TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(247 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,171,752 sequences; 566,364,212 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
gb|U34881.1|MMU34881 Mus musculus CD8 mRNA, Lyt2a allele, c... 503 e-141
gb|M12825.1|MUSLYT2A Mouse T-cell differentiation antigen L... 496 e-139
gb|M12052.1|MUSLYT2B Mouse T-cell differentiation antigen (... 496 e-139
dbj|AK017889.1|AK017889 Mus musculus adult male thymus cDNA... 463 e-129
gb|M16981.1|MUSLYT2AP Mouse differentiation antigen Lyt-2-a... 434 e-125
gb|M22064.1|MUSMHLYT2 Mouse MHC class I Lyt-2-a gene encodi... 294 4e-78
gb|M12978.1|MUSLYT211 Mouse T-cell differentiation antigen ... 293 8e-78
gb|M12819.1|MUSLYT221 Mouse T-cell differentiation antigen ... 293 8e-78
ref|NM_031538.1| Rattus norvegicus CD8 antigen, alpha-chain... 291 4e-77
emb|X03015.1|RNANTOX8 Rat thymocyte mRNA for OX-8 antigen 291 4e-77
emb|Y00157.1|MMLYT22 Murine Lyt-2.2 gene for differentiatio... 287 6e-76
gb|AY065643.1| Sigmodon hispidus CD8-alpha mRNA, complete cds 219 2e-55
dbj|AB000485.1|AB000485 Felis catus mRNA for CD8 alpha anti... 206 1e-51
dbj|D16536.1|CATCD8AC Cat mRNA for CD8 alpha-chain, complet... 206 1e-51
gb|L14287.1|DOGCD8 Canis familiaris CD8 antigen mRNA, compl... 201 4e-50
emb|AJ130818.1|SSC130818 Saimiri sciureus mRNA for CD8 alph... 197 5e-49
ref|NM_001768.1| Homo sapiens CD8 antigen, alpha polypeptid... 194 4e-48
gb|M12828.1|HUMATCT8A Homo sapiens T-cell surface protein T... 194 4e-48
gb|M12824.1|HUMTCXAAA Human T-cell differentiation antigen ... 194 4e-48
gb|AY039664.1| Homo sapiens mutant CD8 alpha antigen (CD8A)... 192 2e-47
emb|X59416.1|BTCD8AC B.taurus CD8 alpha chain mRNA 190 1e-46
emb|X60223.1|PPCD8A P.pygmaeus Popy-CD8alpha mRNA for CD8 a... 165 3e-39
gb|M12979.1|MUSLYT212 Mouse T-cell differentiation antigen ... 137 1e-30
gb|AF378373.1|AF378373 Anas platyrhynchos T cell antigen CD... 108 5e-22
emb|Z22726.1|GGCD8CA G.gallus CD8 alpha gene 101 6e-20
gb|M26313.1|HUMCD8A1 Homo sapiens T cell surface glycoprote... 90 1e-16
gb|M27161.1|HUMMHCD8A Human MHC class I CD8 alpha-chain (Le... 89 3e-16
gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, com... 89 3e-16
gb|AF082499.1|AF082499 Marmota monax T-cell surface glycopr... 82 3e-14
gb|M12975.1|MUSLYT222 Mouse T-cell differentiation antigen ... 80 1e-13
emb|Y11473.1|GGCD8AH12 G.gallus mRNA for CD8 alpha chain, s... 62 3e-08
gb|M26314.1|HUMCD8A2 Homo sapiens T cell surface glycoprote... 60 1e-07
emb|Y11472.1|GGCD8AH7 G.gallus mRNA for CD8 alpha chain, su... 57 1e-06
gb|AF178053.1|AF178053 Oncorhynchus mykiss strain OSU-142 T... 53 2e-05
gb|AF178054.1|AF178054 Oncorhynchus mykiss strain ARO-F2 T-... 53 2e-05
emb|Z26484.1|GGCD8BMR G.gallus mRNA for CD8 beta-chain antigen 50 2e-04
gb|AF242416.1|AF242416 Ambystoma mexicanum CD8 beta mRNA, c... 49 5e-04
gb|AF178454.1|AF178454 Mus musculus anti-human apolipoprote... 41 0.075
gb|AF003304.1|AF003304 Mus musculus IgG kappa light chain v... 41 0.098
ref|NM_012428.1| Homo sapiens stromal cell derived factor r... 41 0.098
gb|AF109126.1|AF109126 Homo sapiens stromal cell-derived re... 41 0.098
ref|XM_015963.3| Homo sapiens stromal cell derived factor r... 41 0.098
emb|Y11474.1|HHCD8BH7 G.gallus mRNA for CD8 beta chain, sub... 40 0.17
gb|M12977.1|MUSLYT224 Mouse T-cell differentiation antigen ... 40 0.17
emb|Z70619.1|HS6D4XA5 H.sapiens mRNA for immunoglobulin hea... 39 0.28
gb|AE003426.1|AE003426 Drosophila melanogaster genomic scaf... 39 0.37
gb|AF023475.1|AF023475 Mus musculus anti-pneumolysin antibo... 39 0.48
emb|Z22118.1|MDIGKVBS M.domesticus IgK variable region 39 0.48
gb|U88676.1|MMU88676 Mus musculus anti-DNA antibody light c... 38 0.63
emb|AJ303449.1|MMU303449 Mus musculus partial mRNA for anti... 38 0.63
emb|X82890.1|MMIGG1VL M.musculus IgG1, light chain variable... 38 0.63
gb|S69053.1|S69053 Ig V kappa =anti-p-nitrophenyl phosphona... 38 0.63
emb|X65772.1|MMLA2IHEV M.musculus DNA for IgE antibody heav... 38 0.83
gb|AC004583.1|AC004583 Human Chromosome 15q11-q13 PAC clone... 38 0.83
emb|AJ242670.1|MMU242670 Mus musculus IgVk bv9 gene 38 0.83
emb|Y11475.1|HHCD8BH12 G.gallus mRNA for CD8 beta chain, su... 38 0.83
gb|AF015203.1|AF015203 Mus musculus mAb316 IgG1/k VHDJ regi... 38 0.83
emb|Z13007.1|OATCVG6 O.aries rearranged T-cell receptor gamma 38 0.83
emb|X02178.1|MMIGGVJ2 M.musculus mRNA for IgG kappa light c... 37 1.1
emb|X02177.1|MMIGGVJ1 M.musculus mRNA for IgG kappa light c... 37 1.1
emb|AJ231248.1|MMU231248 Mus musculus IgVk cw9 gene 37 1.1
gb|AF003294.1|AF003294 Mus musculus Ig kappa light chain va... 37 1.1
gb|U25098.1|MMU25098 Mus musculus anti-Pseudomonas aerugino... 37 1.1
gb|AF104333.1|AF104333 Mus musculus immunoglobulin light ch... 37 1.1
gb|U62776.1|MMU62776 Mus musculus immunoglobulin light chai... 37 1.1
gb|AF104998.1|AF104998 Mus musculus Fabu261 immunoglobulin ... 37 1.1
ref|NM_022188.1| Rattus norvegicus roundabout homolog 1 (Dr... 32 1.3
gb|AF041082.1|AF041082 Rattus norvegicus transmembrane rece... 32 1.3
ref|NG_000270.1| Drosophila melanogaster Notch (N) on chrom... 37 1.4
gb|AF118989.1|AF118989 Mus musculus AG0111 immunoglobulin h... 37 1.4
gb|M73844.1|MUSIGLHAB Mouse Ig rearranged heavy-chain gene ... 37 1.4
gb|M73843.1|MUSIGLHAA Mouse Ig rearranged heavy-chain gene ... 37 1.4
gb|AF118938.1|AF118938 Mus musculus AE0063 immunoglobulin h... 37 1.4
emb|X63801.1|MMVHMRB9 M.musculus mRNA for IgM V(H)MRB9 37 1.4
gb|L47456.1|HEF210 Heterodontus francisci tcr beta gene 37 1.4
emb|AL035436.3|DMC163A10 Drosophila melanogaster cosmid clo... 37 1.4
gb|M27106.1|MUSIGME7A Mus musculus monoclonal autoantibody ... 37 1.4
gb|M13281.1|MUSIGHDR Mouse Ig active mu-chain V-region (V13... 37 1.4
gb|U16687.1|MMU16687 Mus musculus Ig heavy chain leader and... 37 1.4
gb|AE003417.1|AE003417 Drosophila melanogaster genomic scaf... 37 1.8
emb|V00804.1|MMIGK3 Murine kappa-immunoglobulin gene fragme... 37 1.8
emb|X75611.1|ECVK1 Equus caballus Vk1 gene 37 1.8
ref|NG_000075.1| Drosophila melanogaster beta amyloid prote... 37 1.8
gb|AC104602.3| Drosophila melanogaster X BAC RP98-16G6 (Ros... 37 1.8
emb|Z37144.1|MMAMPIGVH M.musculus rearranged anti-MPO antib... 37 1.8
emb|AL022139.1|DMC65F1 Drosophila melanogaster cosmid clone... 37 1.8
gb|L08965.1|TORCPS Trichosporon cutaneum carbamoyl phosphat... 29 2.2
gb|M17728.1|MUSIGHGB Mouse Ig family 36-60 active alpha-cha... 36 2.4
gb|AF045510.1|AF045510 Mus musculus 6C9 monoclonal antibody... 36 2.4
gb|AF163747.1|AF163747 Mus musculus mAb 40.4.1 immunoglobul... 36 2.4
emb|X07880.1|MMIGAVH1 Mouse VH gene from IgA myeloma protei... 36 2.4
emb|AL445231.8|AL445231 Human DNA sequence from clone RP11-... 36 2.4
gb|M12391.1|MUSIGHGJ Mouse Ig rearranged H-chain gene V/D/J... 36 2.4
gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B1... 36 2.4
gb|AF139248.1|AF139248 Mus musculus clone JO1H6 anti-fluore... 36 2.4
emb|X63972.1|MMOPC315 M.musculus mRNA for MOPC 315 V(H) 36 2.4
dbj|AB016620.1|AB016620 Mus musculus mRNA for Immnogloblin ... 36 2.4
gb|M15230.1|MUSIGLAL Mouse HgM anti-Dns hybridoma VDJ2 regi... 36 2.4
gb|M27638.1|MUSIGHMOPC Mus musculus IgA chain gene, V-315 r... 36 2.4
dbj|AB037857.1|AB037857 Homo sapiens mRNA for KIAA1436 prot... 36 2.4
ref|XM_040709.2| Homo sapiens prostaglandin F2 receptor neg... 36 2.4
gb|M73878.1|MUSIGLHBJ Mouse Ig rearranged heavy-chain gene ... 36 2.4
gb|AF015213.1|AF015213 Mus musculus mAb544 IgG1/k VHDJ regi... 36 2.4
gb|M18502.1|MUSIGHZV Mouse IgM anti-p-azobenzenearsonate ge... 36 2.4
gb|M77363.1|RATIGLAI Rat (clone RLV100) Ig non-productively... 36 2.4
gb|J00565.1|MUSIGKAC1 Mouse Ig kappa active gene: Vk41 VJ r... 36 3.1
emb|V00780.1|MMIG29 Mouse rearranged kappa immunoglobulin g... 36 3.1
gb|J00577.1|MUSIGKAP Mouse ig kappa active gene: s107b v-j ... 36 3.1
gb|AF261879.1|AF261879 Mus musculus clone KP14 immunoglobul... 36 3.1
gb|AF045508.1|AF045508 Mus musculus dC10 anti-poly(dC) mono... 36 3.1
emb|AJ231233.1|MMU231233 Mus musculus IgVk kj4 gene 36 3.1
gb|S63544.1|S63544 mAb BA.N4:4.57 H chain V region [mice, ... 36 3.1
gb|M73888.1|MUSIGLHBT Mouse Ig rearranged heavy-chain gene ... 36 3.1
gb|M64168.1|MUSIGKAFT Mus musculus Ig active kappa-chain mR... 36 3.1
gb|M73875.1|MUSIGLHBG Mouse Ig rearranged heavy-chain gene ... 36 3.1
gb|U55588.1|MMU55588 Mus musculus anti-DNA immunoglobulin l... 36 3.1
gb|M36246.1|MUSIGLAFA Mouse Ig kappa-chain mRNA V region, p... 36 3.1
gb|AF163749.1|AF163749 Mus musculus mAb 49.8.9 immunoglobul... 36 3.1
gb|AF015215.1|AF015215 Mus musculus mAb546 IgG1/k VHDJ regi... 36 3.1
gb|M59920.1|MUSIGKAA3 Mouse IG germline chain mRNA V-J regi... 36 3.1
gb|M73899.1|MUSIGLHCE Mouse Ig rearranged heavy-chain gene ... 36 3.1
gb|M73891.1|MUSIGLHBW Mouse Ig rearranged heavy-chain gene ... 36 3.1
gb|M73855.1|MUSIGLHAM Mouse Ig rearranged heavy-chain gene ... 36 3.1
gb|L41880.1|MUSIKCC Mus musculus immunoglobulin kappa chain... 36 3.1
gb|M18501.1|MUSIGHZU Mouse IgM anti-p-azobenzenearsonate ge... 36 3.1
gb|K00884.1|MUSIGKVP Mouse ig kappa germline v gene: v-kapp... 36 3.1
gb|U29874.1|HSU29874 Human Flt3 ligand gene and Flt3 ligand... 36 3.1
gb|AF137626.1|AF137626 Mus musculus clone HVP8A2A6 anti-flu... 36 3.1
emb|X58642.1|MMHIGVB Mouse rearranged immunoglobulin mRNA f... 36 3.1
gb|AF023240.1|AF023240 Mus musculus clone CH1H12, family 36... 36 3.1
gb|AF091137.1|AF091137 Trichosurus vulpecula polymeric-immu... 35 4.1
gb|U29617.1|MMU29617 Mus musculus anti-DNA antibody Ig kapp... 35 4.1
gb|AF015201.1|AF015201 Mus musculus mAb234 IgG2b/K VHDJ reg... 35 4.1
gb|L48667.1|MUSX Mus musculus (cell line C3H/F2-15) chromos... 35 4.1
gb|AF015207.1|AF015207 Mus musculus mAb409 IgG1/k VHDJ regi... 35 4.1
gb|AF015195.1|AF015195 Mus musculus mAb124 IgG2b/K VHDJ reg... 35 4.1
gb|K01569.1|MUSIGHWL Mouse Ig germline H-chain V region VH-... 35 4.1
gb|K01570.1|MUSIGHAV Mouse Ig active H-chain V-region VH-36... 35 4.1
gb|M18499.1|MUSIGHZS Mouse IgG-3 anti-p-azobenzenearsonate ... 35 4.1
gb|AF003293.1|AF003293 Mus musculus Ig kappa light chain va... 35 4.1
dbj|AP000859.4|AP000859 Homo sapiens genomic DNA, chromosom... 35 4.1
ref|NM_112937.1| sugar transporter, putative 35 5.4
emb|X63811.1|MMVKMRB11 M.musculus mRNA for IgM V(k)MRB11 35 5.4
emb|V00808.1|MMIGK7 Part of the murine gene for kappa-immun... 35 5.4
gb|AF124721.1|AF124721 Mus musculus immnogloblin light chai... 35 5.4
gb|AF045495.1|AF045495 Mus musculus dC4 anti-poly(dC) monoc... 35 5.4
gb|AF279689.1|AF279689 Homo sapiens fibroblast growth facto... 35 5.4
gb|AC007172.6|AC007172 Homo sapiens chromosome 9, clone hRP... 35 5.4
gb|S55170.1|S55170 nitrophenyl phosphonate-specific antibod... 35 5.4
gb|BC013955.1|BC013955 Homo sapiens, clone IMAGE:3506216, mRNA 35 5.4
gb|AF015197.1|AF015197 Mus musculus mAb147 IgG2a/K VHDJ reg... 35 5.4
gb|AF003307.1|AF003307 Mus musculus IgG kappa light chain v... 35 5.4
gb|K02790.1|MUSIGHWJ Mouse (BALB/c) Ig germline H-chain V-r... 35 5.4
gb|AF296446.1|AF296446 Streptococcus mutans copper transpor... 35 5.4
gb|K02786.1|MUSIGHAF Mouse (A/J) Ig active H-chain V-region... 35 5.4
gb|AF312678.1|AF312678 Homo sapiens FGF homologous factor r... 35 5.4
emb|AJ006347.1|BTA6347 Bos taurus mRNA for T-cell receptor ... 35 5.4
gb|L25568.1|SKTIGCVE Raja erinacea immunoglobulin light cha... 35 5.4
gb|L23933.1|HUMIGHVDJL Homo sapiens (clone mAb 26) process-... 35 5.4
ref|NM_021923.2| Homo sapiens fibroblast growth factor rece... 35 5.4
emb|AL365338.17|AL365338 Human DNA sequence from clone RP11... 35 5.4
gb|AF026933.1|AF026933 Homo sapiens amyloid kappa light cha... 35 5.4
emb|AJ277437.1|HSA277437 Homo sapiens mRNA for fibroblast g... 35 5.4
gb|M26997.1|HUMIGV4A Human (antibody 26) IgH chain (IGHV@) ... 35 5.4
gb|M64623.1|MUSIGLDH Mus musculus immunoglobulin anti-CD3 l... 35 5.4
gb|S61341.1|S61341 Ig kappa =Ig kappa light chain [mice, h... 35 5.4
ref|XM_042695.1| Homo sapiens fibroblast growth factor rece... 35 5.4
gb|AC011472.7|AC011472 Homo sapiens chromosome 19 clone CTC... 28 6.2
gb|AY008757.1| Synthetic construct clone D12 anti-human C3a... 35 7.0
gb|L15576.1|XELIGLVAG Xenopus laevis immunoglobulin light c... 35 7.0
ref|XM_038848.2| Homo sapiens hect domain and RLD 2 (HERC2)... 35 7.0
gb|U55616.1|MMU55616 Mus musculus anti-DNA immunoglobulin l... 35 7.0
gb|AF087026.1|AF087026 Mus musculus hybrid 3-15D6 immunoglo... 35 7.0
emb|X58643.1|MMHIGVC Mouse rearranged immunoglobulin mRNA f... 35 7.0
dbj|AB011257.1|AB011257 Rice transitory yellowing virus gen... 35 7.0
gb|AY038361.1| Mus musculus anti-estradiol monoclonal antib... 35 7.0
gb|U20617.1|MMU20617 Mus musculus digoxin-binding single ch... 35 7.0
gb|K02791.1|MUSIGHWK Mouse (A/J) Ig germline H-chain V-regi... 35 7.0
ref|NM_019243.1| Rattus norvegicus prostaglandin F2 recepto... 35 7.0
gb|U26595.1|RNU26595 Rattus norvegicus prostaglandin F2a re... 35 7.0
gb|M36880.1|MUSIGHAGQ Mouse Ig rearranged H-chain mRNA V-D-... 35 7.0
gb|M36745.1|MUSIGHAGC Mouse Ig rearranged H-chain mRNA V-D-... 35 7.0
dbj|AB052747.1|AB052747 Bos taurus VCAM1 mRNA for vascular ... 35 7.0
dbj|AB052746.1|AB052746 Bos taurus VCAM1 mRNA for vascular ... 35 7.0
ref|NM_011197.1| Mus musculus prostaglandin F2 receptor neg... 35 7.0
gb|AF152344.1|AF152344 Mus musculus F2 alpha prostoglandin ... 35 7.0
ref|NM_004667.2| Homo sapiens hect domain and RLD 2 (HERC2)... 35 7.0
gb|AF071172.3|AF071172 Homo sapiens HERC2 (HERC2) mRNA, com... 35 7.0
gb|U19320.1|MMU19320 Mus musculus immunoglobulin kappa ligh... 35 7.0
gb|AF348615.1|AF348615 Mus musculus immunoglobulin light ch... 34 9.1
gb|M57576.1|MUSIGKT2E1 Mouse anti-idiotype antibody-resista... 34 9.1
emb|AJ231231.1|MMU231231 Mus musculus IgVk kh4 gene 34 9.1
gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12,... 34 9.1
gb|AF015791.1|AF015791 Bos taurus immunoglobulin light chai... 34 9.1
gb|S68848.1|S68848 Ig VH=anti-phosphorylcholine IgE heavy c... 34 9.1
gb|M13283.1|MUSIGHDS Mouse Ig active mu-chain V-region (V36... 34 9.1
gb|AF348616.1|AF348616 Mus musculus IgM ScFv antibody mRNA,... 34 9.1
gb|AC004511.1|AC004511 Homo sapiens chromosome 5, P1 clone ... 34 9.1
gb|AF003313.1|AF003313 Mus musculus IgG kappa light chain v... 34 9.1
gb|AF042090.1|AF042090 Homo sapiens chromosome 21q22.3 PAC ... 34 9.1
emb|X67211.1|MMTMVIIGK M.musculus rearranged immunoglobulin... 34 9.1
emb|X58641.1|MMHIGVA Mouse rearranged immunoglobulin mRNA f... 34 9.1
gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16,... 34 9.1
gb|AF230101.1|AF230101 Mus musculus immunoglobulin heavy ch... 34 9.1
gb|M36740.1|MUSIGHAFX Mouse Ig rearranged H-chain mRNA V-D-... 34 9.1
dbj|AB017434.1|AB017434 Mus musculus mRNA for anti-IL-18 Ig... 34 9.1
gb|M12311.1|MUSIGHIY Mouse Ig rearranged H-chain V-region m... 34 9.1
gb|M36741.1|MUSIGHAFY Mouse Ig rearranged H-chain mRNA V-D-... 34 9.1
emb|AL163282.2|HS21C082 Homo sapiens chromosome 21 segment ... 34 9.1
>gb|U34881.1|MMU34881 Mus musculus CD8 mRNA, Lyt2a allele, complete cds
Length = 744
Score = 503 bits (1294), Expect = e-141
Identities = 247/247 (100%), Positives = 247/247 (100%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS
Sbjct: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 180
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS
Sbjct: 181 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 360
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 180
KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP
Sbjct: 361 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 540
Query: 181 RGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKP 240
RGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKP
Sbjct: 541 RGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKP 720
Query: 241 RPSEKIV 247
RPSEKIV
Sbjct: 721 RPSEKIV 741
>gb|M12825.1|MUSLYT2A Mouse T-cell differentiation antigen Lyt-2 mRNA, complete cds
Length = 803
Score = 496 bits (1278), Expect = e-139
Identities = 244/247 (98%), Positives = 246/247 (98%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MASPLTRFLSLNLLL+GESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS
Sbjct: 13 MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 192
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA+RDTNNKYVLTLNKFS
Sbjct: 193 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFS 372
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 180
KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP
Sbjct: 373 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 552
Query: 181 RGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKP 240
RGSVKGTGLDFACDIYIWAPLAGICVA LLSLIITLICYHRSRKRVCKCPRPLVRQEGKP
Sbjct: 553 RGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLICYHRSRKRVCKCPRPLVRQEGKP 732
Query: 241 RPSEKIV 247
RPSEKIV
Sbjct: 733 RPSEKIV 753
>gb|M12052.1|MUSLYT2B Mouse T-cell differentiation antigen (Lyt-2) mRNA, complete cds
Length = 972
Score = 496 bits (1278), Expect = e-139
Identities = 244/247 (98%), Positives = 246/247 (98%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MASPLTRFLSLNLLL+GESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS
Sbjct: 127 MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 306
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA+RDTNNKYVLTLNKFS
Sbjct: 307 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFS 486
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 180
KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP
Sbjct: 487 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 666
Query: 181 RGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKP 240
RGSVKGTGLDFACDIYIWAPLAGICVA LLSLIITLICYHRSRKRVCKCPRPLVRQEGKP
Sbjct: 667 RGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLICYHRSRKRVCKCPRPLVRQEGKP 846
Query: 241 RPSEKIV 247
RPSEKIV
Sbjct: 847 RPSEKIV 867
>dbj|AK017889.1|AK017889 Mus musculus adult male thymus cDNA, RIKEN full-length enriched
library, clone:5830400P18:CD8 antigen, alpha chain, full
insert sequence
Length = 1395
Score = 463 bits (1191), Expect = e-129
Identities = 227/230 (98%), Positives = 228/230 (98%)
Frame = +2
Query: 18 ESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQP 77
ESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQP
Sbjct: 2 ESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQP 181
Query: 78 TFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVM 137
TFVVYMASSHNKITWDEKLNSSKLFSA+RDTNNKYVLTLNKFSKENEGYYFCSVISNSVM
Sbjct: 182 TFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVM 361
Query: 138 YFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYI 197
YFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYI
Sbjct: 362 YFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYI 541
Query: 198 WAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPSEKIV 247
WAPLAGICVA LLSLIITLICYHRSRKRVC CPRPLVRQEGKPRPSEKIV
Sbjct: 542 WAPLAGICVALLLSLIITLICYHRSRKRVC*CPRPLVRQEGKPRPSEKIV 691
>gb|M16981.1|MUSLYT2AP Mouse differentiation antigen Lyt-2-alpha-prime mRNA, complete cds
Length = 769
Score = 434 bits (1117), Expect(2) = e-125
Identities = 216/220 (98%), Positives = 218/220 (98%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MASPLTRFLSLNLLL+GESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS
Sbjct: 13 MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 192
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLFQNSSSKLPQPTFV YMASSHNKITWDEKLNSSKLFSA+RDTNNKYVLTLNKFS
Sbjct: 193 QGCSWLFQNSSSKLPQPTFV-YMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFS 369
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 180
KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP
Sbjct: 370 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 549
Query: 181 RGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH 220
RGSVKGTGLDFACDIYIWAPLAGICVA LLSLIITLICYH
Sbjct: 550 RGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLICYH 669
Score = 39.3 bits (90), Expect(2) = e-125
Identities = 17/18 (94%), Positives = 18/18 (99%)
Frame = +3
Query: 230 PRPLVRQEGKPRPSEKIV 247
P+PLVRQEGKPRPSEKIV
Sbjct: 666 PQPLVRQEGKPRPSEKIV 719
>gb|M22064.1|MUSMHLYT2 Mouse MHC class I Lyt-2-a gene encoding lyt-2.1 T-cell surface
alloantigen, complete cds
Length = 6316
Score = 294 bits (753), Expect = 4e-78
Identities = 147/148 (99%), Positives = 148/148 (99%)
Frame = +2
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MASPLTRFLSLNLLL+GESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS
Sbjct: 2006 MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 2185
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS
Sbjct: 2186 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 2365
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQK 148
KENEGYYFCSVISNSVMYFSSVVPVLQK
Sbjct: 2366 KENEGYYFCSVISNSVMYFSSVVPVLQK 2449
Score = 83.6 bits (205), Expect = 1e-14
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +1
Query: 183 SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH 220
SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH
Sbjct: 3208 SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH 3321
Score = 80.5 bits (197), Expect = 1e-13
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = +2
Query: 144 PVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGS 183
P+ VNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGS
Sbjct: 2939 PIAFAVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGS 3058
Score = 40.0 bits (92), Expect = 0.17
Identities = 22/39 (56%), Positives = 26/39 (66%)
Frame = +2
Query: 209 LLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPSEKIV 247
L ++I+ L+C S RPLVRQEGKPRPSEKIV
Sbjct: 5285 LATMIVDLLCIFVSF-------RPLVRQEGKPRPSEKIV 5380
>gb|M12978.1|MUSLYT211 Mouse T-cell differentiation antigen Lyt-2.1 gene, segment 1 of 2
Length = 815
Score = 293 bits (750), Expect = 8e-78
Identities = 146/148 (98%), Positives = 148/148 (99%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MASPLTRFLSLNLLL+GES+ILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS
Sbjct: 136 MASPLTRFLSLNLLLLGESMILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 315
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS
Sbjct: 316 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 495
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQK 148
KENEGYYFCSVISNSVMYFSSVVPVLQK
Sbjct: 496 KENEGYYFCSVISNSVMYFSSVVPVLQK 579
>gb|M12819.1|MUSLYT221 Mouse T-cell differentiation antigen Lyt 2.2 gene, segment 1 of 4
Length = 1139
Score = 293 bits (750), Expect = 8e-78
Identities = 146/148 (98%), Positives = 148/148 (99%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MASPLTRFLSLNLLL+GESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS
Sbjct: 460 MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 639
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA+RDTNNKYVLTLNKFS
Sbjct: 640 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFS 819
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQK 148
KENEGYYFCSVISNSVMYFSSVVPVLQK
Sbjct: 820 KENEGYYFCSVISNSVMYFSSVVPVLQK 903
>ref|NM_031538.1| Rattus norvegicus CD8 antigen, alpha-chain (Cd8a), mRNA
Length = 1010
Score = 291 bits (744), Expect = 4e-77
Identities = 156/250 (62%), Positives = 186/250 (74%), Gaps = 3/250 (1%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MAS + FLSLNLLL+ L + +L++ PKK+DAE+GQ+V L CEVL S
Sbjct: 46 MASRVICFLSLNLLLLDVITRL------QVSGQLQLSPKKVDAEIGQEVKLTCEVLRDTS 207
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLF+NSSS+L QPTF++Y++SS +K+ + LFSA R NNKY+LTL+KFS
Sbjct: 208 QGCSWLFRNSSSELLQPTFIIYVSSSRSKLN---DILDPNLFSA-RKENNKYILTLSKFS 375
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHP-TGTSQPQRPEDCR 179
+N+GYYFCS+ SNSVMYFS +VPV QKVNS TKPV R P+PV P TGT +P RPE CR
Sbjct: 376 TKNQGYYFCSITSNSVMYFSPLVPVFQKVNSIITKPVTRAPTPVPPPTGTPRPLRPEACR 555
Query: 180 P--RGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQE 237
P GSV+G GL FACDIYIWAPLAGIC LLSL+ITLIC HR+R+RVCKCPRPLV
Sbjct: 556 PGASGSVEGMGLGFACDIYIWAPLAGICAVLLLSLVITLICCHRNRRRVCKCPRPLV--- 726
Query: 238 GKPRPSEKIV 247
KPRPSEK V
Sbjct: 727 -KPRPSEKFV 753
>emb|X03015.1|RNANTOX8 Rat thymocyte mRNA for OX-8 antigen
Length = 1010
Score = 291 bits (744), Expect = 4e-77
Identities = 156/250 (62%), Positives = 186/250 (74%), Gaps = 3/250 (1%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MAS + FLSLNLLL+ L + +L++ PKK+DAE+GQ+V L CEVL S
Sbjct: 46 MASRVICFLSLNLLLLDVITRL------QVSGQLQLSPKKVDAEIGQEVKLTCEVLRDTS 207
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLF+NSSS+L QPTF++Y++SS +K+ + LFSA R NNKY+LTL+KFS
Sbjct: 208 QGCSWLFRNSSSELLQPTFIIYVSSSRSKLN---DILDPNLFSA-RKENNKYILTLSKFS 375
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHP-TGTSQPQRPEDCR 179
+N+GYYFCS+ SNSVMYFS +VPV QKVNS TKPV R P+PV P TGT +P RPE CR
Sbjct: 376 TKNQGYYFCSITSNSVMYFSPLVPVFQKVNSIITKPVTRAPTPVPPPTGTPRPLRPEACR 555
Query: 180 P--RGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQE 237
P GSV+G GL FACDIYIWAPLAGIC LLSL+ITLIC HR+R+RVCKCPRPLV
Sbjct: 556 PGASGSVEGMGLGFACDIYIWAPLAGICAVLLLSLVITLICCHRNRRRVCKCPRPLV--- 726
Query: 238 GKPRPSEKIV 247
KPRPSEK V
Sbjct: 727 -KPRPSEKFV 753
>emb|Y00157.1|MMLYT22 Murine Lyt-2.2 gene for differentiation antigen
Length = 5310
Score = 287 bits (734), Expect = 6e-76
Identities = 145/148 (97%), Positives = 147/148 (98%)
Frame = +3
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MASPLTRFLSLNLLL+GESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS
Sbjct: 456 MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 635
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLFQNSSSKLPQPTF VYMASSHNKITWDEKLNSSKLFSA+RDTNNKYVLTLNKFS
Sbjct: 636 QGCSWLFQNSSSKLPQPTF-VYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFS 812
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQK 148
KENEGYYFCSVISNSVMYFSSVVPVLQK
Sbjct: 813 KENEGYYFCSVISNSVMYFSSVVPVLQK 896
Score = 130 bits (327), Expect = 9e-29
Identities = 72/127 (56%), Positives = 73/127 (56%), Gaps = 50/127 (39%)
Frame = +1
Query: 144 PVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRG--------------------- 182
P+ VNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRG
Sbjct: 1378 PIAFAVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSG*CSQAIEISR*PGVENPDL 1557
Query: 183 -----------------------------SVKGTGLDFACDIYIWAPLAGICVAPLLSLI 213
SVKGTGLDFACDIYIWAPLAGICVA LLSLI
Sbjct: 1558 GGETWTGRRAGGRVGGCPEGF*IPFIRILSVKGTGLDFACDIYIWAPLAGICVALLLSLI 1737
Query: 214 ITLICYH 220
ITLICYH
Sbjct: 1738 ITLICYH 1758
Score = 40.0 bits (92), Expect = 0.17
Identities = 22/39 (56%), Positives = 26/39 (66%)
Frame = +2
Query: 209 LLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPSEKIV 247
L ++I+ L+C S RPLVRQEGKPRPSEKIV
Sbjct: 3683 LATMIVDLLCIFVSF-------RPLVRQEGKPRPSEKIV 3778
>gb|AY065643.1| Sigmodon hispidus CD8-alpha mRNA, complete cds
Length = 1229
Score = 219 bits (557), Expect = 2e-55
Identities = 130/249 (52%), Positives = 160/249 (64%), Gaps = 2/249 (0%)
Frame = +2
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVS 60
MA +TRFL L LLL I G +K + + PKK+ A LG++V L CEV S S
Sbjct: 38 MAPRVTRFLCLTLLL---EFIAELGGSK----DFEMSPKKVVAHLGKEVRLTCEVWVSTS 196
Query: 61 QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFS 120
QGCSWLF S + +PTF++Y++ S N+ + K+ S+KL D KY LTLN F+
Sbjct: 197 QGCSWLFLEHGSGV-KPTFLIYLSGSRNER--NNKIPSTKLSGKKED--KKYTLTLNNFA 361
Query: 121 KENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 180
KE+EGYYFCSV SNSV+YFS +V V TT PV + P+ V T S+ RPE CRP
Sbjct: 362 KEDEGYYFCSVTSNSVVYFSPLVSVFLPEKPTT--PVPKPPTSVPTTAISRSLRPEACRP 535
Query: 181 RG--SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEG 238
SV+ G DF CDI I APLAG+C LLSL+ TLIC HR+RKRVCKCPRP+VRQ G
Sbjct: 536 GAGTSVEKKGWDFDCDIIILAPLAGLCGVLLLSLVTTLICCHRNRKRVCKCPRPVVRQGG 715
Query: 239 KPRPSEKIV 247
KP PS K+V
Sbjct: 716 KPSPSGKLV 742
>dbj|AB000485.1|AB000485 Felis catus mRNA for CD8 alpha antigen, complete cds
Length = 795
Score = 206 bits (525), Expect = 1e-51
Identities = 120/252 (47%), Positives = 163/252 (64%), Gaps = 5/252 (1%)
Frame = +2
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVL-GSV 59
MASP+T L+ +++L + A +P R+ P +++ LGQ+V+L CEVL S
Sbjct: 11 MASPVTA------QLLPLALLLHAAAAAGPSP-FRLSPVRVEGRLGQRVELQCEVLLSSA 169
Query: 60 SQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKF 119
+ GC+WLFQ + +P F+ Y++ S K+ E+L+ ++ S R + Y LTL++F
Sbjct: 170 APGCTWLFQKNEPAA-RPIFLAYLSRSRTKLA--EELDPKQI-SGQRIQDTLYSLTLHRF 337
Query: 120 SKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQ--PQRPED 177
KE EGYYFCSV+SNSV+YFS+ VPV V TTT P R P+ P TSQ RP
Sbjct: 338 RKEEEGYYFCSVVSNSVLYFSAFVPVFLPVKPTTT-PAPRPPTQA-PITTSQRVSLRPGT 511
Query: 178 CRPRG--SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVR 235
C+P +V+ +GLD +CDIYIWAPLAG C LLSL+IT+IC HR+R+RVCKCPRP+VR
Sbjct: 512 CQPSAGSTVEASGLDLSCDIYIWAPLAGTCAFLLLSLVITVICNHRNRRRVCKCPRPVVR 691
Query: 236 QEGKPRPSEKIV 247
GKP PSE+ V
Sbjct: 692 AGGKPSPSERYV 727
>dbj|D16536.1|CATCD8AC Cat mRNA for CD8 alpha-chain, complete cds
Length = 785
Score = 206 bits (525), Expect = 1e-51
Identities = 120/252 (47%), Positives = 163/252 (64%), Gaps = 5/252 (1%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVL-GSV 59
MASP+T L+ +++L + A +P R+ P +++ LGQ+V+L CEVL S
Sbjct: 1 MASPVTA------QLLPLALLLHAAAAAGPSP-FRLSPVRVEGRLGQRVELQCEVLLSSA 159
Query: 60 SQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKF 119
+ GC+WLFQ + +P F+ Y++ S K+ E+L+ ++ S R + Y LTL++F
Sbjct: 160 APGCTWLFQKNEPAA-RPIFLAYLSRSRTKLA--EELDPKQI-SGQRIQDTLYSLTLHRF 327
Query: 120 SKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQ--PQRPED 177
KE EGYYFCSV+SNSV+YFS+ VPV V TTT P R P+ P TSQ RP
Sbjct: 328 RKEEEGYYFCSVVSNSVLYFSAFVPVFLPVKPTTT-PAPRPPTQA-PITTSQRVSLRPGT 501
Query: 178 CRPRG--SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVR 235
C+P +V+ +GLD +CDIYIWAPLAG C LLSL+IT+IC HR+R+RVCKCPRP+VR
Sbjct: 502 CQPSAGSTVEASGLDLSCDIYIWAPLAGTCAFLLLSLVITVICNHRNRRRVCKCPRPVVR 681
Query: 236 QEGKPRPSEKIV 247
GKP PSE+ V
Sbjct: 682 AGGKPSPSERYV 717
>gb|L14287.1|DOGCD8 Canis familiaris CD8 antigen mRNA, complete cds
Length = 769
Score = 201 bits (511), Expect = 4e-50
Identities = 115/239 (48%), Positives = 157/239 (65%), Gaps = 5/239 (2%)
Frame = +1
Query: 14 LLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLFQNSSS 72
LL+ +++L + A + R+ P K+ +L +V+L C+VL + + GCSWL+Q +
Sbjct: 22 LLLPLALLLRAAAASGPS-RFRMTPPKVVGQLHAQVELQCQVLLSTAAPGCSWLYQRNEP 198
Query: 73 KLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVI 132
+P F++Y++ S K E L++ K S + T++ Y LTL++F KE+EGYYFCSV+
Sbjct: 199 AA-RPVFLMYISQSRAKPA--EGLDT-KHISGQKKTDSTYSLTLSRFRKEDEGYYFCSVL 366
Query: 133 SNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRP--EDCRPRG--SVKGTG 188
SNS++YFS VPV V TT P R P+ PT S+P P E CRP +VK +G
Sbjct: 367 SNSILYFSPFVPVFLPVKPPTT-PAPRPPTRA-PTNASKPVSPRGETCRPAAGSAVKTSG 540
Query: 189 LDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPSEKIV 247
LDFAC+IYIWAPLAG C LLSL+IT+IC HR+R+RVCKCPRP+VR GKP PSEK V
Sbjct: 541 LDFACEIYIWAPLAGTCAVLLLSLVITIICNHRNRRRVCKCPRPVVRPGGKPSPSEKYV 717
>emb|AJ130818.1|SSC130818 Saimiri sciureus mRNA for CD8 alpha chain
Length = 708
Score = 197 bits (502), Expect = 5e-49
Identities = 118/252 (46%), Positives = 154/252 (60%), Gaps = 5/252 (1%)
Frame = +1
Query: 1 MASPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVL-GSV 59
MASP+T L LL+ A+P R+ P LG KV+L CEVL +
Sbjct: 1 MASPVTALLLPLALLLHA--------ARPS--RFRVSPLDRTWNLGDKVELKCEVLLSNP 150
Query: 60 SQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKF 119
S GCSWLFQ + PTF++Y++ + K+ + L++ + FS + + ++LTL F
Sbjct: 151 SSGCSWLFQKRGAAA-SPTFLLYISQTKPKVA--DGLDAQR-FSG-KKMGDSFILTLRDF 315
Query: 120 SKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQ--RPED 177
+E++G+YFCS +SNS+MYFS VPV TTT P R P+P PT SQP RP+
Sbjct: 316 REEDQGFYFCSALSNSIMYFSPFVPVFLPAKPTTT-PAPRPPTP-EPTTASQPLSLRPQA 489
Query: 178 CRPR--GSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVR 235
CRP G+V GLDFACDIYIW PLAG C LLSL+IT+ C HR+R+RVCKCPRP V+
Sbjct: 490 CRPPAGGAVDTRGLDFACDIYIWVPLAGTCGVLLLSLVITVYCNHRNRRRVCKCPRPAVK 669
Query: 236 QEGKPRPSEKIV 247
GKP PSE+ V
Sbjct: 670 SGGKPSPSERYV 705
>ref|NM_001768.1| Homo sapiens CD8 antigen, alpha polypeptide (p32) (CD8A), mRNA
Length = 1060
Score = 194 bits (494), Expect = 4e-48
Identities = 119/244 (48%), Positives = 154/244 (62%), Gaps = 5/244 (2%)
Frame = +3
Query: 9 LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLF 67
L + LL+ +++L + A+P + R+ P LG+ V+L C+VL + + GCSWLF
Sbjct: 72 LPVTALLLPLALLLHA--ARPS--QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 239
Query: 68 QNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYY 127
Q + PTF++Y+ S NK E L++ + FS R + +VLTL+ F +ENEGYY
Sbjct: 240 QPRGAAA-SPTFLLYL--SQNKPKAAEGLDTQR-FSGKR-LGDTFVLTLSDFRRENEGYY 404
Query: 128 FCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQ--RPEDCRPR--GS 183
FCS +SNS+MYFS VPV TTT P R P+P PT SQP RPE CRP G+
Sbjct: 405 FCSALSNSIMYFSHFVPVFLPAKPTTT-PAPRPPTPA-PTIASQPLSLRPEACRPAAGGA 578
Query: 184 VKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPS 243
V GLDFACDIYIWAPLAG C LLSL+ITL C HR+R+RVCKCPRP+V+ KP S
Sbjct: 579 VHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLS 758
Query: 244 EKIV 247
+ V
Sbjct: 759 ARYV 770
>gb|M12828.1|HUMATCT8A Homo sapiens T-cell surface protein T8 mRNA
Length = 1060
Score = 194 bits (494), Expect = 4e-48
Identities = 119/244 (48%), Positives = 154/244 (62%), Gaps = 5/244 (2%)
Frame = +3
Query: 9 LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLF 67
L + LL+ +++L + A+P + R+ P LG+ V+L C+VL + + GCSWLF
Sbjct: 72 LPVTALLLPLALLLHA--ARPS--QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 239
Query: 68 QNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYY 127
Q + PTF++Y+ S NK E L++ + FS R + +VLTL+ F +ENEGYY
Sbjct: 240 QPRGAAA-SPTFLLYL--SQNKPKAAEGLDTQR-FSGKR-LGDTFVLTLSDFRRENEGYY 404
Query: 128 FCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQ--RPEDCRPR--GS 183
FCS +SNS+MYFS VPV TTT P R P+P PT SQP RPE CRP G+
Sbjct: 405 FCSALSNSIMYFSHFVPVFLPAKPTTT-PAPRPPTPA-PTIASQPLSLRPEACRPAAGGA 578
Query: 184 VKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPS 243
V GLDFACDIYIWAPLAG C LLSL+ITL C HR+R+RVCKCPRP+V+ KP S
Sbjct: 579 VHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLS 758
Query: 244 EKIV 247
+ V
Sbjct: 759 ARYV 770
>gb|M12824.1|HUMTCXAAA Human T-cell differentiation antigen Leu-2/T8 mRNA, partial cds
Length = 1975
Score = 194 bits (494), Expect = 4e-48
Identities = 119/244 (48%), Positives = 154/244 (62%), Gaps = 5/244 (2%)
Frame = +1
Query: 9 LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLF 67
L + LL+ +++L + A+P + R+ P LG+ V+L C+VL + + GCSWLF
Sbjct: 94 LPVTALLLPLALLLHA--ARPS--QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 261
Query: 68 QNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYY 127
Q + PTF++Y+ S NK E L++ + FS R + +VLTL+ F +ENEGYY
Sbjct: 262 QPRGAAA-SPTFLLYL--SQNKPKAAEGLDTQR-FSGKR-LGDTFVLTLSDFRRENEGYY 426
Query: 128 FCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQ--RPEDCRPR--GS 183
FCS +SNS+MYFS VPV TTT P R P+P PT SQP RPE CRP G+
Sbjct: 427 FCSALSNSIMYFSHFVPVFLPAKPTTT-PAPRPPTPA-PTIASQPLSLRPEACRPAAGGA 600
Query: 184 VKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPS 243
V GLDFACDIYIWAPLAG C LLSL+ITL C HR+R+RVCKCPRP+V+ KP S
Sbjct: 601 VHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLS 780
Query: 244 EKIV 247
+ V
Sbjct: 781 ARYV 792
>gb|AY039664.1| Homo sapiens mutant CD8 alpha antigen (CD8A) mRNA, complete cds
Length = 1018
Score = 192 bits (488), Expect = 2e-47
Identities = 118/244 (48%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Frame = +3
Query: 9 LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLF 67
L + LL+ +++L + A+P + R+ P LG+ V+L C+VL + + GCSWLF
Sbjct: 186 LPVTALLLPLALLLHA--ARPS--QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 353
Query: 68 QNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYY 127
Q + PTF++Y+ S NK E L++ + FS R + +VLTL+ F +ENE YY
Sbjct: 354 QPRGAAA-SPTFLLYL--SQNKPKAAEGLDTQR-FSGKR-LGDTFVLTLSDFRRENESYY 518
Query: 128 FCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQ--RPEDCRPR--GS 183
FCS +SNS+MYFS VPV TTT P R P+P PT SQP RPE CRP G+
Sbjct: 519 FCSALSNSIMYFSHFVPVFLPAKPTTT-PAPRPPTPA-PTIASQPLSLRPEACRPAAGGA 692
Query: 184 VKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPS 243
V GLDFACDIYIWAPLAG C LLSL+ITL C HR+R+RVCKCPRP+V+ KP S
Sbjct: 693 VHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLS 872
Query: 244 EKIV 247
+ V
Sbjct: 873 ARYV 884
>emb|X59416.1|BTCD8AC B.taurus CD8 alpha chain mRNA
Length = 2001
Score = 190 bits (482), Expect = 1e-46
Identities = 117/255 (45%), Positives = 159/255 (61%), Gaps = 8/255 (3%)
Frame = +1
Query: 1 MASPLTRF-LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGS- 58
MAS LT L L LLL+ + +LGS R+ P + + LG+KV+L CE+L S
Sbjct: 16 MASLLTALILPLALLLLDAAKVLGS-------LSFRMSPTQKETRLGEKVELQCELLQSG 174
Query: 59 VSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNK 118
++ GCSWL ++ P+PTF++Y+++ K+ E L+ + S + + K+ LTL+
Sbjct: 175 MATGCSWL-RHIPGDDPRPTFLMYLSAQRVKLA--EGLDPRHI-SGAKVSGTKFQLTLSS 342
Query: 119 FSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQ----R 174
F +E++GYYFCSV+SNS++YFS+ VPV TT P +R PS PT Q + R
Sbjct: 343 FLQEDQGYYFCSVVSNSILYFSNFVPVFLPAKPATT-PAMR-PSSAAPTSAPQTRSVSPR 516
Query: 175 PEDCRPRG--SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRP 232
E CR +V + LDFAC+IYIWAPL G C LLSL+IT ICY R+R+RVCKCPRP
Sbjct: 517 SEVCRTSAGSAVDTSRLDFACNIYIWAPLVGTCGVLLLSLVITGICYRRNRRRVCKCPRP 696
Query: 233 LVRQEGKPRPSEKIV 247
+VRQ GKP SEK V
Sbjct: 697 VVRQGGKPNLSEKYV 741
>emb|X60223.1|PPCD8A P.pygmaeus Popy-CD8alpha mRNA for CD8 alpha chain
Length = 597
Score = 165 bits (417), Expect = 3e-39
Identities = 104/240 (43%), Positives = 137/240 (56%), Gaps = 1/240 (0%)
Frame = +1
Query: 9 LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLF 67
L + LL+ +++L + A+P + R+ P LG+ V+L C+VL + + GCSWLF
Sbjct: 7 LPVTALLLPLALLLHA--ARPS--QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 174
Query: 68 QNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYY 127
Q + PTF++Y+ S NK E L++ + FS R + +VLTL+ F +ENEGYY
Sbjct: 175 QPRGAAA-SPTFLLYL--SQNKPKAAEGLDTQR-FSGKR-LGDTFVLTLSDFRRENEGYY 339
Query: 128 FCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGT 187
FCS +SNS+MYFS VPV PVH G
Sbjct: 340 FCSALSNSIMYFSHFVPVFL---------------PVHTRG------------------- 417
Query: 188 GLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPSEKIV 247
LDFACDIYIWAPLAG C LLSL+ITL C HR+R+RVCKCPRP+V+ GKP SE+ V
Sbjct: 418 -LDFACDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGGKPSLSERYV 594
>gb|M12979.1|MUSLYT212 Mouse T-cell differentiation antigen Lyt 2.1 gene, segment 2 of 2
Length = 574
Score = 137 bits (344), Expect = 1e-30
Identities = 70/103 (67%), Positives = 72/103 (68%), Gaps = 26/103 (25%)
Frame = +1
Query: 144 PVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGS-------------------- 183
P+ VNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGS
Sbjct: 82 PIAFAVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSG*VLSSD*DKQIAWGGKILI 261
Query: 184 ------VKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH 220
+KGTGLDFACDIYIW PLAGICVA LLSLIITLICYH
Sbjct: 262 LEGDLDLKGTGLDFACDIYIWVPLAGICVALLLSLIITLICYH 390
>gb|AF378373.1|AF378373 Anas platyrhynchos T cell antigen CD8 alpha mRNA, complete cds
Length = 1458
Score = 108 bits (269), Expect = 5e-22
Identities = 73/211 (34%), Positives = 111/211 (52%), Gaps = 3/211 (1%)
Frame = +3
Query: 39 KKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNS 98
K + G+ ++L CE SV G SW+ Q S L F+VY+ S+ +K T+ E
Sbjct: 177 KTTHPQSGKPLELECE--SSVDSGVSWIRQEKSGTLH---FIVYI-STLSKPTFKENQVM 338
Query: 99 SKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVL 158
F + + Y LT+ F E+EG YFC+V N +YFSS +P V TTT +
Sbjct: 339 PSHFGTFK-SGKSYRLTVKSFKAEDEGTYFCTVNYNQQLYFSSGLPAFFPV--TTTAAPI 509
Query: 159 RTPSPVHPTGTSQPQRPEDC---RPRGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIIT 215
+T P T SQ + + C + K L+F C+I+IW PLA C+ L++L+IT
Sbjct: 510 KTVPPT--TQGSQVTKRDVCLQSHEAETSKEKELNFFCEIFIWVPLAAACLLLLIALVIT 683
Query: 216 LICYHRSRKRVCKCPRPLVRQEGKPRPSEKI 246
++ ++R+R C+C RP GKP+ + K+
Sbjct: 684 IVLCQKTRRRRCRCKRP---ANGKPKMNPKV 767
>emb|Z22726.1|GGCD8CA G.gallus CD8 alpha gene
Length = 1381
Score = 101 bits (251), Expect = 6e-20
Identities = 69/233 (29%), Positives = 113/233 (47%), Gaps = 5/233 (2%)
Frame = +2
Query: 13 LLLMGESIILGSGEAKPQAPELRIFPKKMD-AELGQKVDLVCEVLGSVSQGCSWLFQNSS 71
LLL+ + + + E R + M + GQ+++L C S G SW+ Q+
Sbjct: 26 LLLLSLGLCCTGAQGQRNTMEARFLNRNMKHPQEGQRLELECRPFNS-DNGVSWIRQDKD 202
Query: 72 SKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSV 131
KL F+VY+ S ++ T+ + +S F + + + L + F +++G YFC
Sbjct: 203 GKLH---FIVYI-SPLSRTTFPQNERTSSQFEGSKQ-GSSFRLVVKNFKAQDQGTYFCIA 367
Query: 132 ISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGTG--- 188
N ++YFSS P +T P+ T S + C P S GT
Sbjct: 368 NINQMLYFSSGQPAFFPATTTAA------PTTAAATTQSSHVNKDICMP-SSEPGTSSEN 526
Query: 189 -LDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEGKP 240
L+ C+I+IWAPLAG+C+ L++LI+T++ ++R+R C+C RP GKP
Sbjct: 527 ILNLYCEIFIWAPLAGVCLVLLVALIVTIVLCQKTRRRRCRCKRP---PNGKP 676
>gb|M26313.1|HUMCD8A1 Homo sapiens T cell surface glycoprotein (CD8A) gene, exons 1 and 2
Length = 922
Score = 90.1 bits (222), Expect = 1e-16
Identities = 58/141 (41%), Positives = 79/141 (55%), Gaps = 1/141 (0%)
Frame = +1
Query: 33 ELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKIT 91
+ R+ P LG+ V+L C+VL + + GCSWLFQ + PTF++Y+ S NK
Sbjct: 373 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAA-SPTFLLYL--SQNKPK 543
Query: 92 WDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNS 151
E L++ + FS R + +VLTL+ F +ENEGYYFCS +SNS+MYFS VPV +
Sbjct: 544 AAEGLDTQR-FSGKR-LGDTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPVFLPGPT 717
Query: 152 TTTKPVLRTPSPVHPTGTSQP 172
LR VH S P
Sbjct: 718 RRVAAPLRVGLGVHLNLFSTP 780
>gb|M27161.1|HUMMHCD8A Human MHC class I CD8 alpha-chain (Leu-2/T8) gene, complete cds
Length = 7319
Score = 89.0 bits (219), Expect = 3e-16
Identities = 52/114 (45%), Positives = 72/114 (62%), Gaps = 1/114 (0%)
Frame = +3
Query: 33 ELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKIT 91
+ R+ P LG+ V+L C+VL + + GCSWLFQ + PTF++Y+ S NK
Sbjct: 780 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAA-SPTFLLYL--SQNKPK 950
Query: 92 WDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPV 145
E L++ + FS R + +VLTL+ F +ENEGYYFCS +SNS+MYFS VPV
Sbjct: 951 AAEGLDTQR-FSGKR-LGDTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPV 1106
Score = 62.0 bits (149), Expect = 4e-08
Identities = 33/54 (61%), Positives = 34/54 (62%), Gaps = 9/54 (16%)
Frame = +3
Query: 183 SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH---------RSRKRVC 227
SV GLDFACDIYIWAPLAG C LLSL+ITL C H RSR R C
Sbjct: 2013 SVHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCNHSKSRGIAAGRSRPRSC 2174
>gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, complete sequence
Length = 135809
Score = 89.0 bits (219), Expect = 3e-16
Identities = 52/114 (45%), Positives = 72/114 (62%), Gaps = 1/114 (0%)
Frame = +2
Query: 33 ELRIFPKKMDAELGQKVDLVCEVL-GSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKIT 91
+ R+ P LG+ V+L C+VL + + GCSWLFQ + PTF++Y+ S NK
Sbjct: 17678 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAA-SPTFLLYL--SQNKPK 17848
Query: 92 WDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPV 145
E L++ + FS R + +VLTL+ F +ENEGYYFCS +SNS+MYFS VPV
Sbjct: 17849 AAEGLDTQR-FSGKR-LGDTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPV 18004
Score = 62.0 bits (149), Expect = 4e-08
Identities = 33/54 (61%), Positives = 34/54 (62%), Gaps = 9/54 (16%)
Frame = +2
Query: 183 SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH---------RSRKRVC 227
SV GLDFACDIYIWAPLAG C LLSL+ITL C H RSR R C
Sbjct: 18905 SVHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCNHSKSRGIAAGRSRPRSC 19066
>gb|AF082499.1|AF082499 Marmota monax T-cell surface glycoprotein CD8 alpha chain (CD8
alpha) mRNA, partial cds
Length = 131
Score = 82.4 bits (202), Expect = 3e-14
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +3
Query: 190 DFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRVCKCPRP 232
DFACDIYIWAPLAG C LLSL+IT+IC+HR R+RVCKCPRP
Sbjct: 3 DFACDIYIWAPLAGTCAVLLLSLVITVICHHRKRRRVCKCPRP 131
>gb|M12975.1|MUSLYT222 Mouse T-cell differentiation antigen Lyt 2.2 gene segment 2 of 4
Length = 648
Score = 80.5 bits (197), Expect = 1e-13
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = +1
Query: 144 PVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGS 183
P+ VNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGS
Sbjct: 82 PIAFAVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGS 201
Score = 79.7 bits (195), Expect = 2e-13
Identities = 37/38 (97%), Positives = 37/38 (97%)
Frame = +3
Query: 183 SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH 220
SVKGTGLDFACDIYIWAPLAGICVA LLSLIITLICYH
Sbjct: 351 SVKGTGLDFACDIYIWAPLAGICVALLLSLIITLICYH 464
>emb|Y11473.1|GGCD8AH12 G.gallus mRNA for CD8 alpha chain, substrain H12
Length = 501
Score = 62.4 bits (150), Expect = 3e-08
Identities = 46/159 (28%), Positives = 73/159 (44%), Gaps = 4/159 (2%)
Frame = +1
Query: 46 GQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAV 105
GQ+++L C ++ G SW+ Q+ KL F+VY+ S ++ T+ +S F
Sbjct: 64 GQRLELECMPF-NIDNGVSWIRQDKDGKLH---FIVYI-SPFSRTTFPRNERTSSQFEGS 228
Query: 106 RDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVH 165
+ + + L + F +++G YFC N V+YFSS P +T P+
Sbjct: 229 KQ-GSSFRLVVKNFRAQDQGTYFCIANINQVLYFSSGQPAFFPATTTA------APTTAA 387
Query: 166 PTGTSQPQRPEDCRPRGSVKGTG----LDFACDIYIWAP 200
T S + C P S GT L+ C+I+IWAP
Sbjct: 388 ATTQSSHVNKDICMP-SSEPGTSSENILNLYCEIFIWAP 501
>gb|M26314.1|HUMCD8A2 Homo sapiens T cell surface glycoprotein (CD8A) gene, exons 3 and 4
Length = 763
Score = 60.5 bits (145), Expect = 1e-07
Identities = 28/44 (63%), Positives = 31/44 (69%)
Frame = +1
Query: 183 SVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRKRV 226
SV GLDFACDIYIWAPLAG C LLSL+ITL C H + +
Sbjct: 538 SVHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCNHSKSRGI 669
>emb|Y11472.1|GGCD8AH7 G.gallus mRNA for CD8 alpha chain, substrain H7
Length = 501
Score = 57.4 bits (137), Expect = 1e-06
Identities = 44/159 (27%), Positives = 71/159 (43%), Gaps = 4/159 (2%)
Frame = +1
Query: 46 GQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAV 105
GQ ++L C ++ G SW+ Q+ KL F+VY+ S ++ + +S F
Sbjct: 64 GQPLELECMPF-NIDNGVSWIRQDKDGKLH---FIVYI-SPLSRTAFPRNERTSSQFEGS 228
Query: 106 RDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVH 165
+ + + L + F +++G YFC N ++YFSS P +T P+
Sbjct: 229 KQ-GSSFRLVVKNFRAQDQGTYFCIANINQMLYFSSGQPAFFPATTTA------APTTAA 387
Query: 166 PTGTSQPQRPEDCRPRGSVKGTG----LDFACDIYIWAP 200
T S + C P S GT L+ C+I+IWAP
Sbjct: 388 ATTQSSHVNKDICMP-SSEPGTSSENILNLYCEIFIWAP 501
>gb|AF178053.1|AF178053 Oncorhynchus mykiss strain OSU-142 T-cell surface glycoprotein CD8
alpha precursor (Onmy-CD8a) mRNA, complete cds
Length = 1085
Score = 53.1 bits (126), Expect = 2e-05
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 5/205 (2%)
Frame = +1
Query: 46 GQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAV 105
G++V++ C + F ++ + ++AS K + ++++FS
Sbjct: 124 GERVEITCAPVSKTKSNMVIWF-----RVQDNAGMEFIASFSTKDGMKKTDFNNEVFS-- 282
Query: 106 RDTNNKYVLTLNKFSKENE-GYYFCSVISNSVMYFSSVV----PVLQKVNSTTTKPVLRT 160
+ NK +L L F K + G Y C+ I+ + + F V P +TTT P+ T
Sbjct: 283 EEQINKNILILKAFKKARDSGVYSCASINGNALVFGEVTRLAGPAPMTTTTTTTTPMTTT 462
Query: 161 PSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH 220
T + C+ G V T +C++ +WAPL C L LIIT +C H
Sbjct: 463 IELTSSTTA------KSCKV-GKVDPTA---SCELIVWAPLTAGCGFLFLLLIIT-VC-H 606
Query: 221 RSRKRVCKCPRPLVRQEGKPRPSEK 245
+R R +CP RQ P ++
Sbjct: 607 CNRIRTKRCPHHYKRQPRMAAPGQQ 681
>gb|AF178054.1|AF178054 Oncorhynchus mykiss strain ARO-F2 T-cell surface glycoprotein CD8
alpha precursor (Onmy-CD8a) mRNA, Onmy-CD8a.2 allele,
complete cds
Length = 1088
Score = 52.8 bits (125), Expect = 2e-05
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 5/205 (2%)
Frame = +1
Query: 46 GQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAV 105
G++V++ C + F ++ + ++AS K + + ++FS
Sbjct: 124 GERVEITCAPVSKTKSNMVIWF-----RVQDNAGMEFIASFSTKDGMKKTNFNHEVFS-- 282
Query: 106 RDTNNKYVLTLNKFSKENE-GYYFCSVISNSVMYFSSVV----PVLQKVNSTTTKPVLRT 160
+ NK +L L F K + G Y C+ I+ + + F V P +TTT P+ T
Sbjct: 283 EEQINKNILILKAFKKARDSGVYSCASINGNALVFGEVTRLAGPAPMTTTTTTTTPMTTT 462
Query: 161 PSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYH 220
T + C+ G V T +C++ +WAPL C L LIIT +C H
Sbjct: 463 IELTSSTTA------KSCKV-GKVDPTA---SCELIVWAPLTAGCGFLFLLLIIT-VC-H 606
Query: 221 RSRKRVCKCPRPLVRQEGKPRPSEK 245
+R R +CP RQ P ++
Sbjct: 607 CNRIRTKRCPHHYKRQPRMAAPGQQ 681
>emb|Z26484.1|GGCD8BMR G.gallus mRNA for CD8 beta-chain antigen
Length = 1327
Score = 50.1 bits (118), Expect = 2e-04
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 5/182 (2%)
Frame = +2
Query: 50 DLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTN 109
++VC + G + G W N Q + +S K T+ ++ K +
Sbjct: 515 EIVCPMKGEHT-GVYWYRWNQGR---QHFEFLLFSSPLGKATYGTNISQEKFSIRGTSSY 682
Query: 110 NKYVLTLNKFSKENEGYYFCSVISNSVMYFSS-----VVPVLQKVNSTTTKPVLRTPSPV 164
+ Y L +N+ + G Y+C I +S + + VV VL + +T P+
Sbjct: 683 HSYRLHINRLHGSDNGTYYCCTIQSSQLILGTGTQLDVVDVLPLPSMSTLVPL------- 841
Query: 165 HPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVAPLLSLIITLICYHRSRK 224
T +P R C+P+ K AC +W PLA + LLSLI T+ ++R R+
Sbjct: 842 ----TKKPMR---CKPKN--KAINKKGACTPMVWVPLAAGALLLLLSLIPTIRRFYRLRR 994
Query: 225 RV 226
R+
Sbjct: 995 RL 1000
>gb|AF242416.1|AF242416 Ambystoma mexicanum CD8 beta mRNA, complete cds
Length = 1118
Score = 48.5 bits (114), Expect = 5e-04
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Frame = +1
Query: 79 FVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKY-VLTLNKFSKENEGYYFCSVISNSVM 137
F++Y+ S +K T+ + S + F+A RD+ + VL LN + G Y+C+V+ +++
Sbjct: 358 FILYL-SILDKSTYGSSI-SKESFTASRDSFRRMGVLKLNALQPADSGNYYCAVVVHTLD 531
Query: 138 YFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYI 197
L V+S T +L T +PV + E + KG AC I
Sbjct: 532 IVFGTGTELVVVDSFPTTAILTTSTPV----CGCKEHEETSKGSTKKKGARAGVACSSVI 699
Query: 198 WAPLAGICVAPLLSLIIT---LICYHRSRKR 225
+APLA V ++SL++ L +HR +R
Sbjct: 700 YAPLATGLVMLVISLVVMINHLQHFHRRYRR 792
>gb|AF178454.1|AF178454 Mus musculus anti-human apolipoprotein A monoclonal antibody
mAb(a)20L kappa light chain mRNA, partial cds
Length = 642
Score = 41.2 bits (95), Expect = 0.075
Identities = 32/132 (24%), Positives = 57/132 (42%), Gaps = 2/132 (1%)
Frame = +1
Query: 33 ELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITW 92
E+ P + A LG++V L C + +WL Q + + ++Y S
Sbjct: 7 EMTQSPSSLSASLGERVSLTCRASQDIGVSLNWLQQEPDGTIKR---LIYGTS------- 156
Query: 93 DEKLNSS--KLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVN 150
+L+S K FS R + + Y LT++ E+ Y+C ++S F P ++ +
Sbjct: 157 --RLDSGVPKRFSGSR-SGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGSAPSCKRAD 327
Query: 151 STTTKPVLRTPS 162
+ T V+ PS
Sbjct: 328 AAPTVSVIFPPS 363
>gb|AF003304.1|AF003304 Mus musculus IgG kappa light chain variable region mRNA, partial
cds
Length = 321
Score = 40.8 bits (94), Expect = 0.098
Identities = 28/92 (30%), Positives = 43/92 (46%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C+ SVS +W FQ +S K P+ ++Y AS+
Sbjct: 22 PSSLSASLGERVSLTCQASQSVSNYLNW-FQQTSGKAPR--LLIYGASNLED-------G 171
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
S FS + LT++ +E+ YFC
Sbjct: 172 VSSRFSGT-GYGTDFTLTISSLEEEDVATYFC 264
>ref|NM_012428.1| Homo sapiens stromal cell derived factor receptor 1 (SDFR1),
transcript variant beta, mRNA
Length = 2388
Score = 40.8 bits (94), Expect = 0.098
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 15/179 (8%)
Frame = +1
Query: 3 SPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAEL---GQKVDLVCEVLGSV 59
S L L+L+LLL+ S++ G G A+ F K +E G +L C+V+GS
Sbjct: 148 SSLPSALALSLLLVSGSLLPGPGAAQNAG-----FVKSPMSETKLTGDAFELYCDVVGSP 312
Query: 60 SQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKF 119
+ W + V A S ++ WD + +N VL + +
Sbjct: 313 TPEIQWWYAE-----------VNRAESFRQL-WDGARKRRVTVNTAYGSNGVSVLRITRL 456
Query: 120 SKENEGYYFCSVISN----------SVMYF--SSVVPVLQKVNSTTTKPVLRTPSPVHP 166
+ E+ G Y C ++ S+ + + + VLQK T++ V+ SPV P
Sbjct: 457 TLEDSGTYECRASNDPKRNDLRQNPSITWIRAQATISVLQKPRIVTSEEVIIRDSPVLP 633
>gb|AF109126.1|AF109126 Homo sapiens stromal cell-derived receptor-1 beta mRNA, complete
cds
Length = 2388
Score = 40.8 bits (94), Expect = 0.098
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 15/179 (8%)
Frame = +1
Query: 3 SPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAEL---GQKVDLVCEVLGSV 59
S L L+L+LLL+ S++ G G A+ F K +E G +L C+V+GS
Sbjct: 148 SSLPSALALSLLLVSGSLLPGPGAAQNAG-----FVKSPMSETKLTGDAFELYCDVVGSP 312
Query: 60 SQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKF 119
+ W + V A S ++ WD + +N VL + +
Sbjct: 313 TPEIQWWYAE-----------VNRAESFRQL-WDGARKRRVTVNTAYGSNGVSVLRITRL 456
Query: 120 SKENEGYYFCSVISN----------SVMYF--SSVVPVLQKVNSTTTKPVLRTPSPVHP 166
+ E+ G Y C ++ S+ + + + VLQK T++ V+ SPV P
Sbjct: 457 TLEDSGTYECRASNDPKRNDLRQNPSITWIRAQATISVLQKPRIVTSEEVIIRDSPVLP 633
>ref|XM_015963.3| Homo sapiens stromal cell derived factor receptor 1 (SDFR1), mRNA
Length = 2377
Score = 40.8 bits (94), Expect = 0.098
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 15/179 (8%)
Frame = +1
Query: 3 SPLTRFLSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAEL---GQKVDLVCEVLGSV 59
S L L+L+LLL+ S++ G G A+ F K +E G +L C+V+GS
Sbjct: 148 SSLPSALALSLLLVSGSLLPGPGAAQNAG-----FVKSPMSETKLTGDAFELYCDVVGSP 312
Query: 60 SQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTNNKYVLTLNKF 119
+ W + V A S ++ WD + +N VL + +
Sbjct: 313 TPEIQWWYAE-----------VNRAESFRQL-WDGARKRRVTVNTAYGSNGVSVLRITRL 456
Query: 120 SKENEGYYFCSVISN----------SVMYF--SSVVPVLQKVNSTTTKPVLRTPSPVHP 166
+ E+ G Y C ++ S+ + + + VLQK T++ V+ SPV P
Sbjct: 457 TLEDSGTYECRASNDPKRNDLRQNPSITWIRAQATISVLQKPRIVTSEEVIIRDSPVLP 633
>emb|Y11474.1|HHCD8BH7 G.gallus mRNA for CD8 beta chain, substrain H7
Length = 538
Score = 40.0 bits (92), Expect = 0.17
Identities = 35/153 (22%), Positives = 58/153 (37%)
Frame = +1
Query: 50 DLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTN 109
++VC + G + G W N Q + +S K T+ ++ K +
Sbjct: 115 EIVCPMKGEHT-GVYWYRWNQGR---QHFEFLLFSSPLGKATYGTNISQEKFSIRGTSSY 282
Query: 110 NKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGT 169
+ Y L +N+ + G Y+C I +S + + T V P P PT
Sbjct: 283 HSYRLHINRLHGSDNGTYYCCTIQSSQLILGT---------GTQLDVVDVLPLPSIPTLV 435
Query: 170 SQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLA 202
++P C+P+ K AC +W PLA
Sbjct: 436 PLTKKPMRCKPKN--KAINKKGACTPMVWVPLA 528
>gb|M12977.1|MUSLYT224 Mouse T-cell differentiation antigen Lyt 2.2 gene, segment 4 of 4
Length = 1009
Score = 40.0 bits (92), Expect = 0.17
Identities = 22/39 (56%), Positives = 26/39 (66%)
Frame = +1
Query: 209 LLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPSEKIV 247
L ++I+ L+C S RPLVRQEGKPRPSEKIV
Sbjct: 22 LATMIVDLLCIFVSF-------RPLVRQEGKPRPSEKIV 117
>emb|Z70619.1|HS6D4XA5 H.sapiens mRNA for immunoglobulin heavy chain variable region
(6D4-A5, VH4, 4-31/DP-65)
Length = 333
Score = 39.3 bits (90), Expect = 0.28
Identities = 29/97 (29%), Positives = 47/97 (47%), Gaps = 4/97 (4%)
Frame = +1
Query: 47 QKVDLVCEVLG-SVSQG---CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF 102
Q + L C V G S+S G SW+ Q L ++ Y S I ++ LNS ++F
Sbjct: 46 QTLSLTCSVSGDSISSGDYYWSWIRQPPGKGLEWIGYMSYSGS----IYYNPSLNS-RVF 210
Query: 103 SAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 139
+V + N++ L LN + + YFC+ + + YF
Sbjct: 211 ISVDTSENQFSLKLNSVTAADTAVYFCARVRGTFWYF 321
>gb|AE003426.1|AE003426 Drosophila melanogaster genomic scaffold 142000013386054 section 10 of
35, complete sequence
Length = 300193
Score = 38.9 bits (89), Expect = 0.37
Identities = 21/64 (32%), Positives = 33/64 (50%)
Frame = +2
Query: 28 KPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSH 87
KP P R P ++A+LG V + C+V G+ W+ +NS + TFV+ S +
Sbjct: 189575 KPVGPVFRQRPVSVEADLGATVSMRCDVAGNPEPEIEWISENSDQ--VRQTFVLLTHSIY 189748
Query: 88 NKIT 91
N I+
Sbjct: 189749 NSIS 189760
>gb|AF023475.1|AF023475 Mus musculus anti-pneumolysin antibody PLY-6 variable light chain
mRNA, partial cds
Length = 321
Score = 38.5 bits (88), Expect = 0.48
Identities = 27/97 (27%), Positives = 42/97 (42%)
Frame = +1
Query: 33 ELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITW 92
EL P + A LG++V L C +S SWL Q + + ++Y AS+
Sbjct: 7 ELTQSPSSLSASLGERVSLTCRASQEISDFLSWLQQKPDGTIKR---LIYAASTLES--- 168
Query: 93 DEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
K FS R + + + LT++ E+ YFC
Sbjct: 169 ----GVPKRFSGSR-SGSDFSLTISSLESEDFADYFC 264
>emb|Z22118.1|MDIGKVBS M.domesticus IgK variable region
Length = 321
Score = 38.5 bits (88), Expect = 0.48
Identities = 27/102 (26%), Positives = 44/102 (42%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y S+ N
Sbjct: 22 PSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKR---LIYSTSTLNS-------G 171
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 139
K FS R + + Y LT++ E+ Y+C ++S F
Sbjct: 172 VPKRFSGSR-SGSDYSLTISSLESEDFADYYCLQYASSPYTF 294
>gb|U88676.1|MMU88676 Mus musculus anti-DNA antibody light chain variable region mRNA,
partial cds
Length = 306
Score = 38.1 bits (87), Expect = 0.63
Identities = 26/102 (25%), Positives = 44/102 (42%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C + +WL Q + + ++Y SS +
Sbjct: 7 PSSLSASLGERVSLTCRASQDIGSSLNWLQQEPDGTIKR---LIYATSSLDS-------G 156
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 139
K FS R + + Y LT++ F E+ Y+C ++S F
Sbjct: 157 VPKRFSGSR-SGSDYSLTISSFESEDFVDYYCLQYASSPWTF 279
>emb|AJ303449.1|MMU303449 Mus musculus partial mRNA for anti-flavocytochrome b2 IgG, heavy
chain
Length = 675
Score = 38.1 bits (87), Expect = 0.63
Identities = 33/123 (26%), Positives = 57/123 (45%), Gaps = 3/123 (2%)
Frame = +1
Query: 47 QKVDLVCEVLG-SVSQGC-SWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA 104
Q + L C V G S++ G +W+ + +KL ++ Y S++ + + ++ S
Sbjct: 46 QTLSLTCSVTGDSITSGYWNWIRKFPGNKLEYMGYISYGGSTYYNPSLESRI------SI 207
Query: 105 VRDTN-NKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSP 163
RDT+ N+Y L LN + E+ YFC+ + S YF + + T TP
Sbjct: 208 TRDTSKNQYYLQLNSVTTEDTATYFCARLFGS-YYFD----YWGQGTTLTVSSAKTTPPS 372
Query: 164 VHP 166
V+P
Sbjct: 373 VYP 381
>emb|X82890.1|MMIGG1VL M.musculus IgG1, light chain variable region
Length = 330
Score = 38.1 bits (87), Expect = 0.63
Identities = 24/92 (26%), Positives = 41/92 (44%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C + +WL Q + + ++Y SS +K
Sbjct: 22 PSSLSASLGERVSLTCRASQDIGSSLNWLQQEPDGTIKR---LIYATSSLDK-------G 171
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
+ K FS R + + Y LT++ E+ Y+C
Sbjct: 172 APKRFSGSR-SGSDYSLTISSLESEDFVDYYC 264
>gb|S69053.1|S69053 Ig V kappa =anti-p-nitrophenyl phosphonate esterolytic antibody
kappa chain variable region {clone CNJ206} [mice, mRNA
Partial, 295 nt]
Length = 295
Score = 38.1 bits (87), Expect = 0.63
Identities = 27/102 (26%), Positives = 45/102 (43%)
Frame = +2
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y AS+ +
Sbjct: 2 PSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKR---LIYAASTLDS-------G 151
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 139
K FS R + + Y LT++ E+ Y+C ++S F
Sbjct: 152 VPKRFSGSR-SGSDYSLTISSLESEDFADYYCLQYASSPYTF 274
>emb|X65772.1|MMLA2IHEV M.musculus DNA for IgE antibody heavy chain (VDJ)
Length = 439
Score = 37.7 bits (86), Expect = 0.83
Identities = 36/125 (28%), Positives = 57/125 (44%), Gaps = 3/125 (2%)
Frame = +2
Query: 9 LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLG-SVSQGC-SWL 66
LSL LL IL + + P L + Q + L C V G S++ G +W+
Sbjct: 47 LSLLYLLTALPGILSEVQLQESGPSL--------VKPSQTLSLTCSVTGDSITSGYWNWI 202
Query: 67 FQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTN-NKYVLTLNKFSKENEG 125
Q +KL F+ Y +++ ++ L S S RDT+ N+Y L LN + E+
Sbjct: 203 RQVPGNKLEYMGFINYSGNTY----YNPSLRSR--ISITRDTSKNQYFLHLNSVTTEDTA 364
Query: 126 YYFCS 130
Y+C+
Sbjct: 365 TYYCA 379
>gb|AC004583.1|AC004583 Human Chromosome 15q11-q13 PAC clone pDJ778a2, complete sequence [Homo
sapiens]
Length = 132493
Score = 37.7 bits (86), Expect = 0.83
Identities = 28/96 (29%), Positives = 41/96 (42%)
Frame = -1
Query: 143 VPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLA 202
VP+ K +S T + +P P P +Q +R E R R S G+ D WA
Sbjct: 70795 VPI*VKRHSLPTP*PMPSPVP-SPGPPAQGRRAESARARSSAVGSSTDQPLCSTAWAADC 70619
Query: 203 GICVAPLLSLIITLICYHRSRKRVCKCPRPLVRQEG 238
+ P L +T +C+ R+ + PRP R G
Sbjct: 70618 TVLSTPALLARVTTVCFRLFRRML---PRPKPRNSG 70520
>emb|AJ242670.1|MMU242670 Mus musculus IgVk bv9 gene
Length = 640
Score = 37.7 bits (86), Expect = 0.83
Identities = 29/115 (25%), Positives = 48/115 (41%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C + +WL Q + + ++Y SS +
Sbjct: 313 PSSLSASLGERVSLTCRASQDIGSSLNWLQQEPDGTIKR---LIYATSSLDS-------G 462
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNST 152
K FS R + + Y LT++ E+ Y+C + Y SS V+Q + T
Sbjct: 463 VPKRFSGSR-SGSDYSLTISSLESEDFADYYC------LQYASSPPTVIQIIT*T 606
>emb|Y11475.1|HHCD8BH12 G.gallus mRNA for CD8 beta chain, substrain H12
Length = 538
Score = 37.7 bits (86), Expect = 0.83
Identities = 37/158 (23%), Positives = 62/158 (38%), Gaps = 5/158 (3%)
Frame = +1
Query: 50 DLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTN 109
++VC + G + G W N Q + +S K T+ ++ K +
Sbjct: 115 EIVCPMKGEHT-GVYWYRWNQGR---QHFEFLLFSSPLGKATYGTNISQEKFSIRGTSSY 282
Query: 110 NKYVLTLNKFSKENEGYYFCSVISNSVMYFSS-----VVPVLQKVNSTTTKPVLRTPSPV 164
+ Y L +N+ + G Y+C I +S + + VV VL + +T P+
Sbjct: 283 HSYRLHINRLHGSDNGTYYCCTIQSSQLILGTGTQLDVVDVLPLPSMSTLVPL------- 441
Query: 165 HPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLA 202
T +P R C+P+ K AC +W PLA
Sbjct: 442 ----TKKPMR---CKPKN--KAINKKGACTPMVWVPLA 528
>gb|AF015203.1|AF015203 Mus musculus mAb316 IgG1/k VHDJ region mRNA, partial cds
Length = 324
Score = 37.7 bits (86), Expect = 0.83
Identities = 26/87 (29%), Positives = 46/87 (51%), Gaps = 3/87 (3%)
Frame = +1
Query: 47 QKVDLVCEVLG-SVSQGC-SWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA 104
Q + L C V G S++ G +W+ + +KL +++Y S++ ++ L S S
Sbjct: 10 QTLSLTCSVTGDSITSGYWNWIRKFPGNKLEYMGYIIYSGSTY----YNPSLKSR--ISI 171
Query: 105 VRDTN-NKYVLTLNKFSKENEGYYFCS 130
RDT+ N+Y L LN + E+ Y+C+
Sbjct: 172 TRDTSKNQYYLQLNSVTTEDTATYYCA 252
>emb|Z13007.1|OATCVG6 O.aries rearranged T-cell receptor gamma
Length = 708
Score = 37.7 bits (86), Expect = 0.83
Identities = 27/107 (25%), Positives = 45/107 (41%), Gaps = 1/107 (0%)
Frame = +1
Query: 33 ELRIFPKK-MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKIT 91
E+R+ + M G V + C V SV W Q P ++ +A S +
Sbjct: 166 EIRLSQRSVMVGSAGGAVTMPCHVSRSVDY-VHWFRQLEGQA---PERLLNLALSKRDVQ 333
Query: 92 WDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMY 138
WD L K+ +A ++L K +K +EG Y+C+ ++ Y
Sbjct: 334 WDSVLGGDKVSAARGGDGKSCTMSLRKLAKSDEGLYYCAAWDYNLNY 474
>emb|X02178.1|MMIGGVJ2 M.musculus mRNA for IgG kappa light chain (partial) Gloop 2
Length = 381
Score = 37.4 bits (85), Expect = 1.1
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y AS+ +
Sbjct: 64 PSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKR---LIYAASTLDS-------G 213
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
K FS R + + Y LT++ E+ Y+C
Sbjct: 214 VPKRFSG-RRSGSDYSLTISSLESEDFADYYC 306
>emb|X02177.1|MMIGGVJ1 M.musculus mRNA for IgG kappa light chain (partial) Gloop 1
Length = 380
Score = 37.4 bits (85), Expect = 1.1
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +3
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y AS+ +
Sbjct: 63 PSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKR---LIYAASTLDS-------G 212
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
K FS R + + Y LT++ E+ Y+C
Sbjct: 213 VPKRFSGSR-SGSDYSLTISSLESEDFADYYC 305
>emb|AJ231248.1|MMU231248 Mus musculus IgVk cw9 gene
Length = 805
Score = 37.4 bits (85), Expect = 1.1
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +2
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y AS+ +
Sbjct: 413 PSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKR---LIYAASTLDS-------G 562
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
K FS R + + Y LT++ E+ Y+C
Sbjct: 563 VPKRFSGSR-SGSDYSLTISSLESEDFADYYC 655
>gb|AF003294.1|AF003294 Mus musculus Ig kappa light chain variable region gene, partial cds
Length = 563
Score = 37.4 bits (85), Expect = 1.1
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +3
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y AS+ +
Sbjct: 300 PSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKR---LIYAASTLDS-------G 449
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
K FS R + + Y LT++ E+ Y+C
Sbjct: 450 VPKRFSGSR-SGSDYSLTISSLESEDFADYYC 542
>gb|U25098.1|MMU25098 Mus musculus anti-Pseudomonas aeruginosa serotype IATS O6
lipopolysaccharide O-antigen, Ig light chain variable
region mRNA, partial cds
Length = 336
Score = 37.4 bits (85), Expect = 1.1
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y AS+ +
Sbjct: 22 PSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKR---LIYAASTLDS-------G 171
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
K FS R + + Y LT++ E+ Y+C
Sbjct: 172 VPKRFSGSR-SGSDYSLTISSLESEDFADYYC 264
>gb|AF104333.1|AF104333 Mus musculus immunoglobulin light chain Fab g37 mRNA, partial cds
Length = 324
Score = 37.4 bits (85), Expect = 1.1
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y AS+ +
Sbjct: 22 PSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKR---LIYAASTLDS-------G 171
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
K FS R + + Y LT++ E+ Y+C
Sbjct: 172 VPKRFSGSR-SGSDYSLTISSLESEDFADYYC 264
>gb|U62776.1|MMU62776 Mus musculus immunoglobulin light chain variable region mRNA,
partial cds
Length = 324
Score = 37.4 bits (85), Expect = 1.1
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y AS+ +
Sbjct: 22 PSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKR---LIYAASTLDS-------G 171
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
K FS R + + Y LT++ E+ Y+C
Sbjct: 172 VPKRFSGSR-SGSDYSLTISSLESEDFADYYC 264
>gb|AF104998.1|AF104998 Mus musculus Fabu261 immunoglobulin light chain variable region
mRNA, partial cds
Length = 317
Score = 37.4 bits (85), Expect = 1.1
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C +S SWL Q + + ++Y AS+ +
Sbjct: 22 PSSLSASLGERVSLTCRASQRISGYLSWLQQKPDGTIKR---LIYAASTLDS-------G 171
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC 129
K FS R + + Y LT++ E+ Y+C
Sbjct: 172 VPKRFSGSR-SGSDYSLTISSLESEDFATYYC 264
>ref|NM_022188.1| Rattus norvegicus roundabout homolog 1 (Drosophila) (Robo1), mRNA
Length = 4956
Score = 32.0 bits (71), Expect(2) = 1.3
Identities = 37/155 (23%), Positives = 59/155 (37%), Gaps = 20/155 (12%)
Frame = +1
Query: 30 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNK 89
+ P + P+ LG+ V CE G+ PQP S N
Sbjct: 1045 EPPHFVVKPRDQVVALGRTVTFQCEATGN----------------PQPAIFWRREGSQNL 1176
Query: 90 ITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC-------SVISNSVMYFSSV 142
+ + SS FS V T + LT+ + + GYY C S+I+ + + + V
Sbjct: 1177 LFSYQPPQSSSRFS-VSQTGD---LTVTNVQRSDVGYYICQTLNVAGSIITKAYLEVTDV 1344
Query: 143 V-----PVLQK--------VNSTTTKPVLRTPSPV 164
+ PV+++ V+ T T + T SPV
Sbjct: 1345 IADRPPPVIRQGPVNQTVAVDGTLTLSCVATGSPV 1449
Score = 23.9 bits (50), Expect(2) = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 160 TPSPVHPTGTSQPQRPEDCRPRGSV--KGTGLDF 191
T S V P GT RP RPRG++ K L+F
Sbjct: 1541 TLSWVTPVGTPALLRPPVVRPRGALTSKSRNLEF 1642
>gb|AF041082.1|AF041082 Rattus norvegicus transmembrane receptor Robo1 mRNA, complete cds
Length = 4956
Score = 32.0 bits (71), Expect(2) = 1.3
Identities = 37/155 (23%), Positives = 59/155 (37%), Gaps = 20/155 (12%)
Frame = +1
Query: 30 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNK 89
+ P + P+ LG+ V CE G+ PQP S N
Sbjct: 1045 EPPHFVVKPRDQVVALGRTVTFQCEATGN----------------PQPAIFWRREGSQNL 1176
Query: 90 ITWDEKLNSSKLFSAVRDTNNKYVLTLNKFSKENEGYYFC-------SVISNSVMYFSSV 142
+ + SS FS V T + LT+ + + GYY C S+I+ + + + V
Sbjct: 1177 LFSYQPPQSSSRFS-VSQTGD---LTVTNVQRSDVGYYICQTLNVAGSIITKAYLEVTDV 1344
Query: 143 V-----PVLQK--------VNSTTTKPVLRTPSPV 164
+ PV+++ V+ T T + T SPV
Sbjct: 1345 IADRPPPVIRQGPVNQTVAVDGTLTLSCVATGSPV 1449
Score = 23.9 bits (50), Expect(2) = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 160 TPSPVHPTGTSQPQRPEDCRPRGSV--KGTGLDF 191
T S V P GT RP RPRG++ K L+F
Sbjct: 1541 TLSWVTPVGTPALLRPPVVRPRGALTSKSRNLEF 1642
>ref|NG_000270.1| Drosophila melanogaster Notch (N) on chromosome 1
Length = 76989
Score = 37.0 bits (84), Expect = 1.4
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 28 KPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSH 87
KP P R P ++A+LG V + C+V G+ W+ +NS + TFV+ S +
Sbjct: 4976 KPVGPVFRQRPVSVEADLGATVSMRCDVAGNPEPEIEWISENSDQ--VRQTFVLLTHSIY 5149
Query: 88 NKIT 91
+ I+
Sbjct: 5150 HSIS 5161
>gb|AF118989.1|AF118989 Mus musculus AG0111 immunoglobulin heavy chain VH3660B-JH4 region
mRNA, partial cds
Length = 307
Score = 37.0 bits (84), Expect = 1.4
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +2
Query: 49 VDLVCEVLG-SVSQGC-SWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVR 106
+ L C V G S++ G W+ + +KL ++ Y S++ ++ L S S R
Sbjct: 29 LSLTCSVTGDSITSGYWXWIRKFPGNKLEYMGYISYSGSTY----YNPSLKSR--ISITR 190
Query: 107 DTN-NKYVLTLNKFSKENEGYYFCSVISNSVMY 138
DT+ N+Y L LN + E+ Y+C+ NS Y
Sbjct: 191 DTSKNQYYLQLNSVTTEDTATYYCARGGNSYYY 289
>gb|M73844.1|MUSIGLHAB Mouse Ig rearranged heavy-chain gene V-D-J region, isolate 1ZSP3
Length = 327
Score = 37.0 bits (84), Expect = 1.4
Identities = 28/96 (29%), Positives = 48/96 (49%), Gaps = 3/96 (3%)
Frame = +1
Query: 47 QKVDLVCEVLG-SVSQGC-SWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA 104
Q + L C V G S++ G +W+ + +KL ++ Y S++ ++ L S S
Sbjct: 46 QTLSLTCSVTGDSITSGYWNWIRKFPGNKLEYMGYISYSGSTY----YNPSLKSR--ISI 207
Query: 105 VRDTN-NKYVLTLNKFSKENEGYYFCSVISNSVMYF 139
RDT+ N+Y L LN + E+ Y+C+ + YF
Sbjct: 208 TRDTSKNQYYLQLNSVTTEDTATYYCARSGITPRYF 315
>gb|M73843.1|MUSIGLHAA Mouse Ig rearranged heavy-chain gene V-D-J region, isolate 1ZSP1
Length = 327
Score = 37.0 bits (84), Expect = 1.4
Identities = 28/96 (29%), Positives = 48/96 (49%), Gaps = 3/96 (3%)
Frame = +1
Query: 47 QKVDLVCEVLG-SVSQGC-SWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA 104
Q + L C V G S++ G +W+ + +KL ++ Y S++ ++ L S S
Sbjct: 46 QTLSLTCSVTGDSITSGYWNWIRKFPGNKLEYMGYISYSGSTY----YNPSLKSR--ISI 207
Query: 105 VRDTN-NKYVLTLNKFSKENEGYYFCSVISNSVMYF 139
RDT+ N+Y L LN + E+ Y+C+ + YF
Sbjct: 208 TRDTSKNQYYLQLNSVTTEDTATYYCARSGITPRYF 315
>gb|AF118938.1|AF118938 Mus musculus AE0063 immunoglobulin heavy chain VH3660B-JH4 region
mRNA, partial cds
Length = 310
Score = 37.0 bits (84), Expect = 1.4
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +2
Query: 45 LGQKVDLVCEVLGS--VSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF 102
L Q + L C V G S +W+ + KL ++ Y ++ ++
Sbjct: 17 LSQTLSLTCSVTGXSITSXYWNWIRKFPGXKLEYMGYISYSGRTYYNPXXKSRI------ 178
Query: 103 SAVRDTN-NKYVLTLNKFSKENEGYYFCSVISNSVMYFS 140
S RDT+ N+Y L LN + E Y+C+ N + Y++
Sbjct: 179 SXTRDTSKNQYYLQLNSVTTEXTATYYCARYGNYLYYYA 295
>emb|X63801.1|MMVHMRB9 M.musculus mRNA for IgM V(H)MRB9
Length = 354
Score = 37.0 bits (84), Expect = 1.4
Identities = 26/97 (26%), Positives = 47/97 (47%), Gaps = 4/97 (4%)
Frame = +1
Query: 47 QKVDLVCEVLG-SVSQGC--SWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFS 103
Q + L C V G S++ G +W+ Q +KL ++ Y S++ + ++ S
Sbjct: 46 QSLSLTCSVTGYSITSGYYWNWIRQFPGNKLEWMGYISYDGSNNYNPSLKNRI------S 207
Query: 104 AVRDTN-NKYVLTLNKFSKENEGYYFCSVISNSVMYF 139
RDT+ N++ L LN + E+ Y+C+ + YF
Sbjct: 208 ITRDTSKNQFFLKLNSVTTEDTATYYCASLHTMPWYF 318
>gb|L47456.1|HEF210 Heterodontus francisci tcr beta gene
Length = 576
Score = 37.0 bits (84), Expect = 1.4
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Frame = +1
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + +G++V+L C + GS + W ++ K PQ V++ ++ N +++++
Sbjct: 127 PASVSRVVGEEVELKCTLEGSSTLNMFW-YRQYPRKEPQ---VMFYSTGTNHKNPEKEVD 294
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPV 157
F+A R T ++ L + + + YFC+ S YF ++ + T +P
Sbjct: 295 G---FTAERPTGTQFNLESSSLRENHSAVYFCAWGRYSEAYFGDGTKLVVLGENDTIRPA 465
Query: 158 LRT---PSP 163
T PSP
Sbjct: 466 KVTVFEPSP 492
>emb|AL035436.3|DMC163A10 Drosophila melanogaster cosmid clone 163A10
Length = 36056
Score = 37.0 bits (84), Expect = 1.4
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 28 KPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSH 87
KP P R P ++A+LG V + C+V G+ W+ +NS + TFV+ S +
Sbjct: 4976 KPVGPVFRQRPVSVEADLGATVSMRCDVAGNPEPEIEWISENSDQ--VRQTFVLLTHSIY 5149
Query: 88 NKIT 91
+ I+
Sbjct: 5150 HSIS 5161
>gb|M27106.1|MUSIGME7A Mus musculus monoclonal autoantibody IgM chain mRNA, VDJ region,
from hybridoma E7
Length = 428
Score = 37.0 bits (84), Expect = 1.4
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Frame = +1
Query: 9 LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLG-SVSQGC-SWL 66
LSL LL IL + + P L + Q + L C V G S++ G +W+
Sbjct: 43 LSLLYLLTALPGILSEVQLQESGPSL--------VKPSQTLSLTCSVTGDSITSGYWNWI 198
Query: 67 FQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTN-NKYVLTLNKFSKENEG 125
+ +KL ++ Y S++ ++ L S S RDT+ N+Y L LN + E+
Sbjct: 199 RKFPGNKLEYMGYISYSGSTY----YNPSLKSR--ISITRDTSKNQYYLQLNSVTTEDTA 360
Query: 126 YYFCS 130
Y+C+
Sbjct: 361 TYYCA 375
>gb|M13281.1|MUSIGHDR Mouse Ig active mu-chain V-region (V139-D-J1) mRNA from anti-DNP
specific hybridoma TF5-139, VH 36-60 gene family
Length = 444
Score = 37.0 bits (84), Expect = 1.4
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Frame = +1
Query: 9 LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLG-SVSQGC-SWL 66
LSL LL IL + + P L + Q + L C V G S++ G +W+
Sbjct: 52 LSLLYLLTALPGILSEVQLQESGPSL--------VKPSQTLSLTCSVTGDSITSGYWNWI 207
Query: 67 FQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTN-NKYVLTLNKFSKENEG 125
+ +KL ++ Y S++ ++ L S S RDT+ N+Y L LN + E+
Sbjct: 208 RKFPGNKLEYMGYISYSGSTY----YNPSLKSR--ISITRDTSKNQYYLQLNSVTTEDTA 369
Query: 126 YYFCS 130
Y+C+
Sbjct: 370 TYYCA 384
>gb|U16687.1|MMU16687 Mus musculus Ig heavy chain leader and variable region VH 36-60
gene family subgroup I(A) mRNA, clone 9/186H8, partial
cds
Length = 405
Score = 37.0 bits (84), Expect = 1.4
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Frame = +1
Query: 9 LSLNLLLMGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLG-SVSQGC-SWL 66
LSL LL IL + + P L + Q + L C V G S++ G +W+
Sbjct: 10 LSLLYLLTALPGILSEVQLQESGPSL--------VKPSQTLSLTCSVTGDSITSGYWNWI 165
Query: 67 FQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAVRDTN-NKYVLTLNKFSKENEG 125
+ +KL ++ Y S++ ++ L S S RDT+ N+Y L LN + E+
Sbjct: 166 RKFPGNKLEYMGYISYSGSTY----YNPSLKSR--ISITRDTSKNQYYLQLNSVTTEDTA 327
Query: 126 YYFCS 130
Y+C+
Sbjct: 328 TYYCA 342
>gb|AE003417.1|AE003417 Drosophila melanogaster genomic scaffold 142000013386054 section 1 of 35,
complete sequence
Length = 314661
Score = 36.6 bits (83), Expect = 1.8
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 199 APLAGICVAPLLSLIITLICYHRSRKRVCKCPRP 232
APL IC+ PLLSL+ T + + RK KC RP
Sbjct: 303468 APLTWICLGPLLSLLSTQLLFRVERKTRLKCVRP 303367
>emb|V00804.1|MMIGK3 Murine kappa-immunoglobulin gene fragment including signal peptide
and variable region
Length = 664
Score = 36.6 bits (83), Expect = 1.8
Identities = 29/115 (25%), Positives = 48/115 (41%)
Frame = +2
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P + A LG++V L C + +WL Q + + ++Y SS +
Sbjct: 335 PSSLSASLGERVSLTCRASQDIGSSLNWLQQEPDGTIKR---LIYATSSLDS-------G 484
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNST 152
K FS R + + Y LT++ E+ Y+C + Y SS V+Q + T
Sbjct: 485 VPKRFSGSR-SGSDYSLTISSLESEDFVDYYC------LQYASSPPTVIQIIT*T 628
>emb|X75611.1|ECVK1 Equus caballus Vk1 gene
Length = 1145
Score = 36.6 bits (83), Expect = 1.8
Identities = 29/122 (23%), Positives = 53/122 (42%), Gaps = 1/122 (0%)
Frame = +2
Query: 38 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLN 97
P+ + LGQ+V++ C+ SVS +W Q P ++Y ASS D
Sbjct: 545 PESLAVSLGQRVEMKCKASQSVSSYLAWYQQKPGQ---APKRLIYAASSRASGVPDRFSG 715
Query: 98 SSKLFSAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQ-KVNSTTTKP 156
S + + LT++ E+ Y+C + ++++ VLQ + +++ KP
Sbjct: 716 SG--------SGTDFTLTISSLQAEDVAIYYC------MQHYNNPPTVLQARTQTSSPKP 853
Query: 157 VL 158
L
Sbjct: 854 WL 859
>ref|NG_000075.1| Drosophila melanogaster beta amyloid protein precursor-like (Appl) on
chromosome 1
Length = 45291
Score = 36.6 bits (83), Expect = 1.8
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 199 APLAGICVAPLLSLIITLICYHRSRKRVCKCPRP 232
APL IC+ PLLSL+ T + + RK KC RP
Sbjct: 11583 APLTWICLGPLLSLLSTQLLFRVERKTRLKCVRP 11482
>gb|AC104602.3| Drosophila melanogaster X BAC RP98-16G6 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 161668
Score = 36.6 bits (83), Expect = 1.8
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -3
Query: 199 APLAGICVAPLLSLIITLICYHRSRKRVCKCPRP 232
APL IC+ PLLSL+ T + + RK KC RP
Sbjct: 25133 APLTWICLGPLLSLLSTQLLFRVERKTRLKCVRP 25032
>emb|Z37144.1|MMAMPIGVH M.musculus rearranged anti-MPO anti