TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(415 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,171,752 sequences; 566,364,212 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|X55781.1|MMPAX2 M.musculus pax2 gene 769 0.0
ref|NM_003987.1| Homo sapiens paired box gene 2 (PAX2), tra... 749 0.0
ref|NM_003989.1| Homo sapiens paired box gene 2 (PAX2), tra... 748 0.0
emb|Y07617.1|MMPAX21NE M.musculus pax2-1Neu gene 712 0.0
ref|NM_000278.1| Homo sapiens paired box gene 2 (PAX2), tra... 687 0.0
gb|M89470.1|HUMPAX2A Human paired-box protein (PAX2) mRNA, ... 687 0.0
ref|NM_003990.1| Homo sapiens paired box gene 2 (PAX2), tra... 686 0.0
ref|NM_003988.1| Homo sapiens paired box gene 2 (PAX2), tra... 686 0.0
dbj|AB026496.1|AB026496 Gallus gallus mRNA for paired-box c... 671 0.0
gb|L25597.1|HUMPBXPROA Homo sapiens paired box protein mRNA... 630 0.0
emb|Y10119.1|XLHDPA4 Xenopus laevis mRNA for paired box pro... 648 0.0
emb|Y10121.1|XLHDPA10 Xenopus laevis mRNA for paired box pr... 631 e-179
gb|AF067530.1|AF067530 Danio rerio paired box protein Pax2.... 621 e-176
gb|AF067540.1|AF067540 Danio rerio paired box protein pax2.... 621 e-176
gb|AF067539.1|AF067539 Danio rerio paired box protein pax2.... 619 e-175
gb|AF067531.1|AF067531 Danio rerio paired box protein pax2.... 619 e-175
emb|X63961.1|BRPAXZFB B.rerio pax[zf-b] mRNA 619 e-175
gb|AF067534.1|AF067534 Danio rerio paired box protein pax2.... 613 e-173
gb|AF067537.1|AF067537 Danio rerio paired box protein pax2.... 613 e-173
gb|AF067538.1|AF067538 Danio rerio paired box protein pax2.... 611 e-173
gb|AF067541.1|AF067541 Danio rerio paired box protein pax2.... 611 e-173
gb|AF067536.1|AF067536 Danio rerio paired box protein pax2.... 606 e-171
gb|AF072547.1|AF072547 Danio rerio transcription factor (Pa... 602 e-170
gb|AF067532.1|AF067532 Danio rerio paired box protein pax2.... 597 e-169
emb|Z97020.1|OLZ97020 Oryzias latipes mRNA for PAX2 protein 583 e-164
emb|Y10120.1|XLHDPA7 Xenopus laevis mRNA for paired box pro... 574 e-162
emb|Y10122.1|XLPBS4 Xenopus laevis mRNA for paired box prot... 551 e-155
gb|AF067533.1|AF067533 Danio rerio paired box protein pax2.... 546 e-153
gb|AF179300.1|AF179300 Xenopus laevis Pax-2 protein (Pax-2)... 527 e-148
emb|AJ010503.1|XLA010503 Xenopus laevis mRNA for paired box... 496 e-138
gb|M96944.1|HUMBSAP Human B-cell specific transcription fac... 468 e-130
ref|NM_016734.1| Homo sapiens paired box gene 5 (B-cell lin... 468 e-130
ref|NM_008782.1| Mus musculus paired box gene 5 (Pax5), mRNA 468 e-130
gb|M97013.1|MUSBSAP Mouse B-cell specific transcription fac... 468 e-130
dbj|AB004249.1|AB004249 Gallus gallus Pax-5 mRNA, complete cds 463 e-128
ref|NM_013951.1| Homo sapiens paired box gene 8 (PAX8), tra... 428 e-118
ref|XM_096020.1| Homo sapiens paired box gene 2 (PAX2), mRNA 423 e-116
ref|XM_071372.1| Homo sapiens paired box gene 2 (PAX2), mRNA 423 e-116
gb|AF072548.1|AF072548 Danio rerio transcription factor (Pa... 390 e-106
gb|BC020526.1|BC020526 Mus musculus, paired box gene 8, clo... 390 e-106
ref|NM_011040.1| Mus musculus paired box gene 8 (Pax8), mRNA 390 e-106
emb|X57487.1|MMPAX8 M.musculus mRNA Pax8 390 e-106
emb|X83591.1|CCPAX8A C.canis Pax8a mRNA 378 e-103
gb|BC001060.1|BC001060 Homo sapiens, paired box gene 8, clo... 374 e-102
ref|NM_003466.1| Homo sapiens paired box gene 8 (PAX8), tra... 374 e-102
gb|L19606.1|HUMPAX8A Human paired box homeotic protein (PAX... 374 e-102
ref|NM_031141.1| Rattus norvegicus Pax-8 protein (Pax8), mRNA 371 e-101
emb|X94246.1|RNPAX8 R.norvegicus mRNA for Pax-8 protein 371 e-101
emb|X69699.1|HSPAX8A H.sapiens Pax8 mRNA 371 e-101
emb|AJ000668.1|XLAJ668 Xenopus laevis mRNA for paired box p... 369 e-100
emb|AJ000667.1|XLAJ667 Xenopus laevis mRNA for paired box p... 369 e-100
gb|AF411466.1|AF411466 Petromyzon marinus transcription fac... 367 e-100
gb|AF067535.1|AF067535 Danio rerio paired box protein pax2.... 364 9e-99
emb|Y10123.1|XLPBS32 Xenopus laevis mRNA for paired box pro... 354 7e-96
emb|AJ000666.1|XLAJ666 Xenopus laevis mRNA for paired box p... 344 8e-93
ref|NM_013952.1| Homo sapiens paired box gene 8 (PAX8), tra... 344 8e-93
gb|S77904.1|S77904 Pax (PAX8c)=paired box {alternatively sp... 344 8e-93
emb|X83592.1|CCPAX8G C.canis Pax8g mRNA 332 3e-89
gb|AF053762.1|AF053762 Branchiostoma floridae paired box pr... 330 1e-88
emb|AJ000669.1|XLAJ669 Xenopus laevis mRNA for paired box p... 323 2e-86
ref|NM_013953.1| Homo sapiens paired box gene 8 (PAX8), tra... 320 2e-85
gb|S77905.1|S77905 Pax (PAX8d)=paired box {alternatively sp... 320 2e-85
ref|NM_013992.1| Homo sapiens paired box gene 8 (PAX8), tra... 316 3e-84
gb|S77906.2|S77906 Pax (PAX8e)=paired box {alternatively sp... 316 3e-84
gb|AF179301.1|AF179301 Xenopus laevis Pax-8 DNA-binding tra... 310 1e-82
gb|AF072549.1|AF072549 Danio rerio transcription factor (Pa... 296 2e-78
gb|AF053763.1|AF053763 Branchiostoma floridae paired box pr... 294 9e-78
gb|AF016884.1|AF016884 Paracentrotus lividus paired box pro... 270 2e-70
gb|AF241310.1|AF241310 Acropora millepora transcription fac... 246 3e-63
emb|AJ251932.1|PMA251932 Phallusia mammillata mRNA for tran... 234 1e-59
dbj|AB006675.1|AB006675 Halocynthia roretzi HrPax-258 mRNA,... 231 9e-59
emb|AJ249563.1|PCA249563 Podocoryne carnea mRNA for paired ... 226 2e-57
gb|AF016888.1|AF016888 Drosophila melanogaster paired box p... 224 1e-56
ref|NM_079894.1| Drosophila melanogaster shaven (sv), mRNA 224 1e-56
gb|AF010256.1|AF010256 Drosophila melanogaster sparkling pr... 224 1e-56
gb|M77844.1|HUMOCLHMB H.sapiens oculorhombin (aniridia) mRN... 224 1e-56
ref|NM_000280.1| Homo sapiens paired box gene 6 (aniridia, ... 223 3e-56
gb|M93650.1|HUMPAX6AN Human paired box gene (PAX6) homologu... 223 3e-56
gb|BC011953.1|BC011953 Homo sapiens, Similar to paired box ... 223 3e-56
gb|AY047583.1| Homo sapiens paired box protein PAX6 (PAX6) ... 223 3e-56
gb|AF169415.1|AF169415 Ambystoma mexicanum paired-box trans... 223 3e-56
gb|AF169414.1|AF169414 Ambystoma mexicanum paired-box trans... 223 3e-56
emb|X70475.1|CCPAX C. coturnix mRNA for paired box and home... 222 4e-56
emb|X61389.1|BRPAXZFA B.rerio mRNA for Pax[zf-a] 222 4e-56
ref|NM_013001.1| Rattus norvegicus Paired box homeotic gene... 222 6e-56
gb|U69644.1|RNU69644 Rattus norvegicus Pax-6 mRNA, comlete cds 222 6e-56
gb|AF061252.1|AF061252 Danio rerio Pax-family transcription... 221 1e-55
gb|AF260127.1|AF260127 Cladonema californicum transcription... 219 3e-55
gb|AF260128.1|AF260128 Cladonema californicum transcription... 219 3e-55
emb|Y07548.1|AFPAX6E24 Astyanax fasciatus mRNA for PAX-6 pr... 219 5e-55
emb|Y07546.1|AFPAX6C23 Astyanax fasciatus mRNA for PAX-6 pr... 219 5e-55
gb|U96194.1|HLU96194 Hydra littoralis Pax-B mRNA, complete cds 218 8e-55
emb|AJ223443.1|BFL223443 Branchiostoma floridae Pax6 gene (... 218 1e-54
emb|AJ223442.1|BFL223442 Branchiostoma floridae Pax6 gene (... 218 1e-54
gb|U96197.1|CQU96197 Chrysaora quinquecirrha Pax-B (Pax-B) ... 217 1e-54
gb|AF154557.1|AF154557 Xenopus laevis paired domain transcr... 217 1e-54
gb|AF154555.1|AF154555 Xenopus laevis paired domain transcr... 217 1e-54
gb|AF154556.1|AF154556 Xenopus laevis paired domain transcr... 217 1e-54
gb|AF154552.1|AF154552 Xenopus laevis paired domain transcr... 216 2e-54
gb|U77532.1|XLU77532 Xenopus laevis Pax6 mRNA, complete cds 216 3e-54
emb|AJ223440.1|BFL223440 Branchiostoma floridae Pax6 gene (... 216 3e-54
gb|U64513.1|XLU64513 Xenopus laevis Xpax6 mRNA, complete cds 216 4e-54
gb|AF154553.1|AF154553 Xenopus laevis paired domain transcr... 216 4e-54
gb|U76386.1|XLU76386 Xenopus laevis paired-type homeodomain... 216 4e-54
dbj|D88741.1|D88741 Cynops pyrrhogaster mRNA for PAX6 LL, P... 216 4e-54
emb|AJ223444.1|BFL223444 Branchiostoma floridae Pax6 gene (... 216 4e-54
dbj|D88737.1|D88737 African clawed frog mRNA for Xenopus Pa... 214 9e-54
dbj|D88738.1|D88738 African clawed frog mRNA for Xenopus Pa... 214 9e-54
ref|NM_001604.2| Homo sapiens paired box gene 6 (aniridia, ... 213 2e-53
ref|NM_013627.1| Mus musculus paired box gene 6 (Pax6), mRNA 213 2e-53
emb|X63963.1|MMPAX6PBP M.musculus pax-6 mRNA for paired box... 213 2e-53
gb|BC011272.1|BC011272 Mus musculus, clone MGC:18454 IMAGE:... 213 2e-53
emb|Y19196.1|MMUY19196 Mus musculus partial Pax-6 gene for ... 213 2e-53
gb|AF169412.1|AF169412 Ambystoma mexicanum paired-box trans... 213 3e-53
emb|Y19193.1|MMUY19193 Mus musculus partial Pax-6 gene for ... 213 3e-53
gb|AF169413.1|AF169413 Ambystoma mexicanum paired-box trans... 213 3e-53
dbj|D87837.1|D87837 Gallus gallus mRNA for PAX6 protein, co... 213 3e-53
emb|Y19198.1|MMUY19198 Mus musculus partial Pax-6 gene for ... 213 3e-53
emb|AJ251933.1|PMA251933 Phallusia mammillata mRNA for tran... 213 3e-53
emb|X63183.1|BRPAX6 B.rerio pax-6 mRNA 213 3e-53
dbj|AB007462.1|AB007462 Ephydatia fluviatilis mRNA for Pax-... 212 4e-53
emb|Y19199.1|MMUY19199 Mus musculus partial Pax-6 gene for ... 212 4e-53
emb|Y19197.1|MMUY19197 Mus musculus partial Pax-6 gene for ... 211 8e-53
gb|U59830.1|LOU59830 Loligo opalescens Pax-6 mRNA, complete... 211 1e-52
emb|AJ307468.1|MMU307468 Mus musculus mRNA for paired box p... 211 1e-52
dbj|AB061220.1|AB061220 Lampetra japonica mRNA for paired b... 210 2e-52
gb|AF165886.1|AF165886 Branchiostoma floridae paired-box tr... 209 3e-52
emb|Y07547.1|AFPAX6C72 Astyanax fasciatus mRNA for PAX-6 pr... 209 4e-52
ref|NM_068112.1| paired box transcription factor 208 8e-52
gb|U67887.1|XLU67887 Xenopus laevis XLPAX6 (Pax6) mRNA, com... 207 1e-51
gb|AF411465.1|AF411465 Petromyzon marinus transcription fac... 207 2e-51
ref|NM_079899.1| Drosophila melanogaster twin of eyeless (t... 207 2e-51
gb|AF134350.1|AF134350 Drosophila melanogaster transcriptio... 207 2e-51
gb|BC008826.1|BC008826 Homo sapiens, paired box gene 3 (Waa... 207 2e-51
gb|AY051487.1| Drosophila melanogaster GH14454 full length ... 207 2e-51
gb|AF154554.1|AF154554 Xenopus laevis paired domain transcr... 206 3e-51
ref|NM_077357.1| 'Paired box' domain, homeobox protein (pai... 205 5e-51
gb|U31537.1|CEU31537 Caenorhabditis elegans variable abnorm... 205 5e-51
gb|AF053459.2|AMPAXC1 Acropora millepora PaxC transcription... 205 7e-51
gb|AF014366.1|AF014366 Danio rerio transcription factor PAX... 204 9e-51
gb|AF254422.2|AF254422 Mus musculus paired box transcriptio... 204 9e-51
gb|AF002702.1|AF002702 Caenorhabditis elegans PAX protein (... 203 2e-50
ref|NM_069435.1| Human paired box protein like 203 2e-50
gb|AF000673.1|AF000673 Coturnix coturnix paired-box transcr... 203 3e-50
gb|AF016885.1|AF016885 Paracentrotus lividus paired box pro... 203 3e-50
gb|U96196.1|CQU96196 Chrysaora quinquecirrha Pax-A2 (Pax-A2... 202 4e-50
gb|U96195.1|CQU96195 Chrysaora quinquecirrha Pax-A1 (Pax-A1... 202 4e-50
ref|NM_013945.1| Homo sapiens paired box gene 7 (PAX7), tra... 202 4e-50
ref|NM_008781.1| Mus musculus paired box gene 3 (Pax3), mRNA 202 5e-50
emb|X59358.1|MMPAX3R Mouse Pax-3 gene for a DNA binding pro... 202 5e-50
gb|AF016886.1|AF016886 Strongylocentrotus purpuratus paired... 202 5e-50
gb|U02368.1|HSU02368 Human PAX3/forkhead transcription fact... 202 5e-50
gb|AF178854.1|AF178854 Synthetic construct Pax3-forkhead fu... 202 5e-50
dbj|AK014337.1|AK014337 Mus musculus 14, 17 days embryo hea... 202 5e-50
dbj|D87838.1|D87838 Gallus gallus mRNA for PAX7 protein, co... 202 6e-50
dbj|AB017632.1|AB017632 Dugesia japonica mRNA for DjPax-6, ... 202 6e-50
dbj|AK012493.1|AK012493 Mus musculus 11 days embryo whole b... 202 6e-50
ref|NM_079889.1| Drosophila melanogaster eyeless (ey), mRNA 201 8e-50
emb|X79493.1|DMEYEL29 D.melanogaster ey mRNA (exons 2-9) 201 8e-50
gb|AF053458.2|AF053458 Acropora millepora transcription fac... 201 1e-49
gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome ... 200 2e-49
gb|AE003634.1|AE003634 Drosophila melanogaster genomic scaf... 200 2e-49
gb|M14548.1|DROPRD D.melanogaster paired gene (prd) encodin... 200 2e-49
ref|NM_078832.1| Drosophila melanogaster paired (prd), mRNA 200 2e-49
gb|AY059447.1| Drosophila melanogaster GH22686 full length ... 200 2e-49
gb|U96193.1|HLU96193 Hydra littoralis Pax-A mRNA, complete cds 200 2e-49
emb|AJ000938.1|OLJ000938 Oryzias latipes, Pax6 gene 200 2e-49
emb|Y09975.1|PMPAX6 P.mammillata mRNA for Pax-6 199 5e-49
emb|Z35141.1|HSPAX7GE H.sapiens Pax-7 gene for transcriptio... 197 1e-48
ref|NM_002584.1| Homo sapiens paired box gene 7 (PAX7), tra... 197 1e-48
emb|X96743.1|HSPAX7M H.sapiens mRNA for paired box containi... 197 1e-48
emb|X95594.1|LSPAX6GEN L.sanguineus pax6 gene 197 1e-48
gb|AC007582.7| Drosophila melanogaster, chromosome 2R, regi... 196 3e-48
gb|AE003466.1|AE003466 Drosophila melanogaster genomic scaf... 196 3e-48
gb|U20792.1|MMU20792 Mus musculus Pax7 mRNA, partial cds 196 3e-48
ref|NM_079139.1| Drosophila melanogaster gooseberry (gsb), ... 196 3e-48
emb|X16992.1|DMPOXMESO D.melanogaster DNA for paired domain... 196 3e-48
gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome ... 195 7e-48
emb|Y19195.1|MMUY19195 Mus musculus partial Pax-6 gene for ... 195 7e-48
gb|AE003678.2|AE003678 Drosophila melanogaster genomic scaf... 195 7e-48
ref|NM_079552.1| Drosophila melanogaster Paired box mesoder... 195 7e-48
gb|U14621.1|PLU14621 Paracentrotus lividus Pax-6 (suPax-6) ... 194 1e-47
emb|AJ292077.1|MMU292077 Mus musculus partial mRNA for pair... 159 1e-47
gb|U73855.1|BTU73855 Bos taurus Pax6 mRNA, partial cds 194 2e-47
emb|AJ223441.1|BFL223441 Branchiostoma floridae Pax6 gene (... 192 4e-47
gb|U20167.1|BFU20167 Branchiostoma floridae paired box tran... 192 6e-47
gb|AF014370.1|AF014370 Danio rerio transcription factor PAX... 192 6e-47
gb|AF014369.1|AF014369 Danio rerio transcription factor PAX... 192 6e-47
gb|AF014368.1|AF014368 Danio rerio transcription factor PAX... 192 6e-47
gb|U22046.1|GGU22046 Gallus gallus Pax-1 (GPX-1) gene, part... 192 6e-47
emb|AL035562.14|HS1065O2 Human DNA sequence from clone RP5-... 191 8e-47
gb|AC087416.16|AC087416 Mus musculus clone rp23-224l16 stra... 191 8e-47
emb|AJ133503.1|MMU133503 Mus musculus pax1 gene, exons 1 an... 191 8e-47
gb|AF285175.1|AF285175 Mus musculus PAX1 gene, complete cds 191 8e-47
emb|X15044.1|HSHUP48 Homo sapiens HuP48 gene paired domain 191 8e-47
gb|AF014367.1|AF014367 Danio rerio transcription factor PAX... 191 1e-46
ref|NM_008780.1| Mus musculus paired box gene 1 (Pax1), mRNA 191 1e-46
gb|M69222.1|MUSPAX1A Mouse Pax-1 protein (Pax-1) mRNA, comp... 191 1e-46
ref|NM_006192.1| Homo sapiens paired box gene 1 (PAX1), mRNA 189 3e-46
ref|NM_013942.1| Homo sapiens paired box gene 3 (Waardenbur... 189 3e-46
gb|S69370.1|S69370 PAX3B=transcription factor {alternativel... 189 3e-46
ref|NM_000438.2| Homo sapiens paired box gene 3 (Waardenbur... 189 3e-46
gb|S69369.1|S69369 PAX3A=transcription factor [human, adult... 189 3e-46
emb|AL079303.3|CNS00M8O Human chromosome 14 DNA sequence BA... 189 3e-46
dbj|AB039660.1|AB039660 Lampetra japonica Pax-9 mRNA for pa... 189 4e-46
gb|AY071593.1| Drosophila melanogaster RE64348 full length ... 189 4e-46
dbj|AB020763.1|AB020763 Ptychodera flava mRNA for Pax19, co... 189 5e-46
gb|M20978.1|MUSHBPAXA Mouse Pax 1 homeo box DNA region, par... 189 5e-46
gb|AF443223.1|AF443223 Mus musculus PAX6 mRNA, partial cds,... 188 7e-46
dbj|AB021138.1|AB021138 Halocynthia roretzi Pax19 related m... 188 9e-46
dbj|AB021141.1|AB021141 Halocynthia roretzi Pax19 related m... 188 9e-46
dbj|AB021139.1|AB021139 Halocynthia roretzi Pax19 related m... 188 9e-46
dbj|AB021142.1|AB021142 Halocynthia roretzi Pax19 related m... 188 9e-46
dbj|AB021140.1|AB021140 Halocynthia roretzi Pax19 related m... 188 9e-46
dbj|AB021143.1|AB021143 Halocynthia roretzi Pax19 related m... 188 9e-46
emb|AJ238974.1|BLA238974 Branchiostoma lanceolatum partial ... 187 2e-45
dbj|AB020762.1|AB020762 Ciona intestinalis mRNA for Pax19, ... 187 2e-45
emb|AJ010498.1|GTI010498 Girardia tigrina mRNA for DtPax-6 ... 187 2e-45
emb|AJ238381.1|HSA238381 Homo sapiens pax9 gene, exons 1-2 ... 186 3e-45
gb|BC006930.1|BC006930 Mus musculus, paired box gene 9, clo... 186 3e-45
ref|NM_006194.1| Homo sapiens paired box gene 9 (PAX9), mRNA 186 3e-45
gb|L09745.1|HUMPAX9 Homo sapiens paired-box containing (PAX... 186 3e-45
emb|X92652.1|CHPAX9 G.domesticus mRNA for ChPax9 protein 186 3e-45
gb|BC005794.1|BC005794 Mus musculus, paired box gene 9, clo... 186 3e-45
gb|BC001159.1|BC001159 Homo sapiens, paired box gene 9, clo... 186 3e-45
emb|X82443.1|GGPAX9 Gallus gallus Pax-9 gene 186 3e-45
ref|NM_011041.1| Mus musculus paired box gene 9 (Pax9), mRNA 186 3e-45
emb|X84000.1|MMRNAPAX9 M.musculus mRNA for Pax9 186 3e-45
gb|U40932.1|DRU40932 Danio rerio transcription factor Pax9b... 186 3e-45
emb|AJ311310.1|DJA311310 Dugesia japonica partial mRNA for ... 186 3e-45
gb|U40931.1|DRU40931 Danio rerio transcription factor Pax9a... 186 3e-45
dbj|AB007461.1|AB007461 Hydra magnipapillata mRNA for Pax-2... 186 4e-45
emb|X92850.1|HSRNAPAX9 H.sapiens mRNA for Pax9 protein 183 2e-44
gb|AF266754.1|AF266754S1 Takifugu rubripes Pax9 (pax9) gene... 182 4e-44
dbj|D84254.1|D84254 Halocynthia roretzi mRNA for Pax-37, co... 182 5e-44
gb|M86927.1|DROPOXNUP Fruitfly pox neuro protein (pox neuro... 181 1e-43
emb|X58917.1|DMPOXNEUO D.melanogaster DNA fragment for pair... 181 1e-43
gb|AF039402.1|AF039402 Gallus gallus paired box protein (Pa... 181 1e-43
ref|NM_057338.1| Drosophila melanogaster Paired box neural ... 179 5e-43
gb|M14944.1|DROPRD91 D.melanogaster paired mRNA clone BSH9,... 176 3e-42
gb|AF080573.1|AF080573 Homo sapiens B-cell specific transcr... 176 5e-42
gb|AF241311.1|AF241311 Acropora millepora transcription fac... 174 2e-41
dbj|AB007460.1|AB007460 Hydra magnipapillata mRNA for pox n... 169 6e-40
ref|NM_072719.1| DNA-binding transcription factor 169 6e-40
dbj|AB010557.1|AB010557 Mus musculus mRNA for Pax4, complet... 168 7e-40
dbj|AB008912.1|AB008912 Mus musculus mRNA for Pax-4, comple... 168 7e-40
gb|AF031150.1|AF031150 Mus musculus paired-box transcriptio... 168 7e-40
dbj|AB010558.1|AB010558 Mus musculus mRNA for Pax4, complet... 168 7e-40
gb|AF145233.1|AF145233 Mus musculus transcription factor PA... 168 7e-40
gb|AF053101.1|AF053101 Rattus norvegicus Pax4b mRNA, comple... 168 1e-39
gb|M14943.1|DROPRD42 D.melanogaster paired mRNA clone BSH4,... 168 1e-39
ref|NM_031799.1| Rattus norvegicus paired box gene 4 (Pax4)... 168 1e-39
gb|AF053100.1|AF053100 Rattus norvegicus Pax4a mRNA, comple... 168 1e-39
gb|AF104231.1|AF104231 Mus musculus paired-homeodomain tran... 168 1e-39
gb|AF053103.1|AF053103 Rattus norvegicus Pax4d mRNA, comple... 168 1e-39
gb|AF053102.1|AF053102 Rattus norvegicus Pax4c mRNA, comple... 168 1e-39
gb|AF198155.1|AF198155 Rattus norvegicus Pax4a mRNA, comple... 167 1e-39
gb|AF198156.1|AF198156 Rattus norvegicus Pax4c mRNA, comple... 167 1e-39
dbj|AB008913.1|AB008913 Homo sapiens mRNA for Pax-4, comple... 167 2e-39
ref|NM_006193.1| Homo sapiens paired box gene 4 (PAX4), mRNA 164 1e-38
gb|AF043978.1|AF043978 Homo sapiens paired-box transcriptio... 164 1e-38
gb|AF118835.1|AF118835 Ilyanassa obsoleta Pax2/5/8 protein ... 160 3e-37
gb|U53336.1| Caenorhabditis elegans cosmid K07C11, complete... 120 2e-35
gb|M77842.1|MUSSEYA Mus musculus oculorhombin (Sey) mRNA, c... 151 9e-35
ref|XM_004974.3| Homo sapiens paired box gene 4 (PAX4), mRNA 149 4e-34
gb|AF231946.1|AF231946 Haliotis asinina transcription facto... 149 6e-34
emb|AJ323210.1|HSA323210 Homo sapiens genomic sequence surr... 144 2e-32
gb|AY040535.1| Schistocerca americana pairberry 1 transcrip... 143 3e-32
gb|AF029168.1|AF029168 Ateles paniscus chamek paired box ho... 142 6e-32
gb|AY040536.1| Schistocerca americana pairberry 2 transcrip... 142 7e-32
gb|AF072556.1|AF072556 Fugu rubripes transcription factor (... 129 3e-31
emb|X82442.1|GGPAX1 G.gallus Pax-1 gene 137 2e-30
emb|X73037.1|MMPAX9 M.musculus Pax-9 gene 137 2e-30
ref|NM_063788.1| 'Paired box' domain, homeobox protein (pai... 135 5e-30
gb|AF118836.1|AF118836 Ilyanassa obsoleta Pax6 protein mRNA... 135 9e-30
gb|AF433640.1| Takifugu rubripes Pax2.1 protein gene, exons... 133 3e-29
gb|AF433638.1| Mus musculus Pax2 protein gene, exons 1 and ... 133 3e-29
gb|L09747.1|HUMPAX203 Homo sapiens paired-box protein (PAX2... 133 3e-29
gb|U45247.1|HSPAXTWO03 Human paired-box protein PAX2 (PAX2)... 133 3e-29
emb|AL161781.12|AL161781 Human DNA sequence from clone RP11... 132 5e-29
gb|AF016882.1|AF016882 Paracentrotus lividus transcription ... 132 8e-29
emb|Y09584.1|MMPAX4GEN M.musculus Pax-4 mRNA, partial 131 1e-28
gb|AC016683.7|AC016683 Homo sapiens BAC clone RP11-65I12 fr... 127 2e-27
emb|X99594.1|MMPAX84 M.musculus Pax-8 gene, exon 4 127 2e-27
gb|AC084043.4|AC084043 Mus musculus 1 BAC RP23-265D16 (Rosw... 126 3e-27
gb|AF016887.1|AF016887 Paracentrotus lividus paired box pro... 126 3e-27
gb|AF179634.1|AF179634 Equus caballus paired box homeotic g... 126 4e-27
gb|AF072550.1|FRPAX1 Fugu rubripes transcription factor (Pa... 125 6e-27
gb|AC010980.8| Homo sapiens BAC clone RP11-384O8 from 2, co... 125 9e-27
emb|X15042.1|HSHUP1A H.sapiens PAX7 gene, exon 2 125 9e-27
emb|X15043.1|HSHUP2A Human HuP2 gene paired domain exon (an... 125 9e-27
emb|AL021528.1|HS394P21 Homo sapiens DNA sequence from clon... 125 9e-27
emb|Z83307.1|HSA1280 Human DNA sequence from cosmid A1280, ... 124 2e-26
gb|AF231947.1|AF231947 Haliotis asinina pax-6 mRNA, partial... 123 4e-26
gb|AY028904.1| Girardia tigrina Pax6A mRNA, partial cds 122 5e-26
ref|NM_079317.1| Drosophila melanogaster twin of eyg (toe),... 121 1e-25
emb|AL021531.1|FR151J19 Fugu rubripes cosmid 151J19 coverin... 121 1e-25
gb|U45251.1|HSPAXTWO07 Human paired-box protein PAX2 (PAX2)... 120 2e-25
emb|AL138762.20|AL138762 Human DNA sequence from clone RP11... 120 2e-25
gb|U59628.1|HSU59628 Human PAX-9 mRNA, partial cds 118 1e-24
gb|AY069177.1| Drosophila melanogaster GH22493 full length ... 116 3e-24
gb|U45246.1|HSPAXTWO02 Human paired-box protein PAX2 (PAX2)... 116 4e-24
gb|AF189154.1|AF189154 Herdmania curvata paired box protein... 116 4e-24
gb|L09746.1|HUMPAX202 Homo sapiens paired-box protein (PAX2... 116 4e-24
ref|NM_079318.1| Drosophila melanogaster eyegone (eyg), mRNA 114 1e-23
gb|AF091739.1|AF091739 Drosophila melanogaster Eyegone (eyg... 114 1e-23
gb|AE003846.2|AE003846 Drosophila melanogaster genomic scaf... 112 6e-23
gb|AC010577.4| Drosophila melanogaster, chromosome 4, regio... 112 6e-23
gb|AE003809.2|AE003809 Drosophila melanogaster genomic scaf... 112 8e-23
gb|AC007579.4|AC007579 Drosophila melanogaster, chromosome ... 112 8e-23
gb|AC099024.1| Drosophila melanogaster, chromosome 2R, regi... 112 8e-23
gb|AC007122.1|AC007122 Drosophila melanogaster, chromosome ... 112 8e-23
ref|NG_000124.1| Drosophila melanogaster Paired box neural ... 112 8e-23
emb|X99593.1|MMPAX83 M.musculus Pax-8 gene, exon 3 110 2e-22
gb|S61511.1|S61511 PAX3=HuP2 {exon 2} [human, Genomic Mutan... 92 2e-20
gb|AC000359.1|HSAC000359 Human cosmid g1572c264, complete s... 103 4e-20
gb|AC073934.1|AC073934 Human Chromosome 7 clone SCb-354C16,... 103 4e-20
gb|AF142321.1|AF142321 Mus musculus transcription factor PA... 102 5e-20
emb|Z70718.1|CEC04G2 Caenorhabditis elegans cosmid C04G2, c... 100 3e-19
gb|AC010838.11| Drosophila melanogaster, chromosome 4, regi... 97 4e-18
gb|AC099309.1| Drosophila melanogaster, chromosome 4, regio... 96 6e-18
gb|AE003843.2|AE003843 Drosophila melanogaster genomic scaf... 96 6e-18
gb|AC010576.16| Drosophila melanogaster, chromosome 4, regi... 96 6e-18
gb|AF016883.1|AF016883 Paracentrotus lividus transcription ... 94 3e-17
gb|AE003541.2|AE003541 Drosophila melanogaster genomic scaf... 76 6e-17
gb|AC091223.2| Drosophila melanogaster 3L BAC RP98-48G6 (Ro... 76 6e-17
gb|AC093438.1| Drosophila melanogaster 3L BAC RP98-26C20 (R... 76 6e-17
ref|NM_075995.1| paired box protein 91 2e-16
gb|U45252.1|HSPAXTWO08 Human paired-box protein PAX2 (PAX2)... 91 2e-16
dbj|AB017150.1|AB017150 Oryzias latipes Pax-3 mRNA, partial... 89 7e-16
emb|Z49937.1|CEF14F3 Caenorhabditis elegans cosmid F14F3, c... 84 1e-15
emb|Z48582.1|CEF27E5 Caenorhabditis elegans cosmid F27E5, c... 88 2e-15
gb|AY038984.1| Bos taurus PAX2 (PAX2) gene, partial cds 86 6e-15
gb|U33755.1|NVU33755 Notophthalmus viridescens paired-box p... 84 2e-14
gb|U73622.1|XLU73622 Xenopus laevis HD1 paired box protein ... 84 2e-14
emb|AJ010504.1|XLA010504 Xenopus laevis mRNA for paired box... 84 3e-14
gb|U50072.1| Caenorhabditis elegans cosmid K06B9, complete ... 76 6e-14
ref|NM_063715.1| 'Paired box' domain, Homeobox domain 81 2e-13
gb|AF457142.1|AF457142 Mus musculus Pax6 protein isoform mR... 81 2e-13
gb|U45253.1|HSPAXTWO09 Human paired-box protein PAX2 (PAX2)... 77 2e-12
gb|AF027769.1|AF027769 Xenopus laevis paired-box protein Pa... 76 5e-12
gb|S74393.1|S74393 Pax-6 [rats, small eye rSey, mRNA Partia... 75 1e-11
emb|AJ131630.1|DME131630 Drosophila melanogaster eyeless ge... 74 3e-11
gb|U73621.1|BTU73621 Bos taurus paired box protein (pax-6) ... 72 7e-11
emb|AL450267.10|AL450267 Human DNA sequence from clone RP11... 69 1e-09
gb|AF072553.1|FRPAX4 Fugu rubripes transcription factor (Pa... 67 2e-09
gb|U45248.1|HSPAXTWO04 Human paired-box protein PAX2 (PAX2)... 65 9e-09
dbj|AK023855.1|AK023855 Homo sapiens cDNA FLJ13793 fis, clo... 64 2e-08
ref|NM_011037.1| Mus musculus paired box gene 2 (Pax2), mRNA 64 2e-08
gb|AF304868.1|AF304868 Mus musculus PAX4 (Pax4) gene, exons... 64 3e-08
emb|X15250.1|HSHUP1B Human HuP1 gene paired domain exon 62 7e-08
gb|U45254.1|HSPAXTWO10 Human paired-box protein PAX2 (PAX2)... 62 7e-08
emb|X15252.1|HSHUP2B Human HuP2 gene paired domain 61 2e-07
gb|U45249.1|HSPAXTWO05 Human paired-box protein PAX2 (PAX2)... 59 8e-07
emb|X99597.1|MMPAX810 M.musculus Pax-8 gene, exon 10 57 2e-06
gb|AF098329.1|AF098329 Drosophila virilis eyeless protein g... 56 7e-06
emb|X99595.1|MMPAX567 M.musculus Pax-8 gene, exons 5,6 & 7 56 7e-06
emb|AJ329483.1|HSA329483 Homo sapiens genomic sequence surr... 55 9e-06
ref|NM_069605.1| paired box protein like 55 9e-06
gb|U45250.1|HSPAXTWO06 Human paired-box protein PAX2 (PAX2)... 54 3e-05
ref|NM_063132.1| Paired box protein 53 6e-05
emb|Z95623.1|CEY53C12C Caenorhabditis elegans cosmid Y53C12... 53 6e-05
gb|AF072554.1|FRPAX5 Fugu rubripes transcription factor (Pa... 50 5e-04
emb|AL160011.35|AL160011 Human DNA sequence from clone RP11... 49 7e-04
emb|Z54235.1|CEC09G9 Caenorhabditis elegans cosmid C09G9, c... 49 9e-04
ref|NM_069139.1| 'Paired box' domain 49 9e-04
gb|AC012591.8| Homo sapiens BAC clone RP11-296A19 from 2, c... 45 0.016
emb|Z29972.1|HSGPAX35 H.sapiens Pax-3 gene (exon 5) 45 0.016
gb|U12262.1|HSPAXIII3 Human paired box homeotic protein (PA... 45 0.016
emb|X99598.1|MMPAX811 M.musculus Pax-8 gene, exons 11 & 12 44 0.021
gb|AF072552.1|FRPAX3 Fugu rubripes transcription factor (Pa... 44 0.036
gb|U23518.1| Caenorhabditis elegans cosmid F21D12, complete... 43 0.047
gb|S70304.1|S70304 PAX6=paired box and homeobox gene {trans... 42 0.080
gb|AF457141.1|AF457141 Mus musculus Pax6 paired-less isofor... 42 0.080
emb|X99596.1|MMPAX89 M.musculus Pax-8 gene, exons 8 & 9 42 0.080
dbj|AP003009.2|AP003009 Mesorhizobium loti DNA, complete ge... 42 0.10
gb|L07483.1|HUMPBH3B Homo sapiens paired-box protein (PAX3)... 42 0.10
gb|AF001907.2|AF001907 Danio rerio retinal homeobox protein... 42 0.14
gb|AY064175.1| Mus musculus Pax6 paired-less isoform mRNA, ... 42 0.14
gb|M14941.1|DROPRD41 D.melanogaster PRD mRNA clone BSH4, ho... 41 0.23
ref|XM_060970.1| Homo sapiens similar to HOMEOBOX PROTEIN D... 41 0.23
ref|NM_077358.1| Caenorhabditis elegans 40 0.30
gb|AY038071.1| Homo sapiens aristaless-related homeobox pro... 40 0.30
gb|AF004590.1|AF004590 Helobdella triserialis Lox22-otx gen... 40 0.40
emb|AJ243583.1|HCO243583 Haemonchus contortus transposable ... 40 0.40
gb|U02308.1|HSU02308 Human PAX-3-FKHR gene fusion mRNA, par... 40 0.40
ref|XM_093237.1| Homo sapiens similar to Arx homeodomain pr... 40 0.40
emb|AJ298300.1|OLA298300 Oryzias latipes mRNA for Rx3 protein 40 0.40
gb|U02309.1|HSU02309 Human PAX-3 mRNA, partial cds 40 0.40
gb|U29184.1|CEU29184 Caenorhabditis elegans (mab-18) mRNA, ... 40 0.52
ref|NM_007492.1| Mus musculus aristaless related homeobox g... 40 0.52
dbj|AB006103.1|AB006103 Mus musculus mRNA for Arx homeoprot... 40 0.52
gb|U29145.1|CEU29145 Caenorhabditis elegans (mab-18) mRNA, ... 40 0.52
gb|AY057067.1| Ctenophorus ornatus paired box transcription... 40 0.52
dbj|AB006104.1|AB006104 Danio rerio mRNA for Arx homeoprote... 39 0.68
gb|AF054504.1|AF054504 Mus musculus membrane glycoprotein (... 39 0.68
dbj|AB002408.1|AB002408 Oryzias sp. mRNA for mdkPax-6, part... 39 0.68
gb|AC002504.1|AC002504 Human Xp22 PAC RPCI1-258N20, complet... 39 0.68
emb|Z97200.1|HS79C4 Homo sapiens DNA sequence from PAC 79C4... 39 0.88
ref|NM_057678.1| Drosophila melanogaster reversed polarity ... 39 0.88
dbj|AB026671.1|AB026670S2 Mus musculus gene for Arx homeodo... 39 0.88
emb|AL590369.18|AL590369 Human DNA sequence from clone RP11... 39 0.88
gb|AY058293.1| Drosophila melanogaster GH05443 full length ... 39 0.88
ref|NM_080164.1| Drosophila melanogaster homeobrain (hbn), ... 39 0.88
emb|AJ276705.1|DME276705 Drosophila melanogaster mRNA for h... 39 0.88
emb|X78218.1|DMREPO D.melanogaster mRNA for reversed polarity 39 0.88
gb|S78747.1|S78747 rk2=glial-specific homeodomain protein [... 39 0.88
ref|XM_080599.1| homeobrain, mRNA 39 0.88
gb|U77178.1|TAU77178 Triturus alpestris paired box homeodom... 39 0.88
ref|NM_016307.2| Homo sapiens paired related homeobox prote... 39 1.2
gb|AF061970.1|AF061970 Homo sapiens paired related homeobox... 39 1.2
emb|Z81459.1|CEC03H12 Caenorhabditis elegans cosmid C03H12,... 39 1.2
gb|U29174.1|RNU29174 Rattus norvegicus paired-like homeodom... 39 1.2
gb|BC014645.1|BC014645 Homo sapiens, Similar to paired rela... 39 1.2
gb|M14942.1|DROPRD92 D.melanogaster paired mRNA clone BSH9,... 39 1.2
emb|AL593851.6|AL593851 Human DNA sequence from clone RP11-... 38 1.5
gb|L09748.2|HUMPAX201 Homo sapiens paired-box protein (PAX2... 38 1.5
gb|U45245.1|HSPAXTWO01 Homo sapiens paired-box protein PAX2... 38 1.5
dbj|AB011526.1|AB011526 Hemicentrotus pulcherrimus early ty... 38 1.5
ref|NM_012921.1| Rattus norvegicus Cartilage homeo protein ... 38 1.5
gb|L14018.1|RATCART1X Rat cartilage homeoprotein 1 (Cart-1)... 38 1.5
gb|AF204760.1|AF204760 Oncorhynchus mykiss osteopontin-like... 38 1.5
gb|AC000393.1|AC000393 Genomic sequence from Human 9q34, co... 38 1.5
gb|U15276.1|XLU15276 Xenopus laevis cartilage homeoprotein ... 38 1.5
gb|BC010923.1|BC010923 Homo sapiens, Similar to cartilage p... 38 1.5
ref|NM_009116.1| Mus musculus paired related homeobox 2 (Pr... 38 2.0
ref|XM_005618.3| Homo sapiens paired related homeobox prote... 38 2.0
emb|X52875.1|MMHOMEOS8 Mouse homeobox gene Prx2 mRNA 38 2.0
gb|S76899.1|S76899 SpOtx=orthodenticle-related protein [Str... 38 2.0
gb|AF273696.1|AF273696 Bombyx mori clone BmTc1 Tc-like tran... 38 2.0
gb|AF275746.1|AF275746 Bombyx mori clone BmTc2 Tc-like tran... 38 2.0
gb|AC009462.6| Drosophila melanogaster, chromosome 3R, regi... 37 2.6
gb|AC005737.1|AC005737 Homo sapiens chromosome 16, BAC clon... 37 2.6
gb|AC084496.1|CBRG11A11 Caenorhabditis briggsae cosmid G11A... 37 2.6
gb|AC009394.4|AC009394 Drosophila melanogaster, chromosome ... 37 2.6
gb|AE003721.1|AE003721 Drosophila melanogaster genomic scaf... 37 2.6
emb|Z70754.1|CEF58E6 Caenorhabditis elegans cosmid F58E6, c... 37 2.6
emb|X79695.1|GGPRX2 G.gallus Prx-2 (S8) mRNA 37 2.6
ref|NG_000413.1| Drosophila melanogaster reversed polarity ... 37 2.6
gb|AF001049.1|XLAF001049 Xenopus laevis retinal homeobox 2A... 37 2.6
gb|S69508.1|S69508 Pax-6=transcription factor [chickens, em... 37 2.6
emb|X96745.1|HSPAX75 H.sapiens PAX7 gene, exon 5 37 2.6
gb|AF295531.1|AF295531 Hydra vulgaris aristaless-like prote... 37 3.4
dbj|AP001058.1|AP001058 Homo sapiens genomic DNA, chromosom... 37 3.4
gb|AF223388.1|AF223388 Salvelinus fontinalis osteopontin-li... 37 3.4
emb|AJ299416.1|CIN299416 Ciona intestinalis mRNA for Prx1 t... 37 3.4
gb|S70305.1|S70305 Homo sapiens isolate AN015 truncated ani... 37 3.4
gb|S66429.1|S66429 Pax-3 [mice, C3H/HeJ, mRNA Partial, 127 nt] 37 3.4
dbj|AB020318.1|AB020318 Gallus gallus mRNA for homeobox pro... 37 3.4
ref|NM_006982.1| Homo sapiens cartilage paired-class homeop... 37 3.4
gb|U31986.1|HSU31986 Human cartilage-specific homeodomain p... 37 3.4
dbj|AP001753.1|AP001753 Homo sapiens genomic DNA, chromosom... 37 3.4
gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome ... 37 4.4
gb|AE003459.2|AE003459 Drosophila melanogaster genomic scaf... 37 4.4
gb|AC084440.1|AC084440 Caenorhabditis briggsae cosmid CB005... 37 4.4
emb|AJ223300.1|DMAJ3300 Drosophila melanogaster mRNA for ho... 37 4.4
dbj|AK019971.1|AK019971 Mus musculus 8 days embryo whole bo... 37 4.4
ref|XM_079956.1| Rx, mRNA 37 4.4
gb|U81600.1|HSU81600 Homo sapiens paired-like homeodomain p... 37 4.4
dbj|AB017633.1|AB017633 Dugesia japonica mRNA for Djrax, pa... 37 4.4
gb|AF264703.1|AF264703 Astyanax mexicanus retinal homeobox ... 36 5.7
ref|XM_085071.1| Homo sapiens similar to HOMEOBOX PROTEIN G... 36 5.7
dbj|AB015750.1|AB015750 Gallus gallus mRNA for homeobox pro... 36 5.7
ref|XM_063154.1| Homo sapiens similar to goosecoid (H. sapi... 36 5.7
gb|U40955.1| Caenorhabditis elegans cosmid F48B9, complete ... 36 5.7
gb|AF017273.1|AF017273 Xenopus laevis retinal homeobox 1 (X... 36 7.5
ref|NM_011127.1| Mus musculus paired related homeobox 1 (Pr... 36 7.5
gb|AF071405.1|AF071405 Archegozetes longisetosus orthodenti... 36 7.5
gb|AF001910.1|AF001910 Drosophila melanogaster retinal home... 36 7.5
emb|X59725.1|MMHOBOXG M.musculus mRNA for homeobox gene 36 7.5
gb|U03873.1|MMU03873 Mus musculus homeobox (Pmx) mRNA, comp... 36 7.5
emb|Y15516.1|HVY15516 Hydra vulgaris mRNA for prdl-b protei... 36 7.5
gb|L06502.1|MUSMHOX Mus musculus MHox protein mRNA, complet... 36 7.5
ref|NM_022716.1| Homo sapiens paired mesoderm homeo box 1 (... 36 7.5
dbj|AK018615.1|AK018615 Mus musculus adult male cecum cDNA,... 36 7.5
dbj|AK008428.1|AK008428 Mus musculus adult male small intes... 36 7.5
dbj|D13433.1|CHKPRX1 Gallus gallus paired-related homeobox ... 36 7.5
gb|AY029294.1| Xenopus laevis transcription factor Otx1 (Ot... 36 7.5
emb|Y15515.1|HVY15515 Hydra vulgaris prdl-a gene 36 7.5
dbj|AK019503.1|AK019503 Mus musculus 0 day neonate skin cDN... 36 7.5
gb|AF195616.1|AF195616 Branchiostoma belcheri bicoid type t... 36 7.5
gb|AF001048.1|XLAF001048 Xenopus laevis retinal homeobox 1A... 36 7.5
gb|S82911.1|S82911 rHox=rHox protein [rats, ROS 17/2.8 oste... 36 7.5
gb|AF461698.1|AF461698 Gallus gallus paired-related homeobo... 36 7.5
gb|AF099908.1|AF099908 Haemonchus contortus transposase hom... 36 7.5
gb|M95929.1|HUMPHOX1A Human homeobox protein (PHOX1) mRNA, ... 36 7.5
ref|NM_007701.1| Mus musculus C. elegans ceh-10 homeo domai... 36 7.5
gb|L34808.1|MUSCHX10A Mus musculus (clone 6) homeobox prote... 36 7.5
ref|NM_006902.2| Homo sapiens paired mesoderm homeo box 1 (... 36 7.5
gb|AF273698.1|AF273698 Bombyx mori clone BmTc5 Tc-like tran... 36 7.5
gb|S69088.1|S69088 gMHox=homeobox [chickens, stage 17 embry... 36 7.5
gb|M80517.1|HS4B958RAJ Epstein-Barr virus, artifactual join... 35 9.8
gb|AF105330.1|AF105330 Clostridium cellulovorans ATP-depend... 35 9.8
gb|M15973.1|HS4IR1X Epstein-Barr virus P3HR-1 (BamHI W frag... 35 9.8
gb|J02072.1|HS4IRL epstein barr virus large internal repeat... 35 9.8
gb|J02069.1|HS4IR1 epstein-barr virus long internal reitera... 35 9.8
emb|V01555.1|EBV Epstein-Barr virus (EBV) genome, strain B95-8 35 9.8
emb|AJ250405.1|OLA250405 Oryzias latipes mRNA for Rx2 trans... 35 9.8
>emb|X55781.1|MMPAX2 M.musculus pax2 gene
Length = 2618
Score = 769 bits (1985), Expect = 0.0
Identities = 377/415 (90%), Positives = 377/415 (90%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 325 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 504
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE
Sbjct: 505 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 684
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTI NDP
Sbjct: 685 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDP 864
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ
Sbjct: 865 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 1044
Query: 241 SGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLD 300
SGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLD
Sbjct: 1045SGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLD 1224
Query: 301 EVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGM 360
EVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGM
Sbjct: 1225EVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGM 1404
Query: 361 VPGSEFSGNPYSHPQYTAYNEAWRFSNXXXXXXXXXXXXXXXXXXXXXXXXXDRH 415
VPGSEFSGNPYSHPQYTAYNEAWRFSN DRH
Sbjct: 1405VPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRSAPAARAAAYDRH 1569
>ref|NM_003987.1| Homo sapiens paired box gene 2 (PAX2), transcript variant a, mRNA
Length = 3490
Score = 749 bits (1935), Expect = 0.0
Identities = 369/416 (88%), Positives = 372/416 (88%), Gaps = 1/416 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+EVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 1263
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL
Sbjct: 1264QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1443
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLSAS NPELGSNVSGTQTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 1444DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1623
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSNXXXXXXXXXXXXXXXXXXXXXXXXXDRH 415
MVPGSEFSGNPYSHPQYTAYNEAWRFSN DRH
Sbjct: 1624MVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRSAPAARAAAYDRH 1791
>ref|NM_003989.1| Homo sapiens paired box gene 2 (PAX2), transcript variant d, mRNA
Length = 3471
Score = 748 bits (1932), Expect = 0.0
Identities = 366/388 (94%), Positives = 369/388 (94%), Gaps = 1/388 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+EVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 1263
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL
Sbjct: 1264QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1443
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLSAS NPELGSNVSGTQTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 1444DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1623
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
MVPGSEFSGNPYSHPQYTAYNEAWRFSN
Sbjct: 1624MVPGSEFSGNPYSHPQYTAYNEAWRFSN 1707
>emb|Y07617.1|MMPAX21NE M.musculus pax2-1Neu gene
Length = 1327
Score = 712 bits (1837), Expect = 0.0
Identities = 348/365 (95%), Positives = 350/365 (95%)
Frame = +1
Query: 23 GGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVI 82
GGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVI
Sbjct: 136 GGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVI 315
Query: 83 GGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRIIRTKV 142
GGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL EGICDNDTVPSVSSINRIIRTKV
Sbjct: 316 GGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKV 495
Query: 143 QQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKR 202
QQPFHPTPDGAGTGVTAPGHTI NDPVGSYSINGILGIPRSNGEKRKR
Sbjct: 496 QQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKR 675
Query: 203 EEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 262
EEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
Sbjct: 676 EEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 855
Query: 263 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQ 322
LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQ
Sbjct: 856 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQ 1035
Query: 323 TYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA 382
TYPVVTGRDMTSTTLPGYPPH+PPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA
Sbjct: 1036TYPVVTGRDMTSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA 1215
Query: 383 WRFSN 387
WRFSN
Sbjct: 1216WRFSN 1230
Score = 62.8 bits (151), Expect = 6e-08
Identities = 34/50 (68%), Positives = 35/50 (70%)
Frame = +3
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRP 50
MDMHCKADPFSAMHRHGGVNQLGG V RP P R E AH+G P
Sbjct: 69 MDMHCKADPFSAMHRHGGVNQLGG-GVCERPAP----TRRGEAAHRGAGP 203
>ref|NM_000278.1| Homo sapiens paired box gene 2 (PAX2), transcript variant b, mRNA
Length = 3421
Score = 687 bits (1773), Expect = 0.0
Identities = 346/416 (83%), Positives = 349/416 (83%), Gaps = 1/416 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E DVSEGSVPNGDS
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 1194
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL
Sbjct: 1195QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1374
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLSAS NPELGSNVSGTQTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 1375DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1554
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSNXXXXXXXXXXXXXXXXXXXXXXXXXDRH 415
MVPGSEFSGNPYSHPQYTAYNEAWRFSN DRH
Sbjct: 1555MVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRSAPAARAAAYDRH 1722
>gb|M89470.1|HUMPAX2A Human paired-box protein (PAX2) mRNA, complete cds
Length = 3421
Score = 687 bits (1773), Expect = 0.0
Identities = 346/416 (83%), Positives = 349/416 (83%), Gaps = 1/416 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E DVSEGSVPNGDS
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 1194
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL
Sbjct: 1195QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1374
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLSAS NPELGSNVSGTQTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 1375DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1554
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSNXXXXXXXXXXXXXXXXXXXXXXXXXDRH 415
MVPGSEFSGNPYSHPQYTAYNEAWRFSN DRH
Sbjct: 1555MVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRSAPAARAAAYDRH 1722
>ref|NM_003990.1| Homo sapiens paired box gene 2 (PAX2), transcript variant e, mRNA
Length = 3402
Score = 686 bits (1770), Expect = 0.0
Identities = 343/388 (88%), Positives = 346/388 (88%), Gaps = 1/388 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E DVSEGSVPNGDS
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 1194
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL
Sbjct: 1195QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1374
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLSAS NPELGSNVSGTQTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 1375DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1554
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
MVPGSEFSGNPYSHPQYTAYNEAWRFSN
Sbjct: 1555MVPGSEFSGNPYSHPQYTAYNEAWRFSN 1638
>ref|NM_003988.1| Homo sapiens paired box gene 2 (PAX2), transcript variant c, mRNA
Length = 3505
Score = 686 bits (1770), Expect = 0.0
Identities = 343/388 (88%), Positives = 346/388 (88%), Gaps = 1/388 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E DVSEGSVPNGDS
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 1194
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL
Sbjct: 1195QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1374
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLSAS NPELGSNVSGTQTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 1375DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1554
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
MVPGSEFSGNPYSHPQYTAYNEAWRFSN
Sbjct: 1555MVPGSEFSGNPYSHPQYTAYNEAWRFSN 1638
>dbj|AB026496.1|AB026496 Gallus gallus mRNA for paired-box containing protein Pax-2,
complete cds
Length = 1983
Score = 671 bits (1732), Expect = 0.0
Identities = 334/388 (86%), Positives = 340/388 (87%), Gaps = 1/388 (0%)
Frame = +2
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 173 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 352
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 353 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 532
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GTGV APGHTI ND
Sbjct: 533 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTGVAAPGHTIVPSTASPPVSSASND 712
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E DVSEGSVPNGDS
Sbjct: 713 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 823
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QS VDSLRKHLR DTFTQQQLEALDRVFERPSYPDVFQ SEHIKSEQGNEYSLPALTPGL
Sbjct: 824 QSSVDSLRKHLRGDTFTQQQLEALDRVFERPSYPDVFQTSEHIKSEQGNEYSLPALTPGL 1003
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLS SANP+LG+NVSG QTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 1004DEVKSSLSTSANPDLGTNVSGPQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1183
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
MVPGSEFSGNPYSHPQYT YNEAWRFSN
Sbjct: 1184MVPGSEFSGNPYSHPQYTTYNEAWRFSN 1267
>gb|L25597.1|HUMPBXPROA Homo sapiens paired box protein mRNA, complete cds
Length = 3504
Score = 630 bits (1625), Expect(2) = 0.0
Identities = 318/363 (87%), Positives = 321/363 (87%), Gaps = 1/363 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 544 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 723
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 724 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 903
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTI ND
Sbjct: 904 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 1083
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E DVSEGSVPNGDS
Sbjct: 1084PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 1194
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL
Sbjct: 1195QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 1374
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLSAS NPELGSNVSGTQTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 1375DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 1554
Query: 360 MVP 362
MVP
Sbjct: 1555MVP 1563
Score = 59.3 bits (142), Expect(2) = 0.0
Identities = 27/52 (51%), Positives = 27/52 (51%)
Frame = +3
Query: 364 SEFSGNPYSHPQYTAYNEAWRFSNXXXXXXXXXXXXXXXXXXXXXXXXXDRH 415
SEFSGNPYSHPQYTAYNEAWRFSN DRH
Sbjct: 1650 SEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRSAPAARAAAYDRH 1805
>emb|Y10119.1|XLHDPA4 Xenopus laevis mRNA for paired box protein, clone HD.PA4
Length = 1921
Score = 648 bits (1672), Expect = 0.0
Identities = 323/388 (83%), Positives = 335/388 (86%), Gaps = 1/388 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 19 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 198
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 199 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 378
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GT V PGHT+ ND
Sbjct: 379 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTLVPSTASPPVSSASND 558
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E D S+GS PNGDS
Sbjct: 559 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DGSDGSGPNGDS 669
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QS V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVFQ +EHIKSEQ +EYSLPALTPGL
Sbjct: 670 QSSVESLRKHLRADNFTQQQLEALDRVFERPSYPDVFQTAEHIKSEQASEYSLPALTPGL 849
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLSAS N +LGSNVSG Q+YPVVTGRDM+STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 850 DEVKSSLSASGNADLGSNVSGPQSYPVVTGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAG 1029
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
MVPGSEFSGNPYSHPQYT YNEAWRFSN
Sbjct: 1030MVPGSEFSGNPYSHPQYTTYNEAWRFSN 1113
>emb|Y10121.1|XLHDPA10 Xenopus laevis mRNA for paired box protein, clone HD.PA10
Length = 2121
Score = 631 bits (1628), Expect = e-179
Identities = 323/421 (76%), Positives = 335/421 (78%), Gaps = 34/421 (8%)
Frame = +3
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 120 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 299
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 300 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 479
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GT V PGHT+ ND
Sbjct: 480 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTLVPSTASPPVSSASND 659
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E D S+GS PNGDS
Sbjct: 660 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DGSDGSGPNGDS 770
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QS V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVFQ +EHIKSEQ +EYSLPALTPGL
Sbjct: 771 QSSVESLRKHLRADNFTQQQLEALDRVFERPSYPDVFQTAEHIKSEQASEYSLPALTPGL 950
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVKSSLSAS N +LGSNVSG Q+YPVVTGRDM+STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 951 DEVKSSLSASGNADLGSNVSGPQSYPVVTGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAG 1130
Query: 360 MVP---------------------------------GSEFSGNPYSHPQYTAYNEAWRFS 386
MVP GSEFSGNPYSHPQYT YNEAWRFS
Sbjct: 1131MVPGTNVSVHHSVQPVECCSCLSSSKPCLFHCRTGSGSEFSGNPYSHPQYTTYNEAWRFS 1310
Query: 387 N 387
N
Sbjct: 1311N 1313
>gb|AF067530.1|AF067530 Danio rerio paired box protein Pax2.1 splice variant mRNA, complete
cds
Length = 1221
Score = 621 bits (1602), Expect = e-176
Identities = 311/388 (80%), Positives = 330/388 (84%), Gaps = 1/388 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MD+HCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E
Sbjct: 181 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
G+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI NDP
Sbjct: 361 GVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASNDP 540
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGG-GLHLVWTLRDVSEGSVPNGDS 239
VGSYSINGILGIPRSNGEKRKR+ +V H+ G G H S+GS PN DS
Sbjct: 541 VGSYSINGILGIPRSNGEKRKRD--DVLWSGNHLDGRKIGYH-------GSDGSGPNSDS 693
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
Q V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL PGL
Sbjct: 694 QGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGL 873
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVK SLS S + +LGS+VS Q+YPVVTGR+M STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 874 DEVKPSLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAG 1047
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
MVPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1048MVPGSDFSGNPYSHPQYTTYNEAWRFSN 1131
>gb|AF067540.1|AF067540 Danio rerio paired box protein pax2.1 splice variant mRNA, partial
cds
Length = 1202
Score = 621 bits (1602), Expect = e-176
Identities = 311/388 (80%), Positives = 330/388 (84%), Gaps = 1/388 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MD+HCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E
Sbjct: 181 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
G+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI NDP
Sbjct: 361 GVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASNDP 540
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGG-GLHLVWTLRDVSEGSVPNGDS 239
VGSYSINGILGIPRSNGEKRKR+ +V H+ G G H S+GS PN DS
Sbjct: 541 VGSYSINGILGIPRSNGEKRKRD--DVLWSGNHLDGRKIGYH-------GSDGSGPNSDS 693
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
Q V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL PGL
Sbjct: 694 QGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGL 873
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAG 359
DEVK SLS S + +LGS+VS Q+YPVVTGR+M STTLPGYPPH+PPTGQGSYPTSTLAG
Sbjct: 874 DEVKPSLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAG 1047
Query: 360 MVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
MVPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1048MVPGSDFSGNPYSHPQYTTYNEAWRFSN 1131
>gb|AF067539.1|AF067539 Danio rerio paired box protein pax2.1 splice variant mRNA, partial
cds
Length = 1157
Score = 619 bits (1597), Expect = e-175
Identities = 307/387 (79%), Positives = 325/387 (83%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MD+HCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E
Sbjct: 181 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
G+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI NDP
Sbjct: 361 GVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASNDP 540
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
VGSYSINGILGIPRSNGEKRKR++ D S+GS PN DSQ
Sbjct: 541 VGSYSINGILGIPRSNGEKRKRDD-----------------------DGSDGSGPNSDSQ 651
Query: 241 SGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLD 300
V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL PGLD
Sbjct: 652 GSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLD 831
Query: 301 EVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGM 360
EVK SLS S + +LGS+VS Q+YPVVTGR+M STTLPGYPPH+PPTGQGSYPTSTLAGM
Sbjct: 832 EVKPSLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGM 1005
Query: 361 VPGSEFSGNPYSHPQYTAYNEAWRFSN 387
VPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1006VPGSDFSGNPYSHPQYTTYNEAWRFSN 1086
>gb|AF067531.1|AF067531 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1176
Score = 619 bits (1597), Expect = e-175
Identities = 307/387 (79%), Positives = 325/387 (83%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MD+HCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E
Sbjct: 181 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
G+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI NDP
Sbjct: 361 GVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASNDP 540
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
VGSYSINGILGIPRSNGEKRKR++ D S+GS PN DSQ
Sbjct: 541 VGSYSINGILGIPRSNGEKRKRDD-----------------------DGSDGSGPNSDSQ 651
Query: 241 SGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLD 300
V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL PGLD
Sbjct: 652 GSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLD 831
Query: 301 EVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGM 360
EVK SLS S + +LGS+VS Q+YPVVTGR+M STTLPGYPPH+PPTGQGSYPTSTLAGM
Sbjct: 832 EVKPSLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGM 1005
Query: 361 VPGSEFSGNPYSHPQYTAYNEAWRFSN 387
VPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1006VPGSDFSGNPYSHPQYTTYNEAWRFSN 1086
>emb|X63961.1|BRPAXZFB B.rerio pax[zf-b] mRNA
Length = 2409
Score = 619 bits (1597), Expect = e-175
Identities = 307/387 (79%), Positives = 325/387 (83%)
Frame = +3
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MD+HCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 627 MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 806
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E
Sbjct: 807 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE 986
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
G+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI NDP
Sbjct: 987 GVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASNDP 1166
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
VGSYSINGILGIPRSNGEKRKR++ D S+GS PN DSQ
Sbjct: 1167VGSYSINGILGIPRSNGEKRKRDD-----------------------DGSDGSGPNSDSQ 1277
Query: 241 SGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLD 300
V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL PGLD
Sbjct: 1278GSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLD 1457
Query: 301 EVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGM 360
EVK SLS S + +LGS+VS Q+YPVVTGR+M STTLPGYPPH+PPTGQGSYPTSTLAGM
Sbjct: 1458EVKPSLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTSTLAGM 1631
Query: 361 VPGSEFSGNPYSHPQYTAYNEAWRFSN 387
VPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1632VPGSDFSGNPYSHPQYTTYNEAWRFSN 1712
>gb|AF067534.1|AF067534 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1233
Score = 613 bits (1580), Expect = e-173
Identities = 310/392 (79%), Positives = 329/392 (83%), Gaps = 5/392 (1%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR----HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 56
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 57 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGG-GLHLVWTLRDVSEGSVP 235
NDPVGSYSINGILGIPRSNGEKRKR+ +V H+ G G H S+GS P
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRD--DVLWSGNHLDGRKIGYH-------GSDGSGP 693
Query: 236 NGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPAL 295
N DSQ V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL
Sbjct: 694 NSDSQGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPAL 873
Query: 296 TPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTS 355
PGLDEVK SLS S + +LGS+VS Q+YPVVTGR+M STTLPGYPPH+PPTGQGSYPTS
Sbjct: 874 NPGLDEVKPSLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTS 1047
Query: 356 TLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
TLAGMVPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1048TLAGMVPGSDFSGNPYSHPQYTTYNEAWRFSN 1143
>gb|AF067537.1|AF067537 Danio rerio paired box protein pax2.1 splice variant mRNA, partial
cds
Length = 1214
Score = 613 bits (1580), Expect = e-173
Identities = 310/392 (79%), Positives = 329/392 (83%), Gaps = 5/392 (1%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR----HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 56
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 57 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGG-GLHLVWTLRDVSEGSVP 235
NDPVGSYSINGILGIPRSNGEKRKR+ +V H+ G G H S+GS P
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRD--DVLWSGNHLDGRKIGYH-------GSDGSGP 693
Query: 236 NGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPAL 295
N DSQ V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL
Sbjct: 694 NSDSQGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPAL 873
Query: 296 TPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTS 355
PGLDEVK SLS S + +LGS+VS Q+YPVVTGR+M STTLPGYPPH+PPTGQGSYPTS
Sbjct: 874 NPGLDEVKPSLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTS 1047
Query: 356 TLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
TLAGMVPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1048TLAGMVPGSDFSGNPYSHPQYTTYNEAWRFSN 1143
>gb|AF067538.1|AF067538 Danio rerio paired box protein pax2.1 splice variant mRNA, partial
cds
Length = 1169
Score = 611 bits (1575), Expect = e-173
Identities = 306/391 (78%), Positives = 324/391 (82%), Gaps = 4/391 (1%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR----HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 56
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 57 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
NDPVGSYSINGILGIPRSNGEKRKR++ D S+GS PN
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRDD-----------------------DGSDGSGPN 651
Query: 237 GDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALT 296
DSQ V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL
Sbjct: 652 SDSQGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALN 831
Query: 297 PGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTST 356
PGLDEVK SLS S + +LGS+VS Q+YPVVTGR+M STTLPGYPPH+PPTGQGSYPTST
Sbjct: 832 PGLDEVKPSLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTST 1005
Query: 357 LAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
LAGMVPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1006LAGMVPGSDFSGNPYSHPQYTTYNEAWRFSN 1098
>gb|AF067541.1|AF067541 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1188
Score = 611 bits (1575), Expect = e-173
Identities = 306/391 (78%), Positives = 324/391 (82%), Gaps = 4/391 (1%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR----HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 56
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 57 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
NDPVGSYSINGILGIPRSNGEKRKR++ D S+GS PN
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRDD-----------------------DGSDGSGPN 651
Query: 237 GDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALT 296
DSQ V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL
Sbjct: 652 SDSQGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALN 831
Query: 297 PGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTST 356
PGLDEVK SLS S + +LGS+VS Q+YPVVTGR+M STTLPGYPPH+PPTGQGSYPTST
Sbjct: 832 PGLDEVKPSLSTSVSSDLGSSVS--QSYPVVTGREMASTTLPGYPPHVPPTGQGSYPTST 1005
Query: 357 LAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
LAGMVPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1006LAGMVPGSDFSGNPYSHPQYTTYNEAWRFSN 1098
>gb|AF067536.1|AF067536 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1268
Score = 606 bits (1562), Expect = e-171
Identities = 310/410 (75%), Positives = 329/410 (79%), Gaps = 23/410 (5%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MD+HCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E
Sbjct: 181 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
G+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI NDP
Sbjct: 361 GVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASNDP 540
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGG-GLHLVWTLRDVSEGSVPNGDS 239
VGSYSINGILGIPRSNGEKRKR+ +V H+ G G H S+GS PN DS
Sbjct: 541 VGSYSINGILGIPRSNGEKRKRD--DVLWSGNHLDGRKIGYH-------GSDGSGPNSDS 693
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
Q V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL PGL
Sbjct: 694 QGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGL 873
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTG----------------------RDMTSTTL 337
DEVK SLS S + +LGS+VS Q+YPVVT R+M STTL
Sbjct: 874 DEVKPSLSTSVSSDLGSSVS--QSYPVVTDKSAGSTVPAGH*DVHILDCFMCREMASTTL 1047
Query: 338 PGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
PGYPPH+PPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1048PGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEAWRFSN 1197
>gb|AF072547.1|AF072547 Danio rerio transcription factor (Pax2.2) mRNA, complete cds
Length = 2652
Score = 602 bits (1552), Expect = e-170
Identities = 306/415 (73%), Positives = 325/415 (77%)
Frame = +3
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MD+HCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 447 MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 626
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIR +LL E
Sbjct: 627 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAE 806
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
GICDNDTVPSVSSINRIIRTKVQQPFHP+PD GT ++ PGHTI NDP
Sbjct: 807 GICDNDTVPSVSSINRIIRTKVQQPFHPSPD--GTSLSTPGHTIIPSTASPPVSSSSNDP 980
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
VGSYSINGILGIPRSNGEKRKR+ D SEGS + DSQ
Sbjct: 981 VGSYSINGILGIPRSNGEKRKRD-----------------------ADGSEGSAQSSDSQ 1091
Query: 241 SGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLD 300
V+SLRKHLRAD FTQQQLEALDRVFERP++PDVF SEHIK EQ +EYSLPAL GLD
Sbjct: 1092GSVESLRKHLRADAFTQQQLEALDRVFERPAFPDVFPTSEHIKPEQASEYSLPALNTGLD 1271
Query: 301 EVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGM 360
EVK SLS+SA +LG++VS Q+YPV GRDM +TTLPGYPPH+PPTGQGSYPTSTLAGM
Sbjct: 1272EVKPSLSSSAASDLGASVS--QSYPV--GRDMANTTLPGYPPHVPPTGQGSYPTSTLAGM 1439
Query: 361 VPGSEFSGNPYSHPQYTAYNEAWRFSNXXXXXXXXXXXXXXXXXXXXXXXXXDRH 415
VPGSEFSGNPYSHPQYT YNEAWRFSN DRH
Sbjct: 1440VPGSEFSGNPYSHPQYTTYNEAWRFSNPAILSSPYYYSASRGSAPPTAATAYDRH 1604
>gb|AF067532.1|AF067532 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1280
Score = 597 bits (1540), Expect = e-169
Identities = 309/414 (74%), Positives = 328/414 (78%), Gaps = 27/414 (6%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR----HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 56
MD+HCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ
Sbjct: 1 MDIHCKADPFSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ 180
Query: 57 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +
Sbjct: 181 LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDR 360
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI
Sbjct: 361 LLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSA 540
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGG-GLHLVWTLRDVSEGSVP 235
NDPVGSYSINGILGIPRSNGEKRKR+ +V H+ G G H S+GS P
Sbjct: 541 SNDPVGSYSINGILGIPRSNGEKRKRD--DVLWSGNHLDGRKIGYH-------GSDGSGP 693
Query: 236 NGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPAL 295
N DSQ V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQ NEYSLPAL
Sbjct: 694 NSDSQGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPAL 873
Query: 296 TPGLDEVKSSLSASANPELGSNVSGTQTYPVVTG----------------------RDMT 333
PGLDEVK SLS S + +LGS+VS Q+YPVVT R+M
Sbjct: 874 NPGLDEVKPSLSTSVSSDLGSSVS--QSYPVVTDKSAGSTVPAGH*DVHILDCFMCREMA 1047
Query: 334 STTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
STTLPGYPPH+PPTGQGSYPTSTLAGMVPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 1048STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEAWRFSN 1209
>emb|Z97020.1|OLZ97020 Oryzias latipes mRNA for PAX2 protein
Length = 1082
Score = 583 bits (1503), Expect = e-164
Identities = 297/389 (76%), Positives = 316/389 (80%), Gaps = 8/389 (2%)
Frame = +1
Query: 7 ADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 66
ADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK
Sbjct: 1 ADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 180
Query: 67 ILGR--------YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLL 118
ILGR YYETGSIKPGVIGGSKPKVATPKVV+KIA+YKRQNPTMFAWEIR +LL
Sbjct: 181 ILGRWVKIPRPRYYETGSIKPGVIGGSKPKVATPKVVEKIADYKRQNPTMFAWEIRDRLL 360
Query: 119 REGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXN 178
EGICDNDTVPSVSSINRIIRTKVQQPFHP+PD GT ++ PGHTI N
Sbjct: 361 AEGICDNDTVPSVSSINRIIRTKVQQPFHPSPD--GTSLSTPGHTIVPSTASPPVTSASN 534
Query: 179 DPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGD 238
DP GSYSINGILGIPRSNGEKRKR++ D S+GS PN D
Sbjct: 535 DPAGSYSINGILGIPRSNGEKRKRDD-----------------------DGSDGSGPNSD 645
Query: 239 SQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPG 298
SQ V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF +EHIK EQ NEYSLPAL
Sbjct: 646 SQGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTAEHIKPEQANEYSLPALNSS 825
Query: 299 LDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLA 358
LDEVK SLS++ANP+LG +VS Q+YPV GRDM +TTLPGYPPH+PPTGQGSYPTSTLA
Sbjct: 826 LDEVKPSLSSTANPDLGPSVS--QSYPV--GRDMANTTLPGYPPHVPPTGQGSYPTSTLA 993
Query: 359 GMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
GMVPGSEFSGNPYSHPQYT YNEAW F+N
Sbjct: 994 GMVPGSEFSGNPYSHPQYTTYNEAWSFTN 1080
>emb|Y10120.1|XLHDPA7 Xenopus laevis mRNA for paired box protein, clone HD.PA7
Length = 2366
Score = 574 bits (1480), Expect = e-162
Identities = 309/458 (67%), Positives = 324/458 (70%), Gaps = 71/458 (15%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 76 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 255
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIR +LL
Sbjct: 256 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLA 435
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD GT V+ PGHT+ ND
Sbjct: 436 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD--GTPVSTPGHTLVPSTASPPVSSASND 609
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E D S+GS PNGDS
Sbjct: 610 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DGSDGSGPNGDS 720
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QS V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVFQ++EHIKSEQ +EYSLPALTPGL
Sbjct: 721 QSSVESLRKHLRADNFTQQQLEALDRVFERPSYPDVFQSAEHIKSEQASEYSLPALTPGL 900
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGR----------------------------- 330
DEVKSSLSAS N +LGSNVSG Q+YPVVT
Sbjct: 901 DEVKSSLSASGNADLGSNVSGPQSYPVVTESFASHLYLKQEPHEASLTPFTPSSLASSGL 1080
Query: 331 ------------DMTSTTLPGYPPHLPPTG-----------------------------Q 349
D ++ T + H PP G Q
Sbjct: 1081ADIQPFQMALTVDASTPTYSSFTHHGPPYGQFGSQPLIAGRDMSSTTLPGYPPHVPPTGQ 1260
Query: 350 GSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
GSYPTSTLAGMVPGSEFSGNPYSHPQYT YNEAWRFSN
Sbjct: 1261GSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSN 1374
>emb|Y10122.1|XLPBS4 Xenopus laevis mRNA for paired box protein, clone pBS.4
Length = 1525
Score = 551 bits (1419), Expect = e-155
Identities = 307/491 (62%), Positives = 321/491 (64%), Gaps = 104/491 (21%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 180
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKV TPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 181 SHGCVSKILGRYYETGSIKPGVIGGSKPKVTTPKVVDKIAEYKRQNPTMFAWEIRDRLLA 360
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKV+QPFHPTPDG+GT V PGHT+ ND
Sbjct: 361 EGICDNDTVPSVSSINRIIRTKVRQPFHPTPDGSGTPVGTPGHTLVPSTASPPVSSASND 540
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
PVGSYSINGILGIPRSNGEKRKR+E D S+GS PNGDS
Sbjct: 541 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DGSDGSGPNGDS 651
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
QS V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVFQ +EHIKSEQ +EYSLPALTPGL
Sbjct: 652 QSSVESLRKHLRADNFTQQQLEALDRVFERPSYPDVFQTAEHIKSEQASEYSLPALTPGL 831
Query: 300 DEVKSSLSASANPELGSNVSGTQTYPVVTGR----------------------------- 330
DEVKSSLSAS N +LGSNVSG Q+YPVVT
Sbjct: 832 DEVKSSLSASGNADLGSNVSGPQSYPVVTESFASHLYVKQEPHEASLTPFTPSSLASSGL 1011
Query: 331 ------------DMTSTTLPGYPPHLPPTGQ-GSYP------------------------ 353
D ++ T + H P GQ GS P
Sbjct: 1012ADIQPFQMALTVDASTPTYSSFTHHGPHYGQFGSQPLIAGRDMSSTTLPGYPPHVPPTGQ 1191
Query: 354 ----TSTLAGMVPG---------------------------------SEFSGNPYSHPQY 376
TSTLAGMVPG SEFSGNPYSHPQY
Sbjct: 1192GSYPTSTLAGMVPGTNVSVHHSVQPVECCSCLSSSKPCLFHCRTGSGSEFSGNPYSHPQY 1371
Query: 377 TAYNEAWRFSN 387
T YNEAWRFSN
Sbjct: 1372TTYNEAWRFSN 1404
>gb|AF067533.1|AF067533 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 1056
Score = 546 bits (1406), Expect = e-153
Identities = 277/387 (71%), Positives = 291/387 (74%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MD+HCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E
Sbjct: 181 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
G+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI NDP
Sbjct: 361 GVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASNDP 540
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
VGSYSINGILGIPRSNGEKRKR++ D S+GS PN DSQ
Sbjct: 541 VGSYSINGILGIPRSNGEKRKRDD-----------------------DGSDGSGPNSDSQ 651
Query: 241 SGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLD 300
V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF SEHIK EQG
Sbjct: 652 GSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQG------------- 792
Query: 301 EVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGM 360
R+M STTLPGYPPH+PPTGQGSYPTSTLAGM
Sbjct: 793 -----------------------------REMASTTLPGYPPHVPPTGQGSYPTSTLAGM 885
Query: 361 VPGSEFSGNPYSHPQYTAYNEAWRFSN 387
VPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 886 VPGSDFSGNPYSHPQYTTYNEAWRFSN 966
>gb|AF179300.1|AF179300 Xenopus laevis Pax-2 protein (Pax-2) mRNA, complete cds
Length = 2287
Score = 527 bits (1358), Expect = e-148
Identities = 297/490 (60%), Positives = 319/490 (64%), Gaps = 103/490 (21%)
Frame = +3
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 312 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 491
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIR +LL E
Sbjct: 492 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAE 671
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
GICDNDTVPSVSSINRIIRTKVQQPFHPTPDG T V+ PGHT+ NDP
Sbjct: 672 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDG--TPVSTPGHTLVPSTASPPVSSASNDP 845
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
VGSYSINGILGIPRSNGEKRKR+E D S+GS PNGDSQ
Sbjct: 846 VGSYSINGILGIPRSNGEKRKRDE-----------------------DGSDGSGPNGDSQ 956
Query: 241 SGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVF---------QASEH---------- 281
S V+SLRKHLRAD FTQQQLEALDRVFERPSYPDVF QASE+
Sbjct: 957 SSVESLRKHLRADNFTQQQLEALDRVFERPSYPDVFQSAEHIKSEQASEYSLPALTPGLD 1136
Query: 282 -IKS----------------------------------EQGNEYSLPALTP------GLD 300
+KS ++ +E SL TP GL
Sbjct: 1137EVKSSLSASGNADLGSNVSGPQSYPVVTESFASHLYLKQEPHEASLTPFTPSSLASSGLT 1316
Query: 301 E---------VKSSLSASANPELGS-NVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQG 350
++ L + +P + G+Q P++ GRDM+STTLPGYPPH+PPTGQG
Sbjct: 1317SSLSRWPSRLMRQHLRTAPSPTMAPYGQFGSQ--PLIAGRDMSSTTLPGYPPHVPPTGQG 1490
Query: 351 SYPTSTLAGMVP---------------------------------GSEFSGNPYSHPQYT 377
SYPTSTLAGMVP GSEFSGNPYSHPQYT
Sbjct: 1491SYPTSTLAGMVPGTNVSVHHSVQPVECCSCLSSSKPCLFHCRTGSGSEFSGNPYSHPQYT 1670
Query: 378 AYNEAWRFSN 387
YNEAWRFSN
Sbjct: 1671TYNEAWRFSN 1700
>emb|AJ010503.1|XLA010503 Xenopus laevis mRNA for paired box protein, clone pBS.5Pax16
Length = 1167
Score = 496 bits (1276), Expect = e-138
Identities = 251/390 (64%), Positives = 288/390 (73%), Gaps = 3/390 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
M++HCK DPF+AMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MEIHCKHDPFAAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIR +LL E
Sbjct: 181 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAE 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
+CDNDTVPSVSSINRIIRTKVQQP + H+I D
Sbjct: 361 RVCDNDTVPSVSSINRIIRTKVQQP-------TNQQIPPSNHSIASTGSVTQVSSVSTDS 519
Query: 181 VG-SYSINGILGIPRSNGE--KRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNG 237
G SYSI+GILGI SN E KRKR+E + E +PNG
Sbjct: 520 AGSSYSISGILGITSSNAETNKRKRDE-----------------------GIQESPIPNG 630
Query: 238 DSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTP 297
S G D LRK +R D FTQQQL+ LDRVFER Y D+F ++E IK EQ ++ +LT
Sbjct: 631 HSLPGRDFLRKQMRGDLFTQQQLDVLDRVFERQHYTDIFTSTEPIKPEQTEYSAMASLTG 810
Query: 298 GLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTL 357
GLDE+KSSL++ ++ ++G V G Q+YP+VTGRD+ STTLPGYPPH+PP GQGSY TL
Sbjct: 811 GLDEMKSSLTSPSSADIGGTVPGPQSYPLVTGRDLASTTLPGYPPHVPPAGQGSYSAPTL 990
Query: 358 AGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
GMVPGS+FSG+PYSHPQY++YN++WRF N
Sbjct: 991 TGMVPGSDFSGSPYSHPQYSSYNDSWRFPN 1080
>gb|M96944.1|HUMBSAP Human B-cell specific transcription factor (BSAP) mRNA, complete
cds
Length = 3277
Score = 468 bits (1205), Expect = e-130
Identities = 244/383 (63%), Positives = 278/383 (71%), Gaps = 4/383 (1%)
Frame = +1
Query: 9 PFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 68
P ++ HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL
Sbjct: 103 PRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 282
Query: 69 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTV 128
GRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E +CDNDTV
Sbjct: 283 GRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTV 462
Query: 129 PSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVG-SYSIN 187
PSVSSINRIIRTKVQQP V A H+I D G SYSI+
Sbjct: 463 PSVSSINRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSIS 621
Query: 188 GILGI--PRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS 245
GILGI P ++ KRKR+E + E VPNG S G D
Sbjct: 622 GILGITSPSADTNKRKRDE-----------------------GIQESPVPNGHSLPGRDF 732
Query: 246 LRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKS 304
LRK +R D FTQQQLE LDRVFER Y D+F +E IK EQ EYS + +L GLD++K+
Sbjct: 733 LRKQMRGDLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKA 912
Query: 305 SLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGS 364
+L++ ++GS+V G Q+YP+VTGRD+ STTLPGYPPH+PP GQGSY TL GMVPGS
Sbjct: 913 NLASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGS 1092
Query: 365 EFSGNPYSHPQYTAYNEAWRFSN 387
EFSG+PYSHPQY++YN++WRF N
Sbjct: 1093EFSGSPYSHPQYSSYNDSWRFPN 1161
>ref|NM_016734.1| Homo sapiens paired box gene 5 (B-cell lineage specific activator
protein) (PAX5), mRNA
Length = 3650
Score = 468 bits (1205), Expect = e-130
Identities = 244/383 (63%), Positives = 278/383 (71%), Gaps = 4/383 (1%)
Frame = +2
Query: 9 PFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 68
P ++ HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL
Sbjct: 476 PRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 655
Query: 69 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTV 128
GRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E +CDNDTV
Sbjct: 656 GRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTV 835
Query: 129 PSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVG-SYSIN 187
PSVSSINRIIRTKVQQP V A H+I D G SYSI+
Sbjct: 836 PSVSSINRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSIS 994
Query: 188 GILGI--PRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS 245
GILGI P ++ KRKR+E + E VPNG S G D
Sbjct: 995 GILGITSPSADTNKRKRDE-----------------------GIQESPVPNGHSLPGRDF 1105
Query: 246 LRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKS 304
LRK +R D FTQQQLE LDRVFER Y D+F +E IK EQ EYS + +L GLD++K+
Sbjct: 1106LRKQMRGDLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKA 1285
Query: 305 SLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGS 364
+L++ ++GS+V G Q+YP+VTGRD+ STTLPGYPPH+PP GQGSY TL GMVPGS
Sbjct: 1286NLASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGS 1465
Query: 365 EFSGNPYSHPQYTAYNEAWRFSN 387
EFSG+PYSHPQY++YN++WRF N
Sbjct: 1466EFSGSPYSHPQYSSYNDSWRFPN 1534
>ref|NM_008782.1| Mus musculus paired box gene 5 (Pax5), mRNA
Length = 1208
Score = 468 bits (1204), Expect = e-130
Identities = 243/376 (64%), Positives = 275/376 (72%), Gaps = 4/376 (1%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 81 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 260
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E +CDNDTVPSVSSIN
Sbjct: 261 SIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSIN 440
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVG-SYSINGILGI-- 192
RIIRTKVQQP V A H+I D G SYSI+GILGI
Sbjct: 441 RIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITS 599
Query: 193 PRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA 252
P ++ KRKR+E + E VPNG S G D LRK +R
Sbjct: 600 PSADTNKRKRDE-----------------------GIQESPVPNGHSLPGRDFLRKQMRG 710
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASAN 311
D FTQQQLE LDRVFER Y D+F +E IK EQ EYS + +L GLD++K++L++
Sbjct: 711 DLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLTSPTP 890
Query: 312 PELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPY 371
++GS+V G Q+YP+VTGRD+ STTLPGYPPH+PP GQGSY TL GMVPGSEFSG+PY
Sbjct: 891 ADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPY 1070
Query: 372 SHPQYTAYNEAWRFSN 387
SHPQY++YN++WRF N
Sbjct: 1071SHPQYSSYNDSWRFPN 1118
>gb|M97013.1|MUSBSAP Mouse B-cell specific transcription factor (Pax-5) mRNA, complete
cds
Length = 1208
Score = 468 bits (1204), Expect = e-130
Identities = 243/376 (64%), Positives = 275/376 (72%), Gaps = 4/376 (1%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 81 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 260
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E +CDNDTVPSVSSIN
Sbjct: 261 SIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSIN 440
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVG-SYSINGILGI-- 192
RIIRTKVQQP V A H+I D G SYSI+GILGI
Sbjct: 441 RIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITS 599
Query: 193 PRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA 252
P ++ KRKR+E + E VPNG S G D LRK +R
Sbjct: 600 PSADTNKRKRDE-----------------------GIQESPVPNGHSLPGRDFLRKQMRG 710
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASAN 311
D FTQQQLE LDRVFER Y D+F +E IK EQ EYS + +L GLD++K++L++
Sbjct: 711 DLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLTSPTP 890
Query: 312 PELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPY 371
++GS+V G Q+YP+VTGRD+ STTLPGYPPH+PP GQGSY TL GMVPGSEFSG+PY
Sbjct: 891 ADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPY 1070
Query: 372 SHPQYTAYNEAWRFSN 387
SHPQY++YN++WRF N
Sbjct: 1071SHPQYSSYNDSWRFPN 1118
>dbj|AB004249.1|AB004249 Gallus gallus Pax-5 mRNA, complete cds
Length = 1302
Score = 463 bits (1191), Expect = e-128
Identities = 239/376 (63%), Positives = 272/376 (71%), Gaps = 4/376 (1%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 158 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 337
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E +CDNDTVPSVSSIN
Sbjct: 338 SIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSIN 517
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVG-SYSINGILGI-- 192
RIIRTKVQQP V H+I D G SYSI+GILGI
Sbjct: 518 RIIRTKVQQP-------PNQQVPVSSHSIASTGSVTQVSSVSTDSAGSSYSISGILGIAS 676
Query: 193 PRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA 252
P + KRKR+E + E VPNG S G D LRK +R
Sbjct: 677 PGTESNKRKRDE-----------------------GIQEPPVPNGHSLPGRDFLRKQMRG 787
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASAN 311
D FTQQQLE LDRVFER Y D+F +E IK EQ EYS + +L GLD++K+++++ +
Sbjct: 788 DLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQATEYSAMASLAGGLDDMKANITSPTS 967
Query: 312 PELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPY 371
+LG++V G Q+YP+VTGR++ STTLPGYPPH+PP GQGSY L GMVPGSEFSG+PY
Sbjct: 968 ADLGASVPGPQSYPIVTGRELASTTLPGYPPHVPPAGQGSYSAPALTGMVPGSEFSGSPY 1147
Query: 372 SHPQYTAYNEAWRFSN 387
SHPQY+ YN++WRF N
Sbjct: 1148SHPQYSTYNDSWRFPN 1195
>ref|NM_013951.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8B,
mRNA
Length = 1183
Score = 428 bits (1100), Expect = e-118
Identities = 224/374 (59%), Positives = 264/374 (69%), Gaps = 2/374 (0%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 38 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 217
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 218 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 397
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 398 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 577
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 578 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 688
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++L+ S P
Sbjct: 689 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP- 862
Query: 314 LGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSH 373
LG N+S QTYPVV GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H
Sbjct: 863 LGRNLSTHQTYPVVAGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGH 1042
Query: 374 PQYTAYNEAWRFSN 387
Y++Y+EAWRF N
Sbjct: 1043TPYSSYSEAWRFPN 1084
>ref|XM_096020.1| Homo sapiens paired box gene 2 (PAX2), mRNA
Length = 2458
Score = 423 bits (1088), Expect = e-116
Identities = 212/252 (84%), Positives = 214/252 (84%)
Frame = +2
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RIIRTKVQQPFHPTPDGAGTGVTAPGHTI NDPVGSYSINGILGIPRS
Sbjct: 2 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRS 181
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADTF 255
NGEKRKR+E DVSEGSVPNGDSQSGVDSLRKHLRADTF
Sbjct: 182 NGEKRKRDE-----------------------DVSEGSVPNGDSQSGVDSLRKHLRADTF 292
Query: 256 TQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELG 315
TQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSAS NPELG
Sbjct: 293 TQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELG 472
Query: 316 SNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 375
SNVSGTQTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ
Sbjct: 473 SNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 652
Query: 376 YTAYNEAWRFSN 387
YTAYNEAWRFSN
Sbjct: 653 YTAYNEAWRFSN 688
>ref|XM_071372.1| Homo sapiens paired box gene 2 (PAX2), mRNA
Length = 2458
Score = 423 bits (1088), Expect = e-116
Identities = 212/252 (84%), Positives = 214/252 (84%)
Frame = +2
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RIIRTKVQQPFHPTPDGAGTGVTAPGHTI NDPVGSYSINGILGIPRS
Sbjct: 2 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRS 181
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADTF 255
NGEKRKR+E DVSEGSVPNGDSQSGVDSLRKHLRADTF
Sbjct: 182 NGEKRKRDE-----------------------DVSEGSVPNGDSQSGVDSLRKHLRADTF 292
Query: 256 TQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELG 315
TQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSAS NPELG
Sbjct: 293 TQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELG 472
Query: 316 SNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 375
SNVSGTQTYPVVTGRDM STTLPGYPPH+PPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ
Sbjct: 473 SNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 652
Query: 376 YTAYNEAWRFSN 387
YTAYNEAWRFSN
Sbjct: 653 YTAYNEAWRFSN 688
>gb|AF072548.1|AF072548 Danio rerio transcription factor (Pax5) mRNA, partial cds
Length = 1110
Score = 390 bits (1002), Expect = e-106
Identities = 212/364 (58%), Positives = 247/364 (67%), Gaps = 3/364 (0%)
Frame = +1
Query: 27 VNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSK 86
VNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI+PGVIGGSK
Sbjct: 1 VNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSK 180
Query: 87 PKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRIIRTKVQQPF 146
PKVATPKVVDKIA+YKRQNPTMFAWEIR +LL E +CDND+VPSVSSINRIIRTKVQQP
Sbjct: 181 PKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAERVCDNDSVPSVSSINRIIRTKVQQP- 357
Query: 147 HPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVG-SYSINGILGIPR-SNGEKRKREE 204
P GA H + +D G SYSI+GILGI ++ KRKR+
Sbjct: 358 -PGQSGA-----VSAHNLASTVAVTQVSAVTSDAAGSSYSISGILGISSPADASKRKRD- 516
Query: 205 VEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALD 264
DP + + + NG + SG D LRK +R + FT QQLE D
Sbjct: 517 -----DP-----------------LQDSPLANGHNHSGRDFLRKQMRGELFTPQQLETSD 630
Query: 265 RVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASANPELGSNVSGTQT 323
YS + +L GL+E+K+SL+ ELGS V+G Q+
Sbjct: 631 -------------------------YSAMASLAGGLEEMKNSLANQTGAELGSTVAGPQS 735
Query: 324 YPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAW 383
YP+V+GRD+ STTLPGYPPH+PPTGQGSY T +L GMVPG +FSG+PYSHPQY+ YNE+W
Sbjct: 736 YPLVSGRDLASTTLPGYPPHVPPTGQGSYSTPSLTGMVPGGDFSGSPYSHPQYSTYNESW 915
Query: 384 RFSN 387
RF+N
Sbjct: 916 RFAN 927
>gb|BC020526.1|BC020526 Mus musculus, paired box gene 8, clone MGC:18390 IMAGE:4239835,
mRNA, complete cds
Length = 2565
Score = 390 bits (1001), Expect = e-106
Identities = 225/443 (50%), Positives = 268/443 (59%), Gaps = 71/443 (16%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 193 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 372
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 373 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 552
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 553 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 732
Query: 194 R-SNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA 252
+ N KRK ++ + +D S+ DSQS RKHLR
Sbjct: 733 QPGNDNKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRT 843
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVK--------- 303
DTF+Q LEAL+ FER YP+ + + H K EQG Y LP L LD+ K
Sbjct: 844 DTFSQHHLEALECPFERQHYPEAYASPSHTKGEQGL-YPLPLLNSALDDGKATLTSSNTP 1020
Query: 304 -------------------------------------SSLSASANPEL---------GSN 317
SSLS+SA +L G++
Sbjct: 1021LGRNLSTHQTYPVVADPHSPFAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGAS 1200
Query: 318 VSGTQTYP-------------VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGS 364
V +P +++GR+M TLPGYPPH+P +GQGSY +S +AGMV GS
Sbjct: 1201VPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGS 1380
Query: 365 EFSGNPYSHPQYTAYNEAWRFSN 387
E+SGN YSH Y++Y+EAWRF N
Sbjct: 1381EYSGNAYSHTPYSSYSEAWRFPN 1449
>ref|NM_011040.1| Mus musculus paired box gene 8 (Pax8), mRNA
Length = 2514
Score = 390 bits (1001), Expect = e-106
Identities = 225/443 (50%), Positives = 268/443 (59%), Gaps = 71/443 (16%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 183 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 362
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 363 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 542
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 543 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 722
Query: 194 R-SNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA 252
+ N KRK ++ + +D S+ DSQS RKHLR
Sbjct: 723 QPGNDNKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRT 833
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVK--------- 303
DTF+Q LEAL+ FER YP+ + + H K EQG Y LP L LD+ K
Sbjct: 834 DTFSQHHLEALECPFERQHYPEAYASPSHTKGEQGL-YPLPLLNSALDDGKATLTSSNTP 1010
Query: 304 -------------------------------------SSLSASANPEL---------GSN 317
SSLS+SA +L G++
Sbjct: 1011LGRNLSTHQTYPVVADPHSPFAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGAS 1190
Query: 318 VSGTQTYP-------------VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGS 364
V +P +++GR+M TLPGYPPH+P +GQGSY +S +AGMV GS
Sbjct: 1191VPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGS 1370
Query: 365 EFSGNPYSHPQYTAYNEAWRFSN 387
E+SGN YSH Y++Y+EAWRF N
Sbjct: 1371EYSGNAYSHTPYSSYSEAWRFPN 1439
>emb|X57487.1|MMPAX8 M.musculus mRNA Pax8
Length = 2514
Score = 390 bits (1001), Expect = e-106
Identities = 225/443 (50%), Positives = 268/443 (59%), Gaps = 71/443 (16%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 183 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 362
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 363 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 542
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 543 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 722
Query: 194 R-SNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA 252
+ N KRK ++ + +D S+ DSQS RKHLR
Sbjct: 723 QPGNDNKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRT 833
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVK--------- 303
DTF+Q LEAL+ FER YP+ + + H K EQG Y LP L LD+ K
Sbjct: 834 DTFSQHHLEALECPFERQHYPEAYASPSHTKGEQGL-YPLPLLNSALDDGKATLTSSNTP 1010
Query: 304 -------------------------------------SSLSASANPEL---------GSN 317
SSLS+SA +L G++
Sbjct: 1011LGRNLSTHQTYPVVADPHSPFAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGAS 1190
Query: 318 VSGTQTYP-------------VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGS 364
V +P +++GR+M TLPGYPPH+P +GQGSY +S +AGMV GS
Sbjct: 1191VPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGS 1370
Query: 365 EFSGNPYSHPQYTAYNEAWRFSN 387
E+SGN YSH Y++Y+EAWRF N
Sbjct: 1371EYSGNAYSHTPYSSYSEAWRFPN 1439
>emb|X83591.1|CCPAX8A C.canis Pax8a mRNA
Length = 1380
Score = 378 bits (970), Expect = e-103
Identities = 221/445 (49%), Positives = 265/445 (58%), Gaps = 73/445 (16%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 28 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 207
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 208 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 387
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 388 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 567
Query: 194 RSNGE-KRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA 252
+ + KRK ++ + +D S+ DSQS RKHLR
Sbjct: 568 QPGSDSKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRT 678
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPAL-TPGLDEVK-------- 303
D F+Q LE L+ FER YP+ + + H K EQG Y LP L + LD+ K
Sbjct: 679 DAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGL-YPLPLLNSAALDDGKATLTPSNT 855
Query: 304 --------------------------------------SSLSASANPEL----------G 315
SSLS+SA +L G
Sbjct: 856 PLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGGAGVPAG 1035
Query: 316 SNVSGTQTYP-------------VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
++V +P +++GR+M TLPGYPPH+P +GQGSY +S +AGMV
Sbjct: 1036ASVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVA 1215
Query: 363 GSEFSGNPYSHPQYTAYNEAWRFSN 387
GSE+SGN Y H Y++Y EAWRF N
Sbjct: 1216GSEYSGNAYGHTPYSSYGEAWRFPN 1290
>gb|BC001060.1|BC001060 Homo sapiens, paired box gene 8, clone MGC:2141 IMAGE:2963877,
mRNA, complete cds
Length = 2707
Score = 374 bits (960), Expect = e-102
Identities = 220/437 (50%), Positives = 261/437 (59%), Gaps = 65/437 (14%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 194 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 373
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 374 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 553
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 554 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 733
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 734 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 844
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++L+ S P
Sbjct: 845 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP- 1018
Query: 314 LGSNVSGTQTYPVV------------TGRDMTSTTLP----------------GYPPH-- 343
LG N+S QTYPVV T +S++ P G PP
Sbjct: 1019LGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNA 1198
Query: 344 -----------------------------LPP----TGQGSYPTSTLAGMVPGSEFSGNP 370
PP +GQGSY +S +AGMV GSE+SGN
Sbjct: 1199FPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNA 1378
Query: 371 YSHPQYTAYNEAWRFSN 387
Y H Y++Y+EAWRF N
Sbjct: 1379YGHTPYSSYSEAWRFPN 1429
>ref|NM_003466.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8A,
mRNA
Length = 1372
Score = 374 bits (960), Expect = e-102
Identities = 220/437 (50%), Positives = 261/437 (59%), Gaps = 65/437 (14%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 38 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 217
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 218 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 397
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 398 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 577
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 578 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 688
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++L+ S P
Sbjct: 689 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP- 862
Query: 314 LGSNVSGTQTYPVV------------TGRDMTSTTLP----------------GYPPH-- 343
LG N+S QTYPVV T +S++ P G PP
Sbjct: 863 LGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNA 1042
Query: 344 -----------------------------LPP----TGQGSYPTSTLAGMVPGSEFSGNP 370
PP +GQGSY +S +AGMV GSE+SGN
Sbjct: 1043FPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNA 1222
Query: 371 YSHPQYTAYNEAWRFSN 387
Y H Y++Y+EAWRF N
Sbjct: 1223YGHTPYSSYSEAWRFPN 1273
>gb|L19606.1|HUMPAX8A Human paired box homeotic protein (PAX8) mRNA, complete cds
Length = 1372
Score = 374 bits (960), Expect = e-102
Identities = 220/437 (50%), Positives = 261/437 (59%), Gaps = 65/437 (14%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 38 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 217
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 218 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 397
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 398 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 577
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 578 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 688
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++L+ S P
Sbjct: 689 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP- 862
Query: 314 LGSNVSGTQTYPVV------------TGRDMTSTTLP----------------GYPPH-- 343
LG N+S QTYPVV T +S++ P G PP
Sbjct: 863 LGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNA 1042
Query: 344 -----------------------------LPP----TGQGSYPTSTLAGMVPGSEFSGNP 370
PP +GQGSY +S +AGMV GSE+SGN
Sbjct: 1043FPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNA 1222
Query: 371 YSHPQYTAYNEAWRFSN 387
Y H Y++Y+EAWRF N
Sbjct: 1223YGHTPYSSYSEAWRFPN 1273
>ref|NM_031141.1| Rattus norvegicus Pax-8 protein (Pax8), mRNA
Length = 1693
Score = 371 bits (953), Expect = e-101
Identities = 215/442 (48%), Positives = 257/442 (57%), Gaps = 70/442 (15%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 73 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 252
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 253 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 432
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSI+G+LGI
Sbjct: 433 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSIHGLLGIA 612
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNG-DSQSGVDSLRKHLRA 252
++ + + D +G DSQS RKHLR
Sbjct: 613 QAGSDTHRGR----------------------CDDSDQGQCRLSIDSQSSSSGPRKHLRT 726
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQG------------------------- 287
DTF Q LE L+ FER YP+ + + H K EQG
Sbjct: 727 DTFGQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPL 906
Query: 288 -----------------NEYSLPALTPGLDE---VKSSLSASANPEL---GSNVSGTQTY 324
+ Y++ TP L SSLS+SA +L GS +
Sbjct: 907 GRNLSTHQTYPVVADPHSPYAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASV 1086
Query: 325 P-------------------VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSE 365
P +++GR+M +LPGYPPH+P +GQGSY +S +AGMV GSE
Sbjct: 1087PPFNAFSHAASVYGQFTGQALLSGREMVGPSLPGYPPHIPTSGQGSYASSAIAGMVAGSE 1266
Query: 366 FSGNPYSHPQYTAYNEAWRFSN 387
+SGN YSH Y +Y+EAWRF N
Sbjct: 1267YSGNAYSHTPYASYSEAWRFPN 1332
>emb|X94246.1|RNPAX8 R.norvegicus mRNA for Pax-8 protein
Length = 1693
Score = 371 bits (953), Expect = e-101
Identities = 215/442 (48%), Positives = 257/442 (57%), Gaps = 70/442 (15%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 73 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 252
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 253 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 432
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSI+G+LGI
Sbjct: 433 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSIHGLLGIA 612
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNG-DSQSGVDSLRKHLRA 252
++ + + D +G DSQS RKHLR
Sbjct: 613 QAGSDTHRGR----------------------CDDSDQGQCRLSIDSQSSSSGPRKHLRT 726
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQG------------------------- 287
DTF Q LE L+ FER YP+ + + H K EQG
Sbjct: 727 DTFGQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPL 906
Query: 288 -----------------NEYSLPALTPGLDE---VKSSLSASANPEL---GSNVSGTQTY 324
+ Y++ TP L SSLS+SA +L GS +
Sbjct: 907 GRNLSTHQTYPVVADPHSPYAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASV 1086
Query: 325 P-------------------VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSE 365
P +++GR+M +LPGYPPH+P +GQGSY +S +AGMV GSE
Sbjct: 1087PPFNAFSHAASVYGQFTGQALLSGREMVGPSLPGYPPHIPTSGQGSYASSAIAGMVAGSE 1266
Query: 366 FSGNPYSHPQYTAYNEAWRFSN 387
+SGN YSH Y +Y+EAWRF N
Sbjct: 1267YSGNAYSHTPYASYSEAWRFPN 1332
>emb|X69699.1|HSPAX8A H.sapiens Pax8 mRNA
Length = 2711
Score = 371 bits (953), Expect = e-101
Identities = 219/437 (50%), Positives = 260/437 (59%), Gaps = 65/437 (14%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 188 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 367
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 368 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 547
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 548 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 727
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 728 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 838
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++L+ S P
Sbjct: 839 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP- 1012
Query: 314 LGSNVSGTQTYPVV------------TGRDMTSTTLP----------------GYPPH-- 343
LG N+S QTYPVV T +S++ P G PP
Sbjct: 1013LGRNLSTHQTYPVVADPHSPLAIKQETPEVSSSSSTPCSLSSSALLDLQQVGSGVPPFNA 1192
Query: 344 -----------------------------LPP----TGQGSYPTSTLAGMVPGSEFSGNP 370
PP +GQGSY +S +AGMV GSE+SGN
Sbjct: 1193FPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNA 1372
Query: 371 YSHPQYTAYNEAWRFSN 387
Y H Y++Y+EAW F N
Sbjct: 1373YGHTPYSSYSEAWGFPN 1423
>emb|AJ000668.1|XLAJ668 Xenopus laevis mRNA for paired box protein, clone pBS.28*
Length = 904
Score = 369 bits (946), Expect = e-100
Identities = 190/248 (76%), Positives = 201/248 (80%), Gaps = 7/248 (2%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIR +LL E
Sbjct: 181 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAE 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
GICDNDTVPSVSSINRIIRTKVQQPFHPTPD GT V+ PGHT+ NDP
Sbjct: 361 GICDNDTVPSVSSINRIIRTKVQQPFHPTPD--GTPVSTPGHTLVPSTASPPVSSASNDP 534
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTD------PAHI-RGGGGLHLVWTLRDVSEGS 233
VGSYSINGILGIPRSNGEKRKR+E + P H+ G G + TL + GS
Sbjct: 535 VGSYSINGILGIPRSNGEKRKRDEGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGS 714
Query: 234 VPNGDSQS 241
+G+ S
Sbjct: 715 EFSGNPYS 738
Score = 132 bits (333), Expect = 5e-29
Identities = 81/179 (45%), Positives = 104/179 (57%), Gaps = 23/179 (12%)
Frame = +1
Query: 232 GSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVF-----ERPSYPDVFQASEHIKSEQ 286
GS P + VD + + R + T E DR+ + + P V + I+++
Sbjct: 250 GSKPKVATPKVVDKIADYKRQNP-TMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKV 426
Query: 287 GNEY-----SLPALTPGLDEVKSS----LSASANPELGS-NVSGTQTYPVVTG------- 329
+ P TPG V S+ +S+++N +GS +++G P G
Sbjct: 427 QQPFHPTPDGTPVSTPGHTLVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDE 606
Query: 330 -RDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
RDM+STTLPGYPPH+PPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT YNEAWRFSN
Sbjct: 607 GRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSN 783
>emb|AJ000667.1|XLAJ667 Xenopus laevis mRNA for paired box protein, clone pBS.5*
Length = 1021
Score = 369 bits (946), Expect = e-100
Identities = 181/205 (88%), Positives = 185/205 (89%), Gaps = 1/205 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 180
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 181 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 360
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GT V PGHT+ ND
Sbjct: 361 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTLVPSTASPPVSSASND 540
Query: 180 PVGSYSINGILGIPRSNGEKRKREE 204
PVGSYSINGILGIPRSNGEKRKR+E
Sbjct: 541 PVGSYSINGILGIPRSNGEKRKRDE 615
Score = 114 bits (284), Expect = 2e-23
Identities = 81/217 (37%), Positives = 105/217 (48%), Gaps = 61/217 (28%)
Frame = +1
Query: 232 GSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVF-----ERPSYPDVFQASEHIKSEQ 286
GS P + VD + ++ R + T E DR+ + + P V + I+++
Sbjct: 253 GSKPKVATPKVVDKIAEYKRQNP-TMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKV 429
Query: 287 GNEY-------SLPALTPGLDEVKSS----LSASANPELGS-NVSGTQTYPVVTG----- 329
+ P TPG V S+ +S+++N +GS +++G P G
Sbjct: 430 QQPFHPTPDGSGTPVGTPGHTLVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKR 609
Query: 330 ---RDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVP------------------------ 362
RDM+STTLPGYPPH+PPTGQGSYPTSTLAGMVP
Sbjct: 610 DEGRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGTNVSVHHSVQPVECCSCLSSSKP 789
Query: 363 ------------GSEFSGNPYSHPQYTAYNEAWRFSN 387
GSEFSGNPYSHPQYT YNEAWRFSN
Sbjct: 790 CLFHCRTGSGFLGSEFSGNPYSHPQYTTYNEAWRFSN 900
>gb|AF411466.1|AF411466 Petromyzon marinus transcription factor Pax2 mRNA, partial cds
Length = 1551
Score = 367 bits (943), Expect = e-100
Identities = 201/327 (61%), Positives = 230/327 (69%), Gaps = 5/327 (1%)
Frame = +1
Query: 66 KILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDN 125
KILGRYYETGSI+PGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL E +CD
Sbjct: 1 KILGRYYETGSIRPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAERVCDT 180
Query: 126 DTVPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPV-GS 183
DTVPSVSSINRIIRTKVQQPFH P+ D G V++ H I ND V S
Sbjct: 181 DTVPSVSSINRIIRTKVQQPFHLPSQDSPGQQVSSSSHGISSSSAVTPVSSAPNDSVASS 360
Query: 184 YSINGILGIPRSNGE-KRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSG 242
YSINGILGIPRSNG+ KRKR++ V V GDS
Sbjct: 361 YSINGILGIPRSNGDGKRKRDDDVV------------------------SPVQAGDSPVS 468
Query: 243 VDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEY-SLPALTPGLDE 301
D++RK LR+D F QQQLEAL+R FER Y +VF +EH K EQG EY L AL G+D+
Sbjct: 469 GDAVRKQLRSDAFAQQQLEALERAFERQHYAEVF--AEHGKPEQGTEYPPLSALGAGMDD 642
Query: 302 VKSSLSASANPELGSNVSGTQTYPVVTGRDM-TSTTLPGYPPHLPPTGQGSYPTSTLAGM 360
VKS + PE+ + Q+YP+VTGR++ STTLPGYPPH+PPTGQGSY +S+LAGM
Sbjct: 643 VKSGMVGPGTPEMTA-----QSYPLVTGRELGNSTTLPGYPPHVPPTGQGSYSSSSLAGM 807
Query: 361 VPGSEFSGNPYSHPQYTAYNEAWRFSN 387
VPGSEF GNPYSHPQYTAYN+AWRF+N
Sbjct: 808 VPGSEFPGNPYSHPQYTAYNDAWRFTN 888
>gb|AF067535.1|AF067535 Danio rerio paired box protein pax2.1 splice variant mRNA, complete
cds
Length = 879
Score = 364 bits (934), Expect = 9e-99
Identities = 175/204 (85%), Positives = 184/204 (89%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MD+HCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL E
Sbjct: 181 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
G+CDNDTVPSVSSINRIIRTKVQQPFHP+ DG GT ++ GHTI NDP
Sbjct: 361 GVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIVPSTASPPVSSASNDP 540
Query: 181 VGSYSINGILGIPRSNGEKRKREE 204
VGSYSINGILGIPRSNGEKRKR++
Sbjct: 541 VGSYSINGILGIPRSNGEKRKRDD 612
Score = 127 bits (318), Expect = 2e-27
Identities = 83/211 (39%), Positives = 106/211 (49%), Gaps = 4/211 (1%)
Frame = +1
Query: 181 VGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRD--VSEGSVPNGD 238
+G Y G + G K K +V A + W +RD ++EG N D
Sbjct: 202 LGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDN-D 378
Query: 239 SQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPG 298
+ V S+ + +R ++P +P + S G+ +P
Sbjct: 379 TVPSVSSINRIIRTKV-------------QQPFHPSSDGTGTPL-STAGHTIVPSTASPP 516
Query: 299 LDEVKSSL--SASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTST 356
+ + S S N LG S + GR+M STTLPGYPPH+PPTGQGSYPTST
Sbjct: 517 VSSASNDPVGSYSINGILGIPRSNGEKRKRDDGREMASTTLPGYPPHVPPTGQGSYPTST 696
Query: 357 LAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
LAGMVPGS+FSGNPYSHPQYT YNEAWRFSN
Sbjct: 697 LAGMVPGSDFSGNPYSHPQYTTYNEAWRFSN 789
>emb|Y10123.1|XLPBS32 Xenopus laevis mRNA for paired box protein, clone pBS.32
Length = 1096
Score = 354 bits (909), Expect = 7e-96
Identities = 211/390 (54%), Positives = 239/390 (61%), Gaps = 3/390 (0%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 180
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 181 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 360
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GT V PGHT+
Sbjct: 361 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTLDGSDG---------- 510
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
+G G +S+ E ++ H+R D V S
Sbjct: 511 -------SGPNGDSQSSVESLRK----------HLRADNFTQQQLEALD----RVFERPS 627
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
V +H++++ ++ L AL + + + S S P +T G
Sbjct: 628 YPDVFQTAEHIKSEQASEYSLPALTPGLDEVKSSLSASGNADLGSNVSGPQSYPVVT-GR 804
Query: 300 DEVKSSLSASANPELGSNV--SGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTL 357
D +S++ P +V +G +YP ++TL G
Sbjct: 805 D-----MSSTTLPGYPPHVPPTGQGSYP--------TSTLAG------------------ 891
Query: 358 AGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
MVPGSEFSGNPYSHPQYT YNEAWRFSN
Sbjct: 892 --MVPGSEFSGNPYSHPQYTTYNEAWRFSN 975
>emb|AJ000666.1|XLAJ666 Xenopus laevis mRNA for paired box protein, clone pBS.29
Length = 1189
Score = 344 bits (883), Expect = 8e-93
Identities = 209/395 (52%), Positives = 237/395 (59%), Gaps = 8/395 (2%)
Frame = +1
Query: 1 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MDMHCKADPFSAMH HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 180
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIA+YKRQNPTMFAWEIR +LL
Sbjct: 181 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLA 360
Query: 120 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXND 179
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD GT V+ PGHT+
Sbjct: 361 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPD--GTPVSTPGHTLDGSDG---------- 504
Query: 180 PVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 239
+G G +S+ E ++ H+R D V S
Sbjct: 505 -------SGPNGDSQSSVESLRK----------HLRADNFTQQQLEALD----RVFERPS 621
Query: 240 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 299
V +H++++ ++ L AL + + + S S P +T G
Sbjct: 622 YPDVFQTAEHIKSEQASEYSLPALTPGLDEVKSSLSASGNADLGSNVSGPQSYPVVT-GR 798
Query: 300 DEVKSSLSASANPELGSNV--SGTQTYPVVTGRDMTSTTLPGYPPHLPPTG-----QGSY 352
D +S++ P +V +G +YP T M T + P S
Sbjct: 799 D-----MSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGTNVSVHHSVQPVECCSCLSSSK 963
Query: 353 PTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
P GSEFSGNPYSHPQYT YNEAWRFSN
Sbjct: 964 PCLFHCRTGSGSEFSGNPYSHPQYTTYNEAWRFSN 1068
>ref|NM_013952.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8C,
mRNA
Length = 1451
Score = 344 bits (883), Expect = 8e-93
Identities = 191/334 (57%), Positives = 225/334 (67%), Gaps = 4/334 (1%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 188 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 367
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 368 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 547
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 548 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 727
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 728 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 838
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++L+ S P
Sbjct: 839 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP- 1012
Query: 314 LGSNVSGTQTYPVVTGRD--MTSTTLPGYPPHLP 345
LG N+S QTYPVV + S + PG P +P
Sbjct: 1013LGRNLSTHQTYPVVAAPPFWICSKSAPGSRPSMP 1114
Score = 92.0 bits (227), Expect = 9e-17
Identities = 53/132 (40%), Positives = 70/132 (52%), Gaps = 13/132 (9%)
Frame = +1
Query: 269 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYP--- 325
R +PD FQ H Q P +P L SS ++GS V +P
Sbjct: 979 REGHPDPFQ---HATGAQ------PLDSPDLPRGGSSALLDLQ-QVGSGVPPFNAFPHAA 1128
Query: 326 ----------VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 375
+++GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H
Sbjct: 1129 SVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTP 1308
Query: 376 YTAYNEAWRFSN 387
Y++Y+EAW F N
Sbjct: 1309 YSSYSEAWGFPN 1344
>gb|S77904.1|S77904 Pax (PAX8c)=paired box {alternatively spliced} [human, thyroid,
kidney and Wilms' tumors, mRNA, 1451 nt]
Length = 1451
Score = 344 bits (883), Expect = 8e-93
Identities = 191/334 (57%), Positives = 225/334 (67%), Gaps = 4/334 (1%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 188 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 367
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 368 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 547
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 548 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 727
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 728 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 838
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++L+ S P
Sbjct: 839 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP- 1012
Query: 314 LGSNVSGTQTYPVVTGRD--MTSTTLPGYPPHLP 345
LG N+S QTYPVV + S + PG P +P
Sbjct: 1013LGRNLSTHQTYPVVAAPPFWICSKSAPGSRPSMP 1114
Score = 92.0 bits (227), Expect = 9e-17
Identities = 53/132 (40%), Positives = 70/132 (52%), Gaps = 13/132 (9%)
Frame = +1
Query: 269 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYP--- 325
R +PD FQ H Q P +P L SS ++GS V +P
Sbjct: 979 REGHPDPFQ---HATGAQ------PLDSPDLPRGGSSALLDLQ-QVGSGVPPFNAFPHAA 1128
Query: 326 ----------VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQ 375
+++GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H
Sbjct: 1129 SVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTP 1308
Query: 376 YTAYNEAWRFSN 387
Y++Y+EAW F N
Sbjct: 1309 YSSYSEAWGFPN 1344
>emb|X83592.1|CCPAX8G C.canis Pax8g mRNA
Length = 1242
Score = 332 bits (852), Expect = 3e-89
Identities = 189/334 (56%), Positives = 223/334 (66%), Gaps = 7/334 (2%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 28 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 207
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 208 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 387
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 388 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 567
Query: 194 RSNGE-KRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA 252
+ + KRK ++ + +D S+ DSQS RKHLR
Sbjct: 568 QPGSDSKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRT 678
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPAL-TPGLDEVKSSLSASAN 311
D F+Q LE L+ FER YP+ + + H K EQG Y LP L + LD+ K++L+ S
Sbjct: 679 DAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSAALDDGKATLTPSNT 855
Query: 312 PELGSNVSGTQTYPVVTGRDM---TSTTLPGYPP 342
P LG N+S QTYPVV + + PG P
Sbjct: 856 P-LGRNLSTHQTYPVVAAPPFWICSKSAAPGSQP 954
Score = 61.6 bits (148), Expect = 1e-07
Identities = 26/49 (53%), Positives = 36/49 (73%)
Frame = +3
Query: 326 VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHP 374
+++GR+M TLPGYPPH+P +GQGSY +S +AGMV GS + + S P
Sbjct: 1026 LLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSPYYYSSTSRP 1172
>gb|AF053762.1|AF053762 Branchiostoma floridae paired box protein Pax-2 alpha isoform mRNA,
complete cds
Length = 1658
Score = 330 bits (847), Expect = 1e-88
Identities = 213/422 (50%), Positives = 244/422 (57%), Gaps = 54/422 (12%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGGV+VNGRPLPDVVR RIVELAHQGVRPCDISRQLRVSHGCVSKIL RYYETG
Sbjct: 126 HGGVNQLGGVYVNGRPLPDVVRHRIVELAHQGVRPCDISRQLRVSHGCVSKILRRYYETG 305
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL EGICDNDTVPSVSSIN
Sbjct: 306 SIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 485
Query: 136 RIIRTKV-----QQPFHP--TPDGAGT----GVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
RI+R K Q P P +P GAGT G A G + SY
Sbjct: 486 RIVRNKAAEKAKQSPHSPQQSPQGAGTPNSVGPMASGPVATSASNNAPGSDSAQNG-SSY 662
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVD 244
SINGILGI SN EK KRE + T PA + G + NGD +
Sbjct: 663 SINGILGIHHSNPEKVKREG-DRETGPA----------------MENGMIVNGDPEQ--- 782
Query: 245 SLRKHLRADTFTQQQLEALDRVFERPSYP-DVFQASEHIKSEQGNEYSLPALTPGLDEVK 303
+ TFT QLEAL++ F R YP D F + N+ L + +VK
Sbjct: 783 ------KRSTFTPDQLEALEQAFNRGHYPTDPFN-----RDNMSNKVDLSQTR--VQDVK 923
Query: 304 SSLSASAN--------PELGSN-----VSGTQTYPVVTGRDM--TSTTLPGYPPHLPP-- 346
S+S S P + + V G V GRDM ++TLPGYPPH PP
Sbjct: 924 PSISCSTTSVAMTDTAPHVPTGHYPVAVPGLPQSAVTPGRDMRDMNSTLPGYPPHAPPSN 1103
Query: 347 -TGQGSYPTSTLA-GMVP----------------------GSEFSGNPYSHPQYTA-YNE 381
+GQ YP++T+A G VP S+FSG PY+H QY++ YN+
Sbjct: 1104LSGQTGYPSNTMATGQVPPIVLPSASNSYSSASTMSGSDYSSQFSGVPYTHAQYSSHYND 1283
Query: 382 AW 383
AW
Sbjct: 1284AW 1289
>emb|AJ000669.1|XLAJ669 Xenopus laevis mRNA for paired box protein, clone pBS.30*
Length = 790
Score = 323 bits (827), Expect = 2e-86
Identities = 154/164 (93%), Positives = 158/164 (95%)
Frame = +1
Query: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 60
MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
Sbjct: 1 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 180
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSK+LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIR +LL
Sbjct: 181 HGCVSKVLGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAV 360
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTI 164
GICDNDTVPSVSSINRIIRTKVQQPFHPTPDG+GT V PGHT+
Sbjct: 361 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGSGTPVGTPGHTL 492
Score = 129 bits (323), Expect = 7e-28
Identities = 56/59 (94%), Positives = 58/59 (97%)
Frame = +1
Query: 329 GRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
GRDM+STTLPGYPPH+PPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT YNEAWRFSN
Sbjct: 493 GRDMSSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSN 669
>ref|NM_013953.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8D,
mRNA
Length = 1220
Score = 320 bits (819), Expect = 2e-85
Identities = 180/342 (52%), Positives = 215/342 (62%), Gaps = 3/342 (0%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 188 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 367
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 368 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 547
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 548 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 727
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 728 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 838
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
F+Q LE L+ FER YP+ + + H K EQG + P P +A P
Sbjct: 839 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGERWWGPR-CPDTHPTSPPADRAAMPP 1015
Query: 314 LGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQ-GSYPT 354
L S +++ + +P P PPT + G+ PT
Sbjct: 1016LPSQ---------AWWQEVNTLAMPMATPPTPPTARPGASPT 1114
Score = 89.7 bits (221), Expect = 4e-16
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = +1
Query: 329 GRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAW F N
Sbjct: 937 GREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWGFPN 1113
>gb|S77905.1|S77905 Pax (PAX8d)=paired box {alternatively spliced} [human, thyroid,
kidney and Wilms' tumors, mRNA, 1220 nt]
Length = 1220
Score = 320 bits (819), Expect = 2e-85
Identities = 180/342 (52%), Positives = 215/342 (62%), Gaps = 3/342 (0%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 188 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 367
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 368 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 547
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 548 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 727
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 728 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 838
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
F+Q LE L+ FER YP+ + + H K EQG + P P +A P
Sbjct: 839 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGERWWGPR-CPDTHPTSPPADRAAMPP 1015
Query: 314 LGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQ-GSYPT 354
L S +++ + +P P PPT + G+ PT
Sbjct: 1016LPSQ---------AWWQEVNTLAMPMATPPTPPTARPGASPT 1114
Score = 89.7 bits (221), Expect = 4e-16
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = +1
Query: 329 GRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN 387
GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAW F N
Sbjct: 937 GREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWGFPN 1113
>ref|NM_013992.1| Homo sapiens paired box gene 8 (PAX8), transcript variant PAX8E,
mRNA
Length = 1118
Score = 316 bits (809), Expect = 3e-84
Identities = 169/285 (59%), Positives = 197/285 (68%), Gaps = 3/285 (1%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 188 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 367
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 368 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 547
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 548 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 727
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 728 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 838
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQG-NEYSLPALTP 297
F+Q LE L+ FER YP+ + + H K EQ N ++P TP
Sbjct: 839 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQEVNTLAMPMATP 973
Score = 40.0 bits (92), Expect = 0.40
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 363 GSEFSGNPYSHPQYTAYNEAWRFSN 387
GSE+SGN Y H Y++Y+EAW F N
Sbjct: 937 GSEYSGNAYGHTPYSSYSEAWGFPN 1011
>gb|S77906.2|S77906 Pax (PAX8e)=paired box {alternatively spliced} [human, thyroid,
kidney and Wilms' tumors, mRNA Partial, 1031 nt]
Length = 1118
Score = 316 bits (809), Expect = 3e-84
Identities = 169/285 (59%), Positives = 197/285 (68%), Gaps = 3/285 (1%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 188 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 367
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL EG+CDNDTVPSVSSIN
Sbjct: 368 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 547
Query: 136 RIIRTKVQQPFH-PTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIP 193
RIIRTKVQQPF+ P T +PGHT+ +D +GS YSING+LGI
Sbjct: 548 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIA 727
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ +KRK ++ + +D S+ DSQS RKHLR D
Sbjct: 728 QPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSGPRKHLRTD 838
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQG-NEYSLPALTP 297
F+Q LE L+ FER YP+ + + H K EQ N ++P TP
Sbjct: 839 AFSQHHLEPLECPFERQHYPEAYASPSHTKGEQEVNTLAMPMATP 973
Score = 40.0 bits (92), Expect = 0.40
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 363 GSEFSGNPYSHPQYTAYNEAWRFSN 387
GSE+SGN Y H Y++Y+EAW F N
Sbjct: 937 GSEYSGNAYGHTPYSSYSEAWGFPN 1011
>gb|AF179301.1|AF179301 Xenopus laevis Pax-8 DNA-binding transcription factor (Pax-8) mRNA,
complete cds
Length = 1398
Score = 310 bits (795), Expect = 1e-82
Identities = 193/434 (44%), Positives = 243/434 (55%), Gaps = 64/434 (14%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 79 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 258
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIR +LL +G+CDNDTVPSVSSIN
Sbjct: 259 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLTDGVCDNDTVPSVSSIN 438
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIPR 194
RIIRTKVQQ F+ P + +PG T+ +D +GS YSI+G+LGI +
Sbjct: 439 RIIRTKVQQLFN-LPMESCVKSLSPGQTLIPSSTVTPPESPHSDSLGSTYSISGLLGITQ 615
Query: 195 SNGE-KRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRAD 253
+ + KRK ++ + E + DSQ V RK LR +
Sbjct: 616 PSADGKRKLDDSD-----------------------QESCRLSIDSQGSVGISRKQLRTE 726
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPE 313
+ L+AL+ F+R +P+ + +S H K+EQ Y+LP L LD+ KSSL+ S N
Sbjct: 727 AYGHHPLDALECHFQRQHFPESYSSSTHSKTEQA-LYTLPLLNISLDDGKSSLT-STNTT 900
Query: 314 LGSNVSGTQTYPVV--------------------TGRDMTSTTL------------PGYP 341
+G N+S Q Y + T + S T P +
Sbjct: 901 IGRNLSTHQGYSALSEFTAFSIKQEASDSSSASSTPSSLCSPTFLDLQPINSGCSAPSFS 1080
Query: 342 PHLPPTGQGSYPT----------STLAGMVP--------------------GSEFSGNPY 371
P+ G + + +TL G P G ++S N Y
Sbjct: 1081AFSHPSVYGQFTSHVASGRDVVGATLPGYPPHIPSGQGNYASSAIAGMVAAGGDYSANAY 1260
Query: 372 SHPQYTAYNEAWRF 385
SH Y AY ++WRF
Sbjct: 1261SHGAYAAYGDSWRF 1302
>gb|AF072549.1|AF072549 Danio rerio transcription factor (Pax8) mRNA, partial cds
Length = 1290
Score = 296 bits (758), Expect = 2e-78
Identities = 194/436 (44%), Positives = 235/436 (53%), Gaps = 75/436 (17%)
Frame = +1
Query: 27 VNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSK 86
VNGRPLP+V+RQRIV++AHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSK
Sbjct: 1 VNGRPLPEVIRQRIVDMAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSK 180
Query: 87 PKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRIIRTKVQQPF 146
PKVATPKVV+KIAEYKRQNPTMFAWEIR +LL EG+CD DTVPSVSSINRIIRTKVQQPF
Sbjct: 181 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDGDTVPSVSSINRIIRTKVQQPF 360
Query: 147 HPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-YSINGILGIPRSNGE-KRKREE 204
+ D G +PGHT+ +D +GS YSING+LGI ++ + KR ++
Sbjct: 361 NLPLDTKG---LSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGITQTTADGKRGHDD 531
Query: 205 VEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALD 264
+ E + DSQ RK LR + F ALD
Sbjct: 532 SD-----------------------QESCRHSVDSQGSGGGARKQLRTEHFPS---AALD 633
Query: 265 RVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASAN------------- 311
FER D F S K+EQ Y L + PGLDE K + S S N
Sbjct: 634 CGFERHYSSDSFSQS---KAEQ-QLYPLALMNPGLDEGKGASSISRNLAAHQGYAVVTEA 801
Query: 312 ---------PELGSNVSGTQTYP-VVTGR---DMTSTTLPGYPP---------------- 342
E+ V+ P +++G D+++ + P P
Sbjct: 802 LQPLPLCLKQEVSPEVNSLSPSPHIISGSAFLDLSAISSPSSAPVASSCGSAHLSHGFSS 981
Query: 343 ---HLPPTGQGSYP----------------------------TSTLAGMVPGSEFSGNPY 371
H P GQ S P +ST+AGMV E++G Y
Sbjct: 982 FSHHAPVHGQFSSPSLMAGREVASSMLPGYPPHIPTAQTGFSSSTIAGMVSAPEYTGQSY 1161
Query: 372 SHPQYTAYNEAWRFSN 387
SHP Y++Y+EAWRF+N
Sbjct: 1162SHPAYSSYSEAWRFTN 1209
>gb|AF053763.1|AF053763 Branchiostoma floridae paired box protein Pax-2 beta isoform mRNA,
complete cds
Length = 2742
Score = 294 bits (753), Expect = 9e-78
Identities = 192/375 (51%), Positives = 216/375 (57%), Gaps = 13/375 (3%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGGV+VNGRPLPDVVR RIVELAHQGVRPCDISRQLRVSHGCVSKIL RYYETG
Sbjct: 126 HGGVNQLGGVYVNGRPLPDVVRHRIVELAHQGVRPCDISRQLRVSHGCVSKILRRYYETG 305
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIR +LL EGICDNDTVPSVSSIN
Sbjct: 306 SIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 485
Query: 136 RIIRTKV-----QQPFHP--TPDGAGT----GVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
RI+R K Q P P +P GAGT G A G + SY
Sbjct: 486 RIVRNKAAEKAKQSPHSPQQSPQGAGTPNSVGPMASGPVATSASNNAPGSDSAQNG-SSY 662
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVD 244
SINGILGI SN EK KRE + T PA + G + NGD +
Sbjct: 663 SINGILGIHHSNPEKVKREG-DRETGPA----------------MENGMIVNGDPEQ--- 782
Query: 245 SLRKHLRADTFTQQQLEALDRVFERPSYP-DVFQASEHIKSEQGNEYSLPALTPGLDEVK 303
+ TFT QLEAL++ F R YP D F + N+ L + +VK
Sbjct: 783 ------KRSTFTPDQLEALEQAFNRGHYPTDPFN-----RDNMSNKVDLSQTR--VQDVK 923
Query: 304 SSLSASANPELGSNVSGTQTYP-VVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
S+S S ++V+ T T P V TG YP +P T S + + P
Sbjct: 924 PSISCST-----TSVAMTDTAPHVPTGH---------YPVAVPATTPPSASAPSNSASPP 1061
Query: 363 GSEFSGNPYSHPQYT 377
GS S P P T
Sbjct: 1062GSAKSSEPSPSPTAT 1106
>gb|AF016884.1|AF016884 Paracentrotus lividus paired box protein (suPax258) mRNAs, complete
cds
Length = 2506
Score = 270 bits (690), Expect = 2e-70
Identities = 178/405 (43%), Positives = 227/405 (55%), Gaps = 25/405 (6%)
Frame = +2
Query: 1 MDMHCKAD-PFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 59
MD H +A A HGGVNQLGGVFVNGRPLPDVVRQRIV+LAH GVRPCDISRQLRV
Sbjct: 692 MDFHRRATLTHGACKSHGGVNQLGGVFVNGRPLPDVVRQRIVDLAHSGVRPCDISRQLRV 871
Query: 60 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
SHGCVSKILGRYYETGSI+PGVIGGSKPKVATPKVV KIA+YKRQNPTMFAWEIR +LL
Sbjct: 872 SHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVSKIADYKRQNPTMFAWEIRDRLLA 1051
Query: 120 EGICDNDTVPSVSSINRIIRTKV--------QQPFHPTPDGAGTGVTAPGHTIXXXXXXX 171
EG+C+ D VPSVSSINRI+R K+ Q PT + + PG
Sbjct: 1052 EGVCEKDNVPSVSSINRIVRNKLGDKKLDEHQTGCLPTSGSPPSSLIHPG---------- 1201
Query: 172 XXXXXXNDPV---GSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRD 228
DP SYSINGILGIP+ + KR + E+Y D GG G
Sbjct: 1202 -------DPERTGSSYSINGILGIPK----QEKRIKGELYPD-----GGPG--------- 1306
Query: 229 VSEGSVPNGDSQSGVDSLRKHLRADT--FTQQQLEALDRVFERPSYPDVFQASEHIKSEQ 286
P+G S + RK ++ ++ F+ Q+EA+++ YPDV++ + I +
Sbjct: 1307 -----QPDGQSVL-AEEARKMMKTNSGAFSPHQIEAMEKACNPSLYPDVYR--KDIAQDG 1462
Query: 287 GNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPH-LP 345
+ +P +SA+ +++ + + V +G + + P H
Sbjct: 1463 RGQVGMPI-------------SSASEYHHAHLEAQRHHAVTSGYHQSGQSRDMAPLHGYS 1603
Query: 346 PTGQGSYPTSTLAGMVPGSEF--SGNPYSH--------PQYTAYN 380
+ QG Y + ++AG+VP G YSH Q++ YN
Sbjct: 1604 ASPQGGYSSGSVAGIVPPLVLPPGGGSYSHSGREGEYSSQFSQYN 1738
>gb|AF241310.1|AF241310 Acropora millepora transcription factor PaxB (PaxB) mRNA, complete
cds
Length = 3677
Score = 246 bits (628), Expect = 3e-63
Identities = 146/280 (52%), Positives = 167/280 (59%), Gaps = 8/280 (2%)
Frame = +1
Query: 5 CKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCV 64
C + HGGVNQLGG+FVNGRPLPDVVR RIV+LA GVRPCDISRQLRVSHGCV
Sbjct: 145 CSGMAHTTKQGHGGVNQLGGLFVNGRPLPDVVRSRIVDLAQSGVRPCDISRQLRVSHGCV 324
Query: 65 SKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICD 124
SKIL R+YETGSIKPGVIGGSKPKVAT VV+KIAEYKR NPTMFAWEIR +LL EG+C
Sbjct: 325 SKILCRFYETGSIKPGVIGGSKPKVATGPVVNKIAEYKRNNPTMFAWEIRDRLLSEGVCS 504
Query: 125 NDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
D VPSVSSINRI+R ++ G V GH + P SY
Sbjct: 505 TDNVPSVSSINRIVRNRINSSESKIAPGKADEVINDGH----DGNLKVEPSSIHMPRSSY 672
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNG-DSQSGV 243
SINGILG+ V + P R H V + S G D Q G
Sbjct: 673 SINGILGMAAQ----------PVISVPPSKR----KHSVESAESTGSHSEEEGHDGQVGA 810
Query: 244 DS---LRKH----LRADTFTQQQLEALDRVFERPSYPDVF 276
S LR H + TF+ +Q+E L++ FE+ YPDVF
Sbjct: 811 GSPTDLRGHKIVRRQRTTFSGEQIEQLEKTFEKTHYPDVF 930
>emb|AJ251932.1|PMA251932 Phallusia mammillata mRNA for transcription factor (pax258A gene)
Length = 2997
Score = 234 bits (597), Expect = 1e-59
Identities = 120/185 (64%), Positives = 137/185 (73%), Gaps = 4/185 (2%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGGV+VNGRPLPD +RQ+IV+ AH GVRPCDI+RQLRVSHGCVSKIL RYYETG
Sbjct: 194 HGGINQLGGVYVNGRPLPDQIRQQIVDQAHHGVRPCDIARQLRVSHGCVSKILARYYETG 373
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATPKVV+KI EYKRQNPTMFAWEIR +LL E ICD D VPSVSSIN
Sbjct: 374 SIRPGVIGGSKPKVATPKVVEKICEYKRQNPTMFAWEIRDRLLGEQICDQDNVPSVSSIN 553
Query: 136 RIIRTK----VQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG 191
RI+R K + H AG G T+ G +D SY+ING+LG
Sbjct: 554 RIVRNKAAENAKNHHHLAHVAAGMGQTSLG---MSSSCVPSSMMVEHDVRNSYTINGLLG 724
Query: 192 IPRSN 196
+ +N
Sbjct: 725 LQATN 739
>dbj|AB006675.1|AB006675 Halocynthia roretzi HrPax-258 mRNA, complete cds
Length = 2036
Score = 231 bits (589), Expect = 9e-59
Identities = 119/178 (66%), Positives = 135/178 (74%), Gaps = 1/178 (0%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGGV+VNGRPLPD VRQ IV+LAHQGVRPCDI+RQLRVSHGCVSKIL RYYETG
Sbjct: 257 HGGINQLGGVYVNGRPLPDPVRQTIVDLAHQGVRPCDIARQLRVSHGCVSKILARYYETG 436
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKPGVIGGSKPKVATP+VV+KI EYKRQNPTMFAWEIR +LL E ICD + VPSVSSIN
Sbjct: 437 SIKPGVIGGSKPKVATPRVVEKICEYKRQNPTMFAWEIRDRLLVECICDTENVPSVSSIN 616
Query: 136 RIIRTK-VQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGI 192
RI+R K ++ H + + G+ + + SYSINGILGI
Sbjct: 617 RIVRDKAAEKSKHHAMEVSSVGIPSSACILDGGESQRGT---------SYSINGILGI 763
>emb|AJ249563.1|PCA249563 Podocoryne carnea mRNA for paired box protein, transcription factor
(pax-B gene)
Length = 2725
Score = 226 bits (577), Expect = 2e-57
Identities = 122/201 (60%), Positives = 141/201 (69%), Gaps = 18/201 (8%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGGVFVNGRPLP+ VR++IVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 409 HGGVNQLGGVFVNGRPLPEPVRRKIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 588
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATP VV KIAEYK NPTMFAWEIR +LL + ICD ++VPSVSSIN
Sbjct: 589 SIRPGVIGGSKPKVATPSVVTKIAEYKIHNPTMFAWEIRERLLNDQICDVESVPSVSSIN 768
Query: 136 RIIRTK------VQQPFHPTPDGAGTGV-TAPGHTIXXXXXXXXXXXXXNDP-------- 180
RI+R + +++P P G + PG P
Sbjct: 769 RIVRNRLGSGSTLKEPSSPGSPGESNMIKIEPGQHAGLFGYHGMPIQLGPSPGTFAHLPR 948
Query: 181 -VGSYSINGILGI--PRSNGE 198
+ YS+NGILGI P+ +G+
Sbjct: 949 SMAGYSVNGILGIAVPQGHGQ 1011
>gb|AF016888.1|AF016888 Drosophila melanogaster paired box protein (dPax258) mRNA, partial
cds
Length = 2652
Score = 224 bits (571), Expect = 1e-56
Identities = 109/129 (84%), Positives = 113/129 (87%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGGVFVNGRPLPDVVRQRIVELAH GVRPCDISRQLRVSHGCVSKIL RYYETG
Sbjct: 3 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETG 182
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
S K GVIGGSKPKVATP VVD IA YKR+NPTMFAWEIR +LL E IC D VPSVSSIN
Sbjct: 183 SFKAGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSIN 362
Query: 136 RIIRTKVQQ 144
RI+R K +
Sbjct: 363 RIVRNKAAE 389
>ref|NM_079894.1| Drosophila melanogaster shaven (sv), mRNA
Length = 4673
Score = 224 bits (571), Expect = 1e-56
Identities = 109/129 (84%), Positives = 113/129 (87%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGGVFVNGRPLPDVVRQRIVELAH GVRPCDISRQLRVSHGCVSKIL RYYETG
Sbjct: 798 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETG 977
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
S K GVIGGSKPKVATP VVD IA YKR+NPTMFAWEIR +LL E IC D VPSVSSIN
Sbjct: 978 SFKAGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSIN 1157
Query: 136 RIIRTKVQQ 144
RI+R K +
Sbjct: 1158RIVRNKAAE 1184
>gb|AF010256.1|AF010256 Drosophila melanogaster sparkling protein (spa) mRNA, complete cds
Length = 4672
Score = 224 bits (571), Expect = 1e-56
Identities = 109/129 (84%), Positives = 113/129 (87%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGGVFVNGRPLPDVVRQRIVELAH GVRPCDISRQLRVSHGCVSKIL RYYETG
Sbjct: 798 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETG 977
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
S K GVIGGSKPKVATP VVD IA YKR+NPTMFAWEIR +LL E IC D VPSVSSIN
Sbjct: 978 SFKAGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSIN 1157
Query: 136 RIIRTKVQQ 144
RI+R K +
Sbjct: 1158RIVRNKAAE 1184
>gb|M77844.1|HUMOCLHMB H.sapiens oculorhombin (aniridia) mRNA, complete cds
Length = 1643
Score = 224 bits (571), Expect = 1e-56
Identities = 145/376 (38%), Positives = 191/376 (50%), Gaps = 24/376 (6%)
Frame = +3
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGR
Sbjct: 360 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGR 539
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
YYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PS
Sbjct: 540 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 719
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSINR++R + DG G Y +
Sbjct: 720 VSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSVP 869
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G P +G +++ GGG +S + ++Q + RK
Sbjct: 870 GQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQMRLQLKRKLQ 995
Query: 251 RADT-FTQQQLEALDRVFERPSYPDVF-----------------------QASEHIKSEQ 286
R T FTQ+Q+EAL++ FER YPDVF +A + +
Sbjct: 996 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 1175
Query: 287 GNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPP 346
N+ + TP + SS S S + + ++ + +T T L LPP
Sbjct: 1176RNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGLTDTALTNTYSALPP 1355
Query: 347 TGQGSYPTSTLAGMVP 362
P+ T+A +P
Sbjct: 1356-----MPSFTMANNLP 1388
>ref|NM_000280.1| Homo sapiens paired box gene 6 (aniridia, keratitis) (PAX6), mRNA
Length = 1698
Score = 223 bits (568), Expect = 3e-56
Identities = 145/376 (38%), Positives = 190/376 (49%), Gaps = 24/376 (6%)
Frame = +1
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGR
Sbjct: 415 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGR 594
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
YYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PS
Sbjct: 595 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 774
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSINR++R + DG G Y +
Sbjct: 775 VSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSVP 924
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G P +G +++ GGG +S + ++Q + RK
Sbjct: 925 GQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQMRLQLKRKLQ 1050
Query: 251 RADT-FTQQQLEALDRVFERPSYPDVF-----------------------QASEHIKSEQ 286
R T FTQ+Q+EAL++ FER YPDVF +A + +
Sbjct: 1051RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 1230
Query: 287 GNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPP 346
N+ + TP + SS S S + + ++ + T T L LPP
Sbjct: 1231RNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPP 1410
Query: 347 TGQGSYPTSTLAGMVP 362
P+ T+A +P
Sbjct: 1411-----MPSFTMANNLP 1443
>gb|M93650.1|HUMPAX6AN Human paired box gene (PAX6) homologue, complete cds
Length = 1698
Score = 223 bits (568), Expect = 3e-56
Identities = 145/376 (38%), Positives = 190/376 (49%), Gaps = 24/376 (6%)
Frame = +1
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGR
Sbjct: 415 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGR 594
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
YYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PS
Sbjct: 595 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 774
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSINR++R + DG G Y +
Sbjct: 775 VSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSVP 924
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G P +G +++ GGG +S + ++Q + RK
Sbjct: 925 GQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQMRLQLKRKLQ 1050
Query: 251 RADT-FTQQQLEALDRVFERPSYPDVF-----------------------QASEHIKSEQ 286
R T FTQ+Q+EAL++ FER YPDVF +A + +
Sbjct: 1051RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 1230
Query: 287 GNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPP 346
N+ + TP + SS S S + + ++ + T T L LPP
Sbjct: 1231RNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPP 1410
Query: 347 TGQGSYPTSTLAGMVP 362
P+ T+A +P
Sbjct: 1411-----MPSFTMANNLP 1443
>gb|BC011953.1|BC011953 Homo sapiens, Similar to paired box gene 6 (aniridia, keratitis),
clone MGC:17209 IMAGE:3880468, mRNA, complete cds
Length = 1631
Score = 223 bits (568), Expect = 3e-56
Identities = 145/376 (38%), Positives = 190/376 (49%), Gaps = 24/376 (6%)
Frame = +3
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGR
Sbjct: 339 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGR 518
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
YYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PS
Sbjct: 519 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 698
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSINR++R + DG G Y +
Sbjct: 699 VSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSVP 848
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G P +G +++ GGG +S + ++Q + RK
Sbjct: 849 GQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQMRLQLKRKLQ 974
Query: 251 RADT-FTQQQLEALDRVFERPSYPDVF-----------------------QASEHIKSEQ 286
R T FTQ+Q+EAL++ FER YPDVF +A + +
Sbjct: 975 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 1154
Query: 287 GNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPP 346
N+ + TP + SS S S + + ++ + T T L LPP
Sbjct: 1155RNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPP 1334
Query: 347 TGQGSYPTSTLAGMVP 362
P+ T+A +P
Sbjct: 1335-----MPSFTMANNLP 1367
>gb|AY047583.1| Homo sapiens paired box protein PAX6 (PAX6) mRNA, complete cds
Length = 1399
Score = 223 bits (568), Expect = 3e-56
Identities = 145/376 (38%), Positives = 190/376 (49%), Gaps = 24/376 (6%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGR
Sbjct: 128 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGR 307
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
YYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PS
Sbjct: 308 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 487
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSINR++R + DG G Y +
Sbjct: 488 VSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSVP 637
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G P +G +++ GGG +S + ++Q + RK
Sbjct: 638 GQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQMRLQLKRKLQ 763
Query: 251 RADT-FTQQQLEALDRVFERPSYPDVF-----------------------QASEHIKSEQ 286
R T FTQ+Q+EAL++ FER YPDVF +A + +
Sbjct: 764 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 943
Query: 287 GNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPP 346
N+ + TP + SS S S + + ++ + T T L LPP
Sbjct: 944 RNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPP 1123
Query: 347 TGQGSYPTSTLAGMVP 362
P+ T+A +P
Sbjct: 1124-----MPSFTMANNLP 1156
>gb|AF169415.1|AF169415 Ambystoma mexicanum paired-box transcription factor -- isoform
(Pax6) mRNA, partial cds
Length = 1812
Score = 223 bits (567), Expect = 3e-56
Identities = 130/273 (47%), Positives = 160/273 (57%), Gaps = 12/273 (4%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 7 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 186
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 187 SIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 366
Query: 136 RIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
R++R + DG GT T PG Y
Sbjct: 367 RVLRNLASEKQQMGADGMYDKLRMLNGQTGTWGTRPGW---------------------Y 483
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVD 244
+ G P +G +++ GGG +S + ++Q +
Sbjct: 484 PGTSVPGQPTPDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQMRLQ 609
Query: 245 SLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 610 LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 708
>gb|AF169414.1|AF169414 Ambystoma mexicanum paired-box transcription factor -+ isoform
(Pax6) mRNA, partial cds
Length = 1963
Score = 223 bits (567), Expect = 3e-56
Identities = 130/273 (47%), Positives = 160/273 (57%), Gaps = 12/273 (4%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 7 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 186
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 187 SIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 366
Query: 136 RIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
R++R + DG GT T PG Y
Sbjct: 367 RVLRNLASEKQQMGADGMYDKLRMLNGQTGTWGTRPGW---------------------Y 483
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVD 244
+ G P +G +++ GGG +S + ++Q +
Sbjct: 484 PGTSVPGQPTPDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQMRLQ 609
Query: 245 SLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 610 LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 708
>emb|X70475.1|CCPAX C. coturnix mRNA for paired box and homeobox gene
Length = 2509
Score = 222 bits (566), Expect = 4e-56
Identities = 130/273 (47%), Positives = 159/273 (57%), Gaps = 12/273 (4%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 389 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 568
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 569 SIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 748
Query: 136 RIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
R++R + DG GT T PG Y
Sbjct: 749 RVLRNLASEKQQMGADGMYDKLRMLNGQTGTWGTRPGW---------------------Y 865
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVD 244
+ G P +G ++ GGG +S + ++Q +
Sbjct: 866 PGTSVPGQPAQDGCPQQ-------------EGGGE-----NTNSISSNGEDSDEAQMRLQ 991
Query: 245 SLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 992 LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 1090
>emb|X61389.1|BRPAXZFA B.rerio mRNA for Pax[zf-a]
Length = 2738
Score = 222 bits (566), Expect = 4e-56
Identities = 130/273 (47%), Positives = 160/273 (57%), Gaps = 12/273 (4%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 535 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 714
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 715 SIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 894
Query: 136 RIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
R++R + DG GT T PG Y
Sbjct: 895 RVLRNLASEKQQMGADGMYEKLRMLNGQTGTWGTRPGW---------------------Y 1011
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVD 244
+ G P +G ++ GGG + +S + ++Q +
Sbjct: 1012PGTSVPGQPNQDGCQQS--------------DGGGEN----TNSISSNGEDSDETQMRLQ 1137
Query: 245 SLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 1138LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 1236
>ref|NM_013001.1| Rattus norvegicus Paired box homeotic gene 6 (Pax6), mRNA
Length = 2550
Score = 222 bits (565), Expect = 6e-56
Identities = 143/376 (38%), Positives = 189/376 (50%), Gaps = 24/376 (6%)
Frame = +3
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGR
Sbjct: 378 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGR 557
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
YYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PS
Sbjct: 558 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 737
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSINR++R + DG G Y +
Sbjct: 738 VSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSVP 887
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G P +G +++ + E +S + ++Q + RK
Sbjct: 888 GQPTQDGCQQQEGQGE------------------NTNSISSNGEDSDEAQMRLQLKRKLQ 1013
Query: 251 RADT-FTQQQLEALDRVFERPSYPDVF-----------------------QASEHIKSEQ 286
R T FTQ+Q+EAL++ FER YPDVF +A + +
Sbjct: 1014RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 1193
Query: 287 GNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPP 346
N+ + TP + SS S S + + ++ + T T L LPP
Sbjct: 1194RNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPP 1373
Query: 347 TGQGSYPTSTLAGMVP 362
P+ T+A +P
Sbjct: 1374-----MPSFTMANNLP 1406
>gb|U69644.1|RNU69644 Rattus norvegicus Pax-6 mRNA, comlete cds
Length = 2550
Score = 222 bits (565), Expect = 6e-56
Identities = 143/376 (38%), Positives = 189/376 (50%), Gaps = 24/376 (6%)
Frame = +3
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGR
Sbjct: 378 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGR 557
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
YYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PS
Sbjct: 558 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 737
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSINR++R + DG G Y +
Sbjct: 738 VSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRPGWYPGTSVP 887
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G P +G +++ + E +S + ++Q + RK
Sbjct: 888 GQPTQDGCQQQEGQGE------------------NTNSISSNGEDSDEAQMRLQLKRKLQ 1013
Query: 251 RADT-FTQQQLEALDRVFERPSYPDVF-----------------------QASEHIKSEQ 286
R T FTQ+Q+EAL++ FER YPDVF +A + +
Sbjct: 1014RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 1193
Query: 287 GNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPP 346
N+ + TP + SS S S + + ++ + T T L LPP
Sbjct: 1194RNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPP 1373
Query: 347 TGQGSYPTSTLAGMVP 362
P+ T+A +P
Sbjct: 1374-----MPSFTMANNLP 1406
>gb|AF061252.1|AF061252 Danio rerio Pax-family transcription factor 6.2 (pax6.2) mRNA,
complete cds
Length = 1733
Score = 221 bits (562), Expect = 1e-55
Identities = 128/273 (46%), Positives = 159/273 (57%), Gaps = 12/273 (4%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 330 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 509
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 510 SIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 689
Query: 136 RIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
R++R + DG +GT T PG Y
Sbjct: 690 RVLRNLASEKQQMGADGMYDKLRMLNGQSGTWGTRPGW---------------------Y 806
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVD 244
+ G P +G +++ E +S + ++Q +
Sbjct: 807 PGTSVPGQPNQDGCQQQDNGGE------------------NTNSISSNGEDSDETQMRLQ 932
Query: 245 SLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 933 LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 1031
>gb|AF260127.1|AF260127 Cladonema californicum transcription factor Pax-B1 (Pax-B1) mRNA,
partial cds
Length = 2248
Score = 219 bits (559), Expect = 3e-55
Identities = 117/207 (56%), Positives = 139/207 (66%), Gaps = 25/207 (12%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGG+FVNGRPLP+ +R++IV+L+ QGVRPCDISR+LRVSHGCVSKILGR+YETG
Sbjct: 201 HGGVNQLGGIFVNGRPLPEHIRRKIVDLSSQGVRPCDISRELRVSHGCVSKILGRFYETG 380
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATP V+ KIAEYK QNPTMFAWEIR LL + ICD ++VPSVSSIN
Sbjct: 381 SIRPGVIGGSKPKVATPSVIQKIAEYKTQNPTMFAWEIRECLLNDNICDAESVPSVSSIN 560
Query: 136 RIIRTKVQQPFH-----PTPD-------------------GAGTGVTAPGHTIXXXXXXX 171
RI+R ++ + P P G G+ +
Sbjct: 561 RIVRNRIGSKGNGGKNVPQPSMVENASVMKLESNEQTNIFGTAGGIPIQLSQLPGGFQTA 740
Query: 172 XXXXXXNDPVGSYSINGILG-IPRSNG 197
GSYSI+GILG IP+SNG
Sbjct: 741 LQTQIPRSGNGSYSISGILGIIPQSNG 821
>gb|AF260128.1|AF260128 Cladonema californicum transcription factor Pax-B mRNA, partial cds
Length = 2235
Score = 219 bits (559), Expect = 3e-55
Identities = 117/207 (56%), Positives = 139/207 (66%), Gaps = 25/207 (12%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGG+FVNGRPLP+ +R++IV+L+ QGVRPCDISR+LRVSHGCVSKILGR+YETG
Sbjct: 201 HGGVNQLGGIFVNGRPLPEHIRRKIVDLSSQGVRPCDISRELRVSHGCVSKILGRFYETG 380
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PGVIGGSKPKVATP V+ KIAEYK QNPTMFAWEIR LL + ICD ++VPSVSSIN
Sbjct: 381 SIRPGVIGGSKPKVATPSVIQKIAEYKTQNPTMFAWEIRECLLNDNICDAESVPSVSSIN 560
Query: 136 RIIRTKVQQPFH-----PTPD-------------------GAGTGVTAPGHTIXXXXXXX 171
RI+R ++ + P P G G+ +
Sbjct: 561 RIVRNRIGSKGNGGKNVPQPSMVENASVMKLESNEQTNIFGTAGGIPIQLSQLPGGFQTA 740
Query: 172 XXXXXXNDPVGSYSINGILG-IPRSNG 197
GSYSI+GILG IP+SNG
Sbjct: 741 LQTQIPRSGNGSYSISGILGIIPQSNG 821
>emb|Y07548.1|AFPAX6E24 Astyanax fasciatus mRNA for PAX-6 protein, clone epigean 2-4
Length = 2053
Score = 219 bits (557), Expect = 5e-55
Identities = 128/273 (46%), Positives = 157/273 (56%), Gaps = 12/273 (4%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 563 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 742
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR +LL EGIC ND +PSVSSIN
Sbjct: 743 SIRPRAIGGSKPRVATPEVVGKIAQFKRECPSIFAWEIRDRLLSEGICTNDNIPSVSSIN 922
Query: 136 RIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
R++R + DG GT T PG Y
Sbjct: 923 RVLRNLASEKQQMGADGMYEKLRMLNGQTGTWGTRPGW---------------------Y 1039
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVD 244
+ G P +G ++ E +S + ++Q +
Sbjct: 1040PGTSVPGQPNQDGCQQSDGGAE------------------NTNSISSNGEDSEEAQMRLQ 1165
Query: 245 SLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 1166LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 1264
>emb|Y07546.1|AFPAX6C23 Astyanax fasciatus mRNA for PAX-6 protein, clone cave 2-3
Length = 2065
Score = 219 bits (557), Expect = 5e-55
Identities = 128/273 (46%), Positives = 157/273 (56%), Gaps = 12/273 (4%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 575 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 754
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR +LL EGIC ND +PSVSSIN
Sbjct: 755 SIRPRAIGGSKPRVATPEVVGKIAQFKRECPSIFAWEIRDRLLSEGICTNDNIPSVSSIN 934
Query: 136 RIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSY 184
R++R + DG GT T PG Y
Sbjct: 935 RVLRNLASEKQQMGADGMYEKLRMLNGQTGTWGTRPGW---------------------Y 1051
Query: 185 SINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVD 244
+ G P +G ++ E +S + ++Q +
Sbjct: 1052PGTSVPGQPNQDGCQQSDGGAE------------------NTNSISSNGEDSEEAQMRLQ 1177
Query: 245 SLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 1178LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 1276
>gb|U96194.1|HLU96194 Hydra littoralis Pax-B mRNA, complete cds
Length = 1904
Score = 218 bits (555), Expect = 8e-55
Identities = 118/200 (59%), Positives = 136/200 (68%), Gaps = 18/200 (9%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPL + VR++IVELAHQGVRPCDISRQLRVSHGCVSKIL R+YETG
Sbjct: 300 HGGINQLGGTFVNGRPLIEPVRRKIVELAHQGVRPCDISRQLRVSHGCVSKILSRFYETG 479
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
S++PGVIGGSKPKVATP VV KI EYK+ NPTMFAWEIR +LL E ICD+D+VPSVSSIN
Sbjct: 480 SVRPGVIGGSKPKVATPSVVAKIQEYKQHNPTMFAWEIRDKLLSEQICDSDSVPSVSSIN 659
Query: 136 RIIRTKVQQPFHPT------------PD----GAGTGVTAPGHTIXXXXXXXXXXXXXND 179
RI+R ++ H + PD G+ I
Sbjct: 660 RIVRNRLGSSSHASMADLNSPLLKIDPDMTHYFVHPGLPIQIGAISTNFPGSIHAHLPRT 839
Query: 180 PVGSYSINGILG--IPRSNG 197
GSYSI+GILG +P S G
Sbjct: 840 TSGSYSISGILGMAVPSSQG 899
>emb|AJ223443.1|BFL223443 Branchiostoma floridae Pax6 gene (AmphiPax6), clone 4.2
Length = 3010
Score = 218 bits (554), Expect = 1e-54
Identities = 130/281 (46%), Positives = 168/281 (59%), Gaps = 6/281 (2%)
Frame = +2
Query: 2 DMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSH 61
D H + P A H GVNQLGGVFV GRPLPD RQ+IVELAHQG RPCDISR L+VS+
Sbjct: 617 DEHAQYSPVQADPGHSGVNQLGGVFVGGRPLPDSTRQKIVELAHQGARPCDISRLLQVSN 796
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR +LL EG
Sbjct: 797 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSEG 976
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPV 181
IC N+ +PSVSSINR++R + + +A + P
Sbjct: 977 ICTNENIPSVSSINRVLRNLAS----GEKNTLQSLQSADPQMLEKLRLLNGNAWPHPGPW 1144
Query: 182 GSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGL-HLVWTL---RDVSEGSVPNG 237
P++NG ++E G G L + TL +D +GS +
Sbjct: 1145PYPPSTAGAPPPQTNGNVTTKKE-----------GDGKLASQILTLHGYQDQGDGSNDDS 1291
Query: 238 DSQSGVDSLRKHLRAD--TFTQQQLEALDRVFERPSYPDVF 276
D L++ L+ + +FTQ+Q+EAL++ FER YPDVF
Sbjct: 1292DEAQARLRLKRKLQRNRSSFTQEQIEALEKEFERTHYPDVF 1414
>emb|AJ223442.1|BFL223442 Branchiostoma floridae Pax6 gene (AmphiPax6), clone 4.1
Length = 4041
Score = 218 bits (554), Expect = 1e-54
Identities = 129/270 (47%), Positives = 166/270 (60%), Gaps = 6/270 (2%)
Frame = +2
Query: 13 MHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 72
M RH GVNQLGGVFVNGRPLPD RQ+IVELAHQG RPCDISR L+VS+GCVSKILGRYY
Sbjct: 575 MGRHSGVNQLGGVFVNGRPLPDSTRQKIVELAHQGARPCDISRLLQVSNGCVSKILGRYY 754
Query: 73 ETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVS 132
ETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR +LL EGIC N+ +PSVS
Sbjct: 755 ETGSIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSEGICTNENIPSVS 934
Query: 133 SINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGI 192
SINR++R + + +A + P
Sbjct: 935 SINRVLRNLAS----GEKNTLQSLQSADPQMLEKLRLLNGNAWPHPGPWPYPPSTAGAPP 1102
Query: 193 PRSNGEKRKREEVEVYTDPAHIRGGGGL-HLVWTL---RDVSEGSVPNGDSQSGVDSLRK 248
P++NG ++E G G L + TL +D +GS + D L++
Sbjct: 1103PQTNGNVTTKKE-----------GDGKLASQILTLHGYQDQGDGSNDDSDEAQARLRLKR 1249
Query: 249 HLRAD--TFTQQQLEALDRVFERPSYPDVF 276
L+ + +FTQ+Q+EAL++ FER YPDVF
Sbjct: 1250KLQRNRTSFTQEQIEALEKEFERTHYPDVF 1339
>gb|U96197.1|CQU96197 Chrysaora quinquecirrha Pax-B (Pax-B) gene, partial cds
Length = 381
Score = 217 bits (553), Expect = 1e-54
Identities = 104/126 (82%), Positives = 114/126 (89%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGGVNQLGG+FVNGRPLP+ VR+RIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG
Sbjct: 4 HGGVNQLGGMFVNGRPLPEPVRRRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 183
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKPGVIGGSKPKVATP VV KIA+YK NPTMFAWEIR +LL + +C + VPSVSSIN
Sbjct: 184 SIKPGVIGGSKPKVATPMVVGKIADYKIANPTMFAWEIRDRLLLDSVCTQENVPSVSSIN 363
Query: 136 RIIRTK 141
RI+R +
Sbjct: 364 RIVRNR 381
>gb|AF154557.1|AF154557 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-2 allele, complete cds
Length = 2028
Score = 217 bits (553), Expect = 1e-54
Identities = 123/262 (46%), Positives = 153/262 (57%), Gaps = 1/262 (0%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 400 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 579
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIR +LL +G+C ND +PSVSSIN
Sbjct: 580 SIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRLLSDGVCTNDNIPSVSSIN 759
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R + DG G Y + G P
Sbjct: 760 RVLRNLASEKQQMGSDG----------MYDKLRMLNGQTGTWGARPGWYPGTSVPGQPAQ 909
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + + E +S + ++Q + RK R T
Sbjct: 910 EGCQPQEGGAE------------------NTNSISSNGEDSDEAQMRLQLKRKLQRNRTS 1035
Query: 255 FTQQQLEALDRVFERPSYPDVF 276
FTQ+Q+EAL++ FER YPDVF
Sbjct: 1036FTQEQIEALEKEFERTHYPDVF 1101
>gb|AF154555.1|AF154555 Xenopus laevis paired domain transcription factor variant A (Pax-6)
mRNA, Pax-6-2 allele, complete cds
Length = 2211
Score = 217 bits (553), Expect = 1e-54
Identities = 123/262 (46%), Positives = 153/262 (57%), Gaps = 1/262 (0%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 442 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 621
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIR +LL +G+C ND +PSVSSIN
Sbjct: 622 SIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRLLSDGVCTNDNIPSVSSIN 801
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R + DG G Y + G P
Sbjct: 802 RVLRNLASEKQQMGSDG----------MYDKLRMLNGQTGTWGARPGWYPGTSVPGQPAQ 951
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + + E +S + ++Q + RK R T
Sbjct: 952 EGCQPQEGGAE------------------NTNSISSNGEDSDEAQMRLQLKRKLQRNRTS 1077
Query: 255 FTQQQLEALDRVFERPSYPDVF 276
FTQ+Q+EAL++ FER YPDVF
Sbjct: 1078FTQEQIEALEKEFERTHYPDVF 1143
>gb|AF154556.1|AF154556 Xenopus laevis paired domain transcription factor variant A (Pax-6)
mRNA, Pax-6-1 allele, complete cds
Length = 2213
Score = 217 bits (553), Expect = 1e-54
Identities = 123/262 (46%), Positives = 153/262 (57%), Gaps = 1/262 (0%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 444 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 623
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIR +LL +G+C ND +PSVSSIN
Sbjct: 624 SIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRLLSDGVCTNDNIPSVSSIN 803
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R + DG G Y + G P
Sbjct: 804 RVLRNLASEKQQMGSDG----------MYDKLRMLNGQTGTWGARPGWYPGTSVPGQPAQ 953
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + + E +S + ++Q + RK R T
Sbjct: 954 EGCQPQEGGAE------------------NTNSISSNGEDSDEAQMRLQLKRKLQRNRTS 1079
Query: 255 FTQQQLEALDRVFERPSYPDVF 276
FTQ+Q+EAL++ FER YPDVF
Sbjct: 1080FTQEQIEALEKEFERTHYPDVF 1145
>gb|AF154552.1|AF154552 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-3 allele, complete cds
Length = 1882
Score = 216 bits (551), Expect = 2e-54
Identities = 123/262 (46%), Positives = 153/262 (57%), Gaps = 1/262 (0%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 262 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 441
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIR +LL +G+C ND +PSVSSIN
Sbjct: 442 SIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRLLSDGVCTNDNIPSVSSIN 621
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R + DG G Y + G P
Sbjct: 622 RVLRNLASEKQQMGSDG----------MYDKLRMLNGQTGTWGARPGWYPGTTVPGQPAQ 771
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + + E +S + ++Q + RK R T
Sbjct: 772 EGCQPQEGGAE------------------NTNSISSNGEDSDEAQMRLQLKRKLQRNRTS 897
Query: 255 FTQQQLEALDRVFERPSYPDVF 276
FTQ+Q+EAL++ FER YPDVF
Sbjct: 898 FTQEQIEALEKEFERTHYPDVF 963
>gb|U77532.1|XLU77532 Xenopus laevis Pax6 mRNA, complete cds
Length = 2487
Score = 216 bits (550), Expect = 3e-54
Identities = 143/371 (38%), Positives = 186/371 (49%), Gaps = 24/371 (6%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 585 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 764
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 765 SIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 944
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R +G G Y + G P
Sbjct: 945 RVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSVPGQPAQ 1094
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + +E V T+ +S + ++Q + RK R T
Sbjct: 1095EG-CQPQEGVGENTN-----------------SISSNGEDSDEAQMRLQLKRKLQRNRTS 1220
Query: 255 FTQQQLEALDRVFERPSYPDVF-----------------------QASEHIKSEQGNEYS 291
FTQ+Q+EAL++ FER YPDVF +A + + N+
Sbjct: 1221FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR 1400
Query: 292 LPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGS 351
+ TP + SS SAS + + ++ + T T L LPP
Sbjct: 1401QASNTPSHIPISSSFSASVYQPIPQPTTPVSSFTSGSMLGRTDTALTNSYSALPP----- 1565
Query: 352 YPTSTLAGMVP 362
P+ T+ +P
Sbjct: 1566MPSFTMGNNLP 1598
>emb|AJ223440.1|BFL223440 Branchiostoma floridae Pax6 gene (AmphiPax6) clone 12.1
Length = 4596
Score = 216 bits (550), Expect = 3e-54
Identities = 129/281 (45%), Positives = 168/281 (58%), Gaps = 6/281 (2%)
Frame = +2
Query: 2 DMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSH 61
D H + P A H GVNQLGGVFV GRPLPD R++IVELAHQG RPCDISR L+VS+
Sbjct: 506 DEHAQYSPVQADPGHSGVNQLGGVFVGGRPLPDSTRRKIVELAHQGARPCDISRLLQVSN 685
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR +LL EG
Sbjct: 686 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSEG 865
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPV 181
IC N+ +PSVSSINR++R + + +A + P
Sbjct: 866 ICTNENIPSVSSINRVLRNLAS----GEKNTLQSLQSADPQMLEKLRLLNGNAWPHPGPW 1033
Query: 182 GSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGL-HLVWTL---RDVSEGSVPNG 237
P++NG ++E G G L + TL +D +GS +
Sbjct: 1034PYPPSTAGAPPPQTNGNVTTKKE-----------GDGKLASQILTLHGYQDQGDGSNDDS 1180
Query: 238 DSQSGVDSLRKHLRAD--TFTQQQLEALDRVFERPSYPDVF 276
D L++ L+ + +FTQ+Q+EAL++ FER YPDVF
Sbjct: 1181DEAQARLRLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 1303
>gb|U64513.1|XLU64513 Xenopus laevis Xpax6 mRNA, complete cds
Length = 1270
Score = 216 bits (549), Expect = 4e-54
Identities = 125/262 (47%), Positives = 154/262 (58%), Gaps = 1/262 (0%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 13 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 192
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 193 SIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 372
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R +G G Y + G P
Sbjct: 373 RVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSVPGQPAQ 522
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + +E V T+ +S + ++Q + RK R T
Sbjct: 523 EG-CQPQEGVGENTN-----------------SISSNGEDSDEAQMRLQLKRKLQRNRTS 648
Query: 255 FTQQQLEALDRVFERPSYPDVF 276
FTQ+Q+EAL++ FER YPDVF
Sbjct: 649 FTQEQIEALEKEFERTHYPDVF 714
>gb|AF154553.1|AF154553 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-1 allele, complete cds
Length = 1980
Score = 216 bits (549), Expect = 4e-54
Identities = 125/262 (47%), Positives = 154/262 (58%), Gaps = 1/262 (0%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 379 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 558
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 559 SIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 738
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R +G G Y + G P
Sbjct: 739 RVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSVPGQPAQ 888
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + +E V T+ +S + ++Q + RK R T
Sbjct: 889 EG-CQPQEGVGENTN-----------------SISSNGEDSDEAQMRLQLKRKLQRNRTS 1014
Query: 255 FTQQQLEALDRVFERPSYPDVF 276
FTQ+Q+EAL++ FER YPDVF
Sbjct: 1015FTQEQIEALEKEFERTHYPDVF 1080
>gb|U76386.1|XLU76386 Xenopus laevis paired-type homeodomain (Pax-6) mRNA, complete cds
Length = 2009
Score = 216 bits (549), Expect = 4e-54
Identities = 125/262 (47%), Positives = 154/262 (58%), Gaps = 1/262 (0%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 556 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 735
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 736 SIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 915
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R +G G Y + G P
Sbjct: 916 RVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSVPGQPAQ 1065
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + +E V T+ +S + ++Q + RK R T
Sbjct: 1066EG-CQPQEGVGENTN-----------------SISSNGEDSDEAQMRLQLKRKLQRNRTS 1191
Query: 255 FTQQQLEALDRVFERPSYPDVF 276
FTQ+Q+EAL++ FER YPDVF
Sbjct: 1192FTQEQIEALEKEFERTHYPDVF 1257
>dbj|D88741.1|D88741 Cynops pyrrhogaster mRNA for PAX6 LL, PAX6 SL, PAX6 LS, PAX6 SS
Length = 2417
Score = 216 bits (549), Expect = 4e-54
Identities = 131/295 (44%), Positives = 164/295 (55%), Gaps = 26/295 (8%)
Frame = +1
Query: 8 DPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------- 58
+ F+ + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 169 EQFNMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQV 348
Query: 59 -----VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEI 113
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEI
Sbjct: 349 LDSQNVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEI 528
Query: 114 RAQLLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGH 162
R +LL EG+C ND +PSVSSINR++R + DG GT T PG
Sbjct: 529 RDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGTWGTRPGW 708
Query: 163 TIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHL 222
Y + G P +G +++ GGG
Sbjct: 709 ---------------------YPGTSVPGQPTPDGCQQQ-------------EGGGE--- 777
Query: 223 VWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
+S + ++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 778 --NTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 936
>emb|AJ223444.1|BFL223444 Branchiostoma floridae Pax6 gene (AmphiPax6), clone 12.2
Length = 2884
Score = 216 bits (549), Expect = 4e-54
Identities = 128/270 (47%), Positives = 166/270 (61%), Gaps = 6/270 (2%)
Frame = +2
Query: 13 MHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 72
M RH GVNQLGGVFV+GRPLPD RQ+IVELAHQG RPCDISR L+VS+GCVSKILGRYY
Sbjct: 641 MGRHSGVNQLGGVFVDGRPLPDSTRQKIVELAHQGARPCDISRLLQVSNGCVSKILGRYY 820
Query: 73 ETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVS 132
ETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR +LL EGIC N+ +PSVS
Sbjct: 821 ETGSIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSEGICTNENIPSVS 1000
Query: 133 SINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGI 192
SINR++R + + +A + P
Sbjct: 1001SINRVLRNLAS----GEKNTLQSLQSADPQMLEKLRLLNGNAWPHPGPWPYPPSTAGAPP 1168
Query: 193 PRSNGEKRKREEVEVYTDPAHIRGGGGL-HLVWTL---RDVSEGSVPNGDSQSGVDSLRK 248
P++NG ++E G G L + TL +D +GS + D L++
Sbjct: 1169PQTNGNVTTKKE-----------GDGKLASQILTLHGYQDQGDGSNDDSDEAQARLRLKR 1315
Query: 249 HLRAD--TFTQQQLEALDRVFERPSYPDVF 276
L+ + +FTQ+Q+EAL++ FER YPDVF
Sbjct: 1316KLQRNRTSFTQEQIEALEKEFERTHYPDVF 1405
>dbj|D88737.1|D88737 African clawed frog mRNA for Xenopus Pax-6 long, partial cds
Length = 1263
Score = 214 bits (546), Expect = 9e-54
Identities = 124/262 (47%), Positives = 154/262 (58%), Gaps = 1/262 (0%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 13 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 192
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 193 SIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 372
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R +G G Y + G P
Sbjct: 373 RVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSVPGQPAQ 522
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + +E V T+ +S + ++Q + RK + T
Sbjct: 523 EG-CQPQEGVGENTN-----------------SISSNGEDSDEAQMRLQLKRKLQKNRTS 648
Query: 255 FTQQQLEALDRVFERPSYPDVF 276
FTQ+Q+EAL++ FER YPDVF
Sbjct: 649 FTQEQIEALEKEFERTHYPDVF 714
>dbj|D88738.1|D88738 African clawed frog mRNA for Xenopus Pax-6 short, partial cds
Length = 1112
Score = 214 bits (546), Expect = 9e-54
Identities = 124/262 (47%), Positives = 154/262 (58%), Gaps = 1/262 (0%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 13 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 192
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIR +LL EG+C ND +PSVSSIN
Sbjct: 193 SIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSIN 372
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R +G G Y + G P
Sbjct: 373 RVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRPGWYPGTSVPGQPAQ 522
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
G + +E V T+ +S + ++Q + RK + T
Sbjct: 523 EG-CQPQEGVGENTN-----------------SISSNGEDSDEAQMRLQLKRKLQKNRTS 648
Query: 255 FTQQQLEALDRVFERPSYPDVF 276
FTQ+Q+EAL++ FER YPDVF
Sbjct: 649 FTQEQIEALEKEFERTHYPDVF 714
>ref|NM_001604.2| Homo sapiens paired box gene 6 (aniridia, keratitis) (PAX6), mRNA
Length = 1740
Score = 213 bits (543), Expect = 2e-53
Identities = 145/390 (37%), Positives = 190/390 (48%), Gaps = 38/390 (9%)
Frame = +1
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 415 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 594
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +
Sbjct: 595 QNVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDR 774
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+C ND +PSVSSINR++R + DG
Sbjct: 775 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGS 924
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
G Y + G P +G +++ GGG +S +
Sbjct: 925 WGTRPGWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDS 1050
Query: 237 GDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF------------------- 276
++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 1051DEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 1230
Query: 277 ----QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDM 332
+A + + N+ + TP + SS S S + + ++ +
Sbjct: 1231FSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGR 1410
Query: 333 TSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
T T L LPP P+ T+A +P
Sbjct: 1411TDTALTNTYSALPP-----MPSFTMANNLP 1485
>ref|NM_013627.1| Mus musculus paired box gene 6 (Pax6), mRNA
Length = 2481
Score = 213 bits (543), Expect = 2e-53
Identities = 145/390 (37%), Positives = 190/390 (48%), Gaps = 38/390 (9%)
Frame = +1
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 160 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 339
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +
Sbjct: 340 ENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDR 519
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+C ND +PSVSSINR++R + DG
Sbjct: 520 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGS 669
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
G Y + G P +G +++ GGG +S +
Sbjct: 670 WGTRPGWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDS 795
Query: 237 GDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF------------------- 276
++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 796 DEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 975
Query: 277 ----QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDM 332
+A + + N+ + TP + SS S S + + ++ +
Sbjct: 976 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGR 1155
Query: 333 TSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
T T L LPP P+ T+A +P
Sbjct: 1156TDTALTNTYSALPP-----MPSFTMANNLP 1230
>emb|X63963.1|MMPAX6PBP M.musculus pax-6 mRNA for paired box protein
Length = 2481
Score = 213 bits (543), Expect = 2e-53
Identities = 145/390 (37%), Positives = 190/390 (48%), Gaps = 38/390 (9%)
Frame = +1
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 160 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 339
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +
Sbjct: 340 ENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDR 519
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+C ND +PSVSSINR++R + DG
Sbjct: 520 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGS 669
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
G Y + G P +G +++ GGG +S +
Sbjct: 670 WGTRPGWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDS 795
Query: 237 GDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF------------------- 276
++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 796 DEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 975
Query: 277 ----QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDM 332
+A + + N+ + TP + SS S S + + ++ +
Sbjct: 976 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGR 1155
Query: 333 TSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
T T L LPP P+ T+A +P
Sbjct: 1156TDTALTNTYSALPP-----MPSFTMANNLP 1230
>gb|BC011272.1|BC011272 Mus musculus, clone MGC:18454 IMAGE:4008490, mRNA, complete cds
Length = 2580
Score = 213 bits (543), Expect = 2e-53
Identities = 145/390 (37%), Positives = 190/390 (48%), Gaps = 38/390 (9%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 527 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 706
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +
Sbjct: 707 ENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDR 886
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+C ND +PSVSSINR++R + DG
Sbjct: 887 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGS 1036
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
G Y + G P +G +++ GGG +S +
Sbjct: 1037WGTRPGWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDS 1162
Query: 237 GDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF------------------- 276
++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 1163DEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 1342
Query: 277 ----QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDM 332
+A + + N+ + TP + SS S S + + ++ +
Sbjct: 1343FSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGR 1522
Query: 333 TSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
T T L LPP P+ T+A +P
Sbjct: 1523TDTALTNTYSALPP-----MPSFTMANNLP 1597
>emb|Y19196.1|MMUY19196 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-4NEU
Length = 1469
Score = 213 bits (543), Expect = 2e-53
Identities = 145/390 (37%), Positives = 190/390 (48%), Gaps = 38/390 (9%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 107 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 286
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +
Sbjct: 287 ENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDR 466
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+C ND +PSVSSINR++R + DG
Sbjct: 467 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGS 616
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
G Y + G P +G +++ GGG +S +
Sbjct: 617 WGTRPGWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDS 742
Query: 237 GDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF------------------- 276
++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 743 DEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 922
Query: 277 ----QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDM 332
+A + + N+ + TP + SS S S + + ++ +
Sbjct: 923 FPNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGR 1102
Query: 333 TSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
T T L LPP P+ T+A +P
Sbjct: 1103TDTALTNTYSALPP-----MPSFTMANNLP 1177
>gb|AF169412.1|AF169412 Ambystoma mexicanum paired-box transcription factor ++ isoform
(Pax6) mRNA, partial cds
Length = 2005
Score = 213 bits (542), Expect = 3e-53
Identities = 130/287 (45%), Positives = 160/287 (55%), Gaps = 26/287 (9%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 61
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 7 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTQADAKVQVLDNQNVSN 186
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG
Sbjct: 187 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEG 366
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXX 170
+C ND +PSVSSINR++R + DG GT T PG
Sbjct: 367 VCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGTWGTRPGW-------- 522
Query: 171 XXXXXXXNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVS 230
Y + G P +G +++ GGG +S
Sbjct: 523 -------------YPGTSVPGQPTPDGCQQQ-------------EGGGE-----NTNSIS 609
Query: 231 EGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
+ ++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 610 SNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 750
>emb|Y19193.1|MMUY19193 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-2-NEU
Length = 1556
Score = 213 bits (542), Expect = 3e-53
Identities = 127/281 (45%), Positives = 158/281 (56%), Gaps = 15/281 (5%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 107 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 286
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +
Sbjct: 287 ENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDR 466
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+C ND +PSVSSINR++R + DG
Sbjct: 467 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGS 616
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
G Y + G P +G +++ GGG +S +
Sbjct: 617 WGTRPGWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDS 742
Query: 237 GDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 743 DEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 865
>gb|AF169413.1|AF169413 Ambystoma mexicanum paired-box transcription factor +- isoform
(Pax6) mRNA, partial cds
Length = 1854
Score = 213 bits (542), Expect = 3e-53
Identities = 130/287 (45%), Positives = 160/287 (55%), Gaps = 26/287 (9%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 61
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 7 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTQADAKVQVLDNQNVSN 186
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG
Sbjct: 187 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEG 366
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXX 170
+C ND +PSVSSINR++R + DG GT T PG
Sbjct: 367 VCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGTWGTRPGW-------- 522
Query: 171 XXXXXXXNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVS 230
Y + G P +G +++ GGG +S
Sbjct: 523 -------------YPGTSVPGQPTPDGCQQQ-------------EGGGE-----NTNSIS 609
Query: 231 EGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
+ ++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 610 SNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 750
>dbj|D87837.1|D87837 Gallus gallus mRNA for PAX6 protein, complete cds
Length = 1964
Score = 213 bits (542), Expect = 3e-53
Identities = 148/396 (37%), Positives = 191/396 (47%), Gaps = 49/396 (12%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 61
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 342 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSN 521
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG
Sbjct: 522 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEG 701
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXX 170
+C ND +PSVSSINR++R + DG GT T PG
Sbjct: 702 VCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGTWGTRPGW-------- 857
Query: 171 XXXXXXXNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVS 230
Y + G P +G ++ GGG +S
Sbjct: 858 -------------YPGTSVPGQPAQDGCPQQ-------------EGGGE-----NTNSIS 944
Query: 231 EGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF------------- 276
+ ++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 945 SNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPE 1124
Query: 277 ----------QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPV 326
+A + + N+ + TP + SS S S + + ++
Sbjct: 1125ARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTS 1304
Query: 327 VTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
+ T T L LPP P+ T+A +P
Sbjct: 1305GSMLGRTDTALTNTYSALPP-----MPSFTMANNLP 1397
>emb|Y19198.1|MMUY19198 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-6NEU
Length = 1469
Score = 213 bits (542), Expect = 3e-53
Identities = 127/281 (45%), Positives = 158/281 (56%), Gaps = 15/281 (5%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 107 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 286
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +
Sbjct: 287 ENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDR 466
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+C ND +PSVSSINR++R + DG
Sbjct: 467 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGS 616
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
G Y + G P +G +++ GGG +S +
Sbjct: 617 WGTRPGWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDS 742
Query: 237 GDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 743 DEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 865
>emb|AJ251933.1|PMA251933 Phallusia mammillata mRNA for transcription factor (pax258B gene)
Length = 3321
Score = 213 bits (541), Expect = 3e-53
Identities = 103/130 (79%), Positives = 115/130 (88%), Gaps = 1/130 (0%)
Frame = +1
Query: 16 HG-GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 74
HG GVNQLGG++VNGRPLP+ +RQRIV L+HQGVRPCDISRQLRVSHGCVSKIL RYYET
Sbjct: 1240 HGSGVNQLGGMYVNGRPLPEPIRQRIVNLSHQGVRPCDISRQLRVSHGCVSKILARYYET 1419
Query: 75 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSI 134
GSI+PGVIGGSKPKVAT VV KI EYKR NPTMFAWEIR +LL +GIC +TVPSVSSI
Sbjct: 1420 GSIRPGVIGGSKPKVATQDVVVKITEYKRDNPTMFAWEIRDRLLSDGICTGETVPSVSSI 1599
Query: 135 NRIIRTKVQQ 144
NRI+R+K +
Sbjct: 1600 NRIVRSKTSE 1629
>emb|X63183.1|BRPAX6 B.rerio pax-6 mRNA
Length = 2809
Score = 213 bits (541), Expect = 3e-53
Identities = 130/287 (45%), Positives = 160/287 (55%), Gaps = 26/287 (9%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 61
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 558 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNENVSN 737
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG
Sbjct: 738 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEG 917
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXX 170
+C ND +PSVSSINR++R + DG GT T PG
Sbjct: 918 VCTNDNIPSVSSINRVLRNLASEKQQMGADGMYEKLRMLNGQTGTWGTRPGW-------- 1073
Query: 171 XXXXXXXNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVS 230
Y + G P +G ++ GGG + +S
Sbjct: 1074-------------YPGTSVPGQPNQDGCQQS--------------DGGGEN----TNSIS 1160
Query: 231 EGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
+ ++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 1161SNGEDSDETQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 1301
>dbj|AB007462.1|AB007462 Ephydatia fluviatilis mRNA for Pax-2/5/8, complete cds
Length = 2422
Score = 212 bits (540), Expect = 4e-53
Identities = 100/128 (78%), Positives = 117/128 (91%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
GGVNQLGG+FVNGRPLP+ +R++IVEL+ GVRPCDISRQLRVSHGCVSKILGRYYETGS
Sbjct: 113 GGVNQLGGLFVNGRPLPESIRRKIVELSQNGVRPCDISRQLRVSHGCVSKILGRYYETGS 292
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
IKPGVIGGSKPKVAT KVV KI +YK++NP++FAWEIR +LL++G+CD VPSVSSINR
Sbjct: 293 IKPGVIGGSKPKVATSKVVLKIEDYKQENPSIFAWEIRDRLLQDGVCDKVNVPSVSSINR 472
Query: 137 IIRTKVQQ 144
I+RT+ QQ
Sbjct: 473 IVRTRAQQ 496
>emb|Y19199.1|MMUY19199 Mus musculus partial Pax-6 gene for paired box protein, PAX6-7NEU
Length = 1469
Score = 212 bits (540), Expect = 4e-53
Identities = 144/385 (37%), Positives = 188/385 (48%), Gaps = 38/385 (9%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 61
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 122 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNENVSN 301
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG
Sbjct: 302 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEG 481
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPV 181
+C ND +PSVSSINR++R + DG
Sbjct: 482 VCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGSWGTRP 631
Query: 182 GSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQS 241
G Y + G P +G +++ GGG +S + ++Q
Sbjct: 632 GWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQM 757
Query: 242 GVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF-----------------------Q 277
+ RK R T FTQ+Q+EAL++ FER YPDVF +
Sbjct: 758 RLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRR 937
Query: 278 ASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTL 337
A + + N+ + TP + SS S S + + ++ + T T L
Sbjct: 938 AKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTAL 1117
Query: 338 PGYPPHLPPTGQGSYPTSTLAGMVP 362
LPP P+ T+A +P
Sbjct: 1118TNTYSALPP-----MPSFTMANNLP 1177
>emb|Y19197.1|MMUY19197 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-5NEU
Length = 1469
Score = 211 bits (538), Expect = 8e-53
Identities = 145/390 (37%), Positives = 189/390 (48%), Gaps = 38/390 (9%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 107 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 286
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR
Sbjct: 287 ENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD* 466
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+C ND +PSVSSINR++R + DG
Sbjct: 467 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGS 616
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
G Y + G P +G +++ GGG +S +
Sbjct: 617 WGTRPGWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDS 742
Query: 237 GDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF------------------- 276
++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 743 DEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 922
Query: 277 ----QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDM 332
+A + + N+ + TP + SS S S + + ++ +
Sbjct: 923 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGR 1102
Query: 333 TSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
T T L LPP P+ T+A +P
Sbjct: 1103TDTALTNTYSALPP-----MPSFTMANNLP 1177
>gb|U59830.1|LOU59830 Loligo opalescens Pax-6 mRNA, complete cds
Length = 1980
Score = 211 bits (537), Expect = 1e-52
Identities = 131/268 (48%), Positives = 157/268 (57%), Gaps = 7/268 (2%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQRIVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 72 HSGVNQLGGVFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 251
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR +LL EG+C D +PSVSSIN
Sbjct: 252 SIRPRAIGGSKPRVATPEVVQKIAQFKRECPSIFAWEIRDRLLSEGVCTQDNIPSVSSIN 431
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI---LGI 192
R++R G V G T+ P Y+ N L
Sbjct: 432 RVLRNLA---------GENQKVLGQGTTMYDKLGLLNGQAWPR-PNPWYAPNASMAGLSA 581
Query: 193 PRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEG-SVPNG--DSQSGVDSLRKH 249
P S + P + G + + T D +G NG D Q + RK
Sbjct: 582 PSSYTQPNA---------PPTVAGKKEMENMSTNSDNGQGDGSQNGETDEQMRIRLKRKL 734
Query: 250 LRADT-FTQQQLEALDRVFERPSYPDVF 276
R T FT Q+EAL++ FER YPDVF
Sbjct: 735 QRNRTSFTAAQIEALEKEFERTHYPDVF 818
>emb|AJ307468.1|MMU307468 Mus musculus mRNA for paired box protein (Pax-6 gene)
Length = 1469
Score = 211 bits (537), Expect = 1e-52
Identities = 145/390 (37%), Positives = 189/390 (48%), Gaps = 38/390 (9%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 107 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 286
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA YKR+ P++FAWEIR +
Sbjct: 287 ENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIA*YKRECPSIFAWEIRDR 466
Query: 117 LLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXX 176
LL EG+C ND +PSVSSINR++R + DG
Sbjct: 467 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG----------MYDKLRMLNGQTGS 616
Query: 177 XNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPN 236
G Y + G P +G +++ GGG +S +
Sbjct: 617 WGTRPGWYPGTSVPGQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDS 742
Query: 237 GDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF------------------- 276
++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 743 DEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 922
Query: 277 ----QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDM 332
+A + + N+ + TP + SS S S + + ++ +
Sbjct: 923 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGR 1102
Query: 333 TSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
T T L LPP P+ T+A +P
Sbjct: 1103TDTALTNTYSALPP-----MPSFTMANNLP 1177
>dbj|AB061220.1|AB061220 Lampetra japonica mRNA for paired box transcription factor Pax6,
complete cds
Length = 2742
Score = 210 bits (535), Expect = 2e-52
Identities = 134/288 (46%), Positives = 159/288 (54%), Gaps = 18/288 (6%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 476 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 655
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG C +D +PSVSSIN
Sbjct: 656 SIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGACTSDNIPSVSSIN 835
Query: 136 RIIR--TKVQQPF---------------HPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXN 178
R++R +QP GAG G PG
Sbjct: 836 RVLRNLASEKQPMGAEGVYDKLRMLNGQQQQQPGAGWG-ARPG------WYPGAALPGQQ 994
Query: 179 DPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGD 238
P G S +G L SN E D
Sbjct: 995 GPEGCASHDGSLDTSLSNSASDDSE----------------------------------D 1072
Query: 239 SQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVFQASEHIKSE 285
+Q + RK R T FTQ+Q+EAL++ FER YPDVF A E + S+
Sbjct: 1073AQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF-ARERLASK 1213
>gb|AF165886.1|AF165886 Branchiostoma floridae paired-box transcription factor (Pax3/7)
mRNA, complete cds
Length = 1913
Score = 209 bits (533), Expect = 3e-52
Identities = 146/389 (37%), Positives = 190/389 (48%), Gaps = 19/389 (4%)
Frame = +1
Query: 10 FSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 69
F + G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL
Sbjct: 148 FFVLPGQGRVNQLGGVFINGRPLPNHIRHKIVEMAAAGIRPCVISRQLRVSHGCVSKILC 327
Query: 70 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVP 129
RY ETGSIKPG IGGSKP+VATP+V KI +YKR NP MF+WEIR +LL++G+CD TVP
Sbjct: 328 RYQETGSIKPGAIGGSKPRVATPEVEKKIEDYKRDNPGMFSWEIRDRLLKDGMCDRSTVP 507
Query: 130 SVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGI 189
SVSSI+RI+R K GH I + +SI+GI
Sbjct: 508 SVSSISRILRGK-------------------GHKISDLEIEGEDDFSIDGDRKPHSIDGI 630
Query: 190 LGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKH 249
LG NG G + DS+ + RK
Sbjct: 631 LG--EKNG---------------------------------PGDSSDCDSEPDLPLKRKQ 705
Query: 250 LRA-DTFTQQQLEALDRVFERPSYPDVFQASE----------HIKSEQGNEYSLPALTPG 298
R+ TFT +QLE L++ FER YPD++ E ++ N + G
Sbjct: 706 RRSRTTFTPEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQQG 885
Query: 299 LDEVKSSLSASANPELGSNVSGTQTY-----PVVTGRDMTSTTLPGYPPHLPPTG---QG 350
++ S + + +GT TY P S TL P LPPT G
Sbjct: 886 AQQIPSFMPLG----YPAPAAGTPTYMPVPEPAYPANAQDSATL-HRPQPLPPTSIHQNG 1050
Query: 351 SYPTSTLAGMVPGSEFSGNPYSHPQYTAY 379
+ T+++ G + PY +P +Y
Sbjct: 1051AADTASMYGT------ASKPYQYPFSDSY 1119
>emb|Y07547.1|AFPAX6C72 Astyanax fasciatus mRNA for PAX-6 protein, clone cave 7-2
Length = 2211
Score = 209 bits (532), Expect = 4e-52
Identities = 128/287 (44%), Positives = 157/287 (54%), Gaps = 26/287 (9%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 61
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 679 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTQADAKVQVLDNENVSN 858
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR +LL EG
Sbjct: 859 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVGKIAQFKRECPSIFAWEIRDRLLSEG 1038
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIXXXXXX 170
IC ND +PSVSSINR++R + DG GT T PG
Sbjct: 1039ICTNDNIPSVSSINRVLRNLASEKQQMGADGMYEKLRMLNGQTGTWGTRPGW-------- 1194
Query: 171 XXXXXXXNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVS 230
Y + G P +G ++ E +S
Sbjct: 1195-------------YPGTSVPGQPNQDGCQQSDGGAE------------------NTNSIS 1281
Query: 231 EGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
+ ++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 1282SNGEDSEEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 1422
>ref|NM_068112.1| paired box transcription factor
Length = 1056
Score = 208 bits (529), Expect = 8e-52
Identities = 101/153 (66%), Positives = 116/153 (75%)
Frame = +1
Query: 8 DPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 67
DP + H GVNQLGGVFVNGRPLPD +R +IVE++ G RPCDISRQL+VSHGCVSKI
Sbjct: 250 DPLLSDGSHTGVNQLGGVFVNGRPLPDTIRAQIVEMSQHGTRPCDISRQLKVSHGCVSKI 429
Query: 68 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDT 127
LGRYY TGS++PGVIGGSKPKVATP+VV+ IA YKR NPTMFAWEIR +L+ + IC +
Sbjct: 430 LGRYYSTGSVRPGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEEN 609
Query: 128 VPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAP 160
VPSVSSINRI+R K TP V P
Sbjct: 610 VPSVSSINRIVRNKSFMAQLATPTSVTPSVARP 708
>gb|U67887.1|XLU67887 Xenopus laevis XLPAX6 (Pax6) mRNA, complete cds
Length = 1643
Score = 207 bits (528), Expect = 1e-51
Identities = 123/276 (44%), Positives = 153/276 (54%), Gaps = 15/276 (5%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 61
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 208 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQSHADAKVPVLDSQNVSN 387
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV+KIA+YKR+ P++FAWEIR +LL +G
Sbjct: 388 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVNKIAQYKRECPSIFAWEIRDRLLSDG 567
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPV 181
+C ND +PSVSSINR++R + DG
Sbjct: 568 VCTNDNIPSVSSINRVLRNLASEKQQMGSDG----------MYDKLRMLNGQTGTWGARP 717
Query: 182 GSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQS 241
G Y + G P G + + E +S + ++Q
Sbjct: 718 GWYPGTSVPGQPAQEGCQPQEGGAE------------------NTNSISSNGEDSDEAQM 843
Query: 242 GVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
+ RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 844 RLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 951
>gb|AF411465.1|AF411465 Petromyzon marinus transcription factor Pax7 mRNA, complete cds
Length = 2190
Score = 207 bits (526), Expect = 2e-51
Identities = 138/350 (39%), Positives = 184/350 (52%), Gaps = 2/350 (0%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVELAH GVRPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 290 GRVNQLGGVFINGRPLPNHIRHKIVELAHHGVRPCVISRQLRVSHGCVSKILCRYQETGS 469
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKP+ VA+ V KI EYKR+NP MF+WEIR +LL++G+CD +VPSVSSI+
Sbjct: 470 IRPGAIGGSKPRQVASTDVERKIEEYKRENPGMFSWEIRDRLLKDGVCDRASVPSVSSIS 649
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RI+R K + +GA D +SI+GILG
Sbjct: 650 RILRAKFGKRDEEEEEGA----------------EKKDFGDDGDKKAKHSIDGILGDKAG 781
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DT 254
+ T+ D S+ DS+ + RK R+ T
Sbjct: 782 S----------------------------TVEDSSD-----VDSEPDLPLKRKQRRSRTT 862
Query: 255 FTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPEL 314
FT +QLE L++ FER YPD++ E + + E + S+ A +
Sbjct: 863 FTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRARWRKQA 1021
Query: 315 GSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGS 364
G+N + + G ++PG PP+ P +G YP S + + G+
Sbjct: 1022GANQLAAFNHLIPGG--FPPASMPGLPPYQLP--EGPYPGSGIPQVDTGT 1159
>ref|NM_079899.1| Drosophila melanogaster twin of eyeless (toy), mRNA
Length = 1734
Score = 207 bits (526), Expect = 2e-51
Identities = 129/288 (44%), Positives = 167/288 (57%), Gaps = 16/288 (5%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H G+NQLGGV+VNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 97 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 276
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKP IGGSKP+VAT VV KIA+YKR+ P++FAWEIR +LL E +C++D +PSVSSIN
Sbjct: 277 SIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSIN 456
Query: 136 RIIRTKVQQPFHPTPD------------GAGTGVTA--PGHTIXXXXXXXXXXXXXNDPV 181
R++R Q TG A P +T P
Sbjct: 457 RVLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAASVVTSPA 636
Query: 182 GSYSINGILGIPRSNGEKRKRE-EVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
+++G R + +KR+ + VEV +H G + S + DSQ
Sbjct: 637 ---NLSG--QADRDDVQKRELQFSVEVSHTNSHDSTSDG--------NSEHNSSGDEDSQ 777
Query: 241 SGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVFQASEHIKSEQG 287
+ RK R T F+ +Q+++L++ FER YPDVF A E + + G
Sbjct: 778 MRLRLKRKLQRNRTSFSNEQIDSLEKEFERTHYPDVF-ARERLADKIG 918
>gb|AF134350.1|AF134350 Drosophila melanogaster transcription factor Toy (toy) mRNA,
complete cds
Length = 1734
Score = 207 bits (526), Expect = 2e-51
Identities = 129/288 (44%), Positives = 167/288 (57%), Gaps = 16/288 (5%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H G+NQLGGV+VNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 97 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 276
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKP IGGSKP+VAT VV KIA+YKR+ P++FAWEIR +LL E +C++D +PSVSSIN
Sbjct: 277 SIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSIN 456
Query: 136 RIIRTKVQQPFHPTPD------------GAGTGVTA--PGHTIXXXXXXXXXXXXXNDPV 181
R++R Q TG A P +T P
Sbjct: 457 RVLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAASVVTSPA 636
Query: 182 GSYSINGILGIPRSNGEKRKRE-EVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
+++G R + +KR+ + VEV +H G + S + DSQ
Sbjct: 637 ---NLSG--QADRDDVQKRELQFSVEVSHTNSHDSTSDG--------NSEHNSSGDEDSQ 777
Query: 241 SGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVFQASEHIKSEQG 287
+ RK R T F+ +Q+++L++ FER YPDVF A E + + G
Sbjct: 778 MRLRLKRKLQRNRTSFSNEQIDSLEKEFERTHYPDVF-ARERLADKIG 918
>gb|BC008826.1|BC008826 Homo sapiens, paired box gene 3 (Waardenburg syndrome 1), clone
MGC:12856 IMAGE:4099446, mRNA, complete cds
Length = 2827
Score = 207 bits (526), Expect = 2e-51
Identities = 123/271 (45%), Positives = 150/271 (54%), Gaps = 7/271 (2%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 293 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 472
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PG IGGSKPKV TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+R
Sbjct: 473 IRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISR 652
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
I+R+K G G A ++ +SI+GIL
Sbjct: 653 ILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS----- 763
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LRKHL 250
S P D S +DS RK
Sbjct: 764 ---------------------------------ERASAPQSDEGSDIDSEPDLPLKRKQR 844
Query: 251 RA-DTFTQQQLEALDRVFERPSYPDVFQASE 280
R+ TFT +QLE L+R FER YPD++ E
Sbjct: 845 RSRTTFTAEQLEELERAFERTHYPDIYTREE 937
>gb|AY051487.1| Drosophila melanogaster GH14454 full length cDNA
Length = 2277
Score = 207 bits (526), Expect = 2e-51
Identities = 129/288 (44%), Positives = 167/288 (57%), Gaps = 16/288 (5%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H G+NQLGGV+VNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 587 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 766
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKP IGGSKP+VAT VV KIA+YKR+ P++FAWEIR +LL E +C++D +PSVSSIN
Sbjct: 767 SIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSIN 946
Query: 136 RIIRTKVQQPFHPTPD------------GAGTGVTA--PGHTIXXXXXXXXXXXXXNDPV 181
R++R Q TG A P +T P
Sbjct: 947 RVLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAASVVTSPA 1126
Query: 182 GSYSINGILGIPRSNGEKRKRE-EVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 240
+++G R + +KR+ + VEV +H G + S + DSQ
Sbjct: 1127---NLSG--QADRDDVQKRELQFSVEVSHTNSHDSTSDG--------NSEHNSSGDEDSQ 1267
Query: 241 SGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVFQASEHIKSEQG 287
+ RK R T F+ +Q+++L++ FER YPDVF A E + + G
Sbjct: 1268MRLRLKRKLQRNRTSFSNEQIDSLEKEFERTHYPDVF-ARERLADKIG 1408
>gb|AF154554.1|AF154554 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-4 allele, partial cds
Length = 1207
Score = 206 bits (524), Expect = 3e-51
Identities = 125/276 (45%), Positives = 154/276 (55%), Gaps = 15/276 (5%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 61
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 51 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQSQAEAKVPGLDSQNVSN 230
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIR +LL EG
Sbjct: 231 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEG 410
Query: 122 ICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPV 181
+C ND +PSVSSINR++R +G
Sbjct: 411 VCTNDNIPSVSSINRVLRNLASDKQQMGSEG----------MYDKLRMLNGQTATWGSRP 560
Query: 182 GSYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQS 241
G Y + G P G + +E V T+ +S + ++Q
Sbjct: 561 GWYPGTSVPGQPAQEG-CQPQEGVGENTN-----------------SISSNGEDSDEAQM 686
Query: 242 GVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
+ RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 687 RLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 794
>ref|NM_077357.1| 'Paired box' domain, homeobox protein (paired subfamily)
Length = 1368
Score = 205 bits (522), Expect = 5e-51
Identities = 139/367 (37%), Positives = 188/367 (50%), Gaps = 27/367 (7%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQRIV+LAH+G RPCDISR L+VS+GCVSKIL RYYE+G
Sbjct: 16 HTGVNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYESG 195
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
+I+P IGGSKP+VAT VV+KI +YKR P++FAWEIR +LL + IC+N+T+PSVSSIN
Sbjct: 196 TIRPRAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPSVSSIN 375
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-------YSING 188
R++R + T N P S +NG
Sbjct: 376 RVLRNLAAKKEQVT---------------MQTELYDRIRIVDNFPYNSSWYGQWPIPMNG 510
Query: 189 ILGI----------PRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGD 238
+G+ P++ GE K E+ + T+ P D
Sbjct: 511 AVGLNPFVPAPLIEPKTEGEFEKDEDQKPPTE------------------------PEDD 618
Query: 239 SQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLP---- 293
+ + + RK R T FTQ Q+E+L++ FER YPDVF + Q E +
Sbjct: 619 AAARMRLKRKLQRNRTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFS 798
Query: 294 ---ALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTST--TLPGYPPHLPPTG 348
A +++++ S+ SN + T T VTG +MT+ + P P
Sbjct: 799 NRRAKWRREEKMRNKRSSGTMDSSLSNGTPTPTPGSVTGSNMTNPIGSPASTPNRFPSNN 978
Query: 349 QGSYPTS 355
+ PT+
Sbjct: 979 SANLPTT 999
>gb|U31537.1|CEU31537 Caenorhabditis elegans variable abnormal-3 (vab-3) mRNA, complete
cds (and male abnormal-18 (mab-18), 3' exons, partial
cds)
Length = 2549
Score = 205 bits (522), Expect = 5e-51
Identities = 139/367 (37%), Positives = 188/367 (50%), Gaps = 27/367 (7%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQRIV+LAH+G RPCDISR L+VS+GCVSKIL RYYE+G
Sbjct: 272 HTGVNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYESG 451
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
+I+P IGGSKP+VAT VV+KI +YKR P++FAWEIR +LL + IC+N+T+PSVSSIN
Sbjct: 452 TIRPRAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPSVSSIN 631
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS-------YSING 188
R++R + T N P S +NG
Sbjct: 632 RVLRNLAAKKEQVT---------------MQTELYDRIRIVDNFPYNSSWYGQWPIPMNG 766
Query: 189 ILGI----------PRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGD 238
+G+ P++ GE K E+ + T+ P D
Sbjct: 767 AVGLNPFVPAPLIEPKTEGEFEKDEDQKPPTE------------------------PEDD 874
Query: 239 SQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLP---- 293
+ + + RK R T FTQ Q+E+L++ FER YPDVF + Q E +
Sbjct: 875 AAARMRLKRKLQRNRTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFS 1054
Query: 294 ---ALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTST--TLPGYPPHLPPTG 348
A +++++ S+ SN + T T VTG +MT+ + P P
Sbjct: 1055NRRAKWRREEKMRNKRSSGTMDSSLSNGTPTPTPGSVTGSNMTNPIGSPASTPNRFPSNN 1234
Query: 349 QGSYPTS 355
+ PT+
Sbjct: 1235SANLPTT 1255
>gb|AF053459.2|AMPAXC1 Acropora millepora PaxC transcription factor (PaxC) mRNA, complete
cds
Length = 1936
Score = 205 bits (521), Expect = 7e-51
Identities = 95/129 (73%), Positives = 112/129 (86%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HGG+NQLGG FVNGRPLPD +R RIV+LA GVRPC+ISR+L VSHGCVSKILGR+YETG
Sbjct: 208 HGGINQLGGPFVNGRPLPDYIRHRIVQLAACGVRPCEISRRLLVSHGCVSKILGRFYETG 387
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+PG IGGSKPKVATP VV+KI +YK+QNPT+FAWEIR +L+ EG+CD + PSVSSIN
Sbjct: 388 SIRPGSIGGSKPKVATPPVVNKIVQYKQQNPTIFAWEIRDRLVEEGVCDRENTPSVSSIN 567
Query: 136 RIIRTKVQQ 144
RI+R K +
Sbjct: 568 RILRNKAAE 594
>gb|AF014366.1|AF014366 Danio rerio transcription factor PAX3 (pax3) mRNA, complete cds
Length = 2734
Score = 204 bits (520), Expect = 9e-51
Identities = 123/266 (46%), Positives = 153/266 (57%), Gaps = 2/266 (0%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 382 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 561
Query: 77 IKPGVIGGSKPKVA-TPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK + TP V KI EYKR+NP MF+WEIR +LL++GICD + VPSVSSI+
Sbjct: 562 IRPGAIGGSKPKQSTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDGICDRNNVPSVSSIS 741
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R K G N+ +SI+GILG S
Sbjct: 742 RMLRCK---------------FGGNGDEDEDDDEVEKREIEENERRAKHSIDGILGDRSS 876
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DT 254
+ + EGS + DS+ G+ RK R+ T
Sbjct: 877 HSD--------------------------------EGS--DVDSEPGLPLKRKQRRSRTT 954
Query: 255 FTQQQLEALDRVFERPSYPDVFQASE 280
FT +QLE L+R FER YPD++ E
Sbjct: 955 FTAEQLEELERAFERTHYPDIYTREE 1032
>gb|AF254422.2|AF254422 Mus musculus paired box transcription factor PAX7 (Pax7) mRNA,
partial cds
Length = 4244
Score = 204 bits (520), Expect = 9e-51
Identities = 142/361 (39%), Positives = 189/361 (52%), Gaps = 2/361 (0%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 76 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 255
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIR +LL++G CD TVPSVSSI+
Sbjct: 256 IRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSIS 435
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R K + D G G + +SI+GIL
Sbjct: 436 RVLRIKFGK---KEDDEEGDKKEEDG-----------------EKKAKHSIDGIL----- 540
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DT 254
G+K R + EGS + +S+ + RK R+ T
Sbjct: 541 -GDKGNR--------------------------LDEGS--DVESEPDLPLKRKQRRSRTT 633
Query: 255 FTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPEL 314
FT +QLE L++ FER YPD++ E + + E + S+ A +
Sbjct: 634 FTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRARWRKQA 792
Query: 315 GSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHP 374
G+N + + G T +P PP+ P +YPT+T+ S+ G+ P
Sbjct: 793 GANQLAAFNHLLPGG--FPPTGMPTLPPYQLP--DSTYPTTTI------SQDGGSTVHRP 942
Query: 375 Q 375
Q
Sbjct: 943 Q 945
>gb|AF002702.1|AF002702 Caenorhabditis elegans PAX protein (egl-38) mRNA, complete cds
Length = 1059
Score = 203 bits (517), Expect = 2e-50
Identities = 97/134 (72%), Positives = 111/134 (82%)
Frame = +3
Query: 8 DPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 67
DP + H GVNQLGGVFVNGRPL D VR +IVE++ G RPCDISRQL+VSHGCVSKI
Sbjct: 216 DPLLSDGSHTGVNQLGGVFVNGRPLADTVRAQIVEMSQHGTRPCDISRQLKVSHGCVSKI 395
Query: 68 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDT 127
LGRYY TGS++PGVIGGSKPKVATP+VV+ IA YKR NPTMFAWEIR +L+ + IC +
Sbjct: 396 LGRYYSTGSVRPGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEEN 575
Query: 128 VPSVSSINRIIRTK 141
VPSVSSINRI+R K
Sbjct: 576 VPSVSSINRIVRNK 617
>ref|NM_069435.1| Human paired box protein like
Length = 870
Score = 203 bits (517), Expect = 2e-50
Identities = 97/134 (72%), Positives = 111/134 (82%)
Frame = +1
Query: 8 DPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 67
DP + H GVNQLGGVFVNGRPL D VR +IVE++ G RPCDISRQL+VSHGCVSKI
Sbjct: 64 DPLLSDGSHTGVNQLGGVFVNGRPLADTVRAQIVEMSQHGTRPCDISRQLKVSHGCVSKI 243
Query: 68 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDT 127
LGRYY TGS++PGVIGGSKPKVATP+VV+ IA YKR NPTMFAWEIR +L+ + IC +
Sbjct: 244 LGRYYSTGSVRPGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEEN 423
Query: 128 VPSVSSINRIIRTK 141
VPSVSSINRI+R K
Sbjct: 424 VPSVSSINRIVRNK 465
>gb|AF000673.1|AF000673 Coturnix coturnix paired-box transcription factor protein (Pax-3)
mRNA, partial cds
Length = 3080
Score = 203 bits (516), Expect = 3e-50
Identities = 124/272 (45%), Positives = 149/272 (54%), Gaps = 8/272 (2%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 93 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 272
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+N MF+WEIR +LL++G+CD +TVPSVSSI+
Sbjct: 273 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENAGMFSWEIRERLLKDGVCDRNTVPSVSSIS 452
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RI+R+K G G A D +SI+GIL
Sbjct: 453 RILRSKF---------GKGEEEEA---------ELERKEAEEGDKKAKHSIDGILS---- 566
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LRKH 249
S P D S +DS RK
Sbjct: 567 ----------------------------------ERASAPQSDEGSDIDSEPDLPLKRKQ 644
Query: 250 LRA-DTFTQQQLEALDRVFERPSYPDVFQASE 280
R+ TFT +QLE L+R FER YPD++ E
Sbjct: 645 RRSRTTFTAEQLEELERAFERTHYPDIYTREE 740
>gb|AF016885.1|AF016885 Paracentrotus lividus paired box protein (suPaxB) mRNA, complete
cds
Length = 3256
Score = 203 bits (516), Expect = 3e-50
Identities = 98/125 (78%), Positives = 111/125 (88%)
Frame = +2
Query: 18 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI 77
GVNQLGG F NGRPLP +RQ+IVELA +GVRPCDISRQL+VSHGCVSKIL R+YETGSI
Sbjct: 386 GVNQLGGCFANGRPLPIQIRQQIVELAREGVRPCDISRQLKVSHGCVSKILVRFYETGSI 565
Query: 78 KPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRI 137
KPGVIGGSKPKVAT +VV+KIA+YKR NPT+FAWEIR +LL E +C DTVPSVSSINRI
Sbjct: 566 KPGVIGGSKPKVATGEVVNKIADYKRDNPTIFAWEIRDRLLSENVCVKDTVPSVSSINRI 745
Query: 138 IRTKV 142
+R K+
Sbjct: 746 LRNKI 760
>gb|U96196.1|CQU96196 Chrysaora quinquecirrha Pax-A2 (Pax-A2) gene, partial cds
Length = 381
Score = 202 bits (515), Expect = 4e-50
Identities = 97/123 (78%), Positives = 107/123 (86%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
GGVNQLGGVFVNGRPLPD +R RI+ELAH GVRP +ISRQL VSHGCVSKILGRYYETGS
Sbjct: 7 GGVNQLGGVFVNGRPLPDYMRHRIIELAHCGVRPSEISRQLLVSHGCVSKILGRYYETGS 186
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
++PG IGGSKPKVATPKVV +I + K +NP MFAWEIR LL EG+CDN VPSVSSINR
Sbjct: 187 VRPGAIGGSKPKVATPKVVARIVKLKEENPCMFAWEIRNTLLSEGVCDNTNVPSVSSINR 366
Query: 137 IIR 139
I+R
Sbjct: 367 ILR 375
>gb|U96195.1|CQU96195 Chrysaora quinquecirrha Pax-A1 (Pax-A1) gene, partial cds
Length = 381
Score = 202 bits (515), Expect = 4e-50
Identities = 97/123 (78%), Positives = 107/123 (86%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
GGVNQLGGVFVNGRPLPD +R RI+ELAH GVRP +ISRQL VSHGCVSKILGRYYETGS
Sbjct: 7 GGVNQLGGVFVNGRPLPDYMRHRIIELAHCGVRPSEISRQLLVSHGCVSKILGRYYETGS 186
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
++PG IGGSKPKVATPKVV +I + K +NP MFAWEIR LL EG+CDN VPSVSSINR
Sbjct: 187 VRPGAIGGSKPKVATPKVVARIVKLKEENPCMFAWEIRNTLLSEGVCDNTNVPSVSSINR 366
Query: 137 IIR 139
I+R
Sbjct: 367 ILR 375
>ref|NM_013945.1| Homo sapiens paired box gene 7 (PAX7), transcript variant 2, mRNA
Length = 2255
Score = 202 bits (515), Expect = 4e-50
Identities = 139/361 (38%), Positives = 186/361 (51%), Gaps = 2/361 (0%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 705 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 884
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIR +LL++G CD TVPSVSSI+
Sbjct: 885 IRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSIS 1064
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R K + + +SI+GIL
Sbjct: 1065RVLRIKFGK--------------------KEEEDEADKKEDDGEKKAKHSIDGIL----- 1169
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DT 254
G+K R + EGS + +S+ + RK R+ T
Sbjct: 1170-GDKGNR--------------------------LDEGS--DVESEPDLPLKRKQRRSRTT 1262
Query: 255 FTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPEL 314
FT +QLE L++ FER YPD++ E + + E + S+ A +
Sbjct: 1263FTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRARWRKQA 1421
Query: 315 GSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHP 374
G+N + + G T +P PP+ P +YPT+T+ S+ G+ P
Sbjct: 1422GANQLAAFNHLLPGG--FPPTGMPTLPPYQLP--DSTYPTTTI------SQDGGSTVHRP 1571
Query: 375 Q 375
Q
Sbjct: 1572Q 1574
>ref|NM_008781.1| Mus musculus paired box gene 3 (Pax3), mRNA
Length = 2347
Score = 202 bits (514), Expect = 5e-50
Identities = 123/272 (45%), Positives = 150/272 (54%), Gaps = 8/272 (2%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 403 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 582
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 583 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 762
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RI+R+K G G A ++ +SI+GIL
Sbjct: 763 RILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS---- 876
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LRKH 249
S P D S +DS RK
Sbjct: 877 ----------------------------------ERASAPQSDEGSDIDSEPDLPLKRKQ 954
Query: 250 LRA-DTFTQQQLEALDRVFERPSYPDVFQASE 280
R+ TFT +QLE L+R FER YPD++ E
Sbjct: 955 RRSRTTFTAEQLEELERAFERTHYPDIYTREE 1050
>emb|X59358.1|MMPAX3R Mouse Pax-3 gene for a DNA binding protein, involved in early
neurogenesis
Length = 2347
Score = 202 bits (514), Expect = 5e-50
Identities = 123/272 (45%), Positives = 150/272 (54%), Gaps = 8/272 (2%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 403 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 582
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 583 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 762
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RI+R+K G G A ++ +SI+GIL
Sbjct: 763 RILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS---- 876
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LRKH 249
S P D S +DS RK
Sbjct: 877 ----------------------------------ERASAPQSDEGSDIDSEPDLPLKRKQ 954
Query: 250 LRA-DTFTQQQLEALDRVFERPSYPDVFQASE 280
R+ TFT +QLE L+R FER YPD++ E
Sbjct: 955 RRSRTTFTAEQLEELERAFERTHYPDIYTREE 1050
>gb|AF016886.1|AF016886 Strongylocentrotus purpuratus paired box protein (suPaxB) mRNA,
complete cds
Length = 4075
Score = 202 bits (514), Expect = 5e-50
Identities = 98/125 (78%), Positives = 109/125 (86%)
Frame = +1
Query: 18 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI 77
GVNQLGG F NGRPLP +R +IVELA +GVRPCDISRQL+VSHGCVSKIL R+YETGSI
Sbjct: 310 GVNQLGGCFANGRPLPTQIRTQIVELAREGVRPCDISRQLKVSHGCVSKILVRFYETGSI 489
Query: 78 KPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRI 137
KPGVIGGSKPKVAT VVDKIA+YKR NPT+FAWEIR +LL E IC +TVPSVSSINRI
Sbjct: 490 KPGVIGGSKPKVATRDVVDKIADYKRDNPTIFAWEIRDRLLSESICGKETVPSVSSINRI 669
Query: 138 IRTKV 142
+R K+
Sbjct: 670 LRNKI 684
>gb|U02368.1|HSU02368 Human PAX3/forkhead transcription factor gene fusion mRNA, complete
cds
Length = 3200
Score = 202 bits (514), Expect = 5e-50
Identities = 123/272 (45%), Positives = 150/272 (54%), Gaps = 8/272 (2%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 154 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 333
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 334 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 513
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RI+R+K G G A ++ +SI+GIL
Sbjct: 514 RILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS---- 627
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LRKH 249
S P D S +DS RK
Sbjct: 628 ----------------------------------ERASAPQSDEGSDIDSEPDLPLKRKQ 705
Query: 250 LRA-DTFTQQQLEALDRVFERPSYPDVFQASE 280
R+ TFT +QLE L+R FER YPD++ E
Sbjct: 706 RRSRTTFTAEQLEELERAFERTHYPDIYTREE 801
>gb|AF178854.1|AF178854 Synthetic construct Pax3-forkhead fusion protein (Pax3/FKHR) mRNA,
complete cds
Length = 2725
Score = 202 bits (514), Expect = 5e-50
Identities = 123/272 (45%), Positives = 150/272 (54%), Gaps = 8/272 (2%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 314 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 493
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 494 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 673
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RI+R+K G G A ++ +SI+GIL
Sbjct: 674 RILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS---- 787
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LRKH 249
S P D S +DS RK
Sbjct: 788 ----------------------------------ERASAPQSDEGSDIDSEPDLPLKRKQ 865
Query: 250 LRA-DTFTQQQLEALDRVFERPSYPDVFQASE 280
R+ TFT +QLE L+R FER YPD++ E
Sbjct: 866 RRSRTTFTAEQLEELERAFERTHYPDIYTREE 961
>dbj|AK014337.1|AK014337 Mus musculus 14, 17 days embryo head cDNA, RIKEN full-length
enriched library, clone:3230402M02:paired box gene 3,
full insert sequence
Length = 1891
Score = 202 bits (514), Expect = 5e-50
Identities = 123/272 (45%), Positives = 150/272 (54%), Gaps = 8/272 (2%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 195 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 374
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 375 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 554
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RI+R+K G G A ++ +SI+GIL
Sbjct: 555 RILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS---- 668
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LRKH 249
S P D S +DS RK
Sbjct: 669 ----------------------------------ERASAPQSDEGSDIDSEPDLPLKRKQ 746
Query: 250 LRA-DTFTQQQLEALDRVFERPSYPDVFQASE 280
R+ TFT +QLE L+R FER YPD++ E
Sbjct: 747 RRSRTTFTAEQLEELERAFERTHYPDIYTREE 842
>dbj|D87838.1|D87838 Gallus gallus mRNA for PAX7 protein, complete cds
Length = 2132
Score = 202 bits (513), Expect = 6e-50
Identities = 139/361 (38%), Positives = 186/361 (51%), Gaps = 2/361 (0%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 291 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 470
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIR +LL++G CD TVPSVSSI+
Sbjct: 471 IRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSIS 650
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R K + + +SI+GIL
Sbjct: 651 RVLRIKFGK--------------------KEEEEDCDKKEEDGEKKAKHSIDGIL----- 755
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DT 254
G+K R + EGS + +S+ + RK R+ T
Sbjct: 756 -GDKGNR--------------------------LDEGS--DVESEPDLPLKRKQRRSRTT 848
Query: 255 FTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPEL 314
FT +QLE L++ FER YPD++ E + + E + S+ A +
Sbjct: 849 FTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRARWRKQA 1007
Query: 315 GSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHP 374
G+N + + G T +P PP+ P +YPT+T+ S+ G+ P
Sbjct: 1008GANQLAAFNHLLPGG--FPPTGMPTLPPYQLP--DSTYPTTTI------SQDGGSTVHRP 1157
Query: 375 Q 375
Q
Sbjct: 1158Q 1160
>dbj|AB017632.1|AB017632 Dugesia japonica mRNA for DjPax-6, complete cds
Length = 2006
Score = 202 bits (513), Expect = 6e-50
Identities = 124/301 (41%), Positives = 164/301 (54%), Gaps = 40/301 (13%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H G+NQLGG+FVNGRPLPD RQRIVELAH G RPCDISR L+VS+GCVSKIL RYYETG
Sbjct: 201 HSGINQLGGMFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKILCRYYETG 380
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VAT VV KIA YKR+ P++F+WEIR +LL+EG+C+ D +PSVSSIN
Sbjct: 381 SIRPKAIGGSKPRVATSSVVSKIAAYKRECPSIFSWEIRDRLLQEGVCNQDNIPSVSSIN 560
Query: 136 RIIRTKVQQPFHPTPDGAGTGV-------------TAPGHTIXXXXXXXXXXXXXNDPVG 182
R++R+ + + A TG+ TA H +
Sbjct: 561 RVLRSLSNE--NQRHLVAATGMYDKLSLLSGQPWSTAAAHAAWYSSAAAAHGYASSTFPN 734
Query: 183 SYSINGILGIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTL---------------- 226
+ G+ GI NG + + G H+ T
Sbjct: 735 CGAYGGLTGIGIINGMSTAHAVASINQSNS---GVNNYHVQSTTDSSDKLKSEKYSESIA 905
Query: 227 -RDVSEGSVPNGDSQSGVDS--------LRKHLRAD--TFTQQQLEALDRVFERPSYPDV 275
+ + S P + SGV S L++ L+ + +F+ QL++L++ FER YPDV
Sbjct: 906 HSESNASSEPGNEYMSGVKSENDDMRIKLKRKLQRNRTSFSTDQLDSLEKEFERTHYPDV 1085
Query: 276 F 276
F
Sbjct: 1086F 1088
>dbj|AK012493.1|AK012493 Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2700066P22:paired box gene 3,
full insert sequence
Length = 1637
Score = 202 bits (513), Expect = 6e-50
Identities = 122/272 (44%), Positives = 150/272 (54%), Gaps = 8/272 (2%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 195 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 374
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 375 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 554
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
RI+R+K G G A ++ +SI+GIL
Sbjct: 555 RILRSKF---------GKGEEEEA---------DLERKEAEESEKKAKHSIDGILS---- 668
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS-----LRKHL 250
S P D S +DS L++
Sbjct: 669 ----------------------------------ERASAPQSDEGSDIDSEPDLPLKRKQ 746
Query: 251 RAD--TFTQQQLEALDRVFERPSYPDVFQASE 280
R TFT +QLE L+R FER YPD++ E
Sbjct: 747 RGSRTTFTAEQLEELERAFERTHYPDIYTREE 842
>ref|NM_079889.1| Drosophila melanogaster eyeless (ey), mRNA
Length = 2848
Score = 201 bits (512), Expect = 8e-50
Identities = 100/168 (59%), Positives = 122/168 (72%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFV GRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 200 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 379
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VAT +VV KI++YKR+ P++FAWEIR +LL+E +C ND +PSVSSIN
Sbjct: 380 SIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSIN 559
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS 183
R++R Q G+G+ T+ G++I N GS
Sbjct: 560 RVLRNLAAQK-EQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGS 700
>emb|X79493.1|DMEYEL29 D.melanogaster ey mRNA (exons 2-9)
Length = 2848
Score = 201 bits (512), Expect = 8e-50
Identities = 100/168 (59%), Positives = 122/168 (72%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFV GRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 200 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 379
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VAT +VV KI++YKR+ P++FAWEIR +LL+E +C ND +PSVSSIN
Sbjct: 380 SIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSIN 559
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGS 183
R++R Q G+G+ T+ G++I N GS
Sbjct: 560 RVLRNLAAQK-EQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGS 700
>gb|AF053458.2|AF053458 Acropora millepora transcription factor Pax-A (PaxA) mRNA, complete
cds
Length = 4685
Score = 201 bits (510), Expect = 1e-49
Identities = 96/123 (78%), Positives = 105/123 (85%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
GGVNQLGGVFVNGRPLPD +R RIVELAH GVRP +ISRQL VSHGCVSKILGRYYETGS
Sbjct: 167 GGVNQLGGVFVNGRPLPDYMRHRIVELAHCGVRPSEISRQLLVSHGCVSKILGRYYETGS 346
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
++PG IGGSKPKVATP+VV KI YK NP +FAWEIR LL +G+CD VPSVSSINR
Sbjct: 347 VRPGAIGGSKPKVATPRVVSKILAYKEDNPCIFAWEIRNNLLSDGVCDKSNVPSVSSINR 526
Query: 137 IIR 139
I+R
Sbjct: 527 ILR 535
>gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome 2L, region 33B-33C, BAC clone
BACR02B06, complete sequence
Length = 174314
Score = 200 bits (509), Expect = 2e-49
Identities = 115/265 (43%), Positives = 152/265 (56%), Gaps = 1/265 (0%)
Frame = -2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 75973 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 75794
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR +L+REG+CD T PSVS+I+R
Sbjct: 75793 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISR 75614
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
++R G AP ND ++ G P +
Sbjct: 75613 LVR----------------GRDAP---------------LDND------MSSASGSPAGD 75545
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTF 255
G K + H G S+ + + +S+ G+ RK R TF
Sbjct: 75544 GTKASSSCGSDVSGGHHNNG-----------KPSDEDISDCESEPGIALKRKQRRCRTTF 75398
Query: 256 TQQQLEALDRVFERPSYPDVFQASE 280
+ QL+ L+R FER YPD++ E
Sbjct: 75397 SASQLDELERAFERTQYPDIYTREE 75323
>gb|AE003634.1|AE003634 Drosophila melanogaster genomic scaffold 142000013386055 section 27 of
63, complete sequence
Length = 264752
Score = 200 bits (509), Expect = 2e-49
Identities = 115/265 (43%), Positives = 152/265 (56%), Gaps = 1/265 (0%)
Frame = -1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 260141 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 259962
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR +L+REG+CD T PSVS+I+R
Sbjct: 259961 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISR 259782
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
++R G AP ND ++ G P +
Sbjct: 259781 LVR----------------GRDAP---------------LDND------MSSASGSPAGD 259713
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTF 255
G K + H G S+ + + +S+ G+ RK R TF
Sbjct: 259712 GTKASSSCGSDVSGGHHNNG-----------KPSDEDISDCESEPGIALKRKQRRCRTTF 259566
Query: 256 TQQQLEALDRVFERPSYPDVFQASE 280
+ QL+ L+R FER YPD++ E
Sbjct: 259565 SASQLDELERAFERTQYPDIYTREE 259491
>gb|M14548.1|DROPRD D.melanogaster paired gene (prd) encoding a segmentation protein,
complete cds
Length = 3042
Score = 200 bits (509), Expect = 2e-49
Identities = 115/265 (43%), Positives = 152/265 (56%), Gaps = 1/265 (0%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 937 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 1116
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR +L+REG+CD T PSVS+I+R
Sbjct: 1117 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISR 1296
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
++R G AP ND ++ G P +
Sbjct: 1297 LVR----------------GRDAP---------------LDND------MSSASGSPAGD 1365
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTF 255
G K + H G S+ + + +S+ G+ RK R TF
Sbjct: 1366 GTKASSSCGSDVSGGHHNNG-----------KPSDEDISDCESEPGIALKRKQRRCRTTF 1512
Query: 256 TQQQLEALDRVFERPSYPDVFQASE 280
+ QL+ L+R FER YPD++ E
Sbjct: 1513 SASQLDELERAFERTQYPDIYTREE 1587
>ref|NM_078832.1| Drosophila melanogaster paired (prd), mRNA
Length = 2348
Score = 200 bits (509), Expect = 2e-49
Identities = 115/265 (43%), Positives = 152/265 (56%), Gaps = 1/265 (0%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 254 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 433
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR +L+REG+CD T PSVS+I+R
Sbjct: 434 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISR 613
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
++R G AP ND ++ G P +
Sbjct: 614 LVR----------------GRDAP---------------LDND------MSSASGSPAGD 682
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTF 255
G K + H G S+ + + +S+ G+ RK R TF
Sbjct: 683 GTKASSSCGSDVSGGHHNNG-----------KPSDEDISDCESEPGIALKRKQRRCRTTF 829
Query: 256 TQQQLEALDRVFERPSYPDVFQASE 280
+ QL+ L+R FER YPD++ E
Sbjct: 830 SASQLDELERAFERTQYPDIYTREE 904
>gb|AY059447.1| Drosophila melanogaster GH22686 full length cDNA
Length = 2348
Score = 200 bits (509), Expect = 2e-49
Identities = 115/265 (43%), Positives = 152/265 (56%), Gaps = 1/265 (0%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 254 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 433
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKP++ATP++ ++I EYKR +P MF+WEIR +L+REG+CD T PSVS+I+R
Sbjct: 434 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISR 613
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
++R G AP ND ++ G P +
Sbjct: 614 LVR----------------GRDAP---------------LDND------MSSASGSPAGD 682
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTF 255
G K + H G S+ + + +S+ G+ RK R TF
Sbjct: 683 GTKASSSCGSDVSGGHHNNG-----------KPSDEDISDCESEPGIALKRKQRRCRTTF 829
Query: 256 TQQQLEALDRVFERPSYPDVFQASE 280
+ QL+ L+R FER YPD++ E
Sbjct: 830 SASQLDELERAFERTQYPDIYTREE 904
>gb|U96193.1|HLU96193 Hydra littoralis Pax-A mRNA, complete cds
Length = 2303
Score = 200 bits (508), Expect = 2e-49
Identities = 97/123 (78%), Positives = 106/123 (85%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
GGVNQLGGVFVNGRPLPD +R RI+ELA GVRP +ISRQL VSHGCVSKILGRYYETGS
Sbjct: 194 GGVNQLGGVFVNGRPLPDYMRHRIIELAQCGVRPSEISRQLLVSHGCVSKILGRYYETGS 373
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
++PG IGGSKPKVATPKVV +I + K +NP MFAWEIR LL EGICDN VPSVSSINR
Sbjct: 374 VRPGAIGGSKPKVATPKVVCRIVKLKEENPCMFAWEIRNSLLAEGICDNGNVPSVSSINR 553
Query: 137 IIR 139
I+R
Sbjct: 554 ILR 562
>emb|AJ000938.1|OLJ000938 Oryzias latipes, Pax6 gene
Length = 2178
Score = 200 bits (508), Expect = 2e-49
Identities = 130/314 (41%), Positives = 160/314 (50%), Gaps = 53/314 (16%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR----------------- 58
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 405 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHDEVQVLDSEKV*YLF 584
Query: 59 ------------------------VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKV 94
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+V
Sbjct: 585 EPS*LFQ*KS*IMYVNCVFLFPIQVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEV 764
Query: 95 VDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-- 152
V KIA+YKR+ P++FAWEIR +LL EGIC ND +PSVSSINR++R + DG
Sbjct: 765 VAKIAQYKRECPSIFAWEIRDRLLSEGICTNDNIPSVSSINRVLRNLASEKQQMGADGMY 944
Query: 153 ---------AGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKRE 203
GT T PG Y + G P +G ++
Sbjct: 945 DKLRMLNGQTGTWGTRPGW---------------------YPGTSVPGQPNQDGCQQ--- 1052
Query: 204 EVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEA 262
+ G G + +S + ++Q + RK R T FTQ+Q+EA
Sbjct: 1053-----------QDGAGEN----TNSISSNGEDSEETQMRLQLKRKLQRNRTSFTQEQIEA 1187
Query: 263 LDRVFERPSYPDVF 276
L++ FER YPDVF
Sbjct: 1188LEKEFERTHYPDVF 1229
>emb|Y09975.1|PMPAX6 P.mammillata mRNA for Pax-6
Length = 1741
Score = 199 bits (505), Expect = 5e-49
Identities = 120/272 (44%), Positives = 160/272 (58%), Gaps = 2/272 (0%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGG+FVNGRPLPD +RQ+IVE AH G RPCDISR L+VS+GCVSKIL RYYETG
Sbjct: 205 HSGVNQLGGMFVNGRPLPDSIRQKIVEFAHNGARPCDISRILQVSNGCVSKILARYYETG 384
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
+I+P IGGSKP+VATP+VV+KIA YKR+ P++FAWEIR +LL E +C+ + +PSVSSIN
Sbjct: 385 TIRPRAIGGSKPRVATPQVVNKIAMYKRECPSIFAWEIRDRLLNEAVCNAENIPSVSSIN 564
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
R++R +G V + G++ N +S + + +
Sbjct: 565 RVLRNL---------NGENGRVFSEGNS-----------PNKNHLPDDWSSSNWYDLNKQ 684
Query: 196 N-GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT 254
N + EEV V + D+ + + RK R T
Sbjct: 685 NHRHESSSEEVSVCN--------------------KDDQQMTKDTNARLQLKRKLQRNRT 804
Query: 255 -FTQQQLEALDRVFERPSYPDVFQASEHIKSE 285
F+Q+Q+EAL++ FER YPDVF A E + S+
Sbjct: 805 SFSQEQVEALEKEFERTHYPDVF-ARERLASK 897
>emb|Z35141.1|HSPAX7GE H.sapiens Pax-7 gene for transcription factor
Length = 1503
Score = 197 bits (502), Expect = 1e-48
Identities = 139/363 (38%), Positives = 186/363 (50%), Gaps = 4/363 (1%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 208 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 387
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS--VSS 133
I+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIR +LL++G CD TVPS VSS
Sbjct: 388 IRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSS 567
Query: 134 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 193
I+R++R K + + +SI+GIL
Sbjct: 568 ISRVLRIKFGK--------------------KEEEDEADKKEDDGEKKAKHSIDGIL--- 678
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA- 252
G+K R + EGS + +S+ + RK R+
Sbjct: 679 ---GDKGNR--------------------------LDEGS--DVESEPDLPLKRKQRRSR 765
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANP 312
TFT +QLE L++ FER YPD++ E + + E + S+ A
Sbjct: 766 TTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRARWRK 924
Query: 313 ELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYS 372
+ G+N + + G T +P PP+ P +YPT+T+ S+ G+
Sbjct: 925 QAGANQLAAFNHLLPGG--FPPTGMPTLPPYQLP--DSTYPTTTI------SQDGGSTVH 1074
Query: 373 HPQ 375
PQ
Sbjct: 1075RPQ 1083
>ref|NM_002584.1| Homo sapiens paired box gene 7 (PAX7), transcript variant 1, mRNA
Length = 2272
Score = 197 bits (502), Expect = 1e-48
Identities = 139/363 (38%), Positives = 186/363 (50%), Gaps = 4/363 (1%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 705 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 884
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS--VSS 133
I+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIR +LL++G CD TVPS VSS
Sbjct: 885 IRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSS 1064
Query: 134 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 193
I+R++R K + + +SI+GIL
Sbjct: 1065ISRVLRIKFGK--------------------KEEEDEADKKEDDGEKKAKHSIDGIL--- 1175
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA- 252
G+K R + EGS + +S+ + RK R+
Sbjct: 1176---GDKGNR--------------------------LDEGS--DVESEPDLPLKRKQRRSR 1262
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANP 312
TFT +QLE L++ FER YPD++ E + + E + S+ A
Sbjct: 1263TTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRARWRK 1421
Query: 313 ELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYS 372
+ G+N + + G T +P PP+ P +YPT+T+ S+ G+
Sbjct: 1422QAGANQLAAFNHLLPGG--FPPTGMPTLPPYQLP--DSTYPTTTI------SQDGGSTVH 1571
Query: 373 HPQ 375
PQ
Sbjct: 1572RPQ 1580
>emb|X96743.1|HSPAX7M H.sapiens mRNA for paired box containing transcription factor, PAX7
Length = 2272
Score = 197 bits (502), Expect = 1e-48
Identities = 139/363 (38%), Positives = 186/363 (50%), Gaps = 4/363 (1%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 705 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 884
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS--VSS 133
I+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIR +LL++G CD TVPS VSS
Sbjct: 885 IRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSS 1064
Query: 134 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIP 193
I+R++R K + + +SI+GIL
Sbjct: 1065ISRVLRIKFGK--------------------KEEEDEADKKEDDGEKKAKHSIDGIL--- 1175
Query: 194 RSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA- 252
G+K R + EGS + +S+ + RK R+
Sbjct: 1176---GDKGNR--------------------------LDEGS--DVESEPDLPLKRKQRRSR 1262
Query: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANP 312
TFT +QLE L++ FER YPD++ E + + E + S+ A
Sbjct: 1263TTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRARWRK 1421
Query: 313 ELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYS 372
+ G+N + + G T +P PP+ P +YPT+T+ S+ G+
Sbjct: 1422QAGANQLAAFNHLLPGG--FPPTGMPTLPPYQLP--DSTYPTTTI------SQDGGSTVH 1571
Query: 373 HPQ 375
PQ
Sbjct: 1572RPQ 1580
>emb|X95594.1|LSPAX6GEN L.sanguineus pax6 gene
Length = 1483
Score = 197 bits (501), Expect = 1e-48
Identities = 92/124 (74%), Positives = 108/124 (86%)
Frame = +2
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQRIVELAH G RPCDISR L+VS+GCV+KILGRYYETG
Sbjct: 410 HSGVNQLGGVFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVTKILGRYYETG 589
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA YKR+ P++FAWEIR +LL + +C+ D +PSVSSIN
Sbjct: 590 SIRPRAIGGSKPRVATPEVVGKIAHYKRECPSIFAWEIRDRLLSDAVCNQDNIPSVSSIN 769
Query: 136 RIIR 139
R++R
Sbjct: 770 RVLR 781
Score = 39.3 bits (90), Expect = 0.68
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 228 DVSEGSVPNG---DSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 276
D G PNG + Q + RK R T FT Q+EAL++ FER YPDVF
Sbjct: 1001 DSHSGDTPNGNESEEQMRIRLKRKLQRNRTSFTNAQIEALEKEFERTHYPDVF 1159
>gb|AC007582.7| Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone
BACR17E16, complete sequence
Length = 180162
Score = 196 bits (499), Expect = 3e-48
Identities = 140/406 (34%), Positives = 189/406 (46%), Gaps = 44/406 (10%)
Frame = -3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R++IVE+A GVRPC ISRQLRVSHGCVSKIL R+ ETGS
Sbjct: 129412 GRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGS 129233
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKP+VATP + +I E K+ P +F+WEIRA+L+ G+CD PSVSSI+R
Sbjct: 129232 IRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISR 129053
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
++R G+GT S+SI+GILG
Sbjct: 129052 LLRGS---------SGSGT---------------------------SHSIDGILG----- 128996
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTF 255
GG G V D++ V RK R+ TF
Sbjct: 128995 -------------------GGAG--------SVGSEDESEDDAEPSVQLKRKQRRSRTTF 128897
Query: 256 TQQQLEALDRVFERPSYPDVFQASEHIKS--------------------EQGNEYSLPAL 295
+ Q++AL+R+F R YPDV+ E +S +Q N +P+
Sbjct: 128896 SNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSF 128717
Query: 296 TPGLDE--VKSSLSASANPELGSNVSGTQTYP--------------VVTGRDMTSTTLPG 339
P + SA+ P +G ++ +Q++P V + +ST+
Sbjct: 128716 APTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTS 128537
Query: 340 YPPHLPPTGQGSYP-------TSTLAGMVPGSEFSGNPYSHPQYTA 378
H P Q P TST + + YS PQ A
Sbjct: 128536 SAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTPA 128399
Score = 153 bits (386), Expect = 3e-35
Identities = 70/103 (67%), Positives = 89/103 (85%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+A GVRPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 141033 GRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGS 141212
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
I+PGVIGGSKPKV +P++ +I E +++NP++F+WEIR +L++
Sbjct: 141213 IRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIK 141341
Score = 48.1 bits (113), Expect = 0.001
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Frame = +1
Query: 231 EGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNE 289
+ + + +S+ G+ RK R+ TFT +QLEAL+R F R YPDV+ E ++ E
Sbjct: 150730 DSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTE 150909
Query: 290 YSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLP-GYPPHLPPTG 348
+ S +N L SG+ V G ++ T P GY P +
Sbjct: 150910 ARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVGVG--LSGATAPLGYGPLGVGSM 151083
Query: 349 QGSYP----TSTLAGMVPGSEFSGN-PYSH 373
G P T+T AGM G + + P SH
Sbjct: 151084 AGYSPAPGTTATGAGMNDGVHHAAHAPSSH 151173
>gb|AE003466.1|AE003466 Drosophila melanogaster genomic scaffold 142000013386038 section 15 of
15, complete sequence
Length = 283099
Score = 196 bits (499), Expect = 3e-48
Identities = 140/406 (34%), Positives = 189/406 (46%), Gaps = 44/406 (10%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R++IVE+A GVRPC ISRQLRVSHGCVSKIL R+ ETGS
Sbjct: 43688 GRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGS 43867
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKP+VATP + +I E K+ P +F+WEIRA+L+ G+CD PSVSSI+R
Sbjct: 43868 IRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISR 44047
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
++R G+GT S+SI+GILG
Sbjct: 44048 LLRGS---------SGSGT---------------------------SHSIDGILG----- 44104
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTF 255
GG G V D++ V RK R+ TF
Sbjct: 44105 -------------------GGAG--------SVGSEDESEDDAEPSVQLKRKQRRSRTTF 44203
Query: 256 TQQQLEALDRVFERPSYPDVFQASEHIKS--------------------EQGNEYSLPAL 295
+ Q++AL+R+F R YPDV+ E +S +Q N +P+
Sbjct: 44204 SNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSF 44383
Query: 296 TPGLDE--VKSSLSASANPELGSNVSGTQTYP--------------VVTGRDMTSTTLPG 339
P + SA+ P +G ++ +Q++P V + +ST+
Sbjct: 44384 APTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTS 44563
Query: 340 YPPHLPPTGQGSYP-------TSTLAGMVPGSEFSGNPYSHPQYTA 378
H P Q P TST + + YS PQ A
Sbjct: 44564 SAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTPA 44701
Score = 153 bits (386), Expect = 3e-35
Identities = 70/103 (67%), Positives = 89/103 (85%)
Frame = -2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+A GVRPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 32067 GRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGS 31888
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLR 119
I+PGVIGGSKPKV +P++ +I E +++NP++F+WEIR +L++
Sbjct: 31887 IRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIK 31759
Score = 48.1 bits (113), Expect = 0.001
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Frame = -1
Query: 231 EGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNE 289
+ + + +S+ G+ RK R+ TFT +QLEAL+R F R YPDV+ E ++ E
Sbjct: 22369 DSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTE 22190
Query: 290 YSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLP-GYPPHLPPTG 348
+ S +N L SG+ V G ++ T P GY P +
Sbjct: 22189 ARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVGVG--LSGATAPLGYGPLGVGSM 22016
Query: 349 QGSYP----TSTLAGMVPGSEFSGN-PYSH 373
G P T+T AGM G + + P SH
Sbjct: 22015 AGYSPAPGTTATGAGMNDGVHHAAHAPSSH 21926
>gb|U20792.1|MMU20792 Mus musculus Pax7 mRNA, partial cds
Length = 872
Score = 196 bits (499), Expect = 3e-48
Identities = 139/346 (40%), Positives = 184/346 (53%), Gaps = 4/346 (1%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIV-ELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
G VNQLGGVF+NGRPLP+ +R +IV E+AH G+RPC ISRQLRVSHGCVSKIL RY ETG
Sbjct: 1 GRVNQLGGVFINGRPLPNHIRHKIVVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETG 180
Query: 76 SIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSI 134
SI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIR + L++G CD TVPSVSSI
Sbjct: 181 SIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRWLKDGHCDRSTVPSVSSI 360
Query: 135 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPR 194
+R++R K + D G G + +SI+GIL
Sbjct: 361 SRVLRIKFGK---KEDDEEGDKKEEDG-----------------EKKAKHSIDGIL---- 468
Query: 195 SNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-D 253
G+K R + EGS +S+ + RK R+
Sbjct: 469 --GDKGNR--------------------------LDEGS--GVESEPDLPLKRKQRRSRT 558
Query: 254 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEV-KSSLSASANP 312
TFT +QLE L++ FER YPD++ E + + LT +V S+ A
Sbjct: 559 TFTAEQLEELEKAFERTHYPDIYTREELAQRTK--------LTEARFQVWFSNRRARWRK 714
Query: 313 ELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLA 358
+ G+N + + G T +P PP+ P +YPT+T++
Sbjct: 715 QAGANQLAAFNHLLPGG--FPPTGMPTLPPYQLP--DSTYPTTTIS 840
>ref|NM_079139.1| Drosophila melanogaster gooseberry (gsb), mRNA
Length = 1284
Score = 196 bits (499), Expect = 3e-48
Identities = 140/406 (34%), Positives = 189/406 (46%), Gaps = 44/406 (10%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R++IVE+A GVRPC ISRQLRVSHGCVSKIL R+ ETGS
Sbjct: 61 GRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGS 240
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKP+VATP + +I E K+ P +F+WEIRA+L+ G+CD PSVSSI+R
Sbjct: 241 IRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISR 420
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
++R G+GT S+SI+GILG
Sbjct: 421 LLRGS---------SGSGT---------------------------SHSIDGILG----- 477
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTF 255
GG G V D++ V RK R+ TF
Sbjct: 478 -------------------GGAG--------SVGSEDESEDDAEPSVQLKRKQRRSRTTF 576
Query: 256 TQQQLEALDRVFERPSYPDVFQASEHIKS--------------------EQGNEYSLPAL 295
+ Q++AL+R+F R YPDV+ E +S +Q N +P+
Sbjct: 577 SNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSF 756
Query: 296 TPGLDE--VKSSLSASANPELGSNVSGTQTYP--------------VVTGRDMTSTTLPG 339
P + SA+ P +G ++ +Q++P V + +ST+
Sbjct: 757 APTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTS 936
Query: 340 YPPHLPPTGQGSYP-------TSTLAGMVPGSEFSGNPYSHPQYTA 378
H P Q P TST + + YS PQ A
Sbjct: 937 SAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTPA 1074
>emb|X16992.1|DMPOXMESO D.melanogaster DNA for paired domain gene Pox meso
Length = 420
Score = 196 bits (498), Expect = 3e-48
Identities = 96/135 (71%), Positives = 111/135 (82%)
Frame = +1
Query: 8 DPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 67
DP S ++G VNQLGGVFVNGRPLP+ R RIVELA G+RPCDISRQLRVSHGCVSKI
Sbjct: 10 DPESQCPQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKI 189
Query: 68 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDT 127
L RY+ETGSI PG IGGSKP+V TPKVV+ I E K+++P +FAWEIR +LL EGICD
Sbjct: 190 LARYHETGSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTN 369
Query: 128 VPSVSSINRIIRTKV 142
VPSVSSI+RI+R K+
Sbjct: 370 VPSVSSISRILRNKL 414
>gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome 3R, region 85A-85A, BAC clone
BACR33N15, complete sequence
Length = 187701
Score = 195 bits (495), Expect = 7e-48
Identities = 98/152 (64%), Positives = 118/152 (77%), Gaps = 2/152 (1%)
Frame = +3
Query: 15 RHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 74
++G VNQLGGVFVNGRPLP+ R RIVELA G+RPCDISRQLRVSHGCVSKIL RY+ET
Sbjct: 140151 QYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHET 140330
Query: 75 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSI 134
GSI PG IGGSKP+V TPKVV+ I E K+++P +FAWEIR +LL EGICD VPSVSSI
Sbjct: 140331 GSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSI 140510
Query: 135 NRIIRTKVQQPFHPTPDGA--GTGVTAPGHTI 164
+RI+R K+ H G G+G ++ G ++
Sbjct: 140511 SRILRNKLGSLGHQHTPGTVMGSGSSSGGGSV 140606
>emb|Y19195.1|MMUY19195 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-3NEU
Length = 1470
Score = 195 bits (495), Expect = 7e-48
Identities = 96/143 (67%), Positives = 112/143 (78%), Gaps = 14/143 (9%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------ 58
S + H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 107 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDN 286
Query: 59 --VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQ 116
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +
Sbjct: 287 ENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDR 466
Query: 117 LLREGICDNDTVPSVSSINRIIR 139
LL EG+C ND +PSVSSINR++R
Sbjct: 467 LLSEGVCTNDNIPSVSSINRVLR 535
Score = 39.3 bits (90), Expect = 0.68
Identities = 40/164 (24%), Positives = 61/164 (36%), Gaps = 33/164 (20%)
Frame = +3
Query: 232 GSVPNGDSQSGVDSLRKHLRAD----------TFTQQQLEALDRVFERPSYPDVF----- 276
G N S +G DS +R +FTQ+Q+EAL++ FER YPDVF
Sbjct: 702 GENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 881
Query: 277 ------------------QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNV 318
+A + + N+ + TP + SS S S +
Sbjct: 882 AAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPT 1061
Query: 319 SGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
+ ++ + T T L LPP P+ T+A +P
Sbjct: 1062TPVSSFTSGSMLGRTDTALTNTYSALPP-----MPSFTMANNLP 1178
>gb|AE003678.2|AE003678 Drosophila melanogaster genomic scaffold 142000013386035 section 3 of
105, complete sequence
Length = 234138
Score = 195 bits (495), Expect = 7e-48
Identities = 98/152 (64%), Positives = 118/152 (77%), Gaps = 2/152 (1%)
Frame = -2
Query: 15 RHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 74
++G VNQLGGVFVNGRPLP+ R RIVELA G+RPCDISRQLRVSHGCVSKIL RY+ET
Sbjct: 121310 QYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHET 121131
Query: 75 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSI 134
GSI PG IGGSKP+V TPKVV+ I E K+++P +FAWEIR +LL EGICD VPSVSSI
Sbjct: 121130 GSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSI 120951
Query: 135 NRIIRTKVQQPFHPTPDGA--GTGVTAPGHTI 164
+RI+R K+ H G G+G ++ G ++
Sbjct: 120950 SRILRNKLGSLGHQHTPGTVMGSGSSSGGGSV 120855
>ref|NM_079552.1| Drosophila melanogaster Paired box mesodermal (Pox-m), mRNA
Length = 1209
Score = 195 bits (495), Expect = 7e-48
Identities = 98/152 (64%), Positives = 118/152 (77%), Gaps = 2/152 (1%)
Frame = +1
Query: 15 RHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 74
++G VNQLGGVFVNGRPLP+ R RIVELA G+RPCDISRQLRVSHGCVSKIL RY+ET
Sbjct: 121 QYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHET 300
Query: 75 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSI 134
GSI PG IGGSKP+V TPKVV+ I E K+++P +FAWEIR +LL EGICD VPSVSSI
Sbjct: 301 GSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSI 480
Query: 135 NRIIRTKVQQPFHPTPDGA--GTGVTAPGHTI 164
+RI+R K+ H G G+G ++ G ++
Sbjct: 481 SRILRNKLGSLGHQHTPGTVMGSGSSSGGGSV 576
>gb|U14621.1|PLU14621 Paracentrotus lividus Pax-6 (suPax-6) mRNA, complete cds
Length = 5015
Score = 194 bits (494), Expect = 1e-47
Identities = 92/124 (74%), Positives = 107/124 (86%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 718 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 897
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP VV +IA YKR+ P++FAWEIR +LL E IC+ + +PSVSSIN
Sbjct: 898 SIRPRAIGGSKPRVATPHVVTRIAHYKRECPSIFAWEIRDRLLAEKICNQENIPSVSSIN 1077
Query: 136 RIIR 139
R++R
Sbjct: 1078RVLR 1089
Score = 39.3 bits (90), Expect = 0.68
Identities = 43/170 (25%), Positives = 62/170 (36%), Gaps = 24/170 (14%)
Frame = +1
Query: 238 DSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF-------------------- 276
D+Q+ + RK R T FT QQ+E L++ FER YPDVF
Sbjct: 1288 DAQARLRLKRKLQRNRTSFTAQQIEELEKEFERTHYPDVFARERLAQKIDLPEARIQVWF 1467
Query: 277 ---QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMT 333
+A + + N+ A G+ SS ++ +NVS Q P + M
Sbjct: 1468 SNRRAKWRREEKLRNQRRQQAEVGGVHTQSSSHLPLSSGYSSNNVSVYQPIPQPSAATMV 1647
Query: 334 STTLPGYPPHLPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAW 383
T P +PP S + GM P S H Y+ +
Sbjct: 1648 PRTAPDSYSAIPPMPSFSMASGPNIGMQPRDTSSYTRMLHQPTHGYDSLY 1797
>emb|AJ292077.1|MMU292077 Mus musculus partial mRNA for paired box protein (Pax6 gene), clone
PAX6-9Neu
Length = 1462
Score = 159 bits (401), Expect(2) = 1e-47
Identities = 118/354 (33%), Positives = 161/354 (45%), Gaps = 38/354 (10%)
Frame = +1
Query: 47 GVRPCDISRQLR--------------VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATP 92
G RPCDISR L+ VS+GCVSKILGRYYETGSI+P IGGSKP+VATP
Sbjct: 208 GARPCDISRILQTHADAKVQVLDNENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATP 387
Query: 93 KVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG 152
+VV KIA+YKR+ P++FAWEIR +LL EG+C ND +PSVSSINR++R + DG
Sbjct: 388 EVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADG 567
Query: 153 AGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSNGEKRKREEVEVYTDPA 212
G Y + G P +G +++
Sbjct: 568 ----------MYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQ----------- 684
Query: 213 HIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPS 271
GGG +S + ++Q + RK R T FTQ+Q+EAL++ FER
Sbjct: 685 --EGGGE-----NTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTH 843
Query: 272 YPDVF-----------------------QASEHIKSEQGNEYSLPALTPGLDEVKSSLSA 308
YPDVF +A + + N+ + TP + SS S
Sbjct: 844 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFST 1023
Query: 309 SANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGSYPTSTLAGMVP 362
S + + ++ + T T L LPP P+ T+A +P
Sbjct: 1024SVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPP-----MPSFTMANNLP 1170
Score = 57.4 bits (137), Expect(2) = 1e-47
Identities = 27/37 (72%), Positives = 29/37 (77%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQG 47
S + H GVNQLGGVFVNGRPLPD RQ+IVELA G
Sbjct: 107 SMQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAGPG 217
>gb|U73855.1|BTU73855 Bos taurus Pax6 mRNA, partial cds
Length = 438
Score = 194 bits (492), Expect = 2e-47
Identities = 95/138 (68%), Positives = 110/138 (78%), Gaps = 14/138 (10%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR--------------VSH 61
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+ VS+
Sbjct: 13 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSN 192
Query: 62 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREG 121
GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LL EG
Sbjct: 193 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEG 372
Query: 122 ICDNDTVPSVSSINRIIR 139
+C ND +PSVSSINR++R
Sbjct: 373 VCTNDNIPSVSSINRVLR 426
>emb|AJ223441.1|BFL223441 Branchiostoma floridae Pax6 gene (AmphiPax6), clone J2
Length = 4654
Score = 192 bits (489), Expect = 4e-47
Identities = 120/270 (44%), Positives = 158/270 (58%), Gaps = 6/270 (2%)
Frame = +1
Query: 13 MHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 72
M RH GVNQLGGVFV+GRPLPD RQ+IVELAHQG RPCDISR L+VS+G YY
Sbjct: 628 MGRHSGVNQLGGVFVSGRPLPDSTRQKIVELAHQGARPCDISRLLQVSNG--------YY 783
Query: 73 ETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVS 132
ETGSI+P IGGSKP+VATP+VV KIA++KR+ P++FAWEIR +LL EGIC N+ +PSVS
Sbjct: 784 ETGSIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSEGICTNENIPSVS 963
Query: 133 SINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGI 192
SINR++R + + +A + P
Sbjct: 964 SINRVLRNLAS----GEKNTLQSLQSADPQMLEKLRLLNGNAWPHPGPWPYPPSTAGAPP 1131
Query: 193 PRSNGEKRKREEVEVYTDPAHIRGGGGL-HLVWTL---RDVSEGSVPNGDSQSGVDSLRK 248
P++NG ++E G G L + TL +D +GS + D L++
Sbjct: 1132PQTNGNVTTKKE-----------GDGKLASQILTLHGYQDQGDGSNDDSDEAQARLRLKR 1278
Query: 249 HLRAD--TFTQQQLEALDRVFERPSYPDVF 276
L+ + +FTQ+Q+EAL++ FER YPDVF
Sbjct: 1279KLQRNRTSFTQEQIEALEKEFERTHYPDVF 1368
>gb|U20167.1|BFU20167 Branchiostoma floridae paired box transcription factor (AmphiPax-1)
mRNA, complete cds
Length = 2510
Score = 192 bits (487), Expect = 6e-47
Identities = 118/272 (43%), Positives = 150/272 (54%), Gaps = 9/272 (3%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELAH G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 220 GEVNQLGGVFVNGRPLPNAIRLRIVELAHVGIRPCDISRQLRVSHGCVSKILARYNETGS 399
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP+VV I +YK +P +FAWEIR +LL EG+CD VPSVSSI+R
Sbjct: 400 ILPGAIGGSKPRVTTPEVVKAIKKYKTLDPGIFAWEIRDRLLAEGVCDKYNVPSVSSISR 579
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
I+R K+ G V H +P+ +Y + P +
Sbjct: 580 ILRNKIGNTTQLPDSPYGHPVKPEQH------------RPLYNPIYTYPVGPPAPAPGAP 723
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVP-NGDSQSGV-------DSLRK 248
G + + P H+R H V + VP N + Q+G +S R
Sbjct: 724 GVPNQSQ------IPMHMRHWPSPHTVSDILGFPRPGVPINANEQTGPVSGAISNESARY 885
Query: 249 HLR-ADTFTQQQLEALDRVFERPSYPDVFQAS 279
+ + + + + E+ YPDV Q+S
Sbjct: 886 QTQMGEGYGLNHMNQMQGQTEKVKYPDVSQSS 981
>gb|AF014370.1|AF014370 Danio rerio transcription factor PAX7E (pax7) mRNA, complete cds
Length = 2403
Score = 192 bits (487), Expect = 6e-47
Identities = 137/350 (39%), Positives = 184/350 (52%), Gaps = 8/350 (2%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 443 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 622
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVP-----S 130
I+PG IGGSKP+ VATP V +I EYKR+NP MF+WEIR +LL++G+CD TVP S
Sbjct: 623 IRPGAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEASS 802
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSI+R++R + F D + +SI+GIL
Sbjct: 803 VSSISRVLRAR----FGKKDD----------------DDECDKKDEDGEKKTKHSIDGIL 922
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G+K R + EGS + +S+ + RK
Sbjct: 923 ------GDKGNRTD--------------------------EGS--DVESEPDLPLKRKQR 1000
Query: 251 RA-DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSAS 309
R+ TFT +QLE L++ FER YPD++ E + + E + S+ A
Sbjct: 1001RSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRAR 1159
Query: 310 ANPELGSNVSGTQTYPVVTGRDMTS-TTLPGYPPHLPPTGQGSYPTSTLA 358
+ G+N + + G T TLP Y LP + +YP++TL+
Sbjct: 1160WRKQAGANQLAAFNHLLPGGFPPTGMPTLPTY--QLP---ESTYPSTTLS 1294
>gb|AF014369.1|AF014369 Danio rerio transcription factor PAX7D (pax7) mRNA, complete cds
Length = 2317
Score = 192 bits (487), Expect = 6e-47
Identities = 137/350 (39%), Positives = 184/350 (52%), Gaps = 8/350 (2%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 443 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 622
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVP-----S 130
I+PG IGGSKP+ VATP V +I EYKR+NP MF+WEIR +LL++G+CD TVP S
Sbjct: 623 IRPGAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEASS 802
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSI+R++R + F D + +SI+GIL
Sbjct: 803 VSSISRVLRAR----FGKKDD----------------DDECDKKDEDGEKKTKHSIDGIL 922
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G+K R + EGS + +S+ + RK
Sbjct: 923 ------GDKGNRTD--------------------------EGS--DVESEPDLPLKRKQR 1000
Query: 251 RA-DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSAS 309
R+ TFT +QLE L++ FER YPD++ E + + E + S+ A
Sbjct: 1001RSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRAR 1159
Query: 310 ANPELGSNVSGTQTYPVVTGRDMTS-TTLPGYPPHLPPTGQGSYPTSTLA 358
+ G+N + + G T TLP Y LP + +YP++TL+
Sbjct: 1160WRKQAGANQLAAFNHLLPGGFPPTGMPTLPTY--QLP---ESTYPSTTLS 1294
>gb|AF014368.1|AF014368 Danio rerio transcription factor PAX7C (pax7) mRNA, complete cds
Length = 2225
Score = 192 bits (487), Expect = 6e-47
Identities = 137/350 (39%), Positives = 184/350 (52%), Gaps = 8/350 (2%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 443 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 622
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVP-----S 130
I+PG IGGSKP+ VATP V +I EYKR+NP MF+WEIR +LL++G+CD TVP S
Sbjct: 623 IRPGAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEASS 802
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSI+R++R + F D + +SI+GIL
Sbjct: 803 VSSISRVLRAR----FGKKDD----------------DDECDKKDEDGEKKTKHSIDGIL 922
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G+K R + EGS + +S+ + RK
Sbjct: 923 ------GDKGNRTD--------------------------EGS--DVESEPDLPLKRKQR 1000
Query: 251 RA-DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSAS 309
R+ TFT +QLE L++ FER YPD++ E + + E + S+ A
Sbjct: 1001RSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF-------SNRRAR 1159
Query: 310 ANPELGSNVSGTQTYPVVTGRDMTS-TTLPGYPPHLPPTGQGSYPTSTLA 358
+ G+N + + G T TLP Y LP + +YP++TL+
Sbjct: 1160WRKQAGANQLAAFNHLLPGGFPPTGMPTLPTY--QLP---ESTYPSTTLS 1294
>gb|U22046.1|GGU22046 Gallus gallus Pax-1 (GPX-1) gene, partial cds
Length = 1033
Score = 192 bits (487), Expect = 6e-47
Identities = 96/144 (66%), Positives = 111/144 (76%), Gaps = 3/144 (2%)
Frame = +1
Query: 12 AMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 71
A H +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY
Sbjct: 76 AEHTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 255
Query: 72 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSV 131
ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD VPSV
Sbjct: 256 NETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSV 435
Query: 132 SSINRIIRTKV---QQPFHPTPDG 152
SSI+RI+R K+ QP P G
Sbjct: 436 SSISRILRNKIGSLSQPGGPYDGG 507
>emb|AL035562.14|HS1065O2 Human DNA sequence from clone RP5-1065O2 on chromosome 20p11.21-11.23
Contains a copy of the RPL41 gene for ribosomal protein
L41, an ANT2 (fibroblast adenine nucleotide translocator 2
(ADP,ATP carrier protein, ADP/ATP translocase))
pseudogene, the PAX>
Length = 127192
Score = 191 bits (486), Expect = 8e-47
Identities = 94/140 (67%), Positives = 109/140 (77%)
Frame = -3
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
SA +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 59990 SAEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 59811
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
Y ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD VPS
Sbjct: 59810 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 59631
Query: 131 VSSINRIIRTKVQQPFHPTP 150
VSSI+RI+R K+ P P
Sbjct: 59630 VSSISRILRNKIGSLAQPGP 59571
>gb|AC087416.16|AC087416 Mus musculus clone rp23-224l16 strain Black6, complete sequence
Length = 183347
Score = 191 bits (486), Expect = 8e-47
Identities = 94/140 (67%), Positives = 109/140 (77%)
Frame = -3
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
SA +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 18621 SAEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 18442
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
Y ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD VPS
Sbjct: 18441 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 18262
Query: 131 VSSINRIIRTKVQQPFHPTP 150
VSSI+RI+R K+ P P
Sbjct: 18261 VSSISRILRNKIGSLAQPGP 18202
>emb|AJ133503.1|MMU133503 Mus musculus pax1 gene, exons 1 and 2 (and joined CDS)
Length = 1285
Score = 191 bits (486), Expect = 8e-47
Identities = 94/140 (67%), Positives = 109/140 (77%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
SA +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 494 SAEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 673
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
Y ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD VPS
Sbjct: 674 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 853
Query: 131 VSSINRIIRTKVQQPFHPTP 150
VSSI+RI+R K+ P P
Sbjct: 854 VSSISRILRNKIGSLAQPGP 913
>gb|AF285175.1|AF285175 Mus musculus PAX1 gene, complete cds
Length = 17615
Score = 191 bits (486), Expect = 8e-47
Identities = 94/140 (67%), Positives = 109/140 (77%)
Frame = +2
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
SA +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 5876 SAEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 6055
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
Y ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD VPS
Sbjct: 6056 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 6235
Query: 131 VSSINRIIRTKVQQPFHPTP 150
VSSI+RI+R K+ P P
Sbjct: 6236 VSSISRILRNKIGSLAQPGP 6295
>emb|X15044.1|HSHUP48 Homo sapiens HuP48 gene paired domain
Length = 769
Score = 191 bits (486), Expect = 8e-47
Identities = 94/140 (67%), Positives = 109/140 (77%)
Frame = +1
Query: 11 SAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 70
SA +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 235 SAEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 414
Query: 71 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPS 130
Y ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD VPS
Sbjct: 415 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 594
Query: 131 VSSINRIIRTKVQQPFHPTP 150
VSSI+RI+R K+ P P
Sbjct: 595 VSSISRILRNKIGSLAQPGP 654
>gb|AF014367.1|AF014367 Danio rerio transcription factor PAX7A (pax7) mRNA, complete cds
Length = 2320
Score = 191 bits (485), Expect = 1e-46
Identities = 120/271 (44%), Positives = 154/271 (56%), Gaps = 7/271 (2%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 443 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 622
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVP-----S 130
I+PG IGGSKP+ VATP V +I EYKR+NP MF+WEIR +LL++G+CD TVP S
Sbjct: 623 IRPGAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEASS 802
Query: 131 VSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGIL 190
VSSI+R++R + F D + +SI+GIL
Sbjct: 803 VSSISRVLRAR----FGKKDD----------------DDECDKKDEDGEKKTKHSIDGIL 922
Query: 191 GIPRSNGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHL 250
G+K R + EGS + +S+ + RK
Sbjct: 923 ------GDKGNRTD--------------------------EGS--DVESEPDLPLKRKQR 1000
Query: 251 RA-DTFTQQQLEALDRVFERPSYPDVFQASE 280
R+ TFT +QLE L++ FER YPD++ E
Sbjct: 1001RSRTTFTAEQLEELEKAFERTHYPDIYTREE 1093
>ref|NM_008780.1| Mus musculus paired box gene 1 (Pax1), mRNA
Length = 2619
Score = 191 bits (485), Expect = 1e-46
Identities = 94/144 (65%), Positives = 110/144 (76%)
Frame = +1
Query: 7 ADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 66
A P + +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSK
Sbjct: 229 AGPRAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSK 408
Query: 67 ILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDND 126
IL RY ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD
Sbjct: 409 ILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKY 588
Query: 127 TVPSVSSINRIIRTKVQQPFHPTP 150
VPSVSSI+RI+R K+ P P
Sbjct: 589 NVPSVSSISRILRNKIGSLAQPGP 660
>gb|M69222.1|MUSPAX1A Mouse Pax-1 protein (Pax-1) mRNA, complete cds
Length = 2619
Score = 191 bits (485), Expect = 1e-46
Identities = 94/144 (65%), Positives = 110/144 (76%)
Frame = +1
Query: 7 ADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 66
A P + +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSK
Sbjct: 229 AGPRAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSK 408
Query: 67 ILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDND 126
IL RY ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD
Sbjct: 409 ILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKY 588
Query: 127 TVPSVSSINRIIRTKVQQPFHPTP 150
VPSVSSI+RI+R K+ P P
Sbjct: 589 NVPSVSSISRILRNKIGSLAQPGP 660
>ref|NM_006192.1| Homo sapiens paired box gene 1 (PAX1), mRNA
Length = 1323
Score = 189 bits (481), Expect = 3e-46
Identities = 92/135 (68%), Positives = 107/135 (79%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
+G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 13 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 192
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD VPSVSSI+
Sbjct: 193 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 372
Query: 136 RIIRTKVQQPFHPTP 150
RI+R K+ P P
Sbjct: 373 RILRNKIGSLAQPGP 417
>ref|NM_013942.1| Homo sapiens paired box gene 3 (Waardenburg syndrome 1) (PAX3),
transcript variant PAX3B, mRNA
Length = 841
Score = 189 bits (481), Expect = 3e-46
Identities = 91/126 (72%), Positives = 108/126 (85%), Gaps = 1/126 (0%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 237 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 416
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 417 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 596
Query: 136 RIIRTK 141
RI+R+K
Sbjct: 597 RILRSK 614
>gb|S69370.1|S69370 PAX3B=transcription factor {alternatively spliced} [human, adult
cerebellum, mRNA, 841 nt]
Length = 841
Score = 189 bits (481), Expect = 3e-46
Identities = 91/126 (72%), Positives = 108/126 (85%), Gaps = 1/126 (0%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 237 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 416
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 417 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 596
Query: 136 RIIRTK 141
RI+R+K
Sbjct: 597 RILRSK 614
>ref|NM_000438.2| Homo sapiens paired box gene 3 (Waardenburg syndrome 1) (PAX3),
transcript variant PAX3A, mRNA
Length = 1248
Score = 189 bits (481), Expect = 3e-46
Identities = 91/126 (72%), Positives = 108/126 (85%), Gaps = 1/126 (0%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 237 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 416
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 417 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 596
Query: 136 RIIRTK 141
RI+R+K
Sbjct: 597 RILRSK 614
>gb|S69369.1|S69369 PAX3A=transcription factor [human, adult cerebellum, mRNA, 1248 nt]
Length = 1248
Score = 189 bits (481), Expect = 3e-46
Identities = 91/126 (72%), Positives = 108/126 (85%), Gaps = 1/126 (0%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 237 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 416
Query: 77 IKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
I+PG IGGSKPK V TP V KI EYKR+NP MF+WEIR +LL++ +CD +TVPSVSSI+
Sbjct: 417 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 596
Query: 136 RIIRTK 141
RI+R+K
Sbjct: 597 RILRSK 614
>emb|AL079303.3|CNS00M8O Human chromosome 14 DNA sequence BAC R-964E11 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 199891
Score = 189 bits (481), Expect = 3e-46
Identities = 115/237 (48%), Positives = 139/237 (58%), Gaps = 25/237 (10%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 100524 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 100703
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 100704 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 100883
Query: 137 IIRTKV-----------QQPFHPTPDGA---------GTGVTAPGHTIXXXXXXXXXXXX 176
I+R K+ + PTP A + +TA +
Sbjct: 100884 ILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGS 101063
Query: 177 XNDP---VGSYSINGILGIPRSNGEKRKRE--EVEVYTDPAHIRGGGGLHLVWTLRD 228
P S+S+ ILGI + R E V+V P H RGG + +LRD
Sbjct: 101064 VAMPRTWPSSHSVTDILGIRSITDQGRGSEAGRVDVQRLPPHSRGGPS---ICSLRD 101225
>dbj|AB039660.1|AB039660 Lampetra japonica Pax-9 mRNA for paired box protein, complete cds
Length = 1977
Score = 189 bits (480), Expect = 4e-46
Identities = 92/144 (63%), Positives = 110/144 (75%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVE+A G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 387 GEVNQLGGVFVNGRPLPNAIRLRIVEMAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 566
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV+ I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 567 ILPGAIGGSKPRVTTPNVVNHIRTYKQRDPGIFAWEIRDKLLADGVCDKYNVPSVSSISR 746
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAP 160
I+R K+ P G+ + P
Sbjct: 747 ILRNKIGNLSQPPNAGSSSHYDGP 818
>gb|AY071593.1| Drosophila melanogaster RE64348 full length cDNA
Length = 2250
Score = 189 bits (480), Expect = 4e-46
Identities = 135/364 (37%), Positives = 180/364 (49%), Gaps = 7/364 (1%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R +IVE+A GVRPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 384 GRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGS 563
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKPKV +P++ +I E +++NP++F+WEIR +L++EG D PS SSI+R
Sbjct: 564 IRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD---PPSTSSISR 734
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
++R G+ G D Y+INGILG
Sbjct: 735 LLR------------GSDRG--------------------SEDGRKDYTINGILG----- 803
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTF 255
+ + + +S+ G+ RK R+ TF
Sbjct: 804 --------------------------------GRDSDISDTESEPGIPLKRKQRRSRTTF 887
Query: 256 TQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELG 315
T +QLEAL+R F R YPDV+ E ++ E + S +N L
Sbjct: 888 TAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLS 1067
Query: 316 SNVSGTQTYPVVTGRDMTSTTLP-GYPPHLPPTGQGSYP----TSTLAGMVPGSEFSGN- 369
SG+ V G ++ T P GY P + G P T+T AGM G + +
Sbjct: 1068PMNSGSSNVGVGVG--LSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDGVHHAAHA 1241
Query: 370 PYSH 373
P SH
Sbjct: 1242PSSH 1253
>dbj|AB020763.1|AB020763 Ptychodera flava mRNA for Pax19, complete cds
Length = 2892
Score = 189 bits (479), Expect = 5e-46
Identities = 91/133 (68%), Positives = 106/133 (79%)
Frame = +1
Query: 10 FSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 69
F G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL
Sbjct: 253 FGMEQTFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILA 432
Query: 70 RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVP 129
RY ETGSI PG IGGSKP+V TP VV+ I EYK+ +P +FAWEIR +L+ +G+CD VP
Sbjct: 433 RYNETGSILPGAIGGSKPRVTTPTVVNHIKEYKQHDPGIFAWEIRDRLMADGVCDKYNVP 612
Query: 130 SVSSINRIIRTKV 142
SVSSI+RI+R K+
Sbjct: 613 SVSSISRILRNKI 651
>gb|M20978.1|MUSHBPAXA Mouse Pax 1 homeo box DNA region, partial cds
Length = 420
Score = 189 bits (479), Expect = 5e-46
Identities = 90/127 (70%), Positives = 105/127 (81%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
HG VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSK+L RY ETG
Sbjct: 34 HGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKMLARYNETG 213
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI PG IGGSKP+V TP VV I +YK+ +P +FAWEIR +LL +G+CD VPSVSSI+
Sbjct: 214 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 393
Query: 136 RIIRTKV 142
RI+R K+
Sbjct: 394 RILRNKI 414
>gb|AF443223.1|AF443223 Mus musculus PAX6 mRNA, partial cds, alternatively spliced
Length = 1058
Score = 188 bits (478), Expect = 7e-46
Identities = 132/371 (35%), Positives = 177/371 (47%), Gaps = 24/371 (6%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYYETG
Sbjct: 13 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETG 192
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIR +LLR + + + +
Sbjct: 193 SIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLRNLASEKQQMGADGMYD 372
Query: 136 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRS 195
++ Q T G G + PG P
Sbjct: 373 KLRMLNGQTGSWGTRPGWYPGTSVPGQ------------------------------PTQ 462
Query: 196 NGEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT- 254
+G +++ GGG +S + ++Q + RK R T
Sbjct: 463 DGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQMRLQLKRKLQRNRTS 588
Query: 255 FTQQQLEALDRVFERPSYPDVF-----------------------QASEHIKSEQGNEYS 291
FTQ+Q+EAL++ FER YPDVF +A + + N+
Sbjct: 589 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR 768
Query: 292 LPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHLPPTGQGS 351
+ TP + SS S S + + ++ + T T L LPP
Sbjct: 769 QASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPP----- 933
Query: 352 YPTSTLAGMVP 362
P+ T+A +P
Sbjct: 934 MPSFTMANNLP 966
>dbj|AB021138.1|AB021138 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-I
Length = 3117
Score = 188 bits (477), Expect = 9e-46
Identities = 91/132 (68%), Positives = 106/132 (79%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 343 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 522
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIR +LL + ICD VPSVSSI+R
Sbjct: 523 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 702
Query: 137 IIRTKVQQPFHP 148
I+R K+ HP
Sbjct: 703 ILRNKIGNVLHP 738
>dbj|AB021141.1|AB021141 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-IV
Length = 3070
Score = 188 bits (477), Expect = 9e-46
Identities = 91/132 (68%), Positives = 106/132 (79%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 308 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 487
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIR +LL + ICD VPSVSSI+R
Sbjct: 488 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 667
Query: 137 IIRTKVQQPFHP 148
I+R K+ HP
Sbjct: 668 ILRNKIGNVLHP 703
>dbj|AB021139.1|AB021139 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-II
Length = 2885
Score = 188 bits (477), Expect = 9e-46
Identities = 91/132 (68%), Positives = 106/132 (79%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 110 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 289
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIR +LL + ICD VPSVSSI+R
Sbjct: 290 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 469
Query: 137 IIRTKVQQPFHP 148
I+R K+ HP
Sbjct: 470 ILRNKIGNVLHP 505
>dbj|AB021142.1|AB021142 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-V
Length = 3172
Score = 188 bits (477), Expect = 9e-46
Identities = 91/132 (68%), Positives = 106/132 (79%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 307 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 486
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIR +LL + ICD VPSVSSI+R
Sbjct: 487 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 666
Query: 137 IIRTKVQQPFHP 148
I+R K+ HP
Sbjct: 667 ILRNKIGNVLHP 702
>dbj|AB021140.1|AB021140 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-III
Length = 2310
Score = 188 bits (477), Expect = 9e-46
Identities = 91/132 (68%), Positives = 106/132 (79%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 308 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 487
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIR +LL + ICD VPSVSSI+R
Sbjct: 488 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 667
Query: 137 IIRTKVQQPFHP 148
I+R K+ HP
Sbjct: 668 ILRNKIGNVLHP 703
>dbj|AB021143.1|AB021143 Halocynthia roretzi Pax19 related mRNA, complete cds,
clone:HrPax19-VI
Length = 4044
Score = 188 bits (477), Expect = 9e-46
Identities = 91/132 (68%), Positives = 106/132 (79%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGG+FVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 340 GEVNQLGGIFVNGRPLPNTIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 519
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIR +LL + ICD VPSVSSI+R
Sbjct: 520 ILPGAIGGSKPRVTTPSVVNAIKDYKIRDPGIFAWEIRDRLLSDCICDKYNVPSVSSISR 699
Query: 137 IIRTKVQQPFHP 148
I+R K+ HP
Sbjct: 700 ILRNKIGNVLHP 735
>emb|AJ238974.1|BLA238974 Branchiostoma lanceolatum partial amphipax1 gene, exons 1-2 and
joined CDS
Length = 2753
Score = 187 bits (475), Expect = 2e-45
Identities = 91/126 (72%), Positives = 104/126 (82%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 2044 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 2223
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP+VV I +YK +P +FAWEIR +LL EG+CD VPSVSSI+R
Sbjct: 2224 ILPGAIGGSKPRVTTPEVVKAIKKYKTLDPGIFAWEIRDRLLAEGVCDKYNVPSVSSISR 2403
Query: 137 IIRTKV 142
I+R K+
Sbjct: 2404 ILRNKI 2421
>dbj|AB020762.1|AB020762 Ciona intestinalis mRNA for Pax19, complete cds
Length = 1698
Score = 187 bits (475), Expect = 2e-45
Identities = 90/132 (68%), Positives = 106/132 (80%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RI+ELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 136 GEVNQLGGVFVNGRPLPNALRLRIIELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 315
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV+ I +YK ++P +FAWEIR +LL + +CD VPSVSSI+R
Sbjct: 316 ILPGAIGGSKPRVTTPGVVNAIKDYKVRDPGIFAWEIRDRLLSDAVCDKYNVPSVSSISR 495
Query: 137 IIRTKVQQPFHP 148
I+R K+ HP
Sbjct: 496 ILRNKIGNVLHP 531
>emb|AJ010498.1|GTI010498 Girardia tigrina mRNA for DtPax-6 protein
Length = 2123
Score = 187 bits (474), Expect = 2e-45
Identities = 86/125 (68%), Positives = 107/125 (84%)
Frame = +3
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H G+NQLGG+FVNGRPLPDV RQRI+EL+ G RPCDISR L+VS+GCVSKIL RYYETG
Sbjct: 306 HSGINQLGGIFVNGRPLPDVTRQRIIELSQSGARPCDISRILQVSNGCVSKILCRYYETG 485
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKP IGGSKP+VAT VV K+ YK+++P+MFAWEIR + L++G+C+ D +PS+SSIN
Sbjct: 486 SIKPKAIGGSKPRVATNTVVRKVTIYKQESPSMFAWEIRDRPLQDGVCNQDNLPSISSIN 665
Query: 136 RIIRT 140
RI+R+
Sbjct: 666 RILRS 680
>emb|AJ238381.1|HSA238381 Homo sapiens pax9 gene, exons 1-2 and joined CDS
Length = 1840
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 1210 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 1389
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 1390 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 1569
Query: 137 IIRTKV 142
I+R K+
Sbjct: 1570 ILRNKI 1587
>gb|BC006930.1|BC006930 Mus musculus, paired box gene 9, clone IMAGE:3599040, mRNA
Length = 2319
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 860 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 1039
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 1040ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 1219
Query: 137 IIRTKV 142
I+R K+
Sbjct: 1220ILRNKI 1237
>ref|NM_006194.1| Homo sapiens paired box gene 9 (PAX9), mRNA
Length = 1630
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 407 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 586
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 587 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 766
Query: 137 IIRTKV 142
I+R K+
Sbjct: 767 ILRNKI 784
>gb|L09745.1|HUMPAX9 Homo sapiens paired-box containing (PAX9) gene, paired domain exon
Length = 667
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 32 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 211
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 212 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 391
Query: 137 IIRTKV 142
I+R K+
Sbjct: 392 ILRNKI 409
>emb|X92652.1|CHPAX9 G.domesticus mRNA for ChPax9 protein
Length = 1524
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 10 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 189
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 190 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 369
Query: 137 IIRTKV 142
I+R K+
Sbjct: 370 ILRNKI 387
>gb|BC005794.1|BC005794 Mus musculus, paired box gene 9, clone MGC:11500 IMAGE:3707718,
mRNA, complete cds
Length = 1635
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 178 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 357
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 358 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 537
Query: 137 IIRTKV 142
I+R K+
Sbjct: 538 ILRNKI 555
>gb|BC001159.1|BC001159 Homo sapiens, paired box gene 9, clone MGC:1535 IMAGE:3534582,
mRNA, complete cds
Length = 1683
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 205 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 384
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 385 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 564
Query: 137 IIRTKV 142
I+R K+
Sbjct: 565 ILRNKI 582
>emb|X82443.1|GGPAX9 Gallus gallus Pax-9 gene
Length = 807
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 111 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 290
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 291 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 470
Query: 137 IIRTKV 142
I+R K+
Sbjct: 471 ILRNKI 488
>ref|NM_011041.1| Mus musculus paired box gene 9 (Pax9), mRNA
Length = 2555
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 210 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 389
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 390 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 569
Query: 137 IIRTKV 142
I+R K+
Sbjct: 570 ILRNKI 587
>emb|X84000.1|MMRNAPAX9 M.musculus mRNA for Pax9
Length = 2555
Score = 186 bits (473), Expect = 3e-45
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 210 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 389
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 390 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 569
Query: 137 IIRTKV 142
I+R K+
Sbjct: 570 ILRNKI 587
>gb|U40932.1|DRU40932 Danio rerio transcription factor Pax9b (Pax9) mRNA, complete cds
Length = 1777
Score = 186 bits (472), Expect = 3e-45
Identities = 93/146 (63%), Positives = 109/146 (73%), Gaps = 12/146 (8%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 167 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 346
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD +PSVSSI+R
Sbjct: 347 ILPGAIGGSKPRVTTPNVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKFNLPSVSSISR 526
Query: 137 IIRTKV------------QQPFHPTP 150
I+R K+ +Q HP P
Sbjct: 527 ILRNKIGNLSQQNQYESSKQASHPQP 604
>emb|AJ311310.1|DJA311310 Dugesia japonica partial mRNA for Pax-6B protein
Length = 1801
Score = 186 bits (472), Expect = 3e-45
Identities = 86/125 (68%), Positives = 107/125 (84%)
Frame = +1
Query: 16 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 75
H G+NQLGG+FVNGRPLPDV RQRI+EL+ G RPCDISR L+VS+GCVSKIL RYY TG
Sbjct: 7 HSGINQLGGMFVNGRPLPDVTRQRIIELSQSGARPCDISRILQVSNGCVSKILCRYYGTG 186
Query: 76 SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSIN 135
SIKP IGGSKP+VAT VV K+ YK+++P+MFAWEIR +LL++G+C+ D +PS+SSIN
Sbjct: 187 SIKPKAIGGSKPRVATNTVVRKVTIYKQESPSMFAWEIRDRLLQDGVCNQDNLPSISSIN 366
Query: 136 RIIRT 140
RI+R+
Sbjct: 367 RILRS 381
>gb|U40931.1|DRU40931 Danio rerio transcription factor Pax9a (Pax9) mRNA, complete cds
Length = 1939
Score = 186 bits (472), Expect = 3e-45
Identities = 93/146 (63%), Positives = 109/146 (73%), Gaps = 12/146 (8%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 160 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 339
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD +PSVSSI+R
Sbjct: 340 ILPGAIGGSKPRVTTPNVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKFNLPSVSSISR 519
Query: 137 IIRTKV------------QQPFHPTP 150
I+R K+ +Q HP P
Sbjct: 520 ILRNKIGNLSQQNQYESSKQASHPQP 597
>dbj|AB007461.1|AB007461 Hydra magnipapillata mRNA for Pax-2/5/8, partial cds
Length = 1519
Score = 186 bits (471), Expect = 4e-45
Identities = 104/184 (56%), Positives = 121/184 (65%), Gaps = 18/184 (9%)
Frame = +2
Query: 32 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 91
L + VR++IVELAHQGVRPCDISRQLRVSHGCVSKIL R+YETGS++PGVIGGSKPKVAT
Sbjct: 2 LIEPVRRKIVELAHQGVRPCDISRQLRVSHGCVSKILSRFYETGSVRPGVIGGSKPKVAT 181
Query: 92 PKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRIIRTKVQQPFHPT-- 149
P VV KI EYK+ NPTMFAWEIR +LL E ICD+D+VPSVSSINRI+R ++ H +
Sbjct: 182 PSVVAKIQEYKQHNPTMFAWEIRDKLLSEQICDSDSVPSVSSINRIVRNRLGSSSHASMA 361
Query: 150 ----------PD----GAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILG--IP 193
PD G+ I GSYSI+GILG +P
Sbjct: 362 DLNSPLLKIDPDMTHYFVHPGLPIQIGAISTNFPGSIHAHLPRTTSGSYSISGILGMAVP 541
Query: 194 RSNG 197
S G
Sbjct: 542 SSQG 553
>emb|X92850.1|HSRNAPAX9 H.sapiens mRNA for Pax9 protein
Length = 993
Score = 183 bits (465), Expect = 2e-44
Identities = 88/123 (71%), Positives = 102/123 (82%)
Frame = +1
Query: 20 NQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKP 79
NQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGSI P
Sbjct: 1 NQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILP 180
Query: 80 GVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRIIR 139
G IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+RI+R
Sbjct: 181 GAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILR 360
Query: 140 TKV 142
K+
Sbjct: 361 NKI 369
>gb|AF266754.1|AF266754S1 Takifugu rubripes Pax9 (pax9) gene, exons 1 and 2
Length = 9695
Score = 182 bits (463), Expect = 4e-44
Identities = 89/126 (70%), Positives = 103/126 (81%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 8729 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 8908
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G CD +PSVSSI+R
Sbjct: 8909 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGGCDKFNLPSVSSISR 9088
Query: 137 IIRTKV 142
I+R K+
Sbjct: 9089 ILRNKI 9106
>dbj|D84254.1|D84254 Halocynthia roretzi mRNA for Pax-37, complete cds
Length = 2573
Score = 182 bits (462), Expect = 5e-44
Identities = 84/133 (63%), Positives = 107/133 (80%)
Frame = +1
Query: 9 PFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 68
P + G VNQLGGVF+NGRPLP+ +R +IVE+A G+RPC ISRQLRVSHGCVSKIL
Sbjct: 130 PAFPLEGQGRVNQLGGVFINGRPLPNHIRHKIVEMAAHGIRPCVISRQLRVSHGCVSKIL 309
Query: 69 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTV 128
RY ETGSIKPG IGGSKPKV ++ KI +YK+ +P+MF+WEIR QL++EG+CD +
Sbjct: 310 CRYQETGSIKPGAIGGSKPKVTNSEIESKIEQYKKDSPSMFSWEIRDQLIKEGLCDRSSA 489
Query: 129 PSVSSINRIIRTK 141
P+VS+I+RI+R+K
Sbjct: 490 PTVSAISRILRSK 528
Score = 37.7 bits (86), Expect = 2.0
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 227 RDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDVFQASE 280
R+ EG + DS+ + RK R+ TF+ QLE L+R FER YPD++ E
Sbjct: 616 READEGD-SDCDSEPELPLKRKQRRSRTTFSADQLEELERCFERTHYPDIYTREE 777
>gb|M86927.1|DROPOXNUP Fruitfly pox neuro protein (pox neuro) mRNA, complete cds
Length = 2178
Score = 181 bits (459), Expect = 1e-43
Identities = 96/135 (71%), Positives = 107/135 (79%), Gaps = 3/135 (2%)
Frame = +3
Query: 8 DPFSAMHRHG--GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 65
D SAM G GVNQLGGVFVNGRPLPD VR+RIV+LA GVRPCDISRQL VSHGCVS
Sbjct: 549 DHISAMPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVS 728
Query: 66 KILGRYYETGSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICD 124
KIL R+YETGSI+PG IGGSK K VATP VV KI K +N MFAWEIR QL ++ +CD
Sbjct: 729 KILTRFYETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCD 908
Query: 125 NDTVPSVSSINRIIR 139
+VPS+SSINRI+R
Sbjct: 909 PSSVPSISSINRILR 953
>emb|X58917.1|DMPOXNEUO D.melanogaster DNA fragment for paired domain gene Pox neuro
Length = 423
Score = 181 bits (459), Expect = 1e-43
Identities = 96/135 (71%), Positives = 107/135 (79%), Gaps = 3/135 (2%)
Frame = +1
Query: 8 DPFSAMHRHG--GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 65
D SAM G GVNQLGGVFVNGRPLPD VR+RIV+LA GVRPCDISRQL VSHGCVS
Sbjct: 4 DHISAMPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVS 183
Query: 66 KILGRYYETGSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICD 124
KIL R+YETGSI+PG IGGSK K VATP VV KI K +N MFAWEIR QL ++ +CD
Sbjct: 184 KILTRFYETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCD 363
Query: 125 NDTVPSVSSINRIIR 139
+VPS+SSINRI+R
Sbjct: 364 PSSVPSISSINRILR 408
>gb|AF039402.1|AF039402 Gallus gallus paired box protein (Pax-9) mRNA, complete cds
Length = 1756
Score = 181 bits (458), Expect = 1e-43
Identities = 88/126 (69%), Positives = 101/126 (79%)
Frame = +3
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVFVNGRPLP +R RIVELA G+R CDISRQLR SHGCVSKIL RY ETGS
Sbjct: 228 GEVNQLGGVFVNGRPLPKAIRLRIVELAQLGIRTCDISRQLRFSHGCVSKILARYNETGS 407
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I PG IGGSKP+V TP VV I YK+++P +FAWEIR +LL +G+CD VPSVSSI+R
Sbjct: 408 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 587
Query: 137 IIRTKV 142
I+R K+
Sbjct: 588 ILRNKI 605
>ref|NM_057338.1| Drosophila melanogaster Paired box neural (Pox-n), transcript
variant Pox-n-P1|CDS, mRNA
Length = 1278
Score = 179 bits (453), Expect = 5e-43
Identities = 91/123 (73%), Positives = 102/123 (81%), Gaps = 1/123 (0%)
Frame = +1
Query: 18 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI 77
GVNQLGGVFVNGRPLPD VR+RIV+LA GVRPCDISRQL VSHGCVSKIL R+YETGSI
Sbjct: 22 GVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETGSI 201
Query: 78 KPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
+PG IGGSK K VATP VV KI K +N MFAWEIR QL ++ +CD +VPS+SSINR
Sbjct: 202 RPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINR 381
Query: 137 IIR 139
I+R
Sbjct: 382 ILR 390
>gb|M14944.1|DROPRD91 D.melanogaster paired mRNA clone BSH9, paired box region
Length = 420
Score = 176 bits (447), Expect = 3e-42
Identities = 82/123 (66%), Positives = 102/123 (82%)
Frame = +1
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP+ +R++IVE+A GVRPC ISRQLRVSHGCVSKIL R+ ETGS
Sbjct: 37 GRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGS 216
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
I+PGVIGGSKP+VATP + +I E K+ P +F+WEIRA+L+ G+CD PSVSSI+R
Sbjct: 217 IRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISR 396
Query: 137 IIR 139
++R
Sbjct: 397 LLR 405
>gb|AF080573.1|AF080573 Homo sapiens B-cell specific transcription factor BSAP mRNA,
partial cds
Length = 411
Score = 176 bits (445), Expect = 5e-42
Identities = 93/143 (65%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Frame = +2
Query: 61 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLRE 120
HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV+K AEYKRQNPTMFAWEIR +LL E
Sbjct: 2 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKFAEYKRQNPTMFAWEIRDRLLAE 181
Query: 121 GICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDP 180
+CDNDTVPSVSSINRIIR K+QQP V A H+I D
Sbjct: 182 RVCDNDTVPSVSSINRIIRPKLQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDS 340
Query: 181 VG-SYSINGILGIPRSNGEKRKR 202
G SYSI+GILGI + + KR
Sbjct: 341 AGSSYSISGILGITSPSADTNKR 409
>gb|AF241311.1|AF241311 Acropora millepora transcription factor PaxD (PaxD) mRNA, complete
cds
Length = 2092
Score = 174 bits (440), Expect = 2e-41
Identities = 97/265 (36%), Positives = 146/265 (54%), Gaps = 1/265 (0%)
Frame = +2
Query: 17 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 76
G VNQLGGVF+NGRPLP ++R +I+ELA GVRPCDISRQLRVSHGCVSKIL RY ETG+
Sbjct: 92 GKVNQLGGVFINGRPLPKLLRWKIIELAQMGVRPCDISRQLRVSHGCVSKILCRYQETGT 271
Query: 77 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINR 136
+ PG++G ++P+ TP++ +KI +++++N +F+WE+R +LLRE IC TVPS+ +I++
Sbjct: 272 VDPGIVGLNRPRDVTPEIENKIDQFRKENSGIFSWEVRDRLLRENICSKSTVPSLGAISQ 451
Query: 137 IIRTKVQQPFHPTPDGAGTGVTAPGHTIXXXXXXXXXXXXXNDPVGSYSINGILGIPRSN 196
I+++K+ + A + D V + ++
Sbjct: 452 ILKSKI------VKENAWREEASLKKCDDTVNWRKKSSQDNEDEVDETRYDVVVK-EEEE 610
Query: 197 GEKRKREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADT-F 255
E+ + + TD +R S ++ RK R+ T F
Sbjct: 611 EEEEEEDPPSPVTDQNSVRNSYSPDAGLKTLSTFSPSYTYSSLENDFFIARKQRRSRTKF 790
Query: 256 TQQQLEALDRVFERPSYPDVFQASE 280
T QL AL++ F++ YPDV+ E
Sbjct: 791 THAQLNALEKAFQKTQYPDVYTREE 865
>dbj|AB007460.1|AB007460 Hydra magnipapillata mRNA for pox neuro, partial cds
Length = 2011
Score = 169 bits (427), Expect = 6e-40
Identities = 82/108 (75%), Positives = 91/108 (83%)
Frame = +2
Query: 32 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 91
LPD +R RI+ELA GVRP +ISRQL VSHGCVSKILGRYYETGS++PG IGGSKPKVAT
Sbjct: 2 LPDYMRHRIIELAQCGVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVAT 181
Query: 92 PKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTVPSVSSINRIIR 139
PKVV +I + K +NP MFAWEIR LL EGICDN VPSVSSINRI+R
Sbjct: 182 PKVVCRIVKLKEENPCMFAWEIRNSLLAEGICDNGNVPSVSSINRILR 325
>ref|NM_072719.1| DNA-binding transcription factor
Length = 774
Score = 169 bits (427), Expect = 6e-40
Identities = 82/133 (61%), Positives = 102/133 (76%)
Frame = +1
Query: 9 PFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 68
P ++ + VNQLGGVFVNGRPLP +R +IVEL+ QG RPCDISRQL++SHGCVSKIL
Sbjct: 163 PANSPAKTAEVNQLGGVFVNGRPLPFEMRCKIVELSRQGTRPCDISRQLKISHGCVSKIL 342
Query: 69 GRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDNDTV 128
R+ E G+I PG IGGS+P+V TPKVV+ I KR +P +FAWEIR +L+ ICD +
Sbjct: 343 TRFSENGTIMPGTIGGSRPRVTTPKVVEYIRSLKRSDPGIFAWEIRDRLISADICDRANL 522
Query: 129 PSVSSINRIIRTK 141
PSVSSI+RI+R K
Sbjct: 523 PSVSSISRILRNK 561
>dbj|AB010557.1|AB010557 Mus musculus mRNA for Pax4, complete cds
Length = 1295
Score = 168 bits (426), Expect = 7e-40
Identities = 83/133 (62%), Positives = 104/133 (77%), Gaps = 2/133 (1%)
Frame = +3
Query: 9 PFSAMHRHG--GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 66
P +M + G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSK
Sbjct: 195 PV*SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSK 374
Query: 67 ILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDND 126
ILGRYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ QL EG+C D
Sbjct: 375 ILGRYYRTGVLEPKCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQD 554
Query: 127 TVPSVSSINRIIR 139
PSVSSINR++R
Sbjct: 555 KAPSVSSINRVLR 593
>dbj|AB008912.1|AB008912 Mus musculus mRNA for Pax-4, complete cds
Length = 1324
Score = 168 bits (426), Expect = 7e-40
Identities = 83/133 (62%), Positives = 104/133 (77%), Gaps = 2/133 (1%)
Frame = +2
Query: 9 PFSAMHRHG--GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 66
P +M + G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSK
Sbjct: 227 PV*SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSK 406
Query: 67 ILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDND 126
ILGRYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ QL EG+C D
Sbjct: 407 ILGRYYRTGVLEPKCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQD 586
Query: 127 TVPSVSSINRIIR 139
PSVSSINR++R
Sbjct: 587 KAPSVSSINRVLR 625
>gb|AF031150.1|AF031150 Mus musculus paired-box transcription factor (Pax4) mRNA, complete
cds
Length = 1379
Score = 168 bits (426), Expect = 7e-40
Identities = 83/133 (62%), Positives = 104/133 (77%), Gaps = 2/133 (1%)
Frame = +3
Query: 9 PFSAMHRHG--GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 66
P +M + G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSK
Sbjct: 285 PV*SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSK 464
Query: 67 ILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDND 126
ILGRYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ QL EG+C D
Sbjct: 465 ILGRYYRTGVLEPKCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQD 644
Query: 127 TVPSVSSINRIIR 139
PSVSSINR++R
Sbjct: 645 KAPSVSSINRVLR 683
>dbj|AB010558.1|AB010558 Mus musculus mRNA for Pax4, complete cds
Length = 1310
Score = 168 bits (426), Expect = 7e-40
Identities = 83/133 (62%), Positives = 104/133 (77%), Gaps = 2/133 (1%)
Frame = +3
Query: 9 PFSAMHRHG--GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 66
P +M + G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSK
Sbjct: 210 PV*SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSK 389
Query: 67 ILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDND 126
ILGRYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ QL EG+C D
Sbjct: 390 ILGRYYRTGVLEPKCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQD 569
Query: 127 TVPSVSSINRIIR 139
PSVSSINR++R
Sbjct: 570 KAPSVSSINRVLR 608
>gb|AF145233.1|AF145233 Mus musculus transcription factor PAX4 (Pax4) mRNA, complete cds
Length = 1360
Score = 168 bits (426), Expect = 7e-40
Identities = 83/133 (62%), Positives = 104/133 (77%), Gaps = 2/133 (1%)
Frame = +1
Query: 9 PFSAMHRHG--GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 66
P +M + G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSK
Sbjct: 199 PV*SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSK 378
Query: 67 ILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDND 126
ILGRYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ QL EG+C D
Sbjct: 379 ILGRYYRTGVLEPKCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQD 558
Query: 127 TVPSVSSINRIIR 139
PSVSSINR++R
Sbjct: 559 KAPSVSSINRVLR 597
>gb|AF053101.1|AF053101 Rattus norvegicus Pax4b mRNA, complete cds
Length = 975
Score = 168 bits (425), Expect = 1e-39
Identities = 83/133 (62%), Positives = 104/133 (77%), Gaps = 2/133 (1%)
Frame = +1
Query: 9 PFSAMHRHG--GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSK 66
P +M + G VNQLGG+FVNGRPLP RQ+IV+LA +G+RPCDISR L+VS+GCVSK
Sbjct: 37 PV*SMQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSK 216
Query: 67 ILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRAQLLREGICDND 126
ILGRYY TG ++P IGGSKP++ATP VV +IA+ K + P +FAWEI+ QL EG+C D
Sbjct: 217 ILGRYYRTGVLEPKGIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQRQLCAEGLCTQD 396
Query: 127 TVPSVSSINRIIR 139
PSVSSINR++R
Sbjct: 397 KAPSVSSINRVLR 435
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 12, 2002 2:19 AM
Number of letters in database: 566,364,212
Number of sequences in database: 1,171,752
Lambda K H
0.314 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,287,131,443
Number of Sequences: 1171752
Number of extensions: 36445514
Number of successful extensions: 208797
Number of sequences better than 10.0: 996
Number of HSP's better than 10.0 without gapping: 75992
Number of HSP's successfully gapped in prelim test: 12068
Number of HSP's that attempted gapping in prelim test: 73537
Number of HSP's gapped (non-prelim): 167287
length of query: 415
length of database: 1,620,443,836
effective HSP length: 137
effective length of query: 278
effective length of database: 1,459,913,812
effective search space: 405856039736
effective search space used: 405856039736
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 80 (35.4 bits)