E+ P SPP + Y P
Sbjct: 958 PFDLTNGGAYFRSFPTDLPKEMASLSVETQSTSSEEMVPSSPSPPPPPRV-YKP------ 1116
Query: 119 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQEC 178
C VC DK++GYHY +CEGCKGFFRR+IQK++ Y+C + C I+KVTRN+CQ C
Sbjct: 1117 --CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYC 1284
Query: 179 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKT 238
R +KC VGM+ + V +D + ++ + E E LI+
Sbjct: 1285 RLQKCFEVGMSKEAVRNDRNKKKKEIK-------------EEVVTDSYEMPPEMEALIQK 1425
Query: 239 VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVV 298
V++AH T Q K+ +A ++DL + F+++ T I ++V
Sbjct: 1426 VSKAHQETFPSLC---QLGKYTTNS-------SADHRVQLDLGLWHKFSELATKCIIKIV 1575
Query: 299 DFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNG 358
+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N
Sbjct: 1576 EFAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNA 1755
Query: 359 GLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFE 418
G G ++D +F L +DDTE LL A+ L+ DR L E+++K Q+ L A +
Sbjct: 1756 GFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALK 1935
Query: 419 HYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
Y R+ + + +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1936 IYARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 2103
>emb|X17585.1|NVRARAG Newt mRNA for retinoic acid receptor alpha (RAR-alpha)
Length = 1377
Score = 225 bits (574), Expect = 6e-57
Identities = 130/361 (36%), Positives = 197/361 (54%), Gaps = 6/361 (1%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 259 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKTCIINKVTRNRCQYCRL 432
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWE 234
+KC VGM+ + V +D + +K K E T+ E +
Sbjct: 433 QKCFEVGMSKESVRNDRNKK------------------KKQEAPKQECTESYIITPEVED 558
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
L++ V +AH T Q K+ + ++ E +D++ + F+++ T I
Sbjct: 559 LVEKVRKAHQETFPALC---QLGKYTTNN-------SSEERVSLDIDLWDKFSELSTKCI 708
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY PD +T+T + + + R Q
Sbjct: 709 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQ 888
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++K Q+ L
Sbjct: 889 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLL 1068
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1069EALKIYVRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1245
Query: 475 D 475
+
Sbjct: 1246N 1248
>gb|AY046944.1| Mesocricetus auratus retinoic acid receptor beta-2 mRNA, complete cds
Length = 2742
Score = 225 bits (574), Expect = 6e-57
Identities = 128/355 (36%), Positives = 192/355 (54%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 712 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 885
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 886 QKCFEVGMSKESVRNDRNKKKKEPS-------------KQECTESYEMTAELDDLTEKIR 1026
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 1027 KAHQETFPSLC---QLAKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1176
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1177 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1356
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 1357 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1536
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1537 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1698
>emb|X56674.1|GGRTABPB Chicken mRNA for retinoic acid binding protein beta isoform
Length = 1869
Score = 225 bits (573), Expect = 8e-57
Identities = 128/355 (36%), Positives = 193/355 (54%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 557 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 730
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 731 QKCFEVGMSKESVRNDRNKKKKEPT-------------KQESTENYEMTAELDDLTEKIR 871
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 872 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1021
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1022AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1201
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 1202GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIY 1381
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1382IRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1543
>gb|AF110729.1|AF110729 Coturnix coturnix retinoic acid receptor beta-1 (RAR-beta-1) mRNA,
complete cds
Length = 2049
Score = 225 bits (573), Expect = 8e-57
Identities = 128/355 (36%), Positives = 193/355 (54%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 674 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 847
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 848 QKCFEVGMSKESVRNDRNKKKKEPT-------------KQESTENYEMTAELDDLTEKIR 988
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 989 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1138
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1139 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1318
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 1319 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIY 1498
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1499 IRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1660
>gb|AF157483.1|AF157483 Homo sapiens retinoic acid receptor beta 4 (NR1B2) mRNA, complete
cds
Length = 1462
Score = 225 bits (573), Expect = 8e-57
Identities = 128/355 (36%), Positives = 192/355 (54%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 352 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 525
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 526 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 666
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 667 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 816
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 817 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 996
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 997 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1176
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1177IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1338
>ref|NM_016152.2| Homo sapiens retinoic acid receptor, beta (RARB), transcript
variant 2, mRNA
Length = 2762
Score = 225 bits (573), Expect = 8e-57
Identities = 128/355 (36%), Positives = 192/355 (54%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 352 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 525
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 526 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 666
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 667 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 816
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 817 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 996
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 997 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1176
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1177IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1338
>ref|NM_000965.2| Homo sapiens retinoic acid receptor, beta (RARB), transcript variant
1, mRNA
Length = 3119
Score = 225 bits (573), Expect = 8e-57
Identities = 128/355 (36%), Positives = 192/355 (54%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 709 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 882
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 883 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 1023
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 1024 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1173
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1174 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1353
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 1354 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1533
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1534 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1695
>ref|XM_053323.1| Homo sapiens retinoic acid receptor, beta (RARB), mRNA
Length = 3129
Score = 225 bits (573), Expect = 8e-57
Identities = 128/355 (36%), Positives = 192/355 (54%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 710 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 883
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 884 QKCFEVGMSKESVRNDRNKKKKETS-------------KQECTESYEMTAELDDLTEKIR 1024
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 1025 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1174
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1175 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1354
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 1355 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1534
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1535 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1696
>emb|X57341.1|GDRARB2 G.domesticus RAR beta mRNA for retinoic acid receptor beta, isoform 1
Length = 2039
Score = 225 bits (573), Expect = 8e-57
Identities = 128/355 (36%), Positives = 193/355 (54%)
Frame = +3
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 705 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCVINKVTRNRCQYCRL 878
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 879 QKCFEVGMSKESVRNDRNKKKKEPT-------------KQESTENYEMTAELDDLTEKIR 1019
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 1020 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1169
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1170 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1349
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 1350 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIY 1529
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1530 IRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1691
>gb|AY046943.1| Mesocricetus auratus retinoic acid receptor alpha mRNA, complete
cds
Length = 2748
Score = 224 bits (572), Expect = 1e-56
Identities = 130/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +3
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 348 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 521
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 522 QKCFEVGMSKESVRNDRNK-------------------KKKEAAKPECSESYTLTPEVGE 644
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 645 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 794
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 795 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 974
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L
Sbjct: 975 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1154
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1155EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1331
Query: 475 D 475
+
Sbjct: 1332N 1334
>gb|S82175.1|S82175 RAR-gamma 2.2=retinoic acid receptor gamma isoform 2.2
{alternatively spliced} [Xenopus laevis, embryos, stage
24, mRNA, 2154 nt]
Length = 2154
Score = 224 bits (572), Expect = 1e-56
Identities = 139/393 (35%), Positives = 205/393 (51%)
Frame = +2
Query: 83 QSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
QS + E+ P SPP + Y P C VC DK++GYHY +CEGCK
Sbjct: 263 QSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGCK 415
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 202
GFFRR+IQK++ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 416 GFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRNDRNK--- 580
Query: 203 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPE 262
L S PE ELI+ V++AH T Q K+
Sbjct: 581 -----KKKEIKEEVVLPDSYEMPPEME----ELIQKVSKAHQETFPSLC---QLGKYTTN 724
Query: 263 DIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 322
+A + ++DL + F+++ T I ++V+FAK+LP F L DQI LLK
Sbjct: 725 S-------SADQRVRLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSA 883
Query: 323 CMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 382
C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDT
Sbjct: 884 CLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDT 1063
Query: 383 EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDL 442
E LL A+ L+ DR L E++EK Q+ L A + Y R+ + +P++LMK+TDL
Sbjct: 1064ETGLLSAICLICGDRMDLEEPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDL 1243
Query: 443 RMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
R I A R + +K+E P + PPL E+ E+
Sbjct: 1244RGISTKGAERAITLKLEIPGPM-PPLIREMLEN 1339
>emb|X78335.1|GGRARA21 G.gallus retinoic acid receptor alpha isoform 2-1 mRNA
Length = 1494
Score = 224 bits (572), Expect = 1e-56
Identities = 127/355 (35%), Positives = 191/355 (53%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 250 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 423
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + T E ELI+ V
Sbjct: 424 QKCFEVGMSKESVRNDRNKKKKDVPKTECSESYIV-------------TPEVEELIEKVR 564
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ + + + +D++ + F+++ T I + V+F
Sbjct: 565 KAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEF 714
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 715 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 894
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DD E LL A+ L+ DR L ++++K Q+ L A + Y
Sbjct: 895 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIY 1074
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
+ R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1075VRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1236
>gb|U41743.1|HSU41743 Human nucleophosmin-retinoic acid receptor alpha fusion protein
NPM-RAR short form mRNA, complete cds
Length = 1944
Score = 224 bits (572), Expect = 1e-56
Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +3
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 519 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 692
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 693 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 815
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 816 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 965
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 966 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1145
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 1146MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1325
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1326EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1502
Query: 475 D 475
+
Sbjct: 1503N 1505
>gb|U41742.1|HSU41742 Human nucleophosmin-retinoic acid receptor alpha fusion protein
NPM-RAR long form mRNA, complete cds
Length = 2073
Score = 224 bits (572), Expect = 1e-56
Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +3
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 648 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 821
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 822 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 944
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 945 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1094
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 1095IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1274
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 1275MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1454
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1455EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1631
Query: 475 D 475
+
Sbjct: 1632N 1634
>gb|S50916.1|S50916 PML-RAR fusion gene {fusion transcript} [human, mRNA Partial, 1284
nt]
Length = 1284
Score = 224 bits (572), Expect = 1e-56
Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 124 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 297
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 298 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 420
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 421 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 570
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 571 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 750
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 751 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 930
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 931 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1107
Query: 475 D 475
+
Sbjct: 1108N 1110
>gb|AF242867.1|AF242867 Synthetic construct ECFP-retinoic acid receptor alpha fusion protein
mRNA, complete cds
Length = 2085
Score = 224 bits (572), Expect = 1e-56
Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 958 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 1131
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 1132 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 1254
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 1255 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1404
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 1405 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1584
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 1585 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1764
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1765 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1941
Query: 475 D 475
+
Sbjct: 1942 N 1944
>emb|Y10094.1|MSRARA M.spretus mRNA for retinoic acid receptor-alpha
Length = 1474
Score = 224 bits (572), Expect = 1e-56
Identities = 130/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 269 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 442
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 443 QKCFEVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEVGE 565
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 566 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 715
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 716 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 895
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L
Sbjct: 896 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1075
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1076EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1252
Query: 475 D 475
+
Sbjct: 1253N 1255
>gb|BC008727.1|BC008727 Homo sapiens, retinoic acid receptor, alpha, clone MGC:1651
IMAGE:3163891, mRNA, complete cds
Length = 2441
Score = 224 bits (572), Expect = 1e-56
Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +3
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 726 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 899
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 900 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 1022
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 1023 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1172
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 1173 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1352
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 1353 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1532
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1533 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1709
Query: 475 D 475
+
Sbjct: 1710 N 1712
>ref|NM_000964.1| Homo sapiens retinoic acid receptor, alpha (RARA), mRNA
Length = 2907
Score = 224 bits (572), Expect = 1e-56
Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 364 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 537
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 538 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 660
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 661 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 810
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 811 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 990
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 991 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1170
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1171EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1347
Query: 475 D 475
+
Sbjct: 1348N 1350
>gb|S82173.1|S82173 RAR-gamma 2.1=retinoic acid receptor gamma isoform 2.1
{alternatively spliced} [Xenopus laevis, embryos, stage
24, mRNA, 2188 nt]
Length = 2188
Score = 224 bits (572), Expect = 1e-56
Identities = 139/393 (35%), Positives = 205/393 (51%)
Frame = +3
Query: 83 QSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
QS + E+ P SPP + Y P C VC DK++GYHY +CEGCK
Sbjct: 297 QSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGCK 449
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 202
GFFRR+IQK++ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 450 GFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRNDRNK--- 614
Query: 203 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPE 262
L S PE ELI+ V++AH T Q K+
Sbjct: 615 -----KKKEIKEEVVLPDSYEMPPEME----ELIQKVSKAHQETFPSLC---QLGKYTTN 758
Query: 263 DIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 322
+A + ++DL + F+++ T I ++V+FAK+LP F L DQI LLK
Sbjct: 759 S-------SADQRVRLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSA 917
Query: 323 CMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 382
C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDT
Sbjct: 918 CLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDT 1097
Query: 383 EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDL 442
E LL A+ L+ DR L E++EK Q+ L A + Y R+ + +P++LMK+TDL
Sbjct: 1098ETGLLSAICLICGDRMDLEEPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDL 1277
Query: 443 RMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
R I A R + +K+E P + PPL E+ E+
Sbjct: 1278RGISTKGAERAITLKLEIPGPM-PPLIREMLEN 1373
>emb|X06614.1|HSRRA Human mRNA for receptor of retinoic acid
Length = 2907
Score = 224 bits (572), Expect = 1e-56
Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 364 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 537
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 538 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 660
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 661 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 810
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 811 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 990
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 991 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1170
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1171EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1347
Query: 475 D 475
+
Sbjct: 1348N 1350
>emb|X06538.1|HSRAR Human mRNA for retinoic acid receptor
Length = 1920
Score = 224 bits (572), Expect = 1e-56
Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 488 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 661
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 662 QKCFEVGMSKESVRNDRNK-------------------KKKEVPKPECSESYTLTPEVGE 784
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 785 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 934
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 935 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1114
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L +R++ Q+ L
Sbjct: 1115MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLL 1294
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1295EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1471
Query: 475 D 475
+
Sbjct: 1472N 1474
>emb|X73972.1|GGRARA1 G.gallus RAR-alpha1 mRNA for retinoic acid receptor
Length = 1552
Score = 224 bits (572), Expect = 1e-56
Identities = 127/355 (35%), Positives = 191/355 (53%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 319 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 492
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + T E ELI+ V
Sbjct: 493 QKCFEVGMSKESVRNDRNKKKKDVPKTECSESYIV-------------TPEVEELIEKVR 633
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ + + + +D++ + F+++ T I + V+F
Sbjct: 634 KAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCIIKTVEF 783
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 784 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 963
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DD E LL A+ L+ DR L ++++K Q+ L A + Y
Sbjct: 964 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIY 1143
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
+ R+ + H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1144VRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1305
>gb|S56660.1|S56660 retinoic acid nuclear receptor isoform beta 2 [mice, embryonal
carcinoma cell line, PCC7-MZ1, mRNA, 2971 nt]
Length = 2971
Score = 224 bits (571), Expect = 1e-56
Identities = 128/355 (36%), Positives = 192/355 (54%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + C+I+KVTRN+CQ CR
Sbjct: 599 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHRDKNCVINKVTRNRCQYCRL 772
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM+ + V +D + ++ E T E +L + +
Sbjct: 773 QKCFEVGMSKESVRNDRNKKKKEPS-------------KQECTESYEMTAELDDLTEKIR 913
Query: 241 EAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDF 300
+AH T Q K+ +A ++DL + F+++ T I ++V+F
Sbjct: 914 KAHQETFPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEF 1063
Query: 301 AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGL 360
AK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G
Sbjct: 1064AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 1243
Query: 361 GVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY 420
G ++D +F L +DDTE LL A+ L+ DR L +++K Q+ L A + Y
Sbjct: 1244GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 1423
Query: 421 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
I R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E+
Sbjct: 1424IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLEN 1585
>gb|S56656.1|S56656 retinoic acid nuclear receptor isoform alpha 1 [mice, embryonal
carcinoma cell line, PCC7-MZ1, mRNA, 2061 nt]
Length = 2061
Score = 224 bits (571), Expect = 1e-56
Identities = 130/361 (36%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 799 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 972
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 973 QKCFDVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEVGE 1095
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 1096 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1245
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 1246 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1425
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L
Sbjct: 1426 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1605
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+ E
Sbjct: 1606 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEMLE 1782
Query: 475 D 475
+
Sbjct: 1783 N 1785
>gb|L11444.1|XELSRARG1A Xenopus laevis mRNA sequence
Length = 2416
Score = 224 bits (570), Expect = 2e-56
Identities = 145/423 (34%), Positives = 216/423 (50%), Gaps = 11/423 (2%)
Frame = +2
Query: 64 SYPGNLFKSKDSDLDMALSQSSQPAH-----------LPEEKPFPQVQSPPHSQKKGYIP 112
S+P +L K S L + + + + AH E+ P SPP + Y P
Sbjct: 431 SFPTDLPKEMAS-LSLTMGAAERSAHSDCISTVETQSTSSEEMVPSSPSPPPPPRV-YKP 604
Query: 113 SYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTR 172
C VC DK++GYHY +CEGCKGFFRR+IQK++ Y+C + C I+KVTR
Sbjct: 605 --------CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTR 754
Query: 173 NQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEE 232
N+CQ CR +KC VGM+ + V +D + L S PE
Sbjct: 755 NRCQFCRLQKCFQVGMSKEAVRNDRNK--------KKKEIKEEVVLPDSYEMPPEME--- 901
Query: 233 WELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITP 292
ELI+ V++AH T Q K+ +A + ++DL + F+++ T
Sbjct: 902 -ELIQKVSKAHQETFPSLC---QLGKYTTNS-------SADQRVQLDLGLWDKFSELSTK 1048
Query: 293 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 352
I ++V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R
Sbjct: 1049CIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNR 1228
Query: 353 GQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDS 412
Q+ N G G ++D +F L +DDTE LL A+ L+ DR L E++EK Q+
Sbjct: 1229TQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVEKLQEP 1408
Query: 413 FLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEV 472
L A + Y R+ + +P++LMK+TDLR I A R + +K+E P + PPL E+
Sbjct: 1409LLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKLEIPGPM-PPLIREM 1585
Query: 473 FED 475
E+
Sbjct: 1586LEN 1594
>emb|X59396.1|XLRARGB Xenopus laevis mRNA for retinoic acid receptor gamma B
Length = 2077
Score = 223 bits (567), Expect = 4e-56
Identities = 138/393 (35%), Positives = 204/393 (51%)
Frame = +1
Query: 83 QSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
QS + E+ P SPP + Y P C VC DK++GYHY +CEGCK
Sbjct: 217 QSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGCK 369
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 202
GFFRR+IQK++ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 370 GFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRNDRNK--- 534
Query: 203 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPE 262
L S PE ELI+ V++AH T Q K+
Sbjct: 535 -----KKKEIKEEVVLPDSYEMPPEME----ELIQKVSKAHQETFPSLC---QLGKYTTN 678
Query: 263 DIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 322
+A + ++DL + F+++ T I ++V+FAK+LP F L DQI LLK
Sbjct: 679 S-------SADQRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSA 837
Query: 323 CMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 382
C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDT
Sbjct: 838 CLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDT 1017
Query: 383 EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDL 442
E LL A+ L+ DR L E++EK Q+ L + Y R+ + +P++LMK+TDL
Sbjct: 1018ETGLLSAICLICGDRMDLEEPEKVEKLQEPLLEGLKFYARRRRPDKPYMFPRMLMKITDL 1197
Query: 443 RMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
R I A R + +K+E P + PPL E+ E+
Sbjct: 1198RGISTKGAERAITLKLEIPGPM-PPLIREMLEN 1293
>ref|XM_029728.3| Homo sapiens retinoic acid receptor, gamma (RARG), mRNA
Length = 2678
Score = 223 bits (567), Expect = 4e-56
Identities = 138/398 (34%), Positives = 205/398 (50%), Gaps = 5/398 (1%)
Frame = +1
Query: 83 QSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
QS + E+ P SPP + Y P C VC DK++GYHY +CEGCK
Sbjct: 388 QSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGCK 540
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 202
GFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 541 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK-- 708
Query: 203 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQKR 257
+K + + P E ELI V++AH T Q
Sbjct: 709 ----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QLG 831
Query: 258 KFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQII 317
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 832 KYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQIT 990
Query: 318 LLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSF 377
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 991 LLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPL 1170
Query: 378 NLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLM 437
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++LM
Sbjct: 1171EMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLM 1350
Query: 438 KVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
K+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1351KITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1461
>dbj|D86615.1|D86615 Polyandrocarpa misakiensis mRNA for retinoic acid receptor
homologue, partial cds
Length = 2245
Score = 222 bits (566), Expect = 5e-56
Identities = 124/366 (33%), Positives = 194/366 (52%), Gaps = 11/366 (3%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VCGDK++GYHY +CEGCKGFFRR++QK++ Y+C C+I+K TR++CQ CR
Sbjct: 208 CFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQ--YTCHRNKNCVINKSTRSRCQYCRL 381
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVT 240
+KC VGM + V +D + ++ + T E ++ V
Sbjct: 382 QKCFQVGMLKESVRNDRNKKRGKEKDGKTGDTSPSGQPEEIV-----VTPEIENIVSVVA 546
Query: 241 EAHVAT-----------NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKI 289
+AH+ T A+G K P D +P VD++ +S F+ +
Sbjct: 547 KAHLDTFPKNEDLNKYNTAEGQGDKPLSPPTPSDASGSP-------PPVDVKLWSKFSDL 705
Query: 290 ITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMA 349
T +I ++V+FAK +P F +L DQI LLK C+EI+ R RYD ++T++ + +
Sbjct: 706 STKSIIKIVEFAKSVPGFTDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLT 885
Query: 350 VTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 409
+ R QL+N G +++ +F SL+ F+LD TE LL A+ LM +DR L E++EK
Sbjct: 886 LNRDQLRNCAFGPMTEQVFGFAKSLTPFDLDHTEGGLLCAICLMCADRTELEDPEKVEKL 1065
Query: 410 QDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLF 469
Q+ + + + ++ + H +PK+LMK+ DLR IG R + ++ E P E PPL
Sbjct: 1066QEPLVEGLKWFARKKRPNKPHVFPKMLMKIADLRCIGFKGGDRAMSIRKEMPKESMPPLM 1245
Query: 470 LEVFED 475
E+ D
Sbjct: 1246REMLVD 1263
>ref|NM_031528.1| Rattus norvegicus Retinoic acid receptor, alpha (Rara), mRNA
Length = 2130
Score = 222 bits (566), Expect = 5e-56
Identities = 138/423 (32%), Positives = 211/423 (49%), Gaps = 7/423 (1%)
Frame = +1
Query: 60 PYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKP-FPQVQSPPHSQKKGYIPSYLDKD 118
PY+ L+ + ++ S S + P P P++ P
Sbjct: 361 PYSTPLRTPLWNGSNHSIETQSSSSEEIVPSPPSPPPLPRIYKP---------------- 492
Query: 119 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQEC 178
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ C
Sbjct: 493 --CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYC 660
Query: 179 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEE 232
R +KC VGM+ + V +D + +K KPE T E
Sbjct: 661 RLQKCFEVGMSKESVRNDRNK-------------------KKKETPKPECSESYTLTPEV 783
Query: 233 WELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITP 292
ELI+ V +A+ T Q K+ + + + +D++ + F+++ T
Sbjct: 784 GELIEKVRKANQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTK 933
Query: 293 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 352
I + V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R
Sbjct: 934 CIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNR 1113
Query: 353 GQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDS 412
Q+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+
Sbjct: 1114TQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEP 1293
Query: 413 FLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEV 472
L A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+
Sbjct: 1294LLEALKVYVRKRRPSQPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEM 1470
Query: 473 FED 475
E+
Sbjct: 1471LEN 1479
>gb|U15211.1|RNU15211 Rattus norvegicus retinoic acid receptor alpha 2 isoform (RAR)
mRNA, complete cds
Length = 2130
Score = 222 bits (566), Expect = 5e-56
Identities = 138/423 (32%), Positives = 211/423 (49%), Gaps = 7/423 (1%)
Frame = +1
Query: 60 PYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKP-FPQVQSPPHSQKKGYIPSYLDKD 118
PY+ L+ + ++ S S + P P P++ P
Sbjct: 361 PYSTPLRTPLWNGSNHSIETQSSSSEEIVPSPPSPPPLPRIYKP---------------- 492
Query: 119 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQEC 178
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ C
Sbjct: 493 --CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYC 660
Query: 179 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEE 232
R +KC VGM+ + V +D + +K KPE T E
Sbjct: 661 RLQKCFEVGMSKESVRNDRNK-------------------KKKETPKPECSESYTLTPEV 783
Query: 233 WELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITP 292
ELI+ V +A+ T Q K+ + + + +D++ + F+++ T
Sbjct: 784 GELIEKVRKANQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTK 933
Query: 293 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 352
I + V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R
Sbjct: 934 CIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNR 1113
Query: 353 GQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDS 412
Q+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+
Sbjct: 1114TQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEP 1293
Query: 413 FLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEV 472
L A + Y+ R+ H +PK+LMK+TDLR I A A R + +K+E P + PPL E+
Sbjct: 1294LLEALKVYVRKRRPSQPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSM-PPLIQEM 1470
Query: 473 FED 475
E+
Sbjct: 1471LEN 1479
>gb|AY046945.1| Mesocricetus auratus retinoic acid receptor gamma-2 gene, complete
cds
Length = 2510
Score = 222 bits (566), Expect = 5e-56
Identities = 138/398 (34%), Positives = 205/398 (50%), Gaps = 5/398 (1%)
Frame = +2
Query: 83 QSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
QS + E+ P SPP + Y P C VC DK++GYHY +CEGCK
Sbjct: 236 QSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGCK 388
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 202
GFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 389 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK-- 556
Query: 203 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQKR 257
+K + + P E ELI V++AH T Q
Sbjct: 557 ----------------KKEVKEECSPDSYELSPQLEELITKVSKAHQETFPSLC---QLG 679
Query: 258 KFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQII 317
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 680 KYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQIT 838
Query: 318 LLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSF 377
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 839 LLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPL 1018
Query: 378 NLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLM 437
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++LM
Sbjct: 1019EMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLM 1198
Query: 438 KVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
K+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1199KITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1309
>ref|NM_000966.1| Homo sapiens retinoic acid receptor, gamma (RARG), mRNA
Length = 2571
Score = 221 bits (564), Expect = 9e-56
Identities = 138/399 (34%), Positives = 205/399 (50%), Gaps = 5/399 (1%)
Frame = +3
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 324 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 476
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 477 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK- 647
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQK 256
+K + + P E ELI V++AH T Q
Sbjct: 648 -----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QL 767
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 768 GKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQI 926
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 927 TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 1106
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++L
Sbjct: 1107LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRML 1286
Query: 437 MKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1287MKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1400
>gb|M38258.1|HUMRARGA Human retinoic acid receptor gamma 1 mRNA, complete cds
Length = 2571
Score = 221 bits (564), Expect = 9e-56
Identities = 138/399 (34%), Positives = 205/399 (50%), Gaps = 5/399 (1%)
Frame = +3
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 324 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 476
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 477 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK- 647
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQK 256
+K + + P E ELI V++AH T Q
Sbjct: 648 -----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QL 767
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 768 GKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQI 926
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 927 TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 1106
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++L
Sbjct: 1107LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRML 1286
Query: 437 MKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1287MKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1400
>gb|M57707.1|HUMRARG Human retinoic acid receptor gamma mRNA, complete cds
Length = 1576
Score = 221 bits (564), Expect = 9e-56
Identities = 138/399 (34%), Positives = 205/399 (50%), Gaps = 5/399 (1%)
Frame = +2
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 377 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 529
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 530 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK- 700
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQK 256
+K + + P E ELI V++AH T Q
Sbjct: 701 -----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QL 820
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 821 GKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQI 979
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 980 TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 1159
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++L
Sbjct: 1160LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRML 1339
Query: 437 MKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1340MKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1453
>gb|BC013709.1|BC013709 Mus musculus, retinoic acid receptor, gamma, clone MGC:18523
IMAGE:3989967, mRNA, complete cds
Length = 2553
Score = 221 bits (564), Expect = 9e-56
Identities = 136/394 (34%), Positives = 205/394 (51%)
Frame = +2
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 227 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 379
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 380 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKK 553
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLP 261
++ + E + + ELI V++AH T Q K+
Sbjct: 554 KEVK-------------EEGLPDSYELSPQLEELITKVSKAHQETFPSLC---QLGKYTT 685
Query: 262 EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 321
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK
Sbjct: 686 NS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKA 844
Query: 322 CCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDD 381
C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DD
Sbjct: 845 ACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDD 1024
Query: 382 TEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTD 441
TE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++LMK+TD
Sbjct: 1025TETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITD 1204
Query: 442 LRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
LR I A R + +K+E P + PPL E+ E+
Sbjct: 1205LRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1303
>ref|NM_011244.1| Mus musculus retinoic acid receptor, gamma (Rarg), mRNA
Length = 1855
Score = 221 bits (564), Expect = 9e-56
Identities = 138/399 (34%), Positives = 205/399 (50%), Gaps = 5/399 (1%)
Frame = +1
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 493 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 645
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 646 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK- 816
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQK 256
+K + + P E ELI V++AH T Q
Sbjct: 817 -----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QL 936
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 937 GKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQI 1095
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1096TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 1275
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++L
Sbjct: 1276LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRML 1455
Query: 437 MKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1456MKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1569
>gb|M24857.1|HUMHRARC Human retinoic acid receptor gamma mRNA, complete cds
Length = 1903
Score = 221 bits (564), Expect = 9e-56
Identities = 138/399 (34%), Positives = 205/399 (50%), Gaps = 5/399 (1%)
Frame = +1
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 592 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 744
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 745 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK- 915
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQK 256
+K + + P E ELI V++AH T Q
Sbjct: 916 -----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QL 1035
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 1036GKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQI 1194
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1195TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 1374
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++L
Sbjct: 1375LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRML 1554
Query: 437 MKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1555MKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1668
>gb|BC012923.1|BC012923 Mus musculus, Similar to retinoic acid receptor, gamma, clone
MGC:11555 IMAGE:3154037, mRNA, complete cds
Length = 2381
Score = 221 bits (564), Expect = 9e-56
Identities = 138/399 (34%), Positives = 205/399 (50%), Gaps = 5/399 (1%)
Frame = +2
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 599 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 751
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 752 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK- 922
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQK 256
+K + + P E ELI V++AH T Q
Sbjct: 923 -----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QL 1042
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 1043GKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQI 1201
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1202TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 1381
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++L
Sbjct: 1382LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRML 1561
Query: 437 MKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1562MKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1675
>emb|X15848.1|MMRARG Mouse mRNA for retinoic acid receptor gamma
Length = 1912
Score = 221 bits (564), Expect = 9e-56
Identities = 138/399 (34%), Positives = 205/399 (50%), Gaps = 5/399 (1%)
Frame = +1
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 493 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 645
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 646 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK- 816
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQK 256
+K + + P E ELI V++AH T Q
Sbjct: 817 -----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QL 936
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 937 GKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQI 1095
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1096TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 1275
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++L
Sbjct: 1276LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRML 1455
Query: 437 MKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1456MKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1569
>gb|BC019098.1|BC019098 Homo sapiens, retinoic acid receptor, gamma, clone MGC:29569
IMAGE:5013273, mRNA, complete cds
Length = 2663
Score = 221 bits (564), Expect = 9e-56
Identities = 138/399 (34%), Positives = 205/399 (50%), Gaps = 5/399 (1%)
Frame = +3
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 315 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 467
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 468 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK- 638
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQK 256
+K + + P E ELI V++AH T Q
Sbjct: 639 -----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QL 758
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 759 GKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQI 917
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 918 TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 1097
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R+ + +P++L
Sbjct: 1098LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRML 1277
Query: 437 MKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1278MKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1391
>gb|L12060.1|HUMRARG7A Homo sapiens retinoic acid receptor (gamma-7) mRNA
Length = 1597
Score = 221 bits (563), Expect = 1e-55
Identities = 136/388 (35%), Positives = 202/388 (52%), Gaps = 5/388 (1%)
Frame = +1
Query: 93 EKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKS 152
E+ P SPP + Y P C VC DK++GYHY +CEGCKGFFRR+IQK+
Sbjct: 319 EEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKN 471
Query: 153 LHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXX 212
+ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 472 M--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK------------ 609
Query: 213 XXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQA 267
+K + + P E ELI V++AH T Q K+
Sbjct: 610 ------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QLGKYTTNS---- 750
Query: 268 PIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 327
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+
Sbjct: 751 ---SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL 921
Query: 328 SLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALL 387
LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDTE LL
Sbjct: 922 MLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLL 1101
Query: 388 QAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGA 447
A+ L+ DR L E+++K Q+ L A Y R+ + +P++LMK+TDLR I
Sbjct: 1102SAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGIST 1281
Query: 448 CHASRFLHMKVECPTELFPPLFLEVFED 475
A R + +K+E P + PPL E+ E+
Sbjct: 1282KGAERAITLKMEIPGPM-PPLIREMLEN 1362
>gb|M34475.1|MUSRARGB Mouse retinoic acid receptor gamma (RAR-gamma-B) mRNA, complete cds
Length = 2496
Score = 221 bits (563), Expect = 1e-55
Identities = 138/398 (34%), Positives = 204/398 (50%), Gaps = 5/398 (1%)
Frame = +1
Query: 83 QSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
QS + E+ P SPP + Y P C VC DK++GYHY +CEGCK
Sbjct: 214 QSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGCK 366
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 202
GFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 367 GFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK-- 534
Query: 203 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQKR 257
+K + + P E ELI V++AH T Q
Sbjct: 535 ----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QLG 657
Query: 258 KFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQII 317
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 658 KYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQIT 816
Query: 318 LLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSF 377
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 817 LLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPL 996
Query: 378 NLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLM 437
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R + +P++LM
Sbjct: 997 EMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRDPAKPYMFPRMLM 1176
Query: 438 KVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
K+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1177KITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1287
>gb|L11445.1|XELXRARA Xenopus laevis mRNA sequence
Length = 1791
Score = 221 bits (563), Expect = 1e-55
Identities = 129/362 (35%), Positives = 192/362 (52%), Gaps = 7/362 (1%)
Frame = +3
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 669 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 842
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWE 234
+KC VGM+ + V +D + +K KPE + E +
Sbjct: 843 QKCFEVGMSKESVRNDRNK-------------------KKKESPKPEAIESYILSPETQD 965
Query: 235 LIKTVTEAHVAT-NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPA 293
LI+ V +AH T A K F E + +D++ + F+++ T
Sbjct: 966 LIEKVQKAHQETFPALCQLGKYTTSFSSE-----------QRVSLDIDLWDKFSELSTKC 1112
Query: 294 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRG 353
I + V+FAK+LP F L DQI LLK C++I+ LR RY PD +T+T + + + R
Sbjct: 1113IIKTVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRT 1292
Query: 354 QLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSF 413
Q+ N G G ++D +F +DD E LL A+ L+ DR L ++++K Q+
Sbjct: 1293QMHNAGFGPLTDLVFAFANQPVPLEMDDAETGLLSAICLICGDRQDLEQPDKVDKLQEPL 1472
Query: 414 LLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 473
L A + Y+ R+ H +PK+LMK+TDLR + A A R + +K+E P + PL E+
Sbjct: 1473LEALKIYVRTRRPQKPHMFPKMLMKITDLRTVSAKGAERVITLKMEIPGAM--PLIQEML 1646
Query: 474 ED 475
E+
Sbjct: 1647EN 1652
>emb|AJ238614.1|SSC238614 Sus scrofa mRNA for thyroid hormone receptor beta 1 encoded by
c-erbA-b1 gene, partial
Length = 611
Score = 221 bits (563), Expect = 1e-55
Identities = 103/135 (76%), Positives = 109/135 (80%)
Frame = +2
Query: 95 PFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLH 154
P Q + KGYIPSYLD+DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQK+LH
Sbjct: 206 PGAQTFQTEEKKCKGYIPSYLDEDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLH 385
Query: 155 PSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXX 214
PSY+CKYEGKC+IDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA
Sbjct: 386 PSYACKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRR 565
Query: 215 XXXLQKSIGHKPEPT 229
LQ+SIGHKPEPT
Sbjct: 566 REELQRSIGHKPEPT 610
>gb|AF206315.1|AF206315 Ambystoma mexicanum retonoic acid receptor gamma 2 (NR1B3b) mRNA,
complete cds
Length = 4469
Score = 221 bits (562), Expect = 2e-55
Identities = 135/393 (34%), Positives = 204/393 (51%)
Frame = +2
Query: 83 QSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
QS + E+ P SPP + Y P C VC DK++GYHY +CEGCK
Sbjct: 257 QSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGCK 409
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 202
GFFRR+IQK++ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 410 GFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKK 583
Query: 203 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPE 262
++ + E E LI V++AH T Q K+
Sbjct: 584 EIK-------------EEVVTDSYEMPPEMEALIAKVSKAHQETFPSLC---QLGKYTTN 715
Query: 263 DIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 322
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK
Sbjct: 716 S-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAA 874
Query: 323 CMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 382
C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDT
Sbjct: 875 CLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDT 1054
Query: 383 EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDL 442
E LL A+ L+ DR L E+++K Q+ L A + Y R+ + + +P++LMK+TDL
Sbjct: 1055ETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDL 1234
Query: 443 RMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
R I A R + +K+E P + PPL E+ E+
Sbjct: 1235RGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1330
>gb|M34476.1|MUSRARGA Mouse retinoic acid receptor gamma (mRAR-gamma-A) mRNA, complete
cds
Length = 2715
Score = 220 bits (560), Expect = 3e-55
Identities = 138/399 (34%), Positives = 204/399 (50%), Gaps = 5/399 (1%)
Frame = +1
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S S + E+ P SPP + Y P C VC DK++GYHY +CEGC
Sbjct: 430 SLSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGC 582
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 583 KGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKK- 753
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEW-----ELIKTVTEAHVATNAQGSHWKQK 256
+K + + P E ELI V++AH T Q
Sbjct: 754 -----------------KKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLC---QL 873
Query: 257 RKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
K+ +A ++DL + F+++ T I ++V+FAK+LP F L DQI
Sbjct: 874 GKYTTNS-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQI 1032
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 376
LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L
Sbjct: 1033TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 1212
Query: 377 FNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLL 436
+DDTE LL A+ L+ DR L E+++K Q+ L A Y R + +P++L
Sbjct: 1213LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRDPAKPYMFPRML 1392
Query: 437 MKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
MK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1393MKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1506
>gb|AF206316.1|AF206316S1 Ambystoma mexicanum retonoic acid receptor gamma 2I (NR1B3c) mRNA,
complete cds
Length = 1426
Score = 219 bits (559), Expect = 3e-55
Identities = 135/393 (34%), Positives = 201/393 (50%)
Frame = +2
Query: 83 QSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
QS + E+ P SPP + Y P C VC DK++GYHY +CEGCK
Sbjct: 218 QSVETQSTSSEEMVPSSPSPPPPPRV-YKP--------CFVCNDKSSGYHYGVSSCEGCK 370
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAX 202
GFFRR+IQK++ Y+C + C I+KVTRN+CQ CR +KC VGM SK +
Sbjct: 371 GFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGM--------SKEVVA 520
Query: 203 XXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPE 262
++ + E E LI V++AH T Q K+
Sbjct: 521 AAAVRNDRNKKKKEIKEEVVTDSYEMPPEMEALIAKVSKAHQETFPSLC---QLGKYTTN 691
Query: 263 DIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGC 322
+A ++DL + F+++ T I ++V+FAK+LP F L DQI LLK
Sbjct: 692 S-------SADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAA 850
Query: 323 CMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT 382
C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D +F L +DDT
Sbjct: 851 CLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDT 1030
Query: 383 EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDL 442
E LL A+ L+ DR L E+++K Q+ L A + Y R+ + + +P++LMK+TDL
Sbjct: 1031ETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDL 1210
Query: 443 RMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
R I A R + +K+E P + PPL E+ E+
Sbjct: 1211RGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1306
>emb|X73973.1|GGRARG2 G.gallus RAR-gamma2 mRNA for retinoic acid receptor
Length = 1584
Score = 219 bits (557), Expect = 6e-55
Identities = 137/413 (33%), Positives = 207/413 (49%)
Frame = +3
Query: 63 CSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCV 122
C++PG A ++ E+ P SPP + Y P C
Sbjct: 321 CAWPG------------AAPHGAETQSSSSEEMVPNSPSPPPPPRV-YKP--------CF 437
Query: 123 VCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKK 182
VC DK++GYHY +CEGCKGFFRR+IQK++ Y+C + C I+KVTRN+CQ CR +K
Sbjct: 438 VCSDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQFCRLQK 611
Query: 183 CIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEA 242
C VGM+ + V +D + +++ PE + ELI+ V+ A
Sbjct: 612 CFEVGMSKEAVRNDRNK--------------KKKEVKEEAADSPELSPALEELIQKVSRA 749
Query: 243 HVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK 302
H T Q K+ Q + ++D + F+++ T I ++V+FAK
Sbjct: 750 HQETFPSLC---QLGKYTMSSSAQHRV-------QLDPGLWDKFSELATKCIIKIVEFAK 899
Query: 303 KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV 362
+LP F L DQI LLK C++I+ LR RY + +T+T + + + R Q+ N G G
Sbjct: 900 RLPGFTALSIADQITLLKAACLDILMLRICTRYTLEQDTMTFSDGLTLNRTQMHNAGFGP 1079
Query: 363 VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYIN 422
++D +F L +DDTE LL A+ L+ DR L E++E+ Q+ L A Y
Sbjct: 1080LTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRQDLEEPEQVERLQEPLLEALRVYAR 1259
Query: 423 YRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
R+ H +P++LMK+TDLR I A R + +K+E P + PPL E+ E+
Sbjct: 1260RRRPSKPHMFPRMLMKITDLRGISTKGAERAITLKMEIPGPM-PPLIREMLEN 1415
>gb|AF342939.1|AF342939 Danio rerio retinoic acid receptor gamma 1 mRNA, complete cds
Length = 2103
Score = 219 bits (557), Expect = 6e-55
Identities = 134/383 (34%), Positives = 199/383 (50%)
Frame = +1
Query: 93 EKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKS 152
E+ P SPP + Y P C VC DK++GYHY +CEGCKGFFRR+IQK+
Sbjct: 433 EEMVPSSPSPPPPPRV-YKP--------CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKN 585
Query: 153 LHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXX 212
+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 586 M--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKDEVIPPE 759
Query: 213 XXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNA 272
E + E EL+ V++AH T Q K+ I
Sbjct: 760 SY------------ELSGELEELVNKVSKAHQETFPSLC---QLGKYTTNSSSDHRI--- 885
Query: 273 PEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 332
++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ LR
Sbjct: 886 ----QLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRIC 1053
Query: 333 VRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLL 392
RY P+ +T+T + + + R Q+ N G G ++D +F L +DDTE LL A+ L
Sbjct: 1054TRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICL 1233
Query: 393 MSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASR 452
+ DR L ER+++ Q+ L A + Y R+ + H +P++LMK+TDLR I A R
Sbjct: 1234ICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAER 1413
Query: 453 FLHMKVECPTELFPPLFLEVFED 475
+ +K+E P + PPL E+ E+
Sbjct: 1414AITLKMEIPGPM-PPLIREMLEN 1479
>gb|S74156.1|S74156 zRAR gamma =retinoic acid receptor gamma [zebrafish, embryos, mRNA,
2109 nt]
Length = 2109
Score = 219 bits (557), Expect = 6e-55
Identities = 134/383 (34%), Positives = 199/383 (50%)
Frame = +1
Query: 93 EKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKS 152
E+ P SPP + Y P C VC DK++GYHY +CEGCKGFFRR+IQK+
Sbjct: 433 EEMVPSSPSPPPPPRV-YKP--------CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKN 585
Query: 153 LHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXX 212
+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 586 M--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKDEVIPPE 759
Query: 213 XXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNA 272
E + E EL+ V++AH T Q K+ I
Sbjct: 760 SY------------ELSGELEELVNKVSKAHQETFPSLC---QLGKYTTNSSSDHRI--- 885
Query: 273 PEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 332
++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ LR
Sbjct: 886 ----QLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRIC 1053
Query: 333 VRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLL 392
RY P+ +T+T + + + R Q+ N G G ++D +F L +DDTE LL A+ L
Sbjct: 1054TRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICL 1233
Query: 393 MSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASR 452
+ DR L ER+++ Q+ L A + Y R+ + H +P++LMK+TDLR I A R
Sbjct: 1234ICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAER 1413
Query: 453 FLHMKVECPTELFPPLFLEVFED 475
+ +K+E P + PPL E+ E+
Sbjct: 1414AITLKMEIPGPM-PPLIREMLEN 1479
>ref|NM_009024.1| Mus musculus retinoic acid receptor, alpha (Rara), mRNA
Length = 1759
Score = 212 bits (540), Expect = 5e-53
Identities = 122/333 (36%), Positives = 179/333 (53%), Gaps = 6/333 (1%)
Frame = +3
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 666 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 839
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D K+ +K KPE T E E
Sbjct: 840 QKCFDVGMSKESVRNDRKK-------------------KKKEAPKPECSESYSLTPEVGE 962
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 963 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1112
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +TLT + + + R Q
Sbjct: 1113IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTLTFSDGLTLNRTQ 1292
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L
Sbjct: 1293MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1472
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGA 447
A + Y+ R+ H +PK+LMK+TDLR I A
Sbjct: 1473EALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 1571
>gb|M60909.1|MUSRARAP Mouse retinoic acid receptor alpha' mRNA, complete cds
Length = 1759
Score = 212 bits (540), Expect = 5e-53
Identities = 122/333 (36%), Positives = 179/333 (53%), Gaps = 6/333 (1%)
Frame = +3
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 666 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 839
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D K+ +K KPE T E E
Sbjct: 840 QKCFDVGMSKESVRNDRKK-------------------KKKEAPKPECSESYSLTPEVGE 962
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 963 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1112
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +TLT + + + R Q
Sbjct: 1113IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTLTFSDGLTLNRTQ 1292
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L
Sbjct: 1293MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1472
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGA 447
A + Y+ R+ H +PK+LMK+TDLR I A
Sbjct: 1473EALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 1571
>ref|NM_031627.1| Rattus norvegicus nuclear receptor subfamily 1, group H, member 3
(Nr1h3), mRNA
Length = 1723
Score = 210 bits (534), Expect = 3e-52
Identities = 128/409 (31%), Positives = 212/409 (51%), Gaps = 5/409 (1%)
Frame = +1
Query: 71 KSKDSDLDMALSQSSQPAHLPEEKPFPQ-VQSPPHSQKKGYIPSYLDKDELCVVCGDKAT 129
+S L + L S A LP + P+ + P +KKG P L +ELC VCGDKA+
Sbjct: 160 QSTGGALRIGLESSEPTALLPRAETLPEPTELRPQKRKKGPAPKMLG-NELCSVCGDKAS 336
Query: 130 GYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMA 189
+HY ++CEGCKGFFRR++ K Y C G C +D R +CQECR +KC + GM
Sbjct: 337 AFHYNVLSCEGCKGFFRRSVIKGAR--YICHSGGHCPMDTYMRRKCQECRLRKCRHAGMR 510
Query: 190 TDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSIGHK--PEPTDEEWELIKTVTEAHVAT 246
+ VL + + RL + S + P+ + E+ +I+ + A
Sbjct: 511 EECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLGMIEKLVAAQQQC 690
Query: 247 NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPM 306
N + + + + P PI P+ + + F+HFT++ ++ +VDFAK+LP
Sbjct: 691 NRRS--FSDRLRVTPW-----PIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPG 849
Query: 307 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSD 365
F +L EDQI LLK +E+M L + RY+P SE++T + + R GL V +
Sbjct: 850 FLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFIN 1029
Query: 366 AIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRK 425
IF+ S++ L+D E ALL A+ + S+DRP + ++E+ Q +++ A Y++
Sbjct: 1030PIFEFSRSMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINH 1209
Query: 426 HHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
H +P++LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1210PHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1350
>gb|U11685.1|RNU11685 Rattus norvegicus orphan receptor RLD-1 (rld-1) mRNA, complete cds
Length = 1723
Score = 210 bits (534), Expect = 3e-52
Identities = 128/409 (31%), Positives = 212/409 (51%), Gaps = 5/409 (1%)
Frame = +1
Query: 71 KSKDSDLDMALSQSSQPAHLPEEKPFPQ-VQSPPHSQKKGYIPSYLDKDELCVVCGDKAT 129
+S L + L S A LP + P+ + P +KKG P L +ELC VCGDKA+
Sbjct: 160 QSTGGALRIGLESSEPTALLPRAETLPEPTELRPQKRKKGPAPKMLG-NELCSVCGDKAS 336
Query: 130 GYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMA 189
+HY ++CEGCKGFFRR++ K Y C G C +D R +CQECR +KC + GM
Sbjct: 337 AFHYNVLSCEGCKGFFRRSVIKGAR--YICHSGGHCPMDTYMRRKCQECRLRKCRHAGMR 510
Query: 190 TDLVLDDSK-RLAXXXXXXXXXXXXXXXXLQKSIGHK--PEPTDEEWELIKTVTEAHVAT 246
+ VL + + RL + S + P+ + E+ +I+ + A
Sbjct: 511 EECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLGMIEKLVAAQQQC 690
Query: 247 NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPM 306
N + + + + P PI P+ + + F+HFT++ ++ +VDFAK+LP
Sbjct: 691 NRRS--FSDRLRVTPW-----PIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPG 849
Query: 307 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSD 365
F +L EDQI LLK +E+M L + RY+P SE++T + + R GL V +
Sbjct: 850 FLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFIN 1029
Query: 366 AIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRK 425
IF+ S++ L+D E ALL A+ + S+DRP + ++E+ Q +++ A Y++
Sbjct: 1030PIFEFSRSMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINH 1209
Query: 426 HHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
H +P++LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1210PHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1350
>emb|X57528.1|MMRARA M.musculus mRNA for retinoic acid receptor-alpha
Length = 1926
Score = 209 bits (533), Expect = 3e-52
Identities = 120/333 (36%), Positives = 178/333 (53%), Gaps = 6/333 (1%)
Frame = +2
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 827 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 1000
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 1001 QKCFDVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEVGE 1123
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 1124 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 1273
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 1274 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 1453
Query: 355 LKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFL 414
+ N G G ++D +F L +DD E LL A+ L+ DR L ++++ Q+ L
Sbjct: 1454 MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLL 1633
Query: 415 LAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGA 447
A + Y+ R+ H +PK+LMK+TDLR I A
Sbjct: 1634 EALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 1732
>emb|AJ132601.1|MMU132601 Mus musculus mRNA for nuclear oxysterol receptor LXR-alpha
(LXR-alpha)
Length = 1686
Score = 209 bits (531), Expect = 6e-52
Identities = 126/403 (31%), Positives = 210/403 (51%), Gaps = 5/403 (1%)
Frame = +1
Query: 77 LDMALSQSSQPAHLPEEKPFPQ-VQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRC 135
L + L + A LP + P+ + P +KKG P L +ELC VCGDKA+G+HY
Sbjct: 274 LGIGLESAEPTALLPRAETLPEPTELRPQKRKKGPAPKMLG-NELCSVCGDKASGFHYNV 450
Query: 136 ITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLD 195
++CEGCKGFFRR++ K Y C G C +D R +CQECR +KC GM + VL
Sbjct: 451 LSCEGCKGFFRRSVIKGAR--YVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLS 624
Query: 196 DSK-RLAXXXXXXXXXXXXXXXXLQKSIGHK--PEPTDEEWELIKTVTEAHVATNAQGSH 252
+ + RL + S + P+ + E+ +I+ + A N +
Sbjct: 625 EEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLGMIEKLVAAQQQCNRRS-- 798
Query: 253 WKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPC 312
+ + + P PI P+ + + F+HFT++ ++ +VDFAK+LP F +L
Sbjct: 799 FSDRLRVTPW-----PIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSR 963
Query: 313 EDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLG 371
EDQI LLK +E+M L + RY+P SE++T + + R GL V + IF+
Sbjct: 964 EDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFS 1143
Query: 372 MSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHF 431
+++ L+D E ALL A+ + S+DRP + ++E+ Q +++ A Y++ H
Sbjct: 1144RAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDRLM 1323
Query: 432 WPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+P++LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1324FPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1446
>ref|NM_013839.1| Mus musculus nuclear receptor subfamily 1, group H, member 3
(Nr1h3), mRNA
Length = 1753
Score = 209 bits (531), Expect = 6e-52
Identities = 126/403 (31%), Positives = 210/403 (51%), Gaps = 5/403 (1%)
Frame = +1
Query: 77 LDMALSQSSQPAHLPEEKPFPQ-VQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRC 135
L + L + A LP + P+ + P +KKG P L +ELC VCGDKA+G+HY
Sbjct: 343 LGIGLESAEPTALLPRAETLPEPTELRPQKRKKGPAPKMLG-NELCSVCGDKASGFHYNV 519
Query: 136 ITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLD 195
++CEGCKGFFRR++ K Y C G C +D R +CQECR +KC GM + VL
Sbjct: 520 LSCEGCKGFFRRSVIKGAR--YVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLS 693
Query: 196 DSK-RLAXXXXXXXXXXXXXXXXLQKSIGHK--PEPTDEEWELIKTVTEAHVATNAQGSH 252
+ + RL + S + P+ + E+ +I+ + A N +
Sbjct: 694 EEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLGMIEKLVAAQQQCNRRS-- 867
Query: 253 WKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPC 312
+ + + P PI P+ + + F+HFT++ ++ +VDFAK+LP F +L
Sbjct: 868 FSDRLRVTPW-----PIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSR 1032
Query: 313 EDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLG 371
EDQI LLK +E+M L + RY+P SE++T + + R GL V + IF+
Sbjct: 1033EDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFS 1212
Query: 372 MSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHF 431
+++ L+D E ALL A+ + S+DRP + ++E+ Q +++ A Y++ H
Sbjct: 1213RAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDRLM 1392
Query: 432 WPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+P++LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1393FPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1515
>gb|BC012646.1|BC012646 Mus musculus, Similar to nuclear receptor subfamily 1, group H,
member 3, clone MGC:13756 IMAGE:4163109, mRNA, complete
cds
Length = 1765
Score = 209 bits (531), Expect = 6e-52
Identities = 126/403 (31%), Positives = 210/403 (51%), Gaps = 5/403 (1%)
Frame = +2
Query: 77 LDMALSQSSQPAHLPEEKPFPQ-VQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRC 135
L + L + A LP + P+ + P +KKG P L +ELC VCGDKA+G+HY
Sbjct: 284 LGIGLESAEPTALLPRAETLPEPTELRPQKRKKGPAPKMLG-NELCSVCGDKASGFHYNV 460
Query: 136 ITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLD 195
++CEGCKGFFRR++ K Y C G C +D R +CQECR +KC GM + VL
Sbjct: 461 LSCEGCKGFFRRSVIKGAR--YVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLS 634
Query: 196 DSK-RLAXXXXXXXXXXXXXXXXLQKSIGHK--PEPTDEEWELIKTVTEAHVATNAQGSH 252
+ + RL + S + P+ + E+ +I+ + A N +
Sbjct: 635 EEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLGMIEKLVAAQQQCNRRS-- 808
Query: 253 WKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPC 312
+ + + P PI P+ + + F+HFT++ ++ +VDFAK+LP F +L
Sbjct: 809 FSDRLRVTPW-----PIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSR 973
Query: 313 EDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLG 371
EDQI LLK +E+M L + RY+P SE++T + + R GL V + IF+
Sbjct: 974 EDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFS 1153
Query: 372 MSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHF 431
+++ L+D E ALL A+ + S+DRP + ++E+ Q +++ A Y++ H
Sbjct: 1154RAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDPLM 1333
Query: 432 WPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+P++LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1334FPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1456
>gb|AF085745.1|AF085745 Mus musculus nuclear orphan receptor LXR-alpha mRNA, complete cds
Length = 1665
Score = 209 bits (531), Expect = 6e-52
Identities = 126/403 (31%), Positives = 210/403 (51%), Gaps = 5/403 (1%)
Frame = +1
Query: 77 LDMALSQSSQPAHLPEEKPFPQ-VQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRC 135
L + L + A LP + P+ + P +KKG P L +ELC VCGDKA+G+HY
Sbjct: 238 LGIGLESAEPTALLPRAETLPEPTELRPQKRKKGPAPKMLG-NELCSVCGDKASGFHYNV 414
Query: 136 ITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLD 195
++CEGCKGFFRR++ K Y C G C +D R +CQECR +KC GM + VL
Sbjct: 415 LSCEGCKGFFRRSVIKGAR--YVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLS 588
Query: 196 DSK-RLAXXXXXXXXXXXXXXXXLQKSIGHK--PEPTDEEWELIKTVTEAHVATNAQGSH 252
+ + RL + S + P+ + E+ +I+ + A N +
Sbjct: 589 EEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLGMIEKLVAAQQQCNRRS-- 762
Query: 253 WKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPC 312
+ + + P PI P+ + + F+HFT++ ++ +VDFAK+LP F +L
Sbjct: 763 FSDRLRVTPW-----PIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSR 927
Query: 313 EDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLG 371
EDQI LLK +E+M L + RY+P SE++T + + R GL V + IF+
Sbjct: 928 EDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFS 1107
Query: 372 MSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHF 431
+++ L+D E ALL A+ + S+DRP + ++E+ Q +++ A Y++ H
Sbjct: 1108RAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDPLM 1287
Query: 432 WPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+P++LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1288FPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1410
>ref|NM_005693.1| Homo sapiens nuclear receptor subfamily 1, group H, member 3
(NR1H3), mRNA
Length = 1528
Score = 207 bits (528), Expect = 1e-51
Identities = 122/386 (31%), Positives = 203/386 (51%), Gaps = 4/386 (1%)
Frame = +3
Query: 93 EKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKS 152
E P + P +KKG P L +ELC VCGDKA+G+HY ++CEGCKGFFRR++ K
Sbjct: 246 EPPSEPTEIRPQKRKKGPAPKMLG-NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKG 422
Query: 153 LHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXX 211
H Y C G C +D R +CQECR +KC GM + VL + + RL
Sbjct: 423 AH--YICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQA 596
Query: 212 XXXXXXLQKSIGHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPI 269
++S + P+ + E+ +I+ + A N + + + + P P+
Sbjct: 597 HATSLPPRRSSPPQILPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PM 755
Query: 270 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 329
P + + F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L
Sbjct: 756 APDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLL 935
Query: 330 RAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQ 388
+ RY+P SE++T + + R GL V + IF+ +++ L+D E ALL
Sbjct: 936 ETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLI 1115
Query: 389 AVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGAC 448
A+ + S+DRP + ++E+ Q +++ A Y++ H +P++LMK+ LR + +
Sbjct: 1116AISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSV 1295
Query: 449 HASRFLHMKVECPTELFPPLFLEVFE 474
H+ + ++++ + PPL E+++
Sbjct: 1296HSEQVFALRLQ--DKKLPPLLSEIWD 1367
>gb|U22662.1|HSU22662 Human nuclear orphan receptor LXR-alpha mRNA, complete cds
Length = 1528
Score = 207 bits (528), Expect = 1e-51
Identities = 122/386 (31%), Positives = 203/386 (51%), Gaps = 4/386 (1%)
Frame = +3
Query: 93 EKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKS 152
E P + P +KKG P L +ELC VCGDKA+G+HY ++CEGCKGFFRR++ K
Sbjct: 246 EPPSEPTEIRPQKRKKGPAPKMLG-NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKG 422
Query: 153 LHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK-RLAXXXXXXXXXX 211
H Y C G C +D R +CQECR +KC GM + VL + + RL
Sbjct: 423 AH--YICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQA 596
Query: 212 XXXXXXLQKSIGHK--PEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPI 269
++S + P+ + E+ +I+ + A N + + + + P P+
Sbjct: 597 HATSLPPRRSSPPQILPQLSPEQLGMIEKLVAAQQQCNRRS--FSDRLRVTPW-----PM 755
Query: 270 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 329
P + + F+HFT++ ++ +VDFAK+LP F +L EDQI LLK +E+M L
Sbjct: 756 APDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLL 935
Query: 330 RAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQ 388
+ RY+P SE++T + + R GL V + IF+ +++ L+D E ALL
Sbjct: 936 ETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLI 1115
Query: 389 AVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGAC 448
A+ + S+DRP + ++E+ Q +++ A Y++ H +P++LMK+ LR + +
Sbjct: 1116AISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSV 1295
Query: 449 HASRFLHMKVECPTELFPPLFLEVFE 474
H+ + ++++ + PPL E+++
Sbjct: 1296HSEQVFALRLQ--DKKLPPLLSEIWD 1367
>emb|X74497.1|HSTHRBI H.sapiens mRNA for thyroid hormone receptor beta-2 isoform
Length = 471
Score = 203 bits (517), Expect = 3e-50
Identities = 97/122 (79%), Positives = 105/122 (85%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 60
MNYCM E++EV PAA SNCYMQ TDY AY EDSP SG D QAVPS++IYMEQAWAVNQP
Sbjct: 106 MNYCMQEIYEVHPAAGSNCYMQSTDYYAYFEDSPGYSGCDAQAVPSNNIYMEQAWAVNQP 285
Query: 61 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKP-FPQVQSPPHSQKKGYIPSYLDKDE 119
YTCSYPGN+FKSKDSDLDMAL+Q SQP + EEKP F QVQSP +SQKKGYIPSYLDKDE
Sbjct: 286 YTCSYPGNMFKSKDSDLDMALNQYSQPEYFTEEKPTFSQVQSPSYSQKKGYIPSYLDKDE 465
Query: 120 LC 121
LC
Sbjct: 466 LC 471
>dbj|D86614.1|D86614 Polyandrocarpa misakiensis mRNA for retinoic acid receptor
homologue, partial cds
Length = 1987
Score = 193 bits (490), Expect = 3e-47
Identities = 113/348 (32%), Positives = 180/348 (51%), Gaps = 11/348 (3%)
Frame = +3
Query: 139 EGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK 198
EGCKGFFRR++QK++ Y+C C+I+K TR++CQ CR +KC VGM + V +D
Sbjct: 3 EGCKGFFRRSVQKNMQ--YTCHRNKNCVINKSTRSRCQYCRLQKCFQVGMLKESVRNDRN 176
Query: 199 RLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVAT-----------N 247
+ ++ + T E ++ V +AH+ T
Sbjct: 177 KKRGKEKDGKTGDTSPSGQPEEIV-----VTPEIENIVSVVAKAHLDTFPKNEDLNKYNT 341
Query: 248 AQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMF 307
A+G K P D +P VD++ +S F+ + T +I ++V+FAK +P F
Sbjct: 342 AEGQGDKPLSPPTPSDASGSP-------PPVDVKLWSKFSDLSTKSIIKIVEFAKSVPGF 500
Query: 308 CELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAI 367
+L DQI LLK C+EI+ R RYD ++T++ + + + R QL+N G +++ +
Sbjct: 501 TDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLTLNRDQLRNCAFGPMTEQV 680
Query: 368 FDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHH 427
F SL+ F+LD TE LL A+ LM +DR L E++EK Q+ + + + ++ +
Sbjct: 681 FGFAKSLTPFDLDHTEGGLLCAICLMCADRTELEDPEKVEKPQEPLVEGLKWFARKKRPN 860
Query: 428 VTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 475
H +PK+LMK+ DLR IG R + ++ E P E PPL E+ D
Sbjct: 861 KPHVFPKMLMKIADLRCIGFKGGDRAMSIRKEMPKESMPPLMREMLVD 1004
>gb|AF034086.2|AF034086 Celuca pugilator ecdysteroid receptor (UpEcR) mRNA, complete cds
Length = 4562
Score = 190 bits (483), Expect = 2e-46
Identities = 125/390 (32%), Positives = 189/390 (48%), Gaps = 21/390 (5%)
Frame = +1
Query: 106 QKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKC 165
+KKG IP ++ELC+VCGD+A+GYHY +TCEGCKGFFRR+I K + Y CKY C
Sbjct: 676 KKKGPIPR--QQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITK--NAVYQCKYGNNC 843
Query: 166 IIDKVTRNQCQECRFKKCIYVGMATDLVL---------------DDSKRLAXXXXXXXXX 210
+D R +CQECR KKC+ VGM + V+ D K
Sbjct: 844 EMDMYMRRKCQECRLKKCLNVGMRPECVVPESQCQVKREQKKARDKDKTYPSLGSPIAED 1023
Query: 211 XXXXXXXLQKSIGHKPE-----PTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIG 265
+ K + P T E+ ELI T+ + Q+ P +
Sbjct: 1024 KAAPISPVSKDMSAAPRLNVKPLTREQEELINTLV------------YYQEEFEQPTEAD 1167
Query: 266 QAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME 325
I +G F H T++ + +V+F+K+LP F L EDQI LLK C E
Sbjct: 1168 VKKIRFNFDGEDTSDMRFRHITEMTILTVQLIVEFSKQLPGFATLQREDQITLLKACSSE 1347
Query: 326 IMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVA 385
+M LRAA RYD ++++ T+ GLG ++ +F SL +D+ E A
Sbjct: 1348 VMMLRAARRYDAKTDSIVFGNNYPYTQASYALAGLGESAEILFRFCRSLCKMKVDNAEYA 1527
Query: 386 LLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI-NYRKHHVTHFWPKLLMKVTDLRM 444
LL A+ + S+RP L ++++EK Q+ +L A + Y+ N R + KLL +T+LR
Sbjct: 1528 LLAAIAIF-SERPNLKELKKVEKLQEIYLEALKSYVENRRLPRSNMVFAKLLNILTELRT 1704
Query: 445 IGACHASRFLHMKVECPTELFPPLFLEVFE 474
+G ++ + ++ + PP E+++
Sbjct: 1705 LGNINSEMCFSLTLK--NKRLPPFLAEIWD 1788
>gb|AF342940.1|AF342940 Danio rerio retinoic acid receptor gamma 2 mRNA, partial cds
Length = 1101
Score = 190 bits (483), Expect = 2e-46
Identities = 117/343 (34%), Positives = 173/343 (50%)
Frame = +1
Query: 93 EKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKS 152
E+ P SPP + Y P C VC DK++GYHY +CEGCKGFFRR+IQK+
Sbjct: 172 EEMVPSSPSPPPPPRV-YKP--------CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKN 324
Query: 153 LHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXX 212
+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 325 M--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKDEVIPPE 498
Query: 213 XXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNA 272
E + E EL+ V++AH T Q K+ I
Sbjct: 499 SY------------ELSGELEELVNKVSKAHQETFPSLC---QLGKYTTNSSSDHRI--- 624
Query: 273 PEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 332
++DL + F+++ T I ++V+FAK LP F L DQI LLK C++I+ LR
Sbjct: 625 ----QLDLGLWDKFSELSTKCIIKIVEFAKALPGFTTLTIADQITLLKSACLDILMLRIC 792
Query: 333 VRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLL 392
RY P+ +T+T + + + R Q+ N G G ++D +F L +DDTE LL A+ L
Sbjct: 793 TRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICL 972
Query: 393 MSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 435
+ DR L ER+++ Q+ L A + Y R+ + H +PK+
Sbjct: 973 ICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPKI 1101
>gb|L03400.1|ZEFRARGII Zebrafish retinoic acid receptor gamma-2 (RAR-gamma) mRNA, partial
cds
Length = 1101
Score = 190 bits (483), Expect = 2e-46
Identities = 117/343 (34%), Positives = 173/343 (50%)
Frame = +1
Query: 93 EKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKS 152
E+ P SPP + Y P C VC DK++GYHY +CEGCKGFFRR+IQK+
Sbjct: 172 EEMVPSSPSPPPPPRV-YKP--------CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKN 324
Query: 153 LHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXX 212
+ Y+C + C I+KVTRN+CQ CR +KC VGM+ + V +D +
Sbjct: 325 M--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKDEVIPPE 498
Query: 213 XXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNA 272
E + E EL+ V++AH T Q K+ I
Sbjct: 499 SY------------ELSGELEELVNKVSKAHQETFPSLC---QLGKYTTNSSSDHRI--- 624
Query: 273 PEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 332
++DL + F+++ T I ++V+FAK LP F L DQI LLK C++I+ LR
Sbjct: 625 ----QLDLGLWDKFSELSTKCIIKIVEFAKALPGFTTLTIADQITLLKSACLDILMLRIC 792
Query: 333 VRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLL 392
RY P+ +T+T + + + R Q+ N G G ++D +F L +DDTE LL A+ L
Sbjct: 793 TRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICL 972
Query: 393 MSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 435
+ DR L ER+++ Q+ L A + Y R+ + H +PK+
Sbjct: 973 ICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPKI 1101
>emb|Y11533.1|TMECDYREC T.molitor mRNA for ecdysone receptor
Length = 2469
Score = 189 bits (481), Expect = 4e-46
Identities = 127/383 (33%), Positives = 191/383 (49%), Gaps = 14/383 (3%)
Frame = +1
Query: 106 QKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKC 165
+KKG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR+I K+ Y CKY C
Sbjct: 1180 KKKG--PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNA--VYQCKYGNNC 1347
Query: 166 IIDKVTRNQCQECRFKKCIYVGMATDLVLDDS----KRLAXXXXXXXXXXXXXXXXLQKS 221
ID R +CQECR KKC+ VGM + V+ + KR
Sbjct: 1348 EIDMYMRRKCQECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKPNSTTNGSPDV 1527
Query: 222 IGHKPEPTDEEWELIKTVTEAHVATNAQGSH--------WKQKRKFLPEDIGQAPIVNAP 273
I +PE +D E KT+T + + + Q P + I+N P
Sbjct: 1528 IKIEPELSDSE----KTLTNGRNRISPEQEELILIHRLVYFQNEYEHPSEEDVKRIINQP 1695
Query: 274 EGGKVDLEA-FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 332
G+ E F H T+I + +V+FAK+LP F +L EDQI LLK C E+M R A
Sbjct: 1696 IDGEDQCEIRFRHTTEITILTVQLIVEFAKRLPGFDKLLQEDQIALLKACSSEVMMFRMA 1875
Query: 333 VRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLL 392
RYD S+++ R G+G + + ++ S +D+ E ALL A+++
Sbjct: 1876 RRYDVQSDSILFVNNQPYPRDSYNLAGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVI 2055
Query: 393 MSSDRPGLACVERIEKYQDSFLLAFEHYI-NYRKHHVTHFWPKLLMKVTDLRMIGACHAS 451
S+RP L ++EK Q+ +L A Y+ N R + KLL +T+LR +G ++
Sbjct: 2056 F-SERPSLIEGWKVEKIQEIYLEALRAYVDNRRSPSRGTIFAKLLSVLTELRTLGNQNSE 2232
Query: 452 RFLHMKVECPTELFPPLFLEVFE 474
+ +K++ + PP E+++
Sbjct: 2233 MCISLKLK--NKKLPPFLDEIWD 2295
>dbj|AB073784.1|AB073784 Paralichthys olivaceus fRAR-2 mRNA for retinoic acid receptor
unknown type, partial cds
Length = 854
Score = 187 bits (474), Expect = 2e-45
Identities = 106/309 (34%), Positives = 163/309 (52%)
Frame = +1
Query: 127 KATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYV 186
K++GYHY CEGCKGFFRR+IQK++ Y+C E CII+KVTRN+CQ CR +KC V
Sbjct: 1 KSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRLQKCFAV 174
Query: 187 GMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVAT 246
GM+ + V +D + + + E T E +I+ + +AH T
Sbjct: 175 GMSKESVRNDRNKKKKESP-------------KPELAESYELTAELESIIEKIRKAHQET 315
Query: 247 NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPM 306
Q K+ +A ++DL + F+++ T I ++V+FAK++P
Sbjct: 316 FPSLC---QLGKYTTNS-------SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRVPG 465
Query: 307 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDA 366
F L DQI LLK C++I+ LR RY PD +T+T + + + R Q+ N G G ++D
Sbjct: 466 FTGLTIADQITLLKAACLDILILRICTRYTPDKDTMTFSDGLTLNRTQMHNAGFGPLTDL 645
Query: 367 IFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKH 426
+F L +DDTE LL A+ L+S DR L ++++ Q+ L A + Y+ R+
Sbjct: 646 VFTFANQLLPIEMDDTETGLLSAICLISGDRQDLEEPSKVDQLQEPLLEALKIYVRKRRP 825
Query: 427 HVTHFWPKL 435
H +PK+
Sbjct: 826 SKPHMFPKM 852
>gb|AF049136.1|AF049136 Locusta migratoria ecdysone receptor mRNA, complete cds
Length = 2401
Score = 187 bits (474), Expect = 2e-45
Identities = 121/379 (31%), Positives = 188/379 (48%), Gaps = 10/379 (2%)
Frame = +1
Query: 106 QKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKC 165
+KKG P ++ELC+VCGD+A+GYHY +TCEGCKGFFRR+I K+ Y CKY C
Sbjct: 1039 KKKGAAPR--QQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNA--VYQCKYGNNC 1206
Query: 166 IIDKVTRNQCQECRFKKCIYVGMATDLVLDD---------SKRLAXXXXXXXXXXXXXXX 216
ID R +CQECR KKC+ VGM + V+ + K
Sbjct: 1207 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKDKDKPNSTTNGSPEV 1386
Query: 217 XLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGG 276
+ K I K EP IK V+ + +++ + + E+ + EG
Sbjct: 1387 MMLKDIDAKVEPERPLSNGIKPVSPEQEELIHRLVYFQNEYESPSEEDLRRVTSQPTEGE 1566
Query: 277 KVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYD 336
F H T+I + +V+FAK+LP F +L EDQI LLK C E+M R A RYD
Sbjct: 1567 DQSDVRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYD 1746
Query: 337 PDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSD 396
+S+++ T+ G+G + + + + +D+ E ALL A+++ S+
Sbjct: 1747 VNSDSILFANNQPYTKDSYNLAGMGETIEDMLRFCRQMYAMKVDNAEYALLTAIVIF-SE 1923
Query: 397 RPGLACVERIEKYQDSFLLAFEHYI-NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLH 455
RP L ++EK Q+ +L A + Y+ N R+ + KLL +T+LR +G ++
Sbjct: 1924 RPSLVEGWKVEKIQEIYLEALKAYVDNRRRPKSGTIFAKLLSVLTELRTLGNQNSEMCFS 2103
Query: 456 MKVECPTELFPPLFLEVFE 474
+K++ + PP E+++
Sbjct: 2104 LKLK--NKKLPPFLAEIWD 2154
>ref|NM_031626.1| Rattus norvegicus nuclear receptor subfamily 1, group H, member 2
(Nr1h2), mRNA
Length = 1959
Score = 184 bits (468), Expect = 1e-44
Identities = 122/421 (28%), Positives = 194/421 (45%), Gaps = 28/421 (6%)
Frame = +1
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S+ S A++ E + P +KKG P L ELC VCGDKA+G+HY ++CEGC
Sbjct: 379 SEGSSSAYIVEPE-----DEPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGC 540
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR++ Y+C+ G C +D R +CQ CR +KC GM VL + +
Sbjct: 541 KGFFRRSVVHGGAGRYACRGSGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQ--- 711
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWK------- 254
+QK +P P E A T+ S
Sbjct: 712 -----------IRKKKIQKQQQQQPPPPTEPASGSSARPAASPGTSEASSQGSGEGEGIQ 858
Query: 255 -------------------QKRKFLPED-IGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
KR F + + P+ P+ + F+HFT++ ++
Sbjct: 859 LTAAQELMIQQLVAVQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISV 1038
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+VDFAK++P F +L EDQI LLK +EIM L A RY+ ++E +T + ++
Sbjct: 1039QEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDD 1218
Query: 355 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSF 413
GL V + IF+ ++ LDD E ALL A+ + S+DRP + R+E Q +
Sbjct: 1219FHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPSRVEALQQPY 1398
Query: 414 LLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 473
+ A Y ++ +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1399VEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1572
Query: 474 E 474
+
Sbjct: 1573D 1575
>gb|U14533.1|RNU14533 Rattus norvegicus orphan receptor mRNA, complete cds
Length = 1959
Score = 184 bits (468), Expect = 1e-44
Identities = 122/421 (28%), Positives = 194/421 (45%), Gaps = 28/421 (6%)
Frame = +1
Query: 82 SQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGC 141
S+ S A++ E + P +KKG P L ELC VCGDKA+G+HY ++CEGC
Sbjct: 379 SEGSSSAYIVEPE-----DEPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGC 540
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
KGFFRR++ Y+C+ G C +D R +CQ CR +KC GM VL + +
Sbjct: 541 KGFFRRSVVHGGAGRYACRGSGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQ--- 711
Query: 202 XXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWK------- 254
+QK +P P E A T+ S
Sbjct: 712 -----------IRKKKIQKQQQQQPPPPTEPASGSSARPAASPGTSEASSQGSGEGEGIQ 858
Query: 255 -------------------QKRKFLPED-IGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
KR F + + P+ P+ + F+HFT++ ++
Sbjct: 859 LTAAQELMIQQLVAVQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISV 1038
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+VDFAK++P F +L EDQI LLK +EIM L A RY+ ++E +T + ++
Sbjct: 1039QEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDD 1218
Query: 355 LKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSF 413
GL V + IF+ ++ LDD E ALL A+ + S+DRP + R+E Q +
Sbjct: 1219FHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPSRVEALQQPY 1398
Query: 414 LLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 473
+ A Y ++ +P++LMK+ LR + + H+ + ++++ + PPL E++
Sbjct: 1399VEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIW 1572
Query: 474 E 474
+
Sbjct: 1573D 1575
>gb|BC007790.1|BC007790 Homo sapiens, nuclear receptor subfamily 1, group H, member 2,
clone MGC:14108 IMAGE:3636961, mRNA, complete cds
Length = 1934
Score = 184 bits (468), Expect = 1e-44
Identities = 118/400 (29%), Positives = 191/400 (47%), Gaps = 20/400 (5%)
Frame = +2
Query: 95 PFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLH 154
P P+ + P +KKG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ +
Sbjct: 335 PDPE-EEPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGA 508
Query: 155 PSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS----KRLAXXXXXXXXX 210
Y+C+ G C +D R +CQ+CR +KC GM VL + K++
Sbjct: 509 RRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQS 688
Query: 211 XXXXXXXLQKSIGHKPEPT--------------DEEWELIKTVTEAHVATNAQGSHWKQK 256
Q S P + E + E + K
Sbjct: 689 QSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNK 868
Query: 257 RKFLPED-IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQ 315
R F + + P+ P+ + F+HFT++ ++ +VDFAK++P F +L EDQ
Sbjct: 869 RSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQ 1048
Query: 316 IILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSL 374
I LLK +EIM L A RY+ ++E +T + ++ GL V + IF+ ++
Sbjct: 1049IALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAM 1228
Query: 375 SSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPK 434
LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P+
Sbjct: 1229RRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPR 1408
Query: 435 LLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1409MLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1522
>ref|NM_007121.1| Homo sapiens nuclear receptor subfamily 1, group H, member 2
(NR1H2), mRNA
Length = 2010
Score = 184 bits (468), Expect = 1e-44
Identities = 118/400 (29%), Positives = 191/400 (47%), Gaps = 20/400 (5%)
Frame = +2
Query: 95 PFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLH 154
P P+ + P +KKG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ +
Sbjct: 431 PDPE-EEPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGA 604
Query: 155 PSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS----KRLAXXXXXXXXX 210
Y+C+ G C +D R +CQ+CR +KC GM VL + K++
Sbjct: 605 RRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQS 784
Query: 211 XXXXXXXLQKSIGHKPEPT--------------DEEWELIKTVTEAHVATNAQGSHWKQK 256
Q S P + E + E + K
Sbjct: 785 QSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNK 964
Query: 257 RKFLPED-IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQ 315
R F + + P+ P+ + F+HFT++ ++ +VDFAK++P F +L EDQ
Sbjct: 965 RSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQ 1144
Query: 316 IILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSL 374
I LLK +EIM L A RY+ ++E +T + ++ GL V + IF+ ++
Sbjct: 1145IALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAM 1324
Query: 375 SSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPK 434
LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P+
Sbjct: 1325RRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPR 1504
Query: 435 LLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1505MLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1618
>gb|U07132.1|HSU07132 Human steroid hormone receptor Ner-I mRNA, complete cds
Length = 2010
Score = 184 bits (468), Expect = 1e-44
Identities = 118/400 (29%), Positives = 191/400 (47%), Gaps = 20/400 (5%)
Frame = +2
Query: 95 PFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLH 154
P P+ + P +KKG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ +
Sbjct: 431 PDPE-EEPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGA 604
Query: 155 PSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS----KRLAXXXXXXXXX 210
Y+C+ G C +D R +CQ+CR +KC GM VL + K++
Sbjct: 605 RRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQS 784
Query: 211 XXXXXXXLQKSIGHKPEPT--------------DEEWELIKTVTEAHVATNAQGSHWKQK 256
Q S P + E + E + K
Sbjct: 785 QSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNK 964
Query: 257 RKFLPED-IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQ 315
R F + + P+ P+ + F+HFT++ ++ +VDFAK++P F +L EDQ
Sbjct: 965 RSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQ 1144
Query: 316 IILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSL 374
I LLK +EIM L A RY+ ++E +T + ++ GL V + IF+ ++
Sbjct: 1145IALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAM 1324
Query: 375 SSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPK 434
LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P+
Sbjct: 1325RRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPR 1504
Query: 435 LLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1505MLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1618
>gb|U14534.1|HSU14534 Human orphan receptor mRNA, partial cds
Length = 1746
Score = 184 bits (468), Expect = 1e-44
Identities = 118/400 (29%), Positives = 191/400 (47%), Gaps = 20/400 (5%)
Frame = +1
Query: 95 PFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLH 154
P P+ + P +KKG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ +
Sbjct: 169 PDPE-EEPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGA 342
Query: 155 PSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS----KRLAXXXXXXXXX 210
Y+C+ G C +D R +CQ+CR +KC GM VL + K++
Sbjct: 343 RRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQS 522
Query: 211 XXXXXXXLQKSIGHKPEPT--------------DEEWELIKTVTEAHVATNAQGSHWKQK 256
Q S P + E + E + K
Sbjct: 523 QSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNK 702
Query: 257 RKFLPED-IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQ 315
R F + + P+ P+ + F+HFT++ ++ +VDFAK++P F +L EDQ
Sbjct: 703 RSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQ 882
Query: 316 IILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSL 374
I LLK +EIM L A RY+ ++E +T + ++ GL V + IF+ ++
Sbjct: 883 IALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAM 1062
Query: 375 SSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPK 434
LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P+
Sbjct: 1063RRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPR 1242
Query: 435 LLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1243MLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1356
>gb|U09419.1|MMU09419 Mus musculus retinoid X receptor interacting protein (RIP15) mRNA,
complete cds
Length = 1841
Score = 184 bits (466), Expect = 2e-44
Identities = 118/394 (29%), Positives = 190/394 (47%), Gaps = 21/394 (5%)
Frame = +2
Query: 102 PPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKY 161
P +KKG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+
Sbjct: 308 PERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRG 484
Query: 162 EGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD-------------------SKRLAX 202
G C +D R +CQ CR +KC GM VL + S+ A
Sbjct: 485 SGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQIRKKRIQKQQQQQPPPPSEPAAS 664
Query: 203 XXXXXXXXXXXXXXXLQKS-IGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLP 261
Q S G + T + +I+ + A + N + + + K P
Sbjct: 665 SSGRPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRS--FSDQPKVTP 838
Query: 262 EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 321
+G P + + F+HFT++ ++ +VDFAK++P F +L EDQI LLK
Sbjct: 839 WPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 1003
Query: 322 CCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLD 380
+EIM L A RY+ ++E +T + ++ GL V + IF+ ++ LD
Sbjct: 1004STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 1183
Query: 381 DTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVT 440
D E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P++LMK+
Sbjct: 1184DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLV 1363
Query: 441 DLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
LR + + H+ + ++++ + PPL E+++
Sbjct: 1364SLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1459
>ref|NM_009473.1| Mus musculus nuclear receptor subfamily 1, group H, member 2
(Nr1h2), mRNA
Length = 1964
Score = 184 bits (466), Expect = 2e-44
Identities = 118/394 (29%), Positives = 190/394 (47%), Gaps = 21/394 (5%)
Frame = +1
Query: 102 PPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKY 161
P +KKG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+
Sbjct: 448 PERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRG 624
Query: 162 EGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD-------------------SKRLAX 202
G C +D R +CQ CR +KC GM VL + S+ A
Sbjct: 625 SGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQIRKKRIQKQQQQQPPPPSEPAAS 804
Query: 203 XXXXXXXXXXXXXXXLQKS-IGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLP 261
Q S G + T + +I+ + A + N + + + K P
Sbjct: 805 SSGRPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRS--FSDQPKVTP 978
Query: 262 EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 321
+G P + + F+HFT++ ++ +VDFAK++P F +L EDQI LLK
Sbjct: 979 WPLGADP-----QSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 1143
Query: 322 CCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLSSFNLD 380
+EIM L A RY+ ++E +T + ++ GL V + IF+ ++ LD
Sbjct: 1144STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 1323
Query: 381 DTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVT 440
D E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P++LMK+
Sbjct: 1324DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLV 1503
Query: 441 DLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
LR + + H+ + ++++ + PPL E+++
Sbjct: 1504SLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1599
>ref|XM_046419.3| Homo sapiens nuclear receptor subfamily 1, group H, member 2
(NR1H2), mRNA
Length = 1986
Score = 183 bits (465), Expect = 3e-44
Identities = 118/399 (29%), Positives = 190/399 (47%), Gaps = 19/399 (4%)
Frame = +2
Query: 95 PFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLH 154
P P+ + P +KKG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ +
Sbjct: 410 PDPE-EEPERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGA 583
Query: 155 PSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS---KRLAXXXXXXXXXX 211
Y+C+ G C +D R +CQ+CR +KC GM VL + K+
Sbjct: 584 RRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQESQSQ 763
Query: 212 XXXXXXLQKSIGHKPEPT--------------DEEWELIKTVTEAHVATNAQGSHWKQKR 257
Q S P + E + E + KR
Sbjct: 764 SQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKR 943
Query: 258 KFLPED-IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQI 316
F + + P+ P+ + F+HFT++ ++ +VDFAK++P F +L EDQI
Sbjct: 944 SFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQI 1123
Query: 317 ILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMSLS 375
LLK +EIM L A RY+ ++E +T + ++ GL V + IF+ ++
Sbjct: 1124ALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMR 1303
Query: 376 SFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKL 435
LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P++
Sbjct: 1304RLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRM 1483
Query: 436 LMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1484LMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1594
>gb|U20389.1|RNU20389 Rattus norvegicus orphan nuclear receptor OR-1 mRNA, complete cds
Length = 1877
Score = 183 bits (464), Expect = 4e-44
Identities = 118/401 (29%), Positives = 186/401 (45%), Gaps = 28/401 (6%)
Frame = +2
Query: 102 PPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKY 161
P +KKG P L ELC VCGDKA+G+HY ++CEGCKGFFRR++ Y+C+
Sbjct: 368 PERKRKKGPAPKMLGH-ELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRG 544
Query: 162 EGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKS 221
G C +D R +CQ CR +KC GM VL + + +QK
Sbjct: 545 SGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQ--------------IRKKKIQKQ 682
Query: 222 IGHKPEPTDEEWELIKTVTEAHVATNAQGSHWK--------------------------Q 255
+P P E A T+ S
Sbjct: 683 QQQQPPPPTEPASGSSARPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCN 862
Query: 256 KRKFLPED-IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCED 314
KR F + + P+ P+ + F+HFT++ ++ +VDFAK++P F +L ED
Sbjct: 863 KRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGRED 1042
Query: 315 QIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGV-VSDAIFDLGMS 373
QI LLK +EIM L A RY+ ++E +T + ++ GL V + IF+ +
Sbjct: 1043QIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRA 1222
Query: 374 LSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWP 433
+ LDD E ALL A+ + S+DRP + R+E Q ++ A Y ++ +P
Sbjct: 1223MRRLGLDDAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFP 1402
Query: 434 KLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
++LMK+ LR + + H+ + ++++ + PPL E+++
Sbjct: 1403RMLMKLVSLRTLSSVHSEQVFALRLQ--DKKLPPLLSEIWD 1519
>dbj|AB073782.1|AB073782 Paralichthys olivaceus fRAR-1 mRNA for retinoic acid receptor
unknown type, partial cds
Length = 860
Score = 182 bits (463), Expect = 5e-44
Identities = 105/309 (33%), Positives = 162/309 (51%)
Frame = +1
Query: 127 KATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYV 186
K++GYHY CEGCKGFFRR++QK++ Y+C + CII+K+TRN+CQ CR ++C
Sbjct: 1 KSSGYHYGVSACEGCKGFFRRSVQKNM--VYTCHRDRNCIINKITRNRCQYCRLQRCFAA 174
Query: 187 GMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVAT 246
GM+ + V +D R ++ +I E T E +++ + AH T
Sbjct: 175 GMSRESVRNDRIR-----------RKGKKEAVKMTIMETYELTSELGLIVEKICRAHTET 321
Query: 247 NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPM 306
Q K+ I ++DL + F+++ T I +VV+FAK++P
Sbjct: 322 FPA---LCQLGKYTTNSSSDHRI-------QLDLGLWDKFSELATKCIIKVVEFAKRVPG 471
Query: 307 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDA 366
F L DQI LLK C++I+ LR RY PD +T+T + + +TR Q+ N G G ++D
Sbjct: 472 FTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLTRTQIHNAGFGPLTDQ 651
Query: 367 IFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKH 426
+F L +DDTE LL A+ L+S DR L ++E Q+ L A + Y R+
Sbjct: 652 VFTFAGQLLPLEMDDTESGLLSAICLVSGDRQDLEEPSKVEVLQEPLLEALKIYSRKRRP 831
Query: 427 HVTHFWPKL 435
+ H +PK+
Sbjct: 832 SMPHMFPKM 858
>gb|AF047467.1|AF047467 Sparus aurata thyroid hormone receptor alpha mRNA, partial cds
Length = 386
Score = 182 bits (463), Expect = 5e-44
Identities = 89/114 (78%), Positives = 97/114 (85%)
Frame = +1
Query: 220 KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD 279
+++ +PEP EWELI+ VTEAH TNAQGS WKQKRKFL +DIGQ P+V EG KVD
Sbjct: 43 RTLQTRPEPNTAEWELIRMVTEAHRHTNAQGSSWKQKRKFLSDDIGQGPVVPTSEGDKVD 222
Query: 280 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 333
LEAFS FTKI+TPAITRVVDFAKKLPMF ELPCEDQIILLKGCCMEIMSLRAAV
Sbjct: 223 LEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 384
>dbj|AB073781.1|AB073781 Paralichthys olivaceus fRARg mRNA for retinoic acid receptor gamma,
partial cds
Length = 857
Score = 182 bits (461), Expect = 8e-44
Identities = 104/309 (33%), Positives = 163/309 (52%)
Frame = +1
Query: 127 KATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYV 186
K++GYHY +CEGCKGFFRR+IQK++ Y+C + C I+KVTRN+CQ CR +KC V
Sbjct: 1 KSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHRDKNCQINKVTRNRCQYCRLQKCFEV 174
Query: 187 GMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVAT 246
GM+ + V +D + + + E + E EL+ V++AH T
Sbjct: 175 GMSKEAVRNDRNKKKKDVKE------------EVVLPESYELSGELEELVNKVSKAHQET 318
Query: 247 NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPM 306
Q K+ + ++DL + F+++ T I ++V+FAK+LP
Sbjct: 319 FPSLG---QLGKYTTNSSSDHRV-------QLDLGLWDKFSELSTKCIIKIVEFAKRLPG 468
Query: 307 FCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDA 366
F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+ N G G ++D
Sbjct: 469 FTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDL 648
Query: 367 IFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKH 426
+F L +DDTE LL A+ L+ DR L ++++K Q+ L A + Y R+
Sbjct: 649 VFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPQKVDKLQEPLLEALKIYARRRRP 828
Query: 427 HVTHFWPKL 435
+ H +PK+
Sbjct: 829 NKPHMFPKM 855
>dbj|AB073783.1|AB073783 Paralichthys olivaceus fRARa mRNA for retinoic acid receptor alpha,
partial cds
Length = 860
Score = 180 bits (457), Expect = 2e-43
Identities = 108/320 (33%), Positives = 166/320 (51%), Gaps = 11/320 (3%)
Frame = +1
Query: 127 KATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYV 186
K++GYHY CEGCKGFFRR+IQK++ Y+C E CII+KVTRN+CQ CR +KC+ V
Sbjct: 1 KSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHREKNCIINKVTRNRCQYCRLQKCLEV 174
Query: 187 GMATDL--VLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTD------EEWELIKT 238
GM+ + V +D + +K K E T+ + ++I
Sbjct: 175 GMSKECESVRNDRNK-------------------KKKDEKKQECTESYVLSPDTEQMIDR 297
Query: 239 VTEAHVATNAQGSHWKQKRKFLPE--DIGQAPIVNAPEGG-KVDLEAFSHFTKIITPAIT 295
V +AH T P +G+ N+ E +D++ + F+++ T I
Sbjct: 298 VRKAHKET-------------FPSLCQLGKYTTSNSSERRVSLDVDLWDKFSELSTKCII 438
Query: 296 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQL 355
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q+
Sbjct: 439 KTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 618
Query: 356 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLL 415
N G G ++D +F L +DD E LL A+ L+ DR L E+++ Q+ L
Sbjct: 619 HNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEEAEKVDVLQEPLLE 798
Query: 416 AFEHYINYRKHHVTHFWPKL 435
A + Y+ R+ H H +PK+
Sbjct: 799 ALKIYVRKRRPHKPHMFPKM 858
>emb|X62642.1|GGTHRB2 G.gallus mRNA for thyroid hormone receptor beta 2
Length = 382
Score = 179 bits (454), Expect = 5e-43
Identities = 85/121 (70%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
Frame = +2
Query: 1 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 60
MNYCM E++EV PAA SNCYMQ TDY Y+ED+ S D Q + S++IYMEQAWAVNQP
Sbjct: 20 MNYCMQEIYEVHPAAGSNCYMQSTDYCTYIEDNQGYSSCDAQVLHSNNIYMEQAWAVNQP 199
Query: 61 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKP-FPQVQSPPHSQKKGYIPSYLDKDE 119
YTCSYPGN+FKS+ SD+DMAL+Q +QP + EEKP F QVQSP +SQKKGYIPSYLDKDE
Sbjct: 200 YTCSYPGNVFKSEYSDMDMALNQYNQPEYFTEEKPTFSQVQSPSYSQKKGYIPSYLDKDE 379
Query: 120 L 120
L
Sbjct: 380 L 382
>gb|U15548.1|MMBTTHR7 Mus musculus beta 2 thyroid hormone receptor (TRbeta2) gene, exon 7
and complete cds
Length = 379
Score = 178 bits (451), Expect = 1e-42
Identities = 82/89 (92%), Positives = 84/89 (94%)
Frame = +3
Query: 387 LQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIG 446
+Q + SDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIG
Sbjct: 3 IQIPFFLPSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIG 182
Query: 447 ACHASRFLHMKVECPTELFPPLFLEVFED 475
ACHASRFLHMKVECPTELFPPLFLEVFED
Sbjct: 183 ACHASRFLHMKVECPTELFPPLFLEVFED 269
>gb|AC093927.2| Homo sapiens chromosome 3 clone RP11-81I24, complete sequence
Length = 183263
Score = 177 bits (449), Expect = 2e-42
Identities = 85/110 (77%), Positives = 93/110 (84%), Gaps = 1/110 (0%)
Frame = +1
Query: 1 MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQP 60
MNYCM E++EV PAA SNCYMQ TDY AY EDSP SG D QAVPS++IYMEQAWAVNQP
Sbjct: 134368 MNYCMQEIYEVHPAAGSNCYMQSTDYYAYFEDSPGYSGCDAQAVPSNNIYMEQAWAVNQP 134547
Query: 61 YTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKP-FPQVQSPPHSQKKG 109
YTCSYPGN+FKSKDSDLDMAL+Q SQP + EEKP F QVQSP +SQKKG
Sbjct: 134548 YTCSYPGNMFKSKDSDLDMALNQYSQPEYFTEEKPTFSQVQSPSYSQKKG 134697
Score = 176 bits (446), Expect = 4e-42
Identities = 81/84 (96%), Positives = 82/84 (97%)
Frame = +2
Query: 392 LMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHAS 451
L +DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHAS
Sbjct: 176615 LFPADRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHAS 176794
Query: 452 RFLHMKVECPTELFPPLFLEVFED 475
RFLHMKVECPTELFPPLFLEVFED
Sbjct: 176795 RFLHMKVECPTELFPPLFLEVFED 176866
Score = 168 bits (426), Expect = 9e-40
Identities = 85/87 (97%), Positives = 87/87 (99%)
Frame = +2
Query: 309 ELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIF 368
+LPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEMAVTRGQLKNGGLGVVSDAIF
Sbjct: 171989 QLPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIF 172168
Query: 369 DLGMSLSSFNLDDTEVALLQAVLLMSS 395
DLGMSLSSFNLDDTEVALLQAVLLMSS
Sbjct: 172169 DLGMSLSSFNLDDTEVALLQAVLLMSS 172249
Score = 108 bits (270), Expect = 1e-21
Identities = 47/49 (95%), Positives = 49/49 (99%)
Frame = +2
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATD 191
GFFRRTIQK+LHPSYSCKYEGKC+IDKVTRNQCQECRFKKCIYVGMATD
Sbjct: 152900 GFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATD 153046
Score = 104 bits (260), Expect = 2e-20
Identities = 52/69 (75%), Positives = 53/69 (76%)
Frame = +3
Query: 192 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 251
+VLDDSKRLA LQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS
Sbjct: 156015 VVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 156194
Query: 252 HWKQKRKFL 260
HWKQKRKFL
Sbjct: 156195 HWKQKRKFL 156221
Score = 103 bits (257), Expect = 4e-20
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 261 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 310
PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCE+
Sbjct: 166273 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEV 166422
Score = 82.4 bits (202), Expect = 8e-14
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +3
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK
Sbjct: 147231 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 147332
>emb|AJ224341.1|CCAJ4341 Ceratitis capitata mRNA for ecdysone receptor (EcR gene)
Length = 3217
Score = 177 bits (449), Expect = 2e-42
Identities = 120/383 (31%), Positives = 184/383 (47%), Gaps = 30/383 (7%)
Frame = +1
Query: 107 KKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCI 166
KKG P ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K + Y CK+ C
Sbjct: 970 KKGPAPRL--QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK--NAVYCCKFGRSCE 1137
Query: 167 IDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKP 226
+D R +CQECR KKC+ VGM + V+ +++ I K
Sbjct: 1138 MDMYMRRKCQECRMKKCLAVGMRPECVVPENQCAMKRREKKAQKEKEKQTTGNSPIICKT 1317
Query: 227 EPTDEE-WELIKTVTEAH---------VATNAQGSH----------------WKQKRKFL 260
E E EL+ +H + + S+ W Q
Sbjct: 1318 ESIKNEILELMNCEPPSHPTCPLLPDDIVAKCKASNIPPLTRNQLAVIYKLIWYQDGYEQ 1497
Query: 261 PEDIGQAPIVNAPEGGKVDLE-AFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL 319
P + I++ P+ + + +F H T+I + +V+FAK LP F ++P EDQI LL
Sbjct: 1498 PSEEDLKRIMSTPDENESPNDISFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLL 1677
Query: 320 KGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNL 379
K C E+M LR A RYD +S+++ + TR K G+ + + + S +
Sbjct: 1678 KACSSEVMMLRMARRYDHNSDSIFFANNRSYTRDAYKMAGVADNIEDLLHFCRQMYSMKV 1857
Query: 380 DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHVTHFWPKLL 436
D+ E ALL A+++ SDRPGL + +E+ Q ++ YI R F+ KLL
Sbjct: 1858 DNVEYALLTAIVIF-SDRPGLEKAQLVEEIQSYYIDTLRVYIINRHCGDSMSLVFFAKLL 2034
Query: 437 MKVTDLRMIGACHASRFLHMKVE 459
+T+LR +G +A +K++
Sbjct: 2035 SILTELRTLGNQNAEMCFSLKLK 2103
>gb|U75355.1|LCU75355 Lucilia cuprina ecdysteroid receptor (EcR) mRNA, complete cds
Length = 3336
Score = 175 bits (444), Expect = 7e-42
Identities = 121/382 (31%), Positives = 185/382 (47%), Gaps = 29/382 (7%)
Frame = +3
Query: 107 KKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCI 166
KKG P ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K + Y CK+ C
Sbjct: 1608 KKGPAPRL--QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK--NAVYCCKFGHACE 1775
Query: 167 IDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKP 226
+D R +CQECR KKC+ VGM + V+ +++ +Q S+
Sbjct: 1776 MDMYMRRKCQECRLKKCLAVGMRPECVVPENQ---CAMKRREKKAQKEKDKIQTSV-CAT 1943
Query: 227 EPTDEEWELIKTVTEAH---------VATNAQGSH----------------WKQKRKFLP 261
E E +L+ +H + Q + W Q P
Sbjct: 1944 EIKKEILDLMTCEPPSHPTCPLLPEDILAKCQARNIPPLSYNQLAVIYKLIWYQDGYEQP 2123
Query: 262 EDIGQAPIVNAPEGGKVDLEA-FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 320
+ I+++P+ + +A F H T+I + +V+FAK LP F ++P EDQI LLK
Sbjct: 2124 SEEDLKRIMSSPDENESQHDASFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLK 2303
Query: 321 GCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLD 380
C E+M LR A RYD +S+++ + TR K G+ + + + S +D
Sbjct: 2304 ACSSEVMMLRMARRYDHNSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMYSMKVD 2483
Query: 381 DTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHVTHFWPKLLM 437
+ E ALL A+++ SDRPGL E +E Q ++ YI R F+ KLL
Sbjct: 2484 NVEYALLTAIVIF-SDRPGLEEAELVEAIQSYYIDTLRIYILNRHCGDPMSLVFFAKLLS 2660
Query: 438 KVTDLRMIGACHASRFLHMKVE 459
+T+LR +G +A +K++
Sbjct: 2661 ILTELRTLGNQNAEMCFSLKLK 2726
>gb|AF325360.1|AF325360 Calliphora vicina ecdysone receptor (EcR) mRNA, complete cds
Length = 2355
Score = 174 bits (440), Expect = 2e-41
Identities = 117/379 (30%), Positives = 185/379 (47%), Gaps = 26/379 (6%)
Frame = +1
Query: 107 KKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCI 166
KKG P ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K + Y CK+ C
Sbjct: 910 KKGPAPRL--QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK--NAVYCCKFGHACE 1077
Query: 167 IDKVTRNQCQECRFKKCIYVGMATDLVLDDS------KRLAXXXXXXXXXXXXXXXXLQK 220
+D R +CQECR +KC+ VGM + V+ ++ + ++K
Sbjct: 1078 MDMYMRRKCQECRLRKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKIQTSVCATEIKK 1257
Query: 221 SI---------GHKPEPTDEEWELIKTVTEAHVATNAQGS-------HWKQKRKFLPEDI 264
I H P E +++ ++ ++ W Q P +
Sbjct: 1258 EILDLMTCEPPSHPTCPLLPE-DILAKCQARNIPPSSYNQLAVIYKLIWYQDGYEQPSEE 1434
Query: 265 GQAPIVNAPEGGKVDLE-AFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCC 323
I+++P+ + + +F H T+I + +V+FAK LP F ++P EDQI LLK C
Sbjct: 1435 DLKRIMSSPDENESQHDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACS 1614
Query: 324 MEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTE 383
E+M LR A RYD +S+++ + TR K G+ + + + S +D+ E
Sbjct: 1615 SEVMMLRMARRYDHNSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMYSMKVDNVE 1794
Query: 384 VALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHVTHFWPKLLMKVT 440
ALL A+++ SDRPGL E +E Q ++ YI R F+ KLL +T
Sbjct: 1795 YALLTAIVIF-SDRPGLEEAELVEAIQSYYIDTLRIYILNRHCGDPMSLVFFAKLLSILT 1971
Query: 441 DLRMIGACHASRFLHMKVE 459
+LR +G +A +K++
Sbjct: 1972 ELRTLGNQNAEMCFSLKLK 2028
>gb|U15547.1|MMBTTHR6 Mus musculus beta 2 thyroid hormone receptor (TRbeta2) gene, exon 6
Length = 502
Score = 172 bits (436), Expect = 6e-41
Identities = 89/98 (90%), Positives = 91/98 (92%), Gaps = 7/98 (7%)
Frame = +3
Query: 305 PMFC-------ELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKN 357
P+FC +LPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKN
Sbjct: 162 PLFCAYVPRSFQLPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKN 341
Query: 358 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 395
GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS
Sbjct: 342 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 455
>gb|L35266.1|BMOECDYREC Bombyx mori 20-hydroxy-ecdysone receptor mRNA, complete cds
Length = 2711
Score = 172 bits (435), Expect = 8e-41
Identities = 115/400 (28%), Positives = 184/400 (45%), Gaps = 31/400 (7%)
Frame = +2
Query: 106 QKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKC 165
QKKG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K + Y CK+ C
Sbjct: 764 QKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK--NAVYICKFGHAC 931
Query: 166 IIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHK 225
+D R +CQECR KKC+ VGM + V+ + + H
Sbjct: 932 EMDMYMRRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKGILLPVSTTTVEDHM 1111
Query: 226 P-----EPTDEEWELIKTVTEAHVATNAQGSH--------------------WKQKRKFL 260
P +P E I V +++ + W Q+
Sbjct: 1112 PPIMQCDPPPPEAARIHEVVPRYLSEKLMEQNRQKNIPPLSANQKSLIARLVWYQEGYEQ 1291
Query: 261 PEDIGQAPIVNAPEGGKVDLEA---FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQII 317
P D + + + D E+ F T++ + +V+FAK LP F ++ DQI
Sbjct: 1292 PSDEDLKRVTQTWQSDEEDEESDLPFRQITEMTILTVQLIVEFAKGLPGFSKISQSDQIT 1471
Query: 318 LLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSF 377
LLK E+M LR A RYD S+++ A TR + GG+ V + + + +
Sbjct: 1472 LLKASSSEVMMLRVARRYDAASDSVLFANNKAYTRDNYRQGGMAYVIEDLLHFCRCMFAM 1651
Query: 378 NLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI---NYRKHHVTHFWPK 434
+D+ ALL A+++ SDRPGL +E+ Q +L YI N + +
Sbjct: 1652 GMDNVHFALLTAIVIF-SDRPGLEQPSLVEEIQRYYLNTLRIYIINQNSASSRCAVIYGR 1828
Query: 435 LLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+L +T+LR +G +++ + +K++ PP E+++
Sbjct: 1829 ILSVLTELRTLGTQNSNMCISLKLK--NRKLPPFLEEIWD 1942
>gb|AF210733.1|AF210733 Aedes albopictus ecdysteroid receptor (EcR) mRNA, complete cds
Length = 4130
Score = 171 bits (434), Expect = 1e-40
Identities = 125/391 (31%), Positives = 185/391 (46%), Gaps = 32/391 (8%)
Frame = +3
Query: 101 SPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCK 160
S QKKG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K+ Y CK
Sbjct: 2034 SDAKKQKKG--PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNA--VYCCK 2201
Query: 161 YEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVL------------------DDSKRLAX 202
+ C +D R +CQECR KKC+ VGM + V+ D + A
Sbjct: 2202 FGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNAT 2381
Query: 203 XXXXXXXXXXXXXXXLQK-------SIGHKPEPTDEEWEL--IKTVTEAHVATNAQGSHW 253
L K +I PE +E L I +T +A + W
Sbjct: 2382 VSTTNSTYRSEILPILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAVIYK-LIW 2558
Query: 254 KQKRKFLP--EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELP 311
Q P ED+ + I + E F H T+I + +V+FAK LP F ++P
Sbjct: 2559 YQDGYEQPSEEDLKRIMIGSPNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIP 2738
Query: 312 CEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG 371
EDQI LLK C E+M LR A RYD ++++ + TR + G+ + +
Sbjct: 2739 QEDQITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFC 2918
Query: 372 MSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHV 428
+ S +D+ E ALL A+++ SDRPGL E +E Q ++ YI R
Sbjct: 2919 RQMFSLTVDNVEYALLTAIVIF-SDRPGLEQAELVEHIQSYYIDTLRIYILNRHAGDPKC 3095
Query: 429 THFWPKLLMKVTDLRMIGACHASRFLHMKVE 459
+ + KLL +T+LR +G ++ +K++
Sbjct: 3096 SVIFAKLLSILTELRTLGNQNSEMCFSLKLK 3188
>dbj|D43943.1|BMOBMECRB1 Silkworm mRNA for ecdysone receptor, complete cds
Length = 2720
Score = 170 bits (431), Expect = 2e-40
Identities = 113/397 (28%), Positives = 181/397 (45%), Gaps = 28/397 (7%)
Frame = +1
Query: 106 QKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKC 165
QKKG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K + Y CK+ C
Sbjct: 778 QKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK--NAVYICKFGHAC 945
Query: 166 IIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHK 225
+D R +CQECR KKC+ VGM + V+ + + H
Sbjct: 946 EMDMYMRRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKGILLPVSTTTVEDHM 1125
Query: 226 P-----EPTDEEWELIKTVTEAHVATNAQGSH--------------------WKQKRKFL 260
P +P E I V +++ + W Q+
Sbjct: 1126 PPIMQCDPPPPEAARIHEVVPRYLSEKLMEQNRQKNIPPLSANQKSLIARLVWYQEGYEQ 1305
Query: 261 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 320
P D + + E + F T++ + +V+FAK LP F ++ DQI LLK
Sbjct: 1306 PSDEDLKRVTQSDEEDEESDLPFRQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLK 1485
Query: 321 GCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLD 380
E+M LR A RYD S+++ A TR + G+ V + + + + +D
Sbjct: 1486 ASSSEVMMLRVARRYDAASDSVLFANNKAYTRDNYRKAGMAYVIEDLLHFCRCMFAMGMD 1665
Query: 381 DTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI---NYRKHHVTHFWPKLLM 437
+ ALL A+++ SDRPGL +E+ Q +L YI N + ++L
Sbjct: 1666 NVHFALLTAIVIF-SDRPGLEQPSLVEEIQRYYLNTLRIYIINQNSASSRCAVIYGRILS 1842
Query: 438 KVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+T+LR +G +++ + +K++ PP E+++
Sbjct: 1843 VLTELRTLGTQNSNMCISLKLK--NRKLPPFLEEIWD 1947
>gb|U02021.1|AAU02021 Aedes aegypti ecdysteroid receptor mRNA, complete cds
Length = 4158
Score = 169 bits (429), Expect = 4e-40
Identities = 124/391 (31%), Positives = 184/391 (46%), Gaps = 32/391 (8%)
Frame = +3
Query: 101 SPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCK 160
S QKKG P+ ++ELC+VCGD+ +GYHY +TCEGCKGFFRR++ K+ Y CK
Sbjct: 2031 SDAKKQKKG--PTPRQQEELCLVCGDRESGYHYNALTCEGCKGFFRRSVTKNA--VYCCK 2198
Query: 161 YEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVL------------------DDSKRLAX 202
+ C +D R +CQECR KKC+ VGM + V+ D + A
Sbjct: 2199 FGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNAT 2378
Query: 203 XXXXXXXXXXXXXXXLQK-------SIGHKPEPTDEEWEL--IKTVTEAHVATNAQGSHW 253
L K +I PE +E L I +T +A + W
Sbjct: 2379 VSTTNSTYRSEILPILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAVIYK-LIW 2555
Query: 254 KQKRKFLP--EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELP 311
Q P ED+ + I + E F H T+I + +V+FAK LP F ++P
Sbjct: 2556 YQDGYEQPSEEDLKRIMIGSPNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIP 2735
Query: 312 CEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG 371
EDQI LLK C E+M LR A RYD ++++ + TR + G+ + +
Sbjct: 2736 QEDQITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFC 2915
Query: 372 MSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHV 428
+ S +D+ E ALL A+++ SDRPGL E +E Q ++ YI R
Sbjct: 2916 RQMFSLTVDNVEYALLTAIVIF-SDRPGLEQAELVEHIQSYYIDTLRIYILNRHAGDPKC 3092
Query: 429 THFWPKLLMKVTDLRMIGACHASRFLHMKVE 459
+ + KLL +T+LR +G ++ +K++
Sbjct: 3093 SVIFAKLLSILTELRTLGNQNSEMCFSLKLK 3185
>gb|AF405205.1|AF405205 Oncorhynchus mykiss thyroid hormone receptor-beta mRNA, partial cds
Length = 255
Score = 168 bits (426), Expect = 9e-40
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +1
Query: 278 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 337
VD+EAFS FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP
Sbjct: 1 VDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 180
Query: 338 DSETLTLNGEMAVTRGQLKNGGLGV 362
+SETLTLNGEMAVTRGQLKNGGLGV
Sbjct: 181 ESETLTLNGEMAVTRGQLKNGGLGV 255
>gb|U29531.2|CFU29531 Choristoneura fumiferana ecdysteroid receptor EcR-B mRNA, complete
cds
Length = 3962
Score = 166 bits (420), Expect = 4e-39
Identities = 118/402 (29%), Positives = 192/402 (47%), Gaps = 33/402 (8%)
Frame = +1
Query: 106 QKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKC 165
QKKG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K + Y CK+ C
Sbjct: 622 QKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK--NAVYICKFGHAC 789
Query: 166 IIDKVTRNQCQECRFKKCIYVGMATDLVLDDS--------KRLAXXXXXXXXXXXXXXXX 217
+D R +CQECR KKC+ VGM + V+ ++ K+
Sbjct: 790 EMDMYMRRKCQECRLKKCLAVGMRPECVVPETQCAMKRKEKKAQKEKDKLPVSTTTVDDH 969
Query: 218 LQKSIGHKPEPTDEE--WELI-KTVTEAHVATNAQGS---------------HWKQKRKF 259
+ + +P P + E++ + +++ + TN Q + W Q
Sbjct: 970 MPPIMQCEPPPPEAARIHEVVPRFLSDKLLETNRQKNIPQLTANQQFLIARLIWYQDGYE 1149
Query: 260 LPEDIGQAPIV----NAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQ 315
P D I A + + F T++ + +V+FAK LP F ++ DQ
Sbjct: 1150 QPSDEDLKRITQTWQQADDENEESDTPFRQITEMTILTVQLIVEFAKGLPGFAKISQPDQ 1329
Query: 316 IILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLS 375
I LLK C E+M LR A RYD S+++ A TR + G+ V + + +
Sbjct: 1330 ITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMY 1509
Query: 376 SFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHVTHFW 432
S LD+ ALL AV++ SDRPGL + +E+ Q +L YI + + +
Sbjct: 1510 SMALDNIHYALLTAVVIF-SDRPGLEQPQLVEEIQRYYLNTLRIYILNQLSGSARSSVIY 1686
Query: 433 PKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
K+L +++LR +G +++ + +K++ PP E+++
Sbjct: 1687 GKILSILSELRTLGMQNSNMCISLKLK--NRKLPPFLEEIWD 1806
>gb|AF092030.2|AF092030 Choristoneura fumiferana ecdysone receptor isoform A (EcR) mRNA,
complete cds
Length = 6852
Score = 166 bits (420), Expect = 4e-39
Identities = 118/402 (29%), Positives = 192/402 (47%), Gaps = 33/402 (8%)
Frame = +3
Query: 106 QKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKC 165
QKKG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K + Y CK+ C
Sbjct: 732 QKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK--NAVYICKFGHAC 899
Query: 166 IIDKVTRNQCQECRFKKCIYVGMATDLVLDDS--------KRLAXXXXXXXXXXXXXXXX 217
+D R +CQECR KKC+ VGM + V+ ++ K+
Sbjct: 900 EMDMYMRRKCQECRLKKCLAVGMRPECVVPETQCAMKRKEKKAQKEKDKLPVSTTTVDDH 1079
Query: 218 LQKSIGHKPEPTDEE--WELI-KTVTEAHVATNAQGS---------------HWKQKRKF 259
+ + +P P + E++ + +++ + TN Q + W Q
Sbjct: 1080 MPPIMQCEPPPPEAARIHEVVPRFLSDKLLETNRQKNIPQLTANQQFLIARLIWYQDGYE 1259
Query: 260 LPEDIGQAPIV----NAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQ 315
P D I A + + F T++ + +V+FAK LP F ++ DQ
Sbjct: 1260 QPSDEDLKRITQTWQQADDENEESDTPFRQITEMTILTVQLIVEFAKGLPGFAKISQPDQ 1439
Query: 316 IILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLS 375
I LLK C E+M LR A RYD S+++ A TR + G+ V + + +
Sbjct: 1440 ITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMY 1619
Query: 376 SFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR---KHHVTHFW 432
S LD+ ALL AV++ SDRPGL + +E+ Q +L YI + + +
Sbjct: 1620 SMALDNIHYALLTAVVIF-SDRPGLEQPQLVEEIQRYYLNTLRIYILNQLSGSARSSVIY 1796
Query: 433 PKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
K+L +++LR +G +++ + +K++ PP E+++
Sbjct: 1797 GKILSILSELRTLGMQNSNMCISLKLK--NRKLPPFLEEIWD 1916
>gb|U19812.1|MSU19812 Manduca sexta ecdysone receptor homologue (MsEcR) gene, complete cds
Length = 2840
Score = 165 bits (418), Expect = 8e-39
Identities = 119/407 (29%), Positives = 191/407 (46%), Gaps = 35/407 (8%)
Frame = +1
Query: 103 PHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYE 162
P QKKG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K + Y CK+
Sbjct: 751 PRRQKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK--NAVYICKFG 918
Query: 163 GKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS--------KRLAXXXXXXXXXXXXX 214
C +D R +CQECR KKC+ VGM + V+ +S K
Sbjct: 919 HACEMDMYMRRKCQECRLKKCLAVGMRPECVVPESTCKNKRREKEAQREKDKLPVSTTTV 1098
Query: 215 XXXLQKSIGHKPEPTDE----------------EWELIKTVT--EAHVATNAQGSHWKQK 256
+ + P P + E +K VT A+ + W Q+
Sbjct: 1099 DDHMPAIMQCDPPPPEAARIHEVVPRFLTEKLMEQNRLKNVTPLSANQKSLIARLVWYQE 1278
Query: 257 RKFLPED-----IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELP 311
P + + Q + E + D+ F T++ + +V+FAK LP F ++
Sbjct: 1279 GYEQPSEEDLKRVTQTWQLEEEEEEETDM-PFRQITEMTILTVQLIVEFAKGLPGFSKIS 1455
Query: 312 CEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLG 371
DQI LLK E+M LR A RYD ++++ A TR + G+ V + +
Sbjct: 1456 QSDQITLLKASSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMSYVIEDLLHFC 1635
Query: 372 MSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH- 430
+ S ++D+ ALL A+++ SDRPGL +E+ Q +L YI +H +
Sbjct: 1636 RCMYSMSMDNVHYALLTAIVIF-SDRPGLEQPLLVEEIQRYYLKTLRVYI-LNQHSASPR 1809
Query: 431 ---FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+ K+L +T+LR +G +++ + +K++ PP E+++
Sbjct: 1810 CAVLFGKILGVLTELRTLGTQNSNMCISLKLK--NRKLPPFLEEIWD 1944
>ref|NM_005123.1| Homo sapiens nuclear receptor subfamily 1, group H, member 4
(NR1H4), mRNA
Length = 2218
Score = 165 bits (417), Expect = 1e-38
Identities = 126/445 (28%), Positives = 196/445 (43%), Gaps = 14/445 (3%)
Frame = +3
Query: 44 VPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPP 103
+ SSS Y + QP PG +++ + + ++ A +P K
Sbjct: 534 ISSSSYYSNLGFYPQQPEEWYSPG-IYELRRMPAETLYQGETEVAEMPVTK--------- 683
Query: 104 HSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEG 163
+ G + DELCVVCGD+A+GYHY +TCEGCKGFFRR+I K + Y CK G
Sbjct: 684 -KPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITK--NAVYKCKNGG 854
Query: 164 KCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD----SKRL---------AXXXXXXXXX 210
C++D R +CQECR +KC +GM + +L + SKRL
Sbjct: 855 NCVMDMYMRRKCQECRLRKCKEMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGR 1034
Query: 211 XXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIV 270
KS K E T ++ L+ + +++ N Q + K L E+
Sbjct: 1035DLRQVTSTTKSCREKTELTPDQQTLLHFIMDSY---NKQRMPQEITNKILKEEFSAE--- 1196
Query: 271 NAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLR 330
E F T++ T + +V+F KKLP F L EDQI LLKG +E M LR
Sbjct: 1197----------ENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLR 1346
Query: 331 AAVRYDPDSETLTLNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQA 389
+A ++ +G + +++N G+ +F S+ + E ALL A
Sbjct: 1347SAEIFNKKLP----SGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTA 1514
Query: 390 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 449
++++S DR + E +EK Q+ L + + + LL ++T+LR H
Sbjct: 1515IVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHH 1694
Query: 450 ASRFLHMKVECPTELFPPLFLEVFE 474
A + +V F PL E+++
Sbjct: 1695AEMLMSWRVN--DHKFTPLLCEIWD 1763
>gb|U68233.1|HSU68233 Human farnesol receptor HRR-1 (HRR-1) mRNA, complete cds
Length = 2218
Score = 165 bits (417), Expect = 1e-38
Identities = 126/445 (28%), Positives = 196/445 (43%), Gaps = 14/445 (3%)
Frame = +3
Query: 44 VPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPP 103
+ SSS Y + QP PG +++ + + ++ A +P K
Sbjct: 534 ISSSSYYSNLGFYPQQPEEWYSPG-IYELRRMPAETLYQGETEVAEMPVTK--------- 683
Query: 104 HSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEG 163
+ G + DELCVVCGD+A+GYHY +TCEGCKGFFRR+I K + Y CK G
Sbjct: 684 -KPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITK--NAVYKCKNGG 854
Query: 164 KCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD----SKRL---------AXXXXXXXXX 210
C++D R +CQECR +KC +GM + +L + SKRL
Sbjct: 855 NCVMDMYMRRKCQECRLRKCKEMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGR 1034
Query: 211 XXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIV 270
KS K E T ++ L+ + +++ N Q + K L E+
Sbjct: 1035DLRQVTSTTKSCREKTELTPDQQTLLHFIMDSY---NKQRMPQEITNKILKEEFSAE--- 1196
Query: 271 NAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLR 330
E F T++ T + +V+F KKLP F L EDQI LLKG +E M LR
Sbjct: 1197----------ENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLR 1346
Query: 331 AAVRYDPDSETLTLNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQA 389
+A ++ +G + +++N G+ +F S+ + E ALL A
Sbjct: 1347SAEIFNKKLP----SGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTA 1514
Query: 390 VLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACH 449
++++S DR + E +EK Q+ L + + + LL ++T+LR H
Sbjct: 1515IVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHH 1694
Query: 450 ASRFLHMKVECPTELFPPLFLEVFE 474
A + +V F PL E+++
Sbjct: 1695AEMLMSWRVN--DHKFTPLLCEIWD 1763
>ref|NM_005122.1| Homo sapiens nuclear receptor subfamily 1, group I, member 3
(NR1I3), mRNA
Length = 1450
Score = 162 bits (411), Expect = 5e-38
Identities = 115/350 (32%), Positives = 166/350 (46%), Gaps = 9/350 (2%)
Frame = +3
Query: 117 KDEL--CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQ 174
+DEL CVVCGD+ATGYH+ +TCEGCKGFFRRT+ KS+ P +C + G C + K R
Sbjct: 285 EDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGP--TCPFAGSCEVSKTQRRH 458
Query: 175 CQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 234
C CR +KC+ GM D++L L K E+ E
Sbjct: 459 CPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSK----------EQEE 608
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPED---IGQAPIVN-APEGGKVDLEAFSHFTKII 290
LI+T+ AH T G+ ++Q +F P I P+ AP L +HF I
Sbjct: 609 LIRTLLGAH--TRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPV-----LPLVTHFADIN 767
Query: 291 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAV 350
T + +V+ F K LP+F LP EDQI LLKG +EI + + ++ L G +
Sbjct: 768 TFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNF-LCGPLRY 944
Query: 351 TRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 409
T G V + +F +L L + E LL A+ L S DRPG+ + I++
Sbjct: 945 TIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQL 1124
Query: 410 QDSFLLAFEHYI--NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMK 457
Q+ L + YI R+ + KLL + +LR I + + H++
Sbjct: 1125QEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ 1274
>emb|Z30425.1|HSONHORE H.sapiens mRNA for orphan nuclear hormone receptor
Length = 1450
Score = 162 bits (411), Expect = 5e-38
Identities = 115/350 (32%), Positives = 166/350 (46%), Gaps = 9/350 (2%)
Frame = +3
Query: 117 KDEL--CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQ 174
+DEL CVVCGD+ATGYH+ +TCEGCKGFFRRT+ KS+ P +C + G C + K R
Sbjct: 285 EDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGP--TCPFAGSCEVSKTQRRH 458
Query: 175 CQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 234
C CR +KC+ GM D++L L K E+ E
Sbjct: 459 CPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSK----------EQEE 608
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPED---IGQAPIVN-APEGGKVDLEAFSHFTKII 290
LI+T+ AH T G+ ++Q +F P I P+ AP L +HF I
Sbjct: 609 LIRTLLGAH--TRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPV-----LPLVTHFADIN 767
Query: 291 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAV 350
T + +V+ F K LP+F LP EDQI LLKG +EI + + ++ L G +
Sbjct: 768 TFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNF-LCGPLRY 944
Query: 351 TRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 409
T G V + +F +L L + E LL A+ L S DRPG+ + I++
Sbjct: 945 TIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQL 1124
Query: 410 QDSFLLAFEHYI--NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMK 457
Q+ L + YI R+ + KLL + +LR I + + H++
Sbjct: 1125QEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ 1274
>ref|XM_042458.2| Homo sapiens nuclear receptor subfamily 1, group I, member 3
(NR1I3), mRNA
Length = 1342
Score = 162 bits (411), Expect = 5e-38
Identities = 115/350 (32%), Positives = 166/350 (46%), Gaps = 9/350 (2%)
Frame = +2
Query: 117 KDEL--CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQ 174
+DEL CVVCGD+ATGYH+ +TCEGCKGFFRRT+ KS+ P +C + G C + K R
Sbjct: 182 EDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGP--TCPFAGSCEVSKTQRRH 355
Query: 175 CQECRFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 234
C CR +KC+ GM D++L L K E+ E
Sbjct: 356 CPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSK----------EQEE 505
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPED---IGQAPIVN-APEGGKVDLEAFSHFTKII 290
LI+T+ AH T G+ ++Q +F P I P+ AP L +HF I
Sbjct: 506 LIRTLLGAH--TRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPV-----LPLVTHFADIN 664
Query: 291 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAV 350
T + +V+ F K LP+F LP EDQI LLKG +EI + + ++ L G +
Sbjct: 665 TFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNF-LCGPLRY 841
Query: 351 TRGQLKNGGLGV-VSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 409
T G V + +F +L L + E LL A+ L S DRPG+ + I++
Sbjct: 842 TIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQL 1021
Query: 410 QDSFLLAFEHYI--NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMK 457
Q+ L + YI R+ + KLL + +LR I + + H++
Sbjct: 1022QEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ 1171
>gb|AF092946.1|AF092946 Metapenaeus ensis nuclear hormone receptor E75 (E75) mRNA, complete
cds
Length = 3538
Score = 161 bits (408), Expect = 1e-37
Identities = 108/351 (30%), Positives = 173/351 (48%), Gaps = 12/351 (3%)
Frame = +2
Query: 120 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECR 179
LC VCGDKA+G+HY +CEGCKGFFRR+IQ+ + C +C I ++ RN+CQ CR
Sbjct: 467 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYR-PCTKNQQCSILRINRNRCQYCR 643
Query: 180 FKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTV 239
KKCI VGM+ D V ++++ + E ++ + +
Sbjct: 644 LKKCIAVGMSRDAVRFGRVPKREKAKILAAMQSVNAKSQERAVLAELE---DDTRVTAAI 814
Query: 240 TEAHVAT----NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKV-----DLEAFSHFTKII 290
AH+ T + + Q+ + P P + P + E F++ +
Sbjct: 815 IRAHMDTCDFTRDKVAPMLQQARTHPSYTQCPPYLACPLNPRPVPLHGQQELVQDFSEAL 994
Query: 291 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSET-LTLNGEMA 349
PAI VV+FAK+LP F +LP EDQ+ LLK E++ +R A +D + L LNG++
Sbjct: 995 LPAIRGVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLLVRLAGMFDARTNAMLCLNGQLV 1174
Query: 350 VTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 409
+ + D++FD ++S L+D E+AL AV++++ DRPGL E +E+
Sbjct: 1175RREALHTSVNARFLMDSMFDFAERVNSLALNDAELALFCAVVVLAPDRPGLRNAELVERV 1354
Query: 410 QDSFLLAFEHYINYRKHHV--THFWPKLLMKVTDLRMIGACHASRFLHMKV 458
+ + ++ KHH + LL K+ DLR + H+ + L K+
Sbjct: 1355HRRLVNCLQAVVS--KHHPENPNLQRDLLSKIPDLRTLNTLHSEKLLKYKM 1501
>emb|X75163.1|XLRNAONST X.laevis mRNA for orphan nuclear receptor of steroid/thyroid
superfamily
Length = 1638
Score = 161 bits (408), Expect = 1e-37
Identities = 105/365 (28%), Positives = 166/365 (44%), Gaps = 10/365 (2%)
Frame = +2
Query: 119 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQEC 178
++C CGD+ATGYH+ +TCEGCKGFFRR ++++L SC ++ C+I+K R CQ C
Sbjct: 347 KICRACGDRATGYHFNAMTCEGCKGFFRRAVKRNLR--LSCPFQNSCVINKSNRRHCQAC 520
Query: 179 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKT 238
R KKC+ +GM +L++ D+ +K K PT L T
Sbjct: 521 RLKKCLDIGMRKELIMSDA-----------AVEQRRALIKRKHKLTKLPPTPPGASL--T 661
Query: 239 VTEAHVATNAQGSHWKQ-------KRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIIT 291
+ H T G+H K + F P P H + ++T
Sbjct: 662 PEQQHFLTQLVGAHTKTFDFNFTFSKNFRPIRRSSDPTQEPQATSSEAFLMLPHISDLVT 841
Query: 292 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVT 351
I ++ FAK LP F L EDQI LLKG E+ +R ++ D+ T T
Sbjct: 842 YMIKGIISFAKMLPYFKSLDIEDQIALLKGSVAEVSVIRFNTVFNSDTNTWECGPFTYDT 1021
Query: 352 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQD 411
G + + + + + NL E A++ A+ + +SDRPG+ E+I+K Q+
Sbjct: 1022EDMFLAGFRQLFLEPLVRIHRMMRKLNLQSEEYAMMAALSIFASDRPGVCDWEKIQKLQE 1201
Query: 412 SFLLAFEHYINYRKHHVTH---FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 468
L + +I+ ++ +PK++ +T+LR + H+ + L + P PL
Sbjct: 1202HIALTLKDFIDSQRPPSPQNRLLYPKIMECLTELRTVNDIHSKQLLEIWDIQPDA--TPL 1375
Query: 469 FLEVF 473
EVF
Sbjct: 1376MREVF 1390
>gb|AF384555.1|AF384555 Homo sapiens farnesol receptor (NR1H4) mRNA, complete cds,
alternatively spliced
Length = 1431
Score = 161 bits (407), Expect = 1e-37
Identities = 126/450 (28%), Positives = 196/450 (43%), Gaps = 19/450 (4%)
Frame = +1
Query: 44 VPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPP 103
+ SSS Y + QP PG +++ + + ++ A +P K
Sbjct: 181 ISSSSYYSNLGFYPQQPEEWYSPG-IYELRRMPAETLYQGETEVAEMPVTK--------- 330
Query: 104 HSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEG 163
+ G + DELCVVCGD+A+GYHY +TCEGCKGFFRR+I K + Y CK G
Sbjct: 331 -KPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITK--NAVYKCKNGG 501
Query: 164 KCIIDKVTRNQCQECRFKK---------CIYVGMATDLVLDDSKRL---------AXXXX 205
C++D R +CQECR +K C+Y G+ T++ SKRL
Sbjct: 502 NCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQC-KSKRLRKNVKQHADQTVNE 678
Query: 206 XXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIG 265
KS K E T ++ L+ + +++ N Q + K L E+
Sbjct: 679 DSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSY---NKQRMPQEITNKILKEEFS 849
Query: 266 QAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCME 325
E F T++ T + +V+F KKLP F L EDQI LLKG +E
Sbjct: 850 AE-------------ENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVE 990
Query: 326 IMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEV 384
M LR+A ++ +G + +++N G+ +F S+ + E
Sbjct: 991 AMFLRSAEIFNKKLP----SGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEY 1158
Query: 385 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRM 444
ALL A++++S DR + E +EK Q+ L + + + LL ++T+LR
Sbjct: 1159ALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRT 1338
Query: 445 IGACHASRFLHMKVECPTELFPPLFLEVFE 474
HA + +V F PL E+++
Sbjct: 1339FNHHHAEMLMSWRVN--DHKFTPLLCEIWD 1422
>gb|BC015261.1|BC015261 Mus musculus, nuclear receptor subfamily 1, group H, member 4,
clone MGC:18424 IMAGE:4241705, mRNA, complete cds
Length = 1717
Score = 160 bits (406), Expect = 2e-37
Identities = 128/447 (28%), Positives = 200/447 (44%), Gaps = 16/447 (3%)
Frame = +2
Query: 44 VPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPP 103
+ SSS Y + QP PG +++ + + ++ + +P K P++ +
Sbjct: 224 ISSSSYYSNLGFYPQQPEDWYSPG-IYELRRMPAETGYQGETEVSEMPVTKK-PRMAAAS 397
Query: 104 HSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEG 163
+ KG DELCVVCGD+A+GYHY +TCEGCKGFFRR+I K + Y CK G
Sbjct: 398 AGRIKG--------DELCVVCGDRASGYHYNALTCEGCKGFFRRSITK--NAVYKCKNGG 547
Query: 164 KCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD----SKRL----------AXXXXXXXX 209
C++D R +CQECR +KC +GM + +L + SKRL
Sbjct: 548 NCVMDMYMRRKCQECRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDDSEG 727
Query: 210 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPI 269
K K E T ++ L+ + +++ N Q + K L E+
Sbjct: 728 RDLRQVTSTTKFCREKTELTADQQTLLDYIMDSY---NKQRMPQEITNKILKEEFSAE-- 892
Query: 270 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 329
E F T++ T + +V+F KKLP F L EDQI LLKG +E M L
Sbjct: 893 -----------ENFLILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL 1039
Query: 330 RAAVRYDPDSETLTLNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQ 388
R+A ++ G + +++ G+ +F S+ + E ALL
Sbjct: 1040RSAEIFNKKLPA----GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLT 1207
Query: 389 AVLLMSSDRPGLACVERIEKYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGA 447
A++++S DR + E +EK Q+ L + Y+ + HF LL ++T+LR
Sbjct: 1208AIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNH 1384
Query: 448 CHASRFLHMKVECPTELFPPLFLEVFE 474
HA + +V F PL E+++
Sbjct: 1385HHAEMLMSWRVN--DHKFTPLLCEIWD 1459
>ref|NM_009108.1| Mus musculus nuclear receptor subfamily 1, group H, member 4
(Nr1h4), mRNA
Length = 1798
Score = 160 bits (406), Expect = 2e-37
Identities = 128/447 (28%), Positives = 200/447 (44%), Gaps = 16/447 (3%)
Frame = +3
Query: 44 VPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPP 103
+ SSS Y + QP PG +++ + + ++ + +P K P++ +
Sbjct: 222 ISSSSYYSNLGFYPQQPEDWYSPG-IYELRRMPAETGYQGETEVSEMPVTKK-PRMAAAS 395
Query: 104 HSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEG 163
+ KG DELCVVCGD+A+GYHY +TCEGCKGFFRR+I K + Y CK G
Sbjct: 396 AGRIKG--------DELCVVCGDRASGYHYNALTCEGCKGFFRRSITK--NAVYKCKNGG 545
Query: 164 KCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD----SKRL----------AXXXXXXXX 209
C++D R +CQECR +KC +GM + +L + SKRL
Sbjct: 546 NCVMDMYMRRKCQECRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDDSEG 725
Query: 210 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPI 269
K K E T ++ L+ + +++ N Q + K L E+
Sbjct: 726 RDLRQVTSTTKFCREKTELTADQQTLLDYIMDSY---NKQRMPQEITNKILKEEFSAE-- 890
Query: 270 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 329
E F T++ T + +V+F KKLP F L EDQI LLKG +E M L
Sbjct: 891 -----------ENFLILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL 1037
Query: 330 RAAVRYDPDSETLTLNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQ 388
R+A ++ G + +++ G+ +F S+ + E ALL
Sbjct: 1038RSAEIFNKKLPA----GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLT 1205
Query: 389 AVLLMSSDRPGLACVERIEKYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGA 447
A++++S DR + E +EK Q+ L + Y+ + HF LL ++T+LR
Sbjct: 1206AIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNH 1382
Query: 448 CHASRFLHMKVECPTELFPPLFLEVFE 474
HA + +V F PL E+++
Sbjct: 1383HHAEMLMSWRVN--DHKFTPLLCEIWD 1457
>gb|U09416.1|MMU09416 Mus musculus retinoid X receptor interacting protein (RIP14-1No.6)
mRNA, complete cds
Length = 1798
Score = 160 bits (406), Expect = 2e-37
Identities = 128/447 (28%), Positives = 200/447 (44%), Gaps = 16/447 (3%)
Frame = +3
Query: 44 VPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPP 103
+ SSS Y + QP PG +++ + + ++ + +P K P++ +
Sbjct: 222 ISSSSYYSNLGFYPQQPEDWYSPG-IYELRRMPAETGYQGETEVSEMPVTKK-PRMAAAS 395
Query: 104 HSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEG 163
+ KG DELCVVCGD+A+GYHY +TCEGCKGFFRR+I K + Y CK G
Sbjct: 396 AGRIKG--------DELCVVCGDRASGYHYNALTCEGCKGFFRRSITK--NAVYKCKNGG 545
Query: 164 KCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD----SKRL----------AXXXXXXXX 209
C++D R +CQECR +KC +GM + +L + SKRL
Sbjct: 546 NCVMDMYMRRKCQECRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDDSEG 725
Query: 210 XXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPI 269
K K E T ++ L+ + +++ N Q + K L E+
Sbjct: 726 RDLRQVTSTTKFCREKTELTADQQTLLDYIMDSY---NKQRMPQEITNKILKEEFSAE-- 890
Query: 270 VNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSL 329
E F T++ T + +V+F KKLP F L EDQI LLKG +E M L
Sbjct: 891 -----------ENFLILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL 1037
Query: 330 RAAVRYDPDSETLTLNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQ 388
R+A ++ G + +++ G+ +F S+ + E ALL
Sbjct: 1038RSAEIFNKKLPA----GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLT 1205
Query: 389 AVLLMSSDRPGLACVERIEKYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGA 447
A++++S DR + E +EK Q+ L + Y+ + HF LL ++T+LR
Sbjct: 1206AIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKMYQPENPQHF-ACLLGRLTELRTFNH 1382
Query: 448 CHASRFLHMKVECPTELFPPLFLEVFE 474
HA + +V F PL E+++
Sbjct: 1383HHAEMLMSWRVN--DHKFTPLLCEIWD 1457
>emb|AJ002941.1|RNAJ2941 Rattus norvegicus mRNA for retinoic acid receptor alpha2, partial
Length = 924
Score = 160 bits (404), Expect = 3e-37
Identities = 101/316 (31%), Positives = 153/316 (47%), Gaps = 7/316 (2%)
Frame = +2
Query: 60 PYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKP-FPQVQSPPHSQKKGYIPSYLDKD 118
PY+ L+ + ++ S S + P P P++ P
Sbjct: 95 PYSTPLRTPLWNGSNHSIETQSSSSEEIVPSPPSPPPLPRIYKP---------------- 226
Query: 119 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQEC 178
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ C
Sbjct: 227 --CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYC 394
Query: 179 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEE 232
R +KC VGM+ + V +D + +K KPE T E
Sbjct: 395 RLQKCFEVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEV 517
Query: 233 WELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITP 292
ELI+ V +AH T Q K+ + + + +D++ + F+++ T
Sbjct: 518 GELIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTK 667
Query: 293 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 352
I + V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R
Sbjct: 668 CIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNR 847
Query: 353 GQLKNGGLGVVSDAIF 368
Q+ N G G ++D +F
Sbjct: 848 TQMHNAGFGPLTDLVF 895
>gb|AF047893.1|SSTHRB2 Salmo salar thyroid hormone receptor-beta (TR-beta) gene, exon 5
Length = 259
Score = 159 bits (403), Expect = 4e-37
Identities = 79/86 (91%), Positives = 85/86 (97%)
Frame = +1
Query: 310 LPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFD 369
LPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTLNGEMAVTRGQLKNGGLGVVSDAIFD
Sbjct: 1 LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFD 180
Query: 370 LGMSLSSFNLDDTEVALLQAVLLMSS 395
LG+SLSSF+LDD+EVALLQ V+L+SS
Sbjct: 181 LGLSLSSFHLDDSEVALLQTVILLSS 258
>emb|AJ009937.1|HSAJ9937 Homo sapiens mRNA for nuclear hormone receptor PRR2
Length = 4337
Score = 159 bits (403), Expect = 4e-37
Identities = 109/366 (29%), Positives = 173/366 (46%), Gaps = 11/366 (3%)
Frame = +1
Query: 119 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKY-EGKCIIDKVTRNQCQE 177
++C VCGDKATGYH+ +TCEGCKGFFRR ++++ C + +G C I + TR QCQ
Sbjct: 1954 QICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNAR--LRCPFRKGACEITRKTRRQCQA 2127
Query: 178 CRFKKCIYVGMATDLVLDD---SKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 234
CR +KC+ GM ++++ D +R A +Q T+E+
Sbjct: 2128 CRLRKCLESGMKNEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGL-------TEEQRM 2286
Query: 235 LIKTVTEAHVAT-NAQGSHWKQKRKFLPEDIGQAPIVN----APEGGKVDLEAFSHFTKI 289
+I+ + +A + T + SH+K R L + N A GGK H +
Sbjct: 2287 MIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADM 2466
Query: 290 ITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMA 349
T ++ FAK + F +LP EDQI LLKG E+ LR ++ ++ T G ++
Sbjct: 2467 STYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC-GRLS 2643
Query: 350 VTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 409
G ++ + + L L + E L+QA+ L S DRPG+ +++
Sbjct: 2644 YCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQL 2823
Query: 410 QDSFLLAFEHYINYRKHHVTH--FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
Q+ F + + YI + H + K++ +T+LR I A H R L ++ P P
Sbjct: 2824 QEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP--FATP 2997
Query: 468 LFLEVF 473
L E+F
Sbjct: 2998 LMQELF 3015
>ref|NM_033013.1| Homo sapiens nuclear receptor subfamily 1, group I, member 2 (NR1I2),
transcript variant 3, mRNA
Length = 4335
Score = 159 bits (402), Expect = 5e-37
Identities = 109/366 (29%), Positives = 173/366 (46%), Gaps = 11/366 (3%)
Frame = +1
Query: 119 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKY-EGKCIIDKVTRNQCQE 177
++C VCGDKATGYH+ +TCEGCKGFFRR ++++ C + +G C I + TR QCQ
Sbjct: 1954 QICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNAR--LRCPFRKGACEITRKTRRQCQA 2127
Query: 178 CRFKKCIYVGMATDLVLDD---SKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWE 234
CR +KC+ GM ++++ D +R A +Q T+E+
Sbjct: 2128 CRLRKCLESGMKKEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGL-------TEEQRM 2286
Query: 235 LIKTVTEAHVAT-NAQGSHWKQKRKFLPEDIGQAPIVN----APEGGKVDLEAFSHFTKI 289
+I+ + +A + T + SH+K R L + N A GGK H +
Sbjct: 2287 MIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADM 2466
Query: 290 ITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMA 349
T ++ FAK + F +LP EDQI LLKG E+ LR ++ ++ T G ++
Sbjct: 2467 STYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC-GRLS 2643
Query: 350 VTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKY 409
G ++ + + L L + E L+QA+ L S DRPG+ +++
Sbjct: 2644 YCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQL 2823
Query: 410 QDSFLLAFEHYINYRKHHVTH--FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPP 467
Q+ F + + YI + H + K++ +T+LR I A H R L ++ P P
Sbjct: 2824 QEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP--FATP 2997
Query: 468 LFLEVF 473
L E+F
Sbjct: 2998 LMQELF 3015
>emb|AJ002940.1|RNAJ2940 Rattus norvegicus mRNA for retinoic acid receptor alpha1, partial
Length = 908
Score = 159 bits (402), Expect = 5e-37
Identities = 92/254 (36%), Positives = 136/254 (53%), Gaps = 6/254 (2%)
Frame = +1
Query: 121 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRF 180
C VC DK++GYHY CEGCKGFFRR+IQK++ Y+C + CII+KVTRN+CQ CR
Sbjct: 211 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHRDKNCIINKVTRNRCQYCRL 384
Query: 181 KKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEP------TDEEWE 234
+KC VGM+ + V +D + +K KPE T E E
Sbjct: 385 QKCFEVGMSKESVRNDRNK-------------------KKKEAPKPECSESYTLTPEVGE 507
Query: 235 LIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI 294
LI+ V +AH T Q K+ + + + +D++ + F+++ T I
Sbjct: 508 LIEKVRKAHQETFPALC---QLGKYTTNNSSEQRV-------SLDIDLWDKFSELSTKCI 657
Query: 295 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQ 354
+ V+FAK+LP F L DQI LLK C++I+ LR RY P+ +T+T + + + R Q
Sbjct: 658 IKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQ 837
Query: 355 LKNGGLGVVSDAIF 368
+ N G G ++D +F
Sbjct: 838 MHNAGFGPLTDLVF 879
>emb|Y09009.1|HVECR H.virescens mRNA for ecdysteroid receptor
Length = 2745
Score = 159 bits (401), Expect = 7e-37
Identities = 116/403 (28%), Positives = 187/403 (45%), Gaps = 34/403 (8%)
Frame = +3
Query: 106 QKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKC 165
QKKG P+ ++ELC+VCGD+A+GYHY +TCEGCKGFFRR++ K + Y CK+ C
Sbjct: 672 QKKG--PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK--NAVYICKFGHAC 839
Query: 166 IIDKVTRNQCQECRFKKCIYVGMATDLVLDDS-------KRLAXXXXXXXXXXXXXXXXL 218
+D R +CQECR KKC+ VGM + V+ ++ ++ A
Sbjct: 840 EMDIYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQREKDKLPVSTTTVDDH 1019
Query: 219 QKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKR-KFLP---------------- 261
I P E +++ V V +Q R K +P
Sbjct: 1020 MPPIMQCDPPPPEAARILECVQHEVVPRFLNEKLMEQNRLKNVPPLTANQKSLIARLVWY 1199
Query: 262 ----EDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRV---VDFAKKLPMFCELPCED 314
E + + + + D ++ F +I I V V+FAK LP F ++ D
Sbjct: 1200 QEGYEQPSEEDLKRVTQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSD 1379
Query: 315 QIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSL 374
QI LLK C E+M LR A RYD ++++ A TR + G+ V + + +
Sbjct: 1380 QITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCM 1559
Query: 375 SSFNLDDTEVALLQAVLLMSSDRPGL---ACVERIEKYQDSFLLAFEHYINYRKHHVTHF 431
S +D+ ALL A+++ SDRPGL VE I++Y + L + N
Sbjct: 1560 YSMMMDNVHYALLTAIVIF-SDRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRGAVI 1736
Query: 432 WPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFE 474
+ ++L +T++R +G +++ + +K++ PP E+++
Sbjct: 1737 FGEILGILTEIRTLGMQNSNMCISLKLK--NRKLPPFLEEIWD 1859
>ref|NM_021745.1| Rattus norvegicus farnesoid X activated receptor (LOC60351), mRNA
Length = 2070
Score = 159 bits (401), Expect = 7e-37
Identities = 128/442 (28%), Positives = 207/442 (45%), Gaps = 11/442 (2%)
Frame = +1
Query: 44 VPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPP 103
+ SSS Y + QP PG L++ + + ++ + +P K P++ +
Sbjct: 340 ISSSSYYSNLGFYPQQPEDWYSPG-LYELRRMPTESVYQGETEVSEMPVTKK-PRMAASS 513
Query: 104 HSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEG 163
+ KG DELCVVCGD+A+GYHY +TCEGCKGFFRR+I K + Y CK G
Sbjct: 514 AGRIKG--------DELCVVCGDRASGYHYNALTCEGCKGFFRRSITK--NAVYKCKNGG 663
Query: 164 KCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD----SKRLAXXXXXXXXXXXXXXXXLQ 219
C++D R +CQ+CR +KC +GM + +L + SKRL +
Sbjct: 664 NCVMDMYMRRKCQDCRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGR 843
Query: 220 --KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGK 277
+ + + E+ EL TV + + S+ KQ+ +P++I + K
Sbjct: 844 DLRQVTSTTKLCREKTEL--TVDQQTLLDYIMDSYSKQR---MPQEITNKIL-------K 987
Query: 278 VDLEAFSHF---TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVR 334
+ A +F T++ T + +V+F K+LP F L EDQI LLKG +E M LR+A
Sbjct: 988 EEFSAEENFLILTEMATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEI 1167
Query: 335 YDPDSETLTLNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 393
++ G + +++ G+ +F S+ + E ALL A++++
Sbjct: 1168FNKKLPA----GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVIL 1335
Query: 394 SSDRPGLACVERIEKYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGACHASR 452
S DR + E +EK Q+ L + Y+ + HF LL ++T+LR HA
Sbjct: 1336SPDRQYIKDREAVEKLQEPLLDVLQKLCKIYQPENPQHF-ACLLGRLTELRTFNHHHAEM 1512
Query: 453 FLHMKVECPTELFPPLFLEVFE 474
+ +V F PL E+++
Sbjct: 1513LMSWRVN--DHKFTPLLCEIWD 1572
>gb|U18374.1|RNU18374 Rattus norvegicus farnesoid X activated receptor mRNA, complete cds
Length = 2070
Score = 159 bits (401), Expect = 7e-37
Identities = 128/442 (28%), Positives = 207/442 (45%), Gaps = 11/442 (2%)
Frame = +1
Query: 44 VPSSSIYMEQAWAVNQPYTCSYPGNLFKSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPP 103
+ SSS Y + QP PG L++ + + ++ + +P K P++ +
Sbjct: 340 ISSSSYYSNLGFYPQQPEDWYSPG-LYELRRMPTESVYQGETEVSEMPVTKK-PRMAASS 513
Query: 104 HSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEG 163
+ KG DELCVVCGD+A+GYHY +TCEGCKGFFRR+I K + Y CK G
Sbjct: 514 AGRIKG--------DELCVVCGDRASGYHYNALTCEGCKGFFRRSITK--NAVYKCKNGG 663
Query: 164 KCIIDKVTRNQCQECRFKKCIYVGMATDLVLDD----SKRLAXXXXXXXXXXXXXXXXLQ 219
C++D R +CQ+CR +KC +GM + +L + SKRL +
Sbjct: 664 NCVMDMYMRRKCQDCRLRKCREMGMLAECLLTEIQCKSKRLRKNVKQHADQTVNEDSEGR 843
Query: 220 --KSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGK 277
+ + + E+ EL TV + + S+ KQ+ +P++I + K
Sbjct: 844 DLRQVTSTTKLCREKTEL--TVDQQTLLDYIMDSYSKQR---MPQEITNKIL-------K 987
Query: 278 VDLEAFSHF---TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVR 334
+ A +F T++ T + +V+F K+LP F L EDQI LLKG +E M LR+A
Sbjct: 988 EEFSAEENFLILTEMATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEI 1167
Query: 335 YDPDSETLTLNGEMAVTRGQLKNGGLG-VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 393
++ G + +++ G+ +F S+ + E ALL A++++
Sbjct: 1168FNKKLPA----GHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVIL 1335
Query: 394 SSDRPGLACVERIEKYQDSFLLAFEHYIN-YRKHHVTHFWPKLLMKVTDLRMIGACHASR 452
S DR + E +EK Q+ L + Y+ + HF LL ++T+LR HA
Sbjct: 1336SPDRQYIKDREAVEKLQEPLLDVLQKLCKIYQPENPQHF-ACLLGRLTELRTFNHHHAEM 1512
Query: 453 FLHMKVECPTELFPPLFLEVFE 474
+ +V F PL E+++
Sbjct: 1513LMSWRVN--DHKFTPLLCEIWD 1572
>gb|M95194.1|RANTHYHOR Rana catesbeiana thyroid hormone receptor beta gene, 3' end
Length = 1261
Score = 158 bits (400), Expect = 9e-37
Identities = 73/80 (91%), Positives = 76/80 (94%)
Frame = +1
Query: 396 DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLH 455
DRPGL+ VERIEK Q+ FLLAFEHYINYRKH+V HFWPKLLMKVTDLRMIGACHASRFLH
Sbjct: 706 DRPGLSSVERIEKCQEGFLLAFEHYINYRKHNVAHFWPKLLMKVTDLRMIGACHASRFLH 885
Query: 456 MKVECPTELFPPLFLEVFED 475
MKVECPTELFPPLFLEVFED
Sbjct: 886 MKVECPTELFPPLFLEVFED 945
>emb|AL590145.2|AL590145 Zebrafish DNA sequence from clone RP71-18K17, complete sequence [Danio
rerio]
Length = 135699
Score = 156 bits (395), Expect = 4e-36
Identities = 79/87 (90%), Positives = 84/87 (95%)
Frame = +1
Query: 309 ELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIF 368
+LPCEDQIILLKGCCMEIMSLRAAVRYDP+SETLTL+GEMAV+R QLKNGGLGVVSDAIF
Sbjct: 100048 QLPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVSREQLKNGGLGVVSDAIF 100227
Query: 369 DLGMSLSSFNLDDTEVALLQAVLLMSS 395
DLG SLS FNLDD+EVALLQAVLLMSS
Sbjct: 100228 DLGKSLSQFNLDDSEVALLQAVLLMSS 100308
Score = 152 bits (385), Expect = 5e-35
Identities = 68/81 (83%), Positives = 77/81 (94%)
Frame = +3
Query: 395 SDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 454
+DR GL CVE+IEK Q+ +LLAFEHYIN+RKH+++HFWPKLLMKVT+LRMIGACHASRFL
Sbjct: 102312 TDRSGLTCVEKIEKCQEMYLLAFEHYINHRKHNISHFWPKLLMKVTNLRMIGACHASRFL 102491
Query: 455 HMKVECPTELFPPLFLEVFED 475
HMKVECPTELFPPLFLEVFED
Sbjct: 102492 HMKVECPTELFPPLFLEVFED 102554
Score = 95.9 bits (237), Expect = 7e-18
Identities = 45/67 (67%), Positives = 51/67 (75%), Gaps = 1/67 (1%)
Frame = +1
Query: 126 DKATGYHYRCITCEGC-KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCI 184
DK+ H C C +GFFRRTIQK+LHPSYSCKY+ CIIDK+TRNQCQ CRF+KCI
Sbjct: 89683 DKSVFNH*AAFFCLHCTQGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFRKCI 89862
Query: 185 YVGMATD 191
VGMA D
Sbjct: 89863 SVGMAMD 89883
Score = 77.8 bits (190), Expect = 2e-12
Identities = 31/34 (91%), Positives = 33/34 (96%)
Frame = +3
Query: 109 GYIPSYLDKDELCVVCGDKATGYHYRCITCEGCK 142
GY+PSYL+KDE CVVCGDKATGYHYRCITCEGCK
Sbjct: 89547 GYVPSYLEKDEPCVVCGDKATGYHYRCITCEGCK 89648
Score = 77.8 bits (190), Expect = 2e-12
Identities = 38/73 (52%), Positives = 47/73 (64%)
Frame = +1
Query: 192 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 251
+VLDDSKR+A + K++ ++PEPT EWELI+ VTEAH TNAQG
Sbjct: 92656 VVLDDSKRVAKRRLIEENREKRKKEEIVKTLHNRPEPTVSEWELIRMVTEAHRHTNAQGP 92835
Query: 252 HWKQKRKFLPEDI 264
HWKQKRKFL D+
Sbjct: 92836 HWKQKRKFLVSDL 92874
Score = 75.9 bits (185), Expect = 8e-12
Identities = 39/52 (75%), Positives = 43/52 (82%)
Frame = +2
Query: 259 FLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 310
F PEDIGQ+P + + KVDLEAFS FTKIITPAITRVVDFAKKLPMF E+
Sbjct: 97034 FQPEDIGQSPAPTS-DNDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEV 97186
Score = 40.4 bits (93), Expect = 0.37
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 340 ETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMS-SDRP 398
ETL L+ EM V+ QLKN LGVV +AIFDLG S + L+ + + A +L S D+P
Sbjct: 101287 ETLNLSREMGVS*EQLKNERLGVVFNAIFDLGKSPNQ-KLEVVQNLMELATMLFSVQDKP 101463
>gb|AF305201.1|AF305201 Xenopus laevis orphan nuclear receptor BXR-beta mRNA, complete cds
Length = 1790
Score = 155 bits (392), Expect = 8e-36
Identities = 101/358 (28%), Positives = 160/358 (44%), Gaps = 3/358 (0%)
Frame = +1
Query: 119 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQEC 178
++C CGD+ATGYH+ +TCEGCKGFFRR ++++L SC ++ C+I+K R CQ C
Sbjct: 376 KICRACGDRATGYHFNAMTCEGCKGFFRRAMKRNLR--LSCPFQNSCVINKNNRRHCQAC 549
Query: 179 RFKKCIYVGMATDLVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKT 238
R KKC+ +GM +L++ D L T E+ I
Sbjct: 550 RLKKCLDIGMRKELIMSDE----AVEQRRALIKRKQNLSLSPPTPPGASLTPEQQHFITE 717
Query: 239 VTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVV 298
+ EAH T ++ + F P P + H + + T + V+
Sbjct: 718 LVEAH--TKTFDFNFTFFKNFRPIRRSPDPTQDPQATSSEAFLMLPHISDLFTYMLKGVI 891
Query: 299 DFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNG 358
FAK LP F L EDQI LLKG +E+ +R ++P + T G
Sbjct: 892 SFAKMLPYFRSLAIEDQIALLKGSVLEVCVIRFNRMFNPKTNTWECGAFTYNADDMTMAG 1071
Query: 359 GLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFE 418
+ + + ++ NL+ AL+ + L SSDRPG++ E+I+ Q+ L +
Sbjct: 1072FSQQFLEPLLRIHCMMTKLNLESEAYALMATMALFSSDRPGVSDCEKIQNLQEHIALMLK 1251
Query: 419 HYINYRKHHVTH---FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 473
+I + +PK++ +T+LR I H+ + + + P PL EVF
Sbjct: 1252AFIESHRPPSPQNRLLYPKIMECLTELRTINDIHSKQLMEIWDIQPD--VTPLMREVF 1419
>emb|X55069.1|HSCERBA8 Human c-erbA-1 gene, exon 8 for thyroid hormone receptor alpha
Length = 951
Score = 155 bits (391), Expect = 1e-35
Identities = 78/91 (85%), Positives = 85/91 (92%)
Frame = +1
Query: 305 PMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVS 364
P +LPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEMAV R QLKNGGLGVVS
Sbjct: 643 PAAPQLPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKRAQLKNGGLGVVS 822
Query: 365 DAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 395
DAIF+LG SLS+FNLDDTEVALLQAVLLMS+
Sbjct: 823 DAIFELGKSLSAFNLDDTEVALLQAVLLMST 915
>emb|AL590963.10|AL590963 Mouse DNA sequence from clone RP23-395E10 on chromosome 11, complete
sequence [Mus musculus]
Length = 196722
Score = 154 bits (390), Expect = 1e-35
Identities = 78/91 (85%), Positives = 85/91 (92%)
Frame = -1
Query: 305 PMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVS 364
P +LPCEDQIILLKGCCMEIMSLRAAVRYDP+S+TLTL+GEMAV R QLKNGGLGVVS
Sbjct: 95061 PAVPQLPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVS 94882
Query: 365 DAIFDLGMSLSSFNLDDTEVALLQAVLLMSS 395
DAIF+LG SLS+FNLDDTEVALLQAVLLMS+
Sbjct: 94881 DAIFELGKSLSAFNLDDTEVALLQAVLLMST 94789
Score = 154 bits (390), Expect = 1e-35
Identities = 68/84 (80%), Positives = 79/84 (93%)
Frame = -2
Query: 392 LMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHAS 451
L+ +DR GL CV++IEK Q+++LLAFEHY+N+RKH++ HFWPKLLMKVTDLRMIGACHAS
Sbjct: 94310 LLPADRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHAS 94131
Query: 452 RFLHMKVECPTELFPPLFLEVFED 475
RFLHMKVECPTELFPPLFLEVFED
Sbjct: 94130 RFLHMKVECPTELFPPLFLEVFED 94059
Score = 91.7 bits (226), Expect = 1e-16
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = -3
Query: 143 GFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATD 191
GFFRRTIQK+LHP+YSCKY+ C+IDK+TRNQCQ CRFKKCI VGMA D
Sbjct: 97699 GFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMD 97553
Score = 86.7 bits (213), Expect = 4e-15
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = -2
Query: 261 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCEL 310
P+DIGQ+PIV+ P+G KVDLEAFS FTKIITPAITRVVDFAKKLPMF E+
Sbjct: 95654 PDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEV 95505
Score = 82.4 bits (202), Expect = 8e-14
Identities = 37/53 (69%), Positives = 40/53 (74%), Gaps = 6/53 (11%)
Frame = -3
Query: 101 SPPHSQ------KKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRR 147
+PPH+ GYIPSYLDKDE CVVCGDKATGYHYRCITCEGCK + R
Sbjct: 101695 APPHAHCLHPFPLPGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKVWMSR 101537
Score = 75.9 bits (185), Expect = 8e-12
Identities = 36/69 (52%), Positives = 45/69 (65%)
Frame = -1
Query: 192 LVLDDSKRLAXXXXXXXXXXXXXXXXLQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGS 251
+VLDDSKR+A + +S+ +PEPT EEW+LI TEAH +TNAQGS
Sbjct: 96855 VVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTNAQGS 96676
Query: 252 HWKQKRKFL 260
HWKQ+RKFL
Sbjct: 96675 HWKQRRKFL 96649
Score = 55.8 bits (133), Expect(2) = 1e-11
Identities = 25/50 (50%), Positives = 36/50 (72%)
Frame = +3
Query: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATD 191
+GFFRR+IQ+++ K E C I ++ RN+CQ+CRFKKC+ VGM+ D
Sbjct: 87228 QGFFRRSIQQNIQYKRCLKNEN-CSIVRINRNRCQQCRFKKCLSVGMSRD 87374
Score = 42.0 bits (97), Expect = 0.13
Identities = 26/79 (32%), Positives = 37/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 250 GSHWKQKRKFLPEDIGQAPIVNAPEG--GKVDLEAFSHFTKIITPAITRVVDFAKKLPMF 307
G+H P P+ P G G+ E + F+ TPA+ VV+FAK +P F
Sbjct: 88639 GAHPANMSLLTPFSS*ACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGF 88818
Query: 308 CELPCEDQIILLKGCCMEI 326
+L DQ+ LLK E+
Sbjct: 88819 RDLSQHDQVTLLKAGTFEV 88875
Score = 39.7 bits (91), Expect(2) = 1e-11
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 120 LCVVCGDKATGYHYRCITCEGCK 142
LC VCGD A+G+HY CEGCK
Sb