TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(576 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,171,752 sequences; 566,364,212 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_008362.1| Mus musculus interleukin 1 receptor, type ... 1189 0.0
gb|M20658.1|MUSIL1TCR Mouse interleukin-1 receptor mRNA, co... 1189 0.0
gb|M95578.1|RATIL1R Rattus notvegicus Sprague-Dawley interl... 1043 0.0
ref|XM_002686.6| Homo sapiens interleukin 1 receptor, type ... 826 0.0
ref|NM_000877.1| Homo sapiens interleukin 1 receptor, type ... 826 0.0
gb|M27492.1|HUMIL1RA Human interleukin 1 receptor mRNA, com... 826 0.0
emb|X16896.1|HSIL1RFT Human mRNA for interleukin-1 receptor... 826 0.0
dbj|AB020338.1|AB020338 Equus caballus mRNA for interleukin... 777 0.0
ref|NM_013123.1| Rattus norvegicus Interleukin 1 receptor, ... 509 e-142
gb|U14010.1|RNU14010 Rattus norvegicus soluble IL-1 recepto... 509 e-142
gb|M81846.1|CHKIL1REC Gallus gallus IL-1 receptor I mRNA, c... 437 e-120
ref|XM_002685.2| Homo sapiens interleukin 1 receptor-like 2... 356 3e-96
gb|AF284434.1|AF284434 Homo sapiens IL-1Rrp2 mRNA, complete... 356 4e-96
gb|AF284433.1|AF284433 Mus musculus IL-1Rrp2 mRNA, complete... 354 1e-95
ref|NM_003854.1| Homo sapiens interleukin 1 receptor-like 2... 354 1e-95
gb|U49065.1|HSU49065 Human interleukin-1 receptor-related p... 354 1e-95
gb|U49066.1|RNU49066 Rattus norvegicus interleukin-1 recept... 342 4e-92
gb|S70238.1|S70238 type I interleukin-1 receptor [rats, int... 311 1e-82
dbj|AB041738.2|AB041738 Gallus gallus mRNA for ST2L, comple... 246 4e-63
gb|U04317.1|RNU04317 Rattus norvegicus Fit-1M (Fit-1) mRNA,... 220 3e-55
dbj|D13695.1|MUSST2L Mus musculus mRNA for ST2L protein, co... 212 9e-53
ref|NM_030688.1| Mus musculus interkeukin 1 receptor access... 209 6e-52
gb|AF284437.1|AF284437 Mus musculus TIGIRR-1 mRNA, complete... 209 6e-52
gb|AC007271.3|AC007271 Homo sapiens BAC clone RP11-4B12 fro... 209 6e-52
ref|NM_016232.2| Homo sapiens interleukin 1 receptor-like 1... 208 1e-51
dbj|AB012701.2|AB012701 Homo sapiens mRNA for ST2L, 5' nonc... 208 1e-51
gb|AF284436.1|AF284436 Homo sapiens TIGIRR-1 mRNA, complete... 206 5e-51
gb|AF212016.1|AF212016 Homo sapiens interleukin-1 receptor ... 206 5e-51
ref|XM_034808.1| Homo sapiens interleukin 1 receptor access... 206 5e-51
ref|NM_017416.1| Homo sapiens interleukin 1 receptor access... 206 5e-51
emb|AJ272208.1|HSA272208 Homo sapiens mRNA for IL-1 recepto... 206 5e-51
emb|AJ290436.1|HSA290436 Homo sapiens mRNA for IL1RAPL-2 re... 206 5e-51
gb|AF181285.1|AF181285 Homo sapiens X-linked interleukin-1 ... 206 7e-51
dbj|AB041739.2|AB041739 Gallus gallus mRNA for ST2LV, compl... 203 4e-50
gb|AF181284.1|AF181284 Homo sapiens X-linked interleukin-1 ... 196 7e-48
ref|NM_014271.1| Homo sapiens interleukin 1 receptor access... 196 7e-48
emb|AJ243874.1|HSA243874 Homo sapiens mRNA for oligophrenin... 196 7e-48
gb|AF284435.1|AF284435 Homo sapiens TIGIRR-2 mRNA, complete... 196 7e-48
ref|NM_003855.1| Homo sapiens interleukin 18 receptor 1 (IL... 182 1e-43
gb|U43672.1|HSU43672 Human putative transmembrane receptor ... 182 1e-43
dbj|AK026803.1|AK026803 Homo sapiens cDNA: FLJ23150 fis, cl... 181 2e-43
ref|NM_008365.1| Mus musculus interleukin 18 receptor 1 (Il... 177 2e-42
gb|U43673.1|MMU43673 Mus musculus putative transmembrane re... 177 2e-42
gb|AF029213.1|AF029213 Homo sapiens IL-1 receptor accessory... 166 7e-39
gb|U48592.1|RNU48592 Rattus norvegicus interleukin-1 recept... 166 7e-39
ref|NM_012968.1| Rattus norvegicus Interleukin 1 receptor a... 166 7e-39
ref|NM_008364.1| Mus musculus interleukin 1 receptor access... 166 7e-39
emb|X85999.1|MMIL1RACP M.musculus mRNA for interleukin 1 re... 166 7e-39
ref|NM_002182.1| Homo sapiens interleukin 1 receptor access... 166 7e-39
dbj|AB006537.1|AB006537 Homo sapiens mRNA for interleukin 1... 166 7e-39
gb|AC007248.3|AC007248 Homo sapiens BAC clone RP11-315O22 f... 137 4e-30
gb|U64092.1|CGU64092 Cercopithecidae gen. sp. type II inter... 133 4e-29
ref|NM_003853.1| Homo sapiens interleukin 18 receptor acces... 132 9e-29
gb|AF077346.1|AF077346 Homo sapiens interleukin-18 receptor... 132 9e-29
gb|U74649.1|HSU74649 Human interleukin-1 receptor type II m... 130 3e-28
emb|X59770.1|HSIL1R2II H.sapiens IL-1R2 mRNA for type II in... 130 3e-28
ref|NM_004633.1| Homo sapiens interleukin 1 receptor, type ... 130 3e-28
gb|U64093.1|CGU64093 Cercopithecidae gen. sp. soluble type ... 129 1e-27
gb|U64094.1|HSU64094 Human soluble type II interleukin-1 re... 128 1e-27
dbj|AB033415.1|AB033415 Equus caballus IL-1RII mRNA for int... 122 9e-26
emb|AJ277831.1|MMU277831 Mus musculus mRNA for IL1RAPL-2 re... 120 3e-25
ref|NM_010553.1| Mus musculus interleukin 18 receptor acces... 118 1e-24
gb|AF077347.1|AF077347 Mus musculus interleukin-18 receptor... 118 1e-24
ref|NM_053953.1| Rattus norvegicus interleukin 1 receptor, ... 114 2e-23
emb|Z22812.1|RNINL1R2A R.norvegicus interleukin-1 receptor ... 114 2e-23
gb|BC012346.1|BC012346 Homo sapiens, Similar to interleukin... 112 1e-22
emb|X59769.1|MMIL1R2 Mouse Il-1r2 mRNA for type II interleu... 106 7e-21
ref|NM_010555.1| Mus musculus interleukin 1 receptor, type ... 106 7e-21
ref|NM_013037.1| Rattus norvegicus Interleukin 1 receptor-l... 98 2e-18
gb|U04319.1|RNU04319 Rattus norvegicus Fit-1S (Fit-1) mRNA,... 98 2e-18
ref|XM_013114.2| Homo sapiens interleukin 1 receptor access... 98 2e-18
gb|BC021159.1|BC021159 Mus musculus, Similar to interleukin... 94 3e-17
ref|NM_003856.1| Homo sapiens interleukin 1 receptor-like 1... 94 5e-17
dbj|D12763.1|HUMST2M Homo sapiens mRNA for ST2 protein 94 5e-17
gb|M24843.1|MUST1A Mouse T1 protein mRNA, complete cds 93 8e-17
ref|NM_010743.1| Mus musculus interleukin 1 receptor-like 1... 93 8e-17
emb|Y07519.1|MMST2 Mouse ST2 gene 93 8e-17
dbj|AB041737.2|AB041737 Gallus gallus mRNA for ST2, complet... 91 4e-16
ref|XM_036436.4| Homo sapiens interleukin 1 receptor access... 90 7e-16
gb|AF167343.1|AF167343 Homo sapiens soluble interleukin-1 r... 90 7e-16
dbj|AB041748.1|AB041740S9 Gallus gallus gene for ST2L, ST2L... 90 7e-16
gb|BC016141.1|BC016141 Homo sapiens, interleukin 1 receptor... 88 3e-15
gb|BC012580.1|BC012580 Homo sapiens, Similar to interleukin... 78 3e-12
gb|BC004628.1|BC004628 Mus musculus, clone IMAGE:3585952, mRNA 77 4e-12
emb|AJ276474.2|OMY276474 Oncorhynchus mykiss mRNA for inter... 76 1e-11
dbj|AB029084.1|AB029084 Homo sapiens ST2V mRNA, complete cds 74 3e-11
emb|AJ277110.1|EVI277110 Ectromelia virus IL1RB for Interle... 64 4e-08
dbj|AB041747.1|AB041740S8 Gallus gallus st2 gene, exon 11 64 4e-08
gb|AF012825.1|AF012825 Ectromelia virus envelope glycoprote... 64 4e-08
gb|BC003591.1|BC003591 Homo sapiens, single Ig IL-1R-relate... 63 7e-08
ref|NM_021805.1| Homo sapiens single Ig IL-1R-related molec... 63 7e-08
dbj|AK025099.1|AK025099 Homo sapiens cDNA: FLJ21446 fis, cl... 63 7e-08
gb|S78201.1|S78201 Sheeppox virus strain KS-1 Q2/1L (Q2/1L)... 63 9e-08
gb|AF325528.1|AF325528 Lumpy skin disease virus isolate Nee... 63 9e-08
emb|Z81144.1|HSU129B7 Human DNA sequence from cosmid U129B7... 62 2e-07
gb|AF380138.1|AF380138 Monkeypox virus strain Zaire-96-I-16... 61 3e-07
ref|NM_023059.1| Mus musculus single Ig IL-1 receptor relat... 60 4e-07
gb|AF113795.1|AF113795 Mus musculus toll/interleukin-1 rece... 60 4e-07
emb|Y15035.1|CVY15035 Cowpox virus strain GRI-90 DNA (49 kb... 60 8e-07
emb|AL117666.1|HSM801204 Homo sapiens mRNA; cDNA DKFZp586O1... 59 1e-06
gb|AF381545.1|AF381545 Homo sapiens membrane glycoprotein L... 59 1e-06
gb|AF336128.1|AF336128S1 Lumpy skin disease virus strain Ne... 59 1e-06
ref|XM_033712.3| Homo sapiens ortholog of mouse integral me... 59 1e-06
dbj|AB050468.1|AB050468 Homo sapiens mRNA for membrane glyc... 59 1e-06
gb|AF095689.1|AF095689 Vaccinia virus (strain Tian Tan) com... 59 2e-06
gb|M35027.1|VACCG Vaccinia virus, complete genome 58 2e-06
gb|BC010806.1|BC010806 Mus musculus, Similar to single Ig I... 55 1e-05
gb|U94848.1|U94848 Vaccinia virus strain Ankara, complete g... 55 2e-05
emb|X56121.1|VVB15RG Vaccinia virus B15R gene for 36.5 kDa ... 54 3e-05
dbj|D01018.1|VACB15RW Vaccinia virus DNA for B15R protein, ... 54 3e-05
emb|AL031575.1|HS127F18 Human DNA sequence from clone 127F1... 54 3e-05
ref|XM_093169.1| Homo sapiens similar to dA127F18.1 (PUTATI... 54 3e-05
dbj|D11079.1|VACRHF Vaccinia virus genomic DNA, 42kbp from ... 54 3e-05
ref|XM_046808.4| Homo sapiens KIAA0756 protein (KIAA0756), ... 54 5e-05
gb|L11002.1|RATANKBIND Rat ankyrin binding glycoprotein-1 r... 53 7e-05
ref|NM_008377.1| Mus musculus integral membrane glycoprotei... 53 7e-05
dbj|D78572.1|D78572 Mus musculus mRNA for membrane glycopro... 53 7e-05
gb|AF461119.1|AF461119 Xenopus laevis roundabout-1 (robo1) ... 53 7e-05
gb|U81036.1|RNU81036 Rattus norvegicus ankyrin binding cell... 53 7e-05
gb|AF410153.1| Swinepox virus isolate 17077-99, complete ge... 53 7e-05
gb|AF239957.1|AF239957 Mus musculus single Ig IL-1R-related... 53 9e-05
gb|M95202.1|PXRIL1XX Poxvirus interleukin-1 binding protein... 53 9e-05
emb|Z95705.1|HSDUTT1 Human DNA sequence from cDNA DUTT1 on ... 51 4e-04
ref|NM_008011.1| Mus musculus fibroblast growth factor rece... 50 6e-04
emb|X59927.1|MMFGFR4M M.musculus mRNA for fibroblast growth... 50 6e-04
ref|NM_077235.1| Ig superfamily repeats (I-type) 50 8e-04
dbj|AK018522.1|AK018522 Mus musculus adult male colon cDNA,... 50 8e-04
ref|NM_077234.1| IG (immunoglobulin) superfamily (47 domains) 50 8e-04
gb|AF074901.1|AF074901 Caenorhabditis elegans hemicentin pr... 50 8e-04
ref|NM_008478.2| Mus musculus L1 cell adhesion molecule (L1... 49 0.001
emb|X12875.1|MMNCAML1 Mouse mRNA for neural cell adhesion m... 49 0.001
ref|NM_017345.1| Rattus norvegicus neural cell adhesion mol... 49 0.001
emb|X59149.1|RNNCAML1 Rat mRNA for neural cell adhesion mol... 49 0.001
ref|NM_002941.1| Homo sapiens roundabout, axon guidance rec... 49 0.001
gb|AF040990.1|AF040990 Homo sapiens roundabout 1 (robo1) mR... 49 0.001
ref|XM_053531.3| Homo sapiens fibulin 6 (FIBL-6), mRNA 49 0.002
dbj|AB018299.1|AB018299 Homo sapiens mRNA for KIAA0756 prot... 49 0.002
emb|X60184.1|MMST2G Mouse ST2 gene for growth-associated pr... 49 0.002
ref|NM_014813.1| Homo sapiens KIAA0806 gene product (KIAA08... 48 0.002
dbj|AB018349.1|AB018349 Homo sapiens mRNA for KIAA0806 prot... 48 0.002
gb|AC008182.2|AC008182 Drosophila melanogaster, chromosome ... 48 0.003
gb|AE003623.1|AE003623 Drosophila melanogaster genomic scaf... 48 0.003
gb|L25393.1|SCATOLLD Schistocerca americana Toll protein, p... 48 0.003
emb|Y17793.1|MMU17793 Mus musculus mRNA for Dutt1 protein 48 0.003
ref|XM_078936.1| Toll-4, mRNA 48 0.003
ref|NM_078925.1| Drosophila melanogaster Down syndrome cell... 48 0.003
gb|AC009197.8| Drosophila melanogaster, chromosome 2L, regi... 48 0.003
emb|X65224.1|GGNEUFASC G.gallus mRNA for neurofascin 47 0.004
ref|NM_022188.1| Rattus norvegicus roundabout homolog 1 (Dr... 47 0.004
gb|AF041082.1|AF041082 Rattus norvegicus transmembrane rece... 47 0.004
gb|AC007165.3|AC007165 Homo sapiens BAC clone RP11-451C2, c... 47 0.004
gb|AF247768.1|AF247768 Drosophila melanogaster Toll-4 mRNA,... 47 0.005
gb|AF156100.1|AF156100 Homo sapiens hemicentin mRNA, comple... 47 0.005
gb|U81035.1|RNU81035 Rattus norvegicus ankyrin binding cell... 47 0.005
gb|AY061639.1| Rattus norvegicus neurofascin 155 kDa isofor... 47 0.005
emb|Z68328.1|HSU72E5 Human DNA sequence from cosmid cU72E5,... 47 0.005
gb|AY075169.1| Drosophila melanogaster AT05815 full length ... 47 0.007
emb|AJ306906.1|HSA306906 Homo sapiens partial mRNA for fibu... 46 0.011
ref|NM_013225.1| Rattus norvegicus contactin 6 (Cntn6), mRNA 45 0.015
dbj|D87248.1|D87248 Rattus norvegicus mRNA for NB-3, comple... 45 0.015
gb|AF260530.1|AF260530 Drosophila melanogaster Dscam gene, ... 45 0.015
dbj|AK056557.1|AK056557 Homo sapiens cDNA FLJ31995 fis, clo... 45 0.019
gb|AE003841.2|AE003841 Drosophila melanogaster genomic scaf... 45 0.019
gb|AC009739.3|AC009739 Drosophila melanogaster, chromosome ... 45 0.019
gb|M74387.1|HUML1CAM Human cell adhesion molecule L1 (L1CAM... 45 0.019
ref|NM_024003.1| Homo sapiens L1 cell adhesion molecule (hy... 45 0.019
gb|M77640.1|HUMIGL1A Homo sapiens L1 cell adhesion molecule... 45 0.019
ref|NM_000425.2| Homo sapiens L1 cell adhesion molecule (hy... 45 0.019
ref|NM_017383.1| Mus musculus contactin 6 (Cntn6), mRNA 45 0.025
dbj|AB032602.1|AB032602 Mus musculus mNB-3 mRNA for neural ... 45 0.025
emb|Y14852.1|OCY14852 Oryctolagus cuniculus mRNA for tintin... 45 0.025
gb|M77165.1|DROFAS2A D.melanogaster fasciclin II (Fas2) mRN... 44 0.033
ref|NM_080327.1| Drosophila melanogaster Fasciclin 2 (Fas2)... 44 0.033
gb|M77166.1|DROFAS2B D.melanogaster fasciclin II (Fas2) mRN... 44 0.033
gb|U80022.2| Caenorhabditis elegans cosmid F12F3, complete ... 44 0.033
dbj|AK056544.1|AK056544 Homo sapiens cDNA FLJ31982 fis, clo... 44 0.033
ref|NM_072181.1| titin 44 0.033
emb|X16841.1|HSNCAME Human mRNA for a nontransmembrane isof... 44 0.043
ref|NM_000615.1| Homo sapiens neural cell adhesion molecule... 44 0.043
gb|S71824.1|S71824 N-CAM=145 kda neural cell adhesion molec... 44 0.043
emb|X16451.1|BTADCYC Bovine mRNA for calmoduline-independen... 44 0.043
ref|XM_080991.1| off-track, mRNA 44 0.043
gb|AF003131.1| Caenorhabditis elegans cosmid C09D1, complet... 44 0.056
gb|AF001286.1|AF001286 Mus musculus OCAM-GPI protein precur... 44 0.056
gb|AC084594.1|CBRG42E21 Caenorhabditis briggsae cosmid G42E... 44 0.056
ref|NM_058889.1| immunoglobin-like protein 44 0.056
gb|AF129167.1|AF129167 Chlorocebus aethiops neural cell adh... 44 0.056
ref|NM_010954.1| Mus musculus neural cell adhesion molecule... 44 0.056
gb|AF016619.1|AF016619 Mus musculus Rb-8 neural cell adhesi... 44 0.056
gb|AF337036.1|AF337036 Danio rerio roundabout3 (robo3) mRNA... 44 0.056
ref|NM_078981.1| Drosophila melanogaster off-track (otk), mRNA 44 0.056
emb|X63453.1|DMDTRK D.melanogaster mRNA for gp160-Dtrk 44 0.056
gb|AF001287.1|AF001287 Mus musculus OCAM-TM protein precurs... 44 0.056
gb|AF304131.1|AF304131 Danio rerio transmembrane receptor R... 44 0.056
gb|U33058.1|CEU33058 Caenorhabditis elegans UNC-89 (unc-89)... 43 0.073
ref|NM_017358.1| Rattus norvegicus immunoglobulin superfami... 43 0.073
gb|AF004840.1|AF004840 Rattus norvegicus CDO (cdo) mRNA, co... 43 0.073
gb|AC104703.1| Drosophila melanogaster 3L BAC RP98-35M1 (Ro... 43 0.096
dbj|AK057509.1|AK057509 Homo sapiens cDNA FLJ32947 fis, clo... 43 0.096
gb|AF444783.1|AF444783 Anopheles gambiae Trex gene, complet... 43 0.096
ref|XM_041415.1| Homo sapiens neural cell adhesion molecule... 43 0.096
ref|XM_079233.1| Leukocyte-antigen-related-like, mRNA 43 0.096
ref|NM_078880.1| Drosophila melanogaster Leukocyte-antigen-... 43 0.096
gb|M27700.1|DROLARM D.melanogaster protein tyrosine phospha... 43 0.096
emb|X90569.1|HSTITINN2 H.sapiens mRNA for titin protein (cl... 43 0.096
gb|AE003536.2|AE003536 Drosophila melanogaster genomic scaf... 43 0.096
ref|XM_090120.1| Homo sapiens similar to unnamed protein pr... 43 0.096
gb|AC010573.3| Drosophila melanogaster 3L BAC RPCI98-2M13 (... 43 0.096
emb|AJ001057.1|HSC7NRCAM Homo sapiens mRNA for NrCAM protein 42 0.12
ref|XM_081958.1| Poly-glutamine tract binding protein 1, mRNA 42 0.12
gb|AF337034.1|AF337034 Danio rerio roundabout1 (robo1) mRNA... 42 0.12
ref|XM_009705.5| Homo sapiens neural cell adhesion molecule... 42 0.12
emb|X14877.1|GGF11 Gallus gallus mRNA for neural cell recog... 42 0.12
emb|Y00813.1|GGCONTAC Chicken mRNA for contactin 42 0.12
gb|AF167341.1|F167333S09 Homo sapiens membrane interleukin ... 42 0.12
ref|XM_027222.2| Homo sapiens neuronal cell adhesion molecu... 42 0.16
gb|AC091227.2| Drosophila melanogaster 3L BAC RP98-17F24 (R... 42 0.16
gb|AF247764.1|AF247764 Drosophila melanogaster Toll-8 mRNA,... 42 0.16
gb|AE003531.2|AE003531 Drosophila melanogaster genomic scaf... 42 0.16
gb|U55258.1|HSU55258 Human hBRAVO/Nr-CAM precursor (hBRAVO/... 42 0.16
gb|AF204158.1|AF204158 Drosophila melanogaster cell surface... 42 0.16
ref|NM_004540.1| Homo sapiens neural cell adhesion molecule... 42 0.16
gb|U75330.1|HSU75330 Human neural cell adhesion protein (NC... 42 0.16
dbj|AB040929.1|AB040929 Homo sapiens mRNA for KIAA1496 prot... 42 0.16
gb|AF202063.1|AF202063 Homo sapiens fibroblast growth facto... 42 0.16
emb|Z74477.1|HSU42H12 Human DNA sequence from cosmid U42H12... 42 0.16
ref|NM_005010.1| Homo sapiens neuronal cell adhesion molecu... 42 0.16
dbj|AB002341.1|AB002341 Human mRNA for KIAA0343 gene, compl... 42 0.16
gb|M91599.1|RATFGR4A Rat fibroblast growth factor receptor ... 42 0.16
gb|BC011847.1|BC011847 Homo sapiens, fibroblast growth fact... 42 0.21
ref|XM_078938.1| echinoid, mRNA 42 0.21
ref|NM_078745.1| Drosophila melanogaster echinoid (ed), mRNA 42 0.21
ref|NM_022963.1| Homo sapiens fibroblast growth factor rece... 42 0.21
gb|AF275903.1|AF275903 Drosophila melanogaster echinoid (ed... 42 0.21
gb|BC012380.1|BC012380 Homo sapiens, clone IMAGE:3862624, mRNA 42 0.21
emb|AJ309935.1|GGA309935 Gallus gallus mRNA for FAR-2 protein 42 0.21
ref|NM_002011.2| Homo sapiens fibroblast growth factor rece... 42 0.21
gb|L03840.1|HUMFGFR4X Human fibroblast growth factor recept... 42 0.21
gb|AF359246.1|AF359246 Homo sapiens fibroblast growth facto... 42 0.21
gb|AF334384.1|AF334384 Homo sapiens Down syndrome cell adhe... 41 0.28
dbj|AB032958.1|AB032958 Homo sapiens mRNA for KIAA1132 prot... 41 0.28
ref|XM_052054.4| Homo sapiens Downs syndrome cell adhesion ... 41 0.28
gb|U81037.1|RNU81037 Rattus norvegicus ankyrin binding cell... 41 0.28
ref|NM_014461.1| Homo sapiens contactin 6 (CNTN6), mRNA 41 0.28
dbj|AB003592.1|AB003592 Homo sapiens mRNA for neural adhesi... 41 0.28
emb|X15049.1|MMNCAMRI Mouse common mRNA of NCAM isoforms 41 0.28
ref|NM_031521.1| Rattus norvegicus Cell adhesion molecule, ... 41 0.28
emb|X06564.1|RNNCAM14 Rat mRNA for 140-kD NCAM polypeptide 41 0.28
emb|X57205.1|HSFGFR4 Human FGFR-4 mRNA for fibroblast growt... 41 0.28
gb|AF005070.1|AF005070 Homo sapiens neural cell adhesion mo... 41 0.28
dbj|AK025940.1|AK025940 Homo sapiens cDNA: FLJ22287 fis, cl... 41 0.28
emb|X69198.1|VVCGAA Variola virus DNA complete genome 41 0.36
dbj|AK017447.1|AK017447 Mus musculus 10 days neonate head c... 41 0.36
emb|X74031.1|DMDFR2 D.melanogaster DFR2 gene for FGF-recept... 41 0.36
gb|AE003473.1|AE003473 Drosophila melanogaster genomic scaf... 41 0.36
ref|NM_010875.1| Mus musculus neural cell adhesion molecule... 41 0.36
emb|X57746.1|DMFGFR D.melanogaster FGF-R gene for fibroblas... 41 0.36
gb|BC016214.1|BC016214 Mus musculus, titin immunoglobulin d... 41 0.36
emb|AJ271740.1|DME271740 Drosophila melanogaster D-Titin ge... 41 0.36
ref|XM_070947.1| Homo sapiens hypothetical gene LOC138524 (... 41 0.36
ref|NM_021484.2| Mus musculus titin immunoglobulin domain p... 41 0.36
gb|AF230979.2|AF230979 Mus musculus myotilin mRNA, complete... 41 0.36
emb|X67117.1|VVXHOIFOH Variola virus (XhoI-F,O,H,P,Q genome... 41 0.36
ref|NM_019329.1| Rattus norvegicus Plasmacytoma-associated ... 41 0.36
gb|U11031.1|RNU11031 Rattus norvegicus neural cell adhesion... 41 0.36
emb|Y00051.1|MMNCAMR Mouse mRNA for neural cell adhesion mo... 41 0.36
gb|U63041.1|HSU63041 Human neural cell adhesion molecule CD... 41 0.36
gb|U18341.1|VVU18341 Variola virus Somalia-1977 right near-... 41 0.36
gb|L22579.1|VARCG Variola major virus (strain Bangladesh-19... 41 0.36
gb|BC011310.1|BC011310 Mus musculus, clone MGC:12077 IMAGE:... 40 0.47
gb|AC007579.4|AC007579 Drosophila melanogaster, chromosome ... 40 0.47
gb|AY029403.1| Danio rerio cell adhesion molecule OCAM mRNA... 40 0.47
gb|AC087076.1|AC087076 Caenorhabditis briggsae cosmid CB032... 40 0.47
gb|AE003808.2|AE003808 Drosophila melanogaster genomic scaf... 40 0.47
gb|AC004516.1|AC004516 Drosophila melanogaster DNA sequence... 40 0.47
gb|AC007278.3|AC007278 Homo sapiens BAC clone RP11-308G20 f... 40 0.47
gb|U18339.1|VVU18339 Variola virus Garcia-1966 right near-t... 40 0.62
emb|X72086.1|VMVGEN Variola minor virus complete genome 40 0.62
gb|U70618.1|CEU70618 Caenorhabditis elegans unc-40 mRNA, co... 40 0.62
gb|AF135167.1|AF135167 Drosophila melanogaster titin (Titin... 40 0.62
gb|U55211.1|CAU55211 Carassius auratus L1-like cell adhesio... 40 0.62
ref|NM_059263.1| membrane protein 40 0.62
gb|AF296370.1|AF296370 Oncorhynchus mykiss MHC class I heav... 40 0.62
gb|AF241649.1|AF241649 Drosophila melanogaster titin gene, ... 40 0.62
ref|NM_008988.1| Mus musculus putative neuronal cell adhesi... 40 0.62
gb|AF287486.1|AF287486 Oncorhynchus mykiss MHC class I heav... 40 0.62
gb|AF026465.1|AF026465 Mus musculus putative neuronal cell ... 40 0.62
emb|Y16780.1|VMVY16780 variola minor virus complete genome 40 0.62
gb|AY051592.1| Drosophila melanogaster GH23463 full length ... 40 0.81
ref|NM_005529.2| Homo sapiens heparan sulfate proteoglycan ... 40 0.81
emb|X62515.1|HSBMHSP H.sapiens mRNA for basement membrane h... 40 0.81
gb|AF296376.1|AF296376 Salmo trutta MHC class I heavy chain... 40 0.81
ref|NM_008779.1| Mus musculus contactin 3 (Cntn3), mRNA 40 0.81
gb|L01991.1|MUSNGP Mus musculus TAFG-1-like neuronal glycop... 40 0.81
gb|AF438165.1| Camelpox virus isolate M-96 from Kazakhstan,... 40 0.81
ref|NG_000232.1| Drosophila melanogaster 18 wheeler (18w) o... 40 0.81
gb|AC099012.1| Drosophila melanogaster, chromosome 2R, regi... 40 0.81
ref|NM_008305.1| Mus musculus perlecan (heparan sulfate pro... 40 0.81
emb|X59847.1|HSNCAML1 H.sapiens mRNA for neural cell adhesi... 40 0.81
gb|M77174.1|MUSPERPA Mouse perlecan mRNA, complete cds 40 0.81
ref|NM_057466.1| Drosophila melanogaster 18 wheeler (18w), ... 40 0.81
emb|X65059.1|PWFGFR4 P.waltlii mRNA for fibroblast growth f... 40 0.81
gb|AE003793.2|AE003793 Drosophila melanogaster genomic scaf... 40 0.81
gb|AC005286.1|AC005286 Drosophila melanogaster DNA sequence... 40 0.81
gb|AC078963.16|AC078963 Homo sapiens 12q BAC RP11-362K2 (Ro... 39 1.1
emb|AJ245406.1|DME245406 Drosophila melanogaster partial ke... 39 1.1
dbj|AB035506.1|AB035506 Rattus norvegicus mRNA for l-giceri... 39 1.1
ref|NM_023983.1| Rattus norvegicus mRNA for l-gicerin/MUC18... 39 1.1
dbj|AB035507.1|AB035507 Rattus norvegicus mRNA for s-giceri... 39 1.1
emb|X61992.1|GGBEK G.gallus mRNA bek for receptor tyrosine ... 39 1.1
dbj|AB030076.1|AB030076 Homo sapiens mRNA for K-sam-IIO1, c... 39 1.4
dbj|AB030074.1|AB030074 Homo sapiens mRNA for K-sam-IIH2, p... 39 1.4
ref|NM_022976.1| Homo sapiens fibroblast growth factor rece... 39 1.4
ref|NM_022974.1| Homo sapiens fibroblast growth factor rece... 39 1.4
emb|X56191.1|HSBFR Human bfr mRNA for fibroblast growth fac... 39 1.4
gb|M97193.1|HUMFGFR2A Homo sapiens fibroblast growth factor... 39 1.4
gb|M35718.1|HUMKSAMAA Human heparin-binding growth factor r... 39 1.4
ref|NM_023031.1| Homo sapiens fibroblast growth factor rece... 39 1.4
dbj|AB030073.1|AB030073 Homo sapiens mRNA for K-sam-IIH1, c... 39 1.4
dbj|AK026508.1|AK026508 Homo sapiens cDNA: FLJ22855 fis, cl... 39 1.4
ref|NM_023030.1| Homo sapiens fibroblast growth factor rece... 39 1.4
gb|M85289.1|HUMHSPG2B Human heparan sulfate proteoglycan (H... 39 1.4
ref|XM_033657.2| Homo sapiens heparan sulfate proteoglycan ... 39 1.4
ref|NM_022975.1| Homo sapiens fibroblast growth factor rece... 39 1.4
dbj|AB030077.1|AB030077 Homo sapiens mRNA for K-sam-IIO2, c... 39 1.4
gb|U11814.1|HSU11814 Human soluble keratinocyte growth fact... 39 1.4
dbj|D90076.1|VACSANT Vaccinia virus surface(S) antigen 39 1.4
ref|NM_017348.1| Rattus norvegicus choline transporter (CHO... 39 1.4
dbj|AB030078.1|AB030078 Homo sapiens mRNA for K-sam-IIO3, c... 39 1.4
emb|X66494.1|RNCHOT1 R.norvegicus CHOT1 mRNA 39 1.4
ref|NM_022969.1| Homo sapiens fibroblast growth factor rece... 39 1.4
dbj|AB030075.1|AB030075 Homo sapiens mRNA for K-sam-IIH3, c... 39 1.4
gb|M80634.1|HUMKGFRA Human keratinocyte growth factor recep... 39 1.4
gb|AF304130.1|AF304130 Danio rerio transmembrane receptor R... 39 1.4
gb|M63437.1|CHKKLGG Chicken KLG gene, complete cds 39 1.8
gb|AF211257.1|AF211257 Canis familiaris fibroblast growth f... 39 1.8
gb|L23171.1|DROWHEELER Drosophila melanogaster wheeler mRNA... 39 1.8
dbj|AB013803.2|AB013803 Homo sapiens mRNA for hNB-2s, compl... 39 1.8
ref|XM_012030.4| Homo sapiens contactin 5 (CNTN5), mRNA 39 1.8
dbj|AB035509.1|AB035509 Mus musculus mRNA for s-gicerin/MUC... 39 1.8
gb|U68726.1|RNU68726 Rattus norvegicus neogenin mRNA, parti... 39 1.8
ref|NM_014361.1| Homo sapiens contactin 5 (CNTN5), mRNA 39 1.8
dbj|AB013802.2|AB013802 Homo sapiens mRNA for hNB-2, comple... 39 1.8
ref|NM_011248.1| Mus musculus retinoblastoma inhibiting gen... 39 1.8
gb|AF060570.1|AF060570 Mus musculus rig-1 protein mRNA, com... 39 1.8
ref|NM_023061.1| Mus musculus melanoma cell adhesion molecu... 39 1.8
dbj|AB035508.1|AB035508 Mus musculus mRNA for l-gicerin/MUC... 39 1.8
gb|AC007157.6|AC007157 Homo sapiens, clone hRPK.78_A_1, com... 38 2.4
gb|AF030379.1|AF030379 Bos taurus tyrosine kinase receptor ... 38 2.4
emb|AL442064.10|AL442064 Human DNA sequence from clone RP11... 38 2.4
dbj|AK055684.1|AK055684 Homo sapiens cDNA FLJ31122 fis, clo... 38 2.4
dbj|AB041742.1|AB041740S3 Gallus gallus st2 gene, exon 3, 4, 5 38 2.4
emb|AL360267.10|AL360267 Human DNA sequence from clone RP11... 38 2.4
ref|NM_053025.1| Homo sapiens myosin, light polypeptide kin... 38 3.1
gb|U48959.2|HSU48959 Homo sapiens myosin light chain kinase... 38 3.1
ref|NM_053029.1| Homo sapiens myosin, light polypeptide kin... 38 3.1
ref|NM_053028.1| Homo sapiens myosin, light polypeptide kin... 38 3.1
ref|XM_047536.2| Homo sapiens obscurin, cytoskeletal calmod... 38 3.1
ref|NM_053026.1| Homo sapiens myosin, light polypeptide kin... 38 3.1
gb|AF069601.2|AF069601 Homo sapiens myosin light chain kina... 38 3.1
gb|AF069603.1|AF069603 Homo sapiens myosin light chain kina... 38 3.1
gb|AF069602.1|AF069602 Homo sapiens myosin light chain kina... 38 3.1
dbj|AK056336.1|AK056336 Homo sapiens cDNA FLJ31774 fis, clo... 38 3.1
ref|NM_053027.1| Homo sapiens myosin, light polypeptide kin... 38 3.1
emb|AJ002535.1|HSAJ2535 Homo sapiens mRNA for obscurin (OBS... 38 3.1
gb|AC024886.20| Homo sapiens 3 BAC RP11-25K24 (Roswell Park... 37 4.0
emb|X56122.1|VVB18RG Vaccinia virus B18R gene for 40.7 kDa ... 37 4.0
dbj|AB028984.1|AB028984 Homo sapiens mRNA for KIAA1061 prot... 37 4.0
dbj|D01019.1|VACB18RW Vaccinia virus DNA for B18R protein, ... 37 4.0
ref|XM_048786.3| Homo sapiens KIAA1061 protein (KIAA1061), ... 37 4.0
ref|NM_023028.1| Homo sapiens fibroblast growth factor rece... 37 4.0
gb|M55614.1|HUMTK14 Human fibroblast growth factor receptor... 37 4.0
emb|Z47068.1|CEF15G9 Caenorhabditis elegans cosmid F15G9, c... 37 4.0
ref|NM_000141.2| Homo sapiens fibroblast growth factor rece... 37 4.0
gb|AF261890.1|AF261890 BeAn 58058 virus soluble IFN recepto... 37 4.0
ref|NM_022973.1| Homo sapiens fibroblast growth factor rece... 37 4.0
ref|NM_023029.1| Homo sapiens fibroblast growth factor rece... 37 4.0
gb|M87770.1|HUMKSAMI Human fibroblast growth factor recepto... 37 4.0
ref|NM_022972.1| Homo sapiens fibroblast growth factor rece... 37 4.0
emb|X52832.1|HSFGFRBE Human bek mRNA for fibroblast growth ... 37 4.0
emb|Z69640.1|HSFGFR2UB H.sapiens fgfr2 gene (exon 5) 37 4.0
emb|Z69641.1|HSFGFR2UA H.sapiens fgfr2 gene 37 4.0
emb|Z71929.1|HSFGFR2MR H.sapiens FGFR2 mRNA 37 4.0
gb|U58466.1|RNU58466 Rattus norvegicus fibroblast growth fa... 37 5.2
gb|AF289030.1|AF289030 Homo sapiens Down syndrome cell adhe... 37 5.2
ref|XM_049776.3| Homo sapiens Down syndrome cell adhesion m... 37 5.2
ref|NM_012884.1| Rattus norvegicus Transient axonal glycopr... 37 5.2
gb|AF217525.1|AF217525 Homo sapiens clone cDSC1 Down syndro... 37 5.2
gb|M31725.1|RATTAG1 Rat axonal glycoprotein (TAG-1), mRNA, ... 37 5.2
gb|S76155.1|S76155 tlr=Toll-like receptor [Drosophila melan... 37 5.2
ref|NM_001389.1| Homo sapiens Down syndrome cell adhesion m... 37 5.2
gb|AF023450.1|AF023450 Homo sapiens CHD2-52 Down syndrome c... 37 5.2
emb|AL049634.8|HSJ576H24 Human DNA sequence from clone RP4-... 37 5.2
dbj|AB055862.1|AB055862 Procambarus clarkii mRNA for Kettin... 37 5.2
dbj|AB055861.1|AB055861 Procambarus clarkii I-con mRNA for ... 37 5.2
ref|NM_008029.1| Mus musculus FMS-like tyrosine kinase 4 (F... 37 5.2
gb|AF023449.1|AF023449 Homo sapiens CHD2-42 Down syndrome c... 37 5.2
gb|L07296.1|MUSRTKA Mus musculus receptor tyrosine kinase (... 37 5.2
gb|AC008249.14|AC008249 Homo sapiens 3q27 BAC RPCI11-211P13... 37 6.8
gb|M35195.1|CHKCEK2 Chicken tyrosine kinase (cek2) mRNA, co... 37 6.8
ref|NM_021339.1| Mus musculus cell adhesion molecule-relate... 37 6.8
gb|AF090866.1|AF090866 Mus musculus CDO (Cdo) mRNA, complet... 37 6.8
dbj|D86983.1|D86983 Human mRNA for KIAA0230 gene, partial cds 37 6.8
ref|NM_075741.1| neural cell adhesion molecule 37 6.8
dbj|D16541.1|CHKCONNE Gallus gallus gene for connectin, par... 37 6.8
gb|AF456360.1|AF456360 Caenorhabditis elegans immunoglobuli... 37 6.8
emb|AJ319805.1|EVI319805 Ectromelia virus gene for interfer... 37 6.8
emb|AJ319804.1|EVI319804 Ectromelia virus gene for interfer... 37 6.8
gb|AY005483.1| Mus musculus Down syndrome cell adhesion mol... 37 6.8
gb|AF200348.1|AF200348 Homo sapiens melanoma-associated ant... 37 6.8
ref|NM_031174.1| Mus musculus Down syndrome cell adhesion m... 37 6.8
gb|AF315558.1|AF315558 Mus musculus Down syndrome cell adhe... 37 6.8
gb|AF167336.1|F167333S04 Homo sapiens interleukin 1 recepto... 37 6.8
dbj|D83390.1|D83390 Gallus gallus mRNA for connectin/titin,... 37 6.8
ref|NM_079904.1| Drosophila melanogaster perlecan (pcan), mRNA 37 6.8
ref|NM_060134.1| Caenorhabditis elegans 36 8.9
ref|NM_006790.1| Homo sapiens titin immunoglobulin domain p... 36 8.9
gb|AF144477.1|AF144477 Homo sapiens myotilin mRNA, complete... 36 8.9
ref|XM_056455.1| Homo sapiens Melanoma associated gene (D2S... 36 8.9
gb|BC005376.1|BC005376 Homo sapiens, titin immunoglobulin d... 36 8.9
gb|AF334385.1|AF334385 Rattus norvegicus Down syndrome cell... 36 8.9
gb|BC014276.1|BC014276 Homo sapiens, Similar to ortholog of... 36 8.9
dbj|AB052621.1|AB052621 Mus musculus DDM36E mRNA, complete cds 36 8.9
dbj|AB052620.1|AB052620 Mus musculus DDM36 mRNA, complete cds 36 8.9
dbj|AB056375.1|AB056375 Macaca fascicularis brain cDNA, clo... 36 8.9
gb|L25392.1|SCATOLLC Schistocerca americana Toll protein 1,... 36 8.9
gb|AF351196.1|AF351196 Mus musculus Down syndrome cell adhe... 36 8.9
emb|X52876.1|GGFMYLCK G.gallus mRNA for fibroblast myosin l... 36 8.9
gb|AF133820.2|AF133820 Homo sapiens titin-like protein (TTI... 36 8.9
ref|NM_060135.1| Drosophila amalgam protein like 36 8.9
gb|U23839.1|DRU23839 Danio rerio fibroblast growth factor r... 36 8.9
>ref|NM_008362.1| Mus musculus interleukin 1 receptor, type I (Il1r1), mRNA
Length = 4740
Score = 1189 bits (3077), Expect = 0.0
Identities = 576/576 (100%), Positives = 576/576 (100%)
Frame = +3
Query: 1 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW
Sbjct: 225 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 404
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND
Sbjct: 405 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 584
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 180
PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV
Sbjct: 585 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 764
Query: 181 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 240
KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE
Sbjct: 765 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 944
Query: 241 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 300
ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN
Sbjct: 945 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 1124
Query: 301 ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 360
ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK
Sbjct: 1125ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 1304
Query: 361 VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 420
VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG
Sbjct: 1305VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 1484
Query: 421 QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 480
QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA
Sbjct: 1485QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 1664
Query: 481 LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 540
LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ
Sbjct: 1665LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 1844
Query: 541 MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 576
MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG
Sbjct: 1845MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 1952
>gb|M20658.1|MUSIL1TCR Mouse interleukin-1 receptor mRNA, complete cds
Length = 4740
Score = 1189 bits (3077), Expect = 0.0
Identities = 576/576 (100%), Positives = 576/576 (100%)
Frame = +3
Query: 1 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW
Sbjct: 225 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 404
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND
Sbjct: 405 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 584
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 180
PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV
Sbjct: 585 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 764
Query: 181 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 240
KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE
Sbjct: 765 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 944
Query: 241 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 300
ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN
Sbjct: 945 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 1124
Query: 301 ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 360
ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK
Sbjct: 1125ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 1304
Query: 361 VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 420
VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG
Sbjct: 1305VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 1484
Query: 421 QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 480
QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA
Sbjct: 1485QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 1664
Query: 481 LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 540
LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ
Sbjct: 1665LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 1844
Query: 541 MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 576
MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG
Sbjct: 1845MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 1952
>gb|M95578.1|RATIL1R Rattus notvegicus Sprague-Dawley interleukin-1 receptor type I
mRNA, complete cds
Length = 2187
Score = 1043 bits (2697), Expect = 0.0
Identities = 492/576 (85%), Positives = 538/576 (92%)
Frame = +1
Query: 1 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
+ENMKVLLG ICL+VPLLSLE D CTEYPN+++ F SVNEIDIR CPLTPN+MHG TIIW
Sbjct: 364 LENMKVLLGFICLIVPLLSLETDKCTEYPNEVISFSSVNEIDIRSCPLTPNEMHGGTIIW 543
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
YKNDSKTPISAD+DSRIHQQNEHLWFVPAK+EDSGYYYCI+RNSTYCLKTK+T++VLEND
Sbjct: 544 YKNDSKTPISADKDSRIHQQNEHLWFVPAKMEDSGYYYCIMRNSTYCLKTKITMSVLEND 723
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 180
PGLCY+TQA+F QRLH+AGDGSLVCPY+ +FKDENNELP+VQWYKNCKPL LD+ +FFG
Sbjct: 724 PGLCYNTQASFIQRLHVAGDGSLVCPYLDFFKDENNELPKVQWYKNCKPLPLDDGNFFGF 903
Query: 181 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 240
K+KL+V NVAEEHRG+Y CR SYT++GKQYPVTRVI FITID++KRDRPVI+SPRNET+E
Sbjct: 904 KNKLMVMNVAEEHRGNYTCRTSYTYQGKQYPVTRVITFITIDDSKRDRPVIMSPRNETME 1083
Query: 241 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 300
ADPGS IQLICNVTGQF+DLVYWKWNGSEIEW+DP LAEDYQF+EHPS KRKYTLITTLN
Sbjct: 1084ADPGSTIQLICNVTGQFTDLVYWKWNGSEIEWDDPILAEDYQFLEHPSAKRKYTLITTLN 1263
Query: 301 ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 360
+SEVKSQFYRYPFIC VKNT+I E+AHV+L+YPVPDFKNYLIGGF I TAT V C CIYK
Sbjct: 1264VSEVKSQFYRYPFICFVKNTHILETAHVRLVYPVPDFKNYLIGGFAIFTATAVFCACIYK 1443
Query: 361 VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 420
VFKVDIVLWYRDSCS FLP KASDG+TYDAY+LYPKT GEGSF+ LDTFVFKLLPEVLEG
Sbjct: 1444VFKVDIVLWYRDSCSDFLPRKASDGRTYDAYVLYPKTYGEGSFAYLDTFVFKLLPEVLEG 1623
Query: 421 QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 480
QFGYKLFI GRDDYVGEDTIEVTNENVK+SRRLIIILVRDMG FS LGQSSEEQIAIY+A
Sbjct: 1624QFGYKLFICGRDDYVGEDTIEVTNENVKRSRRLIIILVRDMGSFSCLGQSSEEQIAIYDA 1803
Query: 481 LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 540
LI+EGIKI+LLELEKIQDYEKMP+SIQFIKQKHG ICWSGDF+ERPQSAKTRFWKNLRYQ
Sbjct: 1804LIREGIKIILLELEKIQDYEKMPESIQFIKQKHGAICWSGDFKERPQSAKTRFWKNLRYQ 1983
Query: 541 MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 576
MPAQRRSPLSKH LLTLDPV DTKEKL A THLPLG
Sbjct: 1984MPAQRRSPLSKHHLLTLDPVLDTKEKLQAETHLPLG 2091
>ref|XM_002686.6| Homo sapiens interleukin 1 receptor, type I (IL1R1), mRNA
Length = 5177
Score = 826 bits (2133), Expect = 0.0
Identities = 394/576 (68%), Positives = 472/576 (81%), Gaps = 1/576 (0%)
Frame = +2
Query: 2 ENMKVLLGLICLMVPLLS-LEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
+NMKVLL LIC + L+S LE D C E +I+L S NEID+R CPL PN+ H TI W
Sbjct: 347 KNMKVLLRLICFIALLISSLEADKCKEREEKIILVSSANEIDVRPCPLNPNE-HKGTITW 523
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
YK+DSKTP+S ++ SRIHQ E LWFVPAKVEDSG+YYC+VRNS+YCL+ K++ +EN+
Sbjct: 524 YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENE 703
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 180
P LCY+ QA F Q+L +AGDG LVCPY+ +FK+ENNELP++QWYK+CKPLLLDN+ F GV
Sbjct: 704 PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV 883
Query: 181 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 240
KD+L+V NVAE+HRG+Y C SYT+ GKQYP+TRVI+FIT++ENK RPVI+SP NET+E
Sbjct: 884 KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETME 1063
Query: 241 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 300
D GS IQLICNVTGQ SD+ YWKWNGS I+ +DP L EDY VE+P+ KR+ TLIT LN
Sbjct: 1064VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN 1243
Query: 301 ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 360
ISE++S+FY++PF C KNT+ ++A++QLIYPV +F+ ++IG + LT IVC V IYK
Sbjct: 1244ISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPVTNFQKHMIGICVTLTVIIVCSVFIYK 1423
Query: 361 VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 420
+FK+DIVLWYRDSC FLP KASDGKTYDAYILYPKT+GEGS SD D FVFK+LPEVLE
Sbjct: 1424IFKIDIVLWYRDSCYDFLPIKASDGKTYDAYILYPKTVGEGSTSDCDIFVFKVLPEVLEK 1603
Query: 421 QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 480
Q GYKLFIYGRDDYVGED +EV NENVKKSRRLIIILVR+ GFSWLG SSEEQIA+YNA
Sbjct: 1604QCGYKLFIYGRDDYVGEDIVEVINENVKKSRRLIIILVRETSGFSWLGGSSEEQIAMYNA 1783
Query: 481 LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 540
L+Q+GIK+VLLELEKIQDYEKMP+SI+FIKQKHG I WSGDF + PQSAKTRFWKN+RY
Sbjct: 1784LVQDGIKVVLLELEKIQDYEKMPESIKFIKQKHGAIRWSGDFTQGPQSAKTRFWKNVRYH 1963
Query: 541 MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 576
MP QRRSP SKH+LL+ TKEKL H+PLG
Sbjct: 1964MPVQRRSPSSKHQLLS----PATKEKLQREAHVPLG 2059
>ref|NM_000877.1| Homo sapiens interleukin 1 receptor, type I (IL1R1), mRNA
Length = 4910
Score = 826 bits (2133), Expect = 0.0
Identities = 394/576 (68%), Positives = 472/576 (81%), Gaps = 1/576 (0%)
Frame = +2
Query: 2 ENMKVLLGLICLMVPLLS-LEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
+NMKVLL LIC + L+S LE D C E +I+L S NEID+R CPL PN+ H TI W
Sbjct: 77 KNMKVLLRLICFIALLISSLEADKCKEREEKIILVSSANEIDVRPCPLNPNE-HKGTITW 253
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
YK+DSKTP+S ++ SRIHQ E LWFVPAKVEDSG+YYC+VRNS+YCL+ K++ +EN+
Sbjct: 254 YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENE 433
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 180
P LCY+ QA F Q+L +AGDG LVCPY+ +FK+ENNELP++QWYK+CKPLLLDN+ F GV
Sbjct: 434 PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV 613
Query: 181 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 240
KD+L+V NVAE+HRG+Y C SYT+ GKQYP+TRVI+FIT++ENK RPVI+SP NET+E
Sbjct: 614 KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETME 793
Query: 241 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 300
D GS IQLICNVTGQ SD+ YWKWNGS I+ +DP L EDY VE+P+ KR+ TLIT LN
Sbjct: 794 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN 973
Query: 301 ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 360
ISE++S+FY++PF C KNT+ ++A++QLIYPV +F+ ++IG + LT IVC V IYK
Sbjct: 974 ISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPVTNFQKHMIGICVTLTVIIVCSVFIYK 1153
Query: 361 VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 420
+FK+DIVLWYRDSC FLP KASDGKTYDAYILYPKT+GEGS SD D FVFK+LPEVLE
Sbjct: 1154IFKIDIVLWYRDSCYDFLPIKASDGKTYDAYILYPKTVGEGSTSDCDIFVFKVLPEVLEK 1333
Query: 421 QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 480
Q GYKLFIYGRDDYVGED +EV NENVKKSRRLIIILVR+ GFSWLG SSEEQIA+YNA
Sbjct: 1334QCGYKLFIYGRDDYVGEDIVEVINENVKKSRRLIIILVRETSGFSWLGGSSEEQIAMYNA 1513
Query: 481 LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 540
L+Q+GIK+VLLELEKIQDYEKMP+SI+FIKQKHG I WSGDF + PQSAKTRFWKN+RY
Sbjct: 1514LVQDGIKVVLLELEKIQDYEKMPESIKFIKQKHGAIRWSGDFTQGPQSAKTRFWKNVRYH 1693
Query: 541 MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 576
MP QRRSP SKH+LL+ TKEKL H+PLG
Sbjct: 1694MPVQRRSPSSKHQLLS----PATKEKLQREAHVPLG 1789
>gb|M27492.1|HUMIL1RA Human interleukin 1 receptor mRNA, complete cds
Length = 4910
Score = 826 bits (2133), Expect = 0.0
Identities = 394/576 (68%), Positives = 472/576 (81%), Gaps = 1/576 (0%)
Frame = +2
Query: 2 ENMKVLLGLICLMVPLLS-LEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
+NMKVLL LIC + L+S LE D C E +I+L S NEID+R CPL PN+ H TI W
Sbjct: 77 KNMKVLLRLICFIALLISSLEADKCKEREEKIILVSSANEIDVRPCPLNPNE-HKGTITW 253
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
YK+DSKTP+S ++ SRIHQ E LWFVPAKVEDSG+YYC+VRNS+YCL+ K++ +EN+
Sbjct: 254 YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENE 433
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 180
P LCY+ QA F Q+L +AGDG LVCPY+ +FK+ENNELP++QWYK+CKPLLLDN+ F GV
Sbjct: 434 PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV 613
Query: 181 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 240
KD+L+V NVAE+HRG+Y C SYT+ GKQYP+TRVI+FIT++ENK RPVI+SP NET+E
Sbjct: 614 KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETME 793
Query: 241 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 300
D GS IQLICNVTGQ SD+ YWKWNGS I+ +DP L EDY VE+P+ KR+ TLIT LN
Sbjct: 794 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN 973
Query: 301 ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 360
ISE++S+FY++PF C KNT+ ++A++QLIYPV +F+ ++IG + LT IVC V IYK
Sbjct: 974 ISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPVTNFQKHMIGICVTLTVIIVCSVFIYK 1153
Query: 361 VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 420
+FK+DIVLWYRDSC FLP KASDGKTYDAYILYPKT+GEGS SD D FVFK+LPEVLE
Sbjct: 1154IFKIDIVLWYRDSCYDFLPIKASDGKTYDAYILYPKTVGEGSTSDCDIFVFKVLPEVLEK 1333
Query: 421 QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 480
Q GYKLFIYGRDDYVGED +EV NENVKKSRRLIIILVR+ GFSWLG SSEEQIA+YNA
Sbjct: 1334QCGYKLFIYGRDDYVGEDIVEVINENVKKSRRLIIILVRETSGFSWLGGSSEEQIAMYNA 1513
Query: 481 LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 540
L+Q+GIK+VLLELEKIQDYEKMP+SI+FIKQKHG I WSGDF + PQSAKTRFWKN+RY
Sbjct: 1514LVQDGIKVVLLELEKIQDYEKMPESIKFIKQKHGAIRWSGDFTQGPQSAKTRFWKNVRYH 1693
Query: 541 MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 576
MP QRRSP SKH+LL+ TKEKL H+PLG
Sbjct: 1694MPVQRRSPSSKHQLLS----PATKEKLQREAHVPLG 1789
>emb|X16896.1|HSIL1RFT Human mRNA for interleukin-1 receptor (fibroblast type)
Length = 2156
Score = 826 bits (2133), Expect = 0.0
Identities = 394/576 (68%), Positives = 472/576 (81%), Gaps = 1/576 (0%)
Frame = +3
Query: 2 ENMKVLLGLICLMVPLLS-LEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
+NMKVLL LIC + L+S LE D C E +I+L S NEID+R CPL PN+ H TI W
Sbjct: 303 KNMKVLLRLICFIALLISSLEADKCKEREEKIILVSSANEIDVRPCPLNPNE-HKGTITW 479
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
YK+DSKTP+S ++ SRIHQ E LWFVPAKVEDSG+YYC+VRNS+YCL+ K++ +EN+
Sbjct: 480 YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENE 659
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 180
P LCY+ QA F Q+L +AGDG LVCPY+ +FK+ENNELP++QWYK+CKPLLLDN+ F GV
Sbjct: 660 PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV 839
Query: 181 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 240
KD+L+V NVAE+HRG+Y C SYT+ GKQYP+TRVI+FIT++ENK RPVI+SP NET+E
Sbjct: 840 KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETME 1019
Query: 241 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 300
D GS IQLICNVTGQ SD+ YWKWNGS I+ +DP L EDY VE+P+ KR+ TLIT LN
Sbjct: 1020VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN 1199
Query: 301 ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 360
ISE++S+FY++PF C KNT+ ++A++QLIYPV +F+ ++IG + LT IVC V IYK
Sbjct: 1200ISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPVTNFQKHMIGICVTLTVIIVCSVFIYK 1379
Query: 361 VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 420
+FK+DIVLWYRDSC FLP KASDGKTYDAYILYPKT+GEGS SD D FVFK+LPEVLE
Sbjct: 1380IFKIDIVLWYRDSCYDFLPIKASDGKTYDAYILYPKTVGEGSTSDCDIFVFKVLPEVLEK 1559
Query: 421 QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 480
Q GYKLFIYGRDDYVGED +EV NENVKKSRRLIIILVR+ GFSWLG SSEEQIA+YNA
Sbjct: 1560QCGYKLFIYGRDDYVGEDIVEVINENVKKSRRLIIILVRETSGFSWLGGSSEEQIAMYNA 1739
Query: 481 LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 540
L+Q+GIK+VLLELEKIQDYEKMP+SI+FIKQKHG I WSGDF + PQSAKTRFWKN+RY
Sbjct: 1740LVQDGIKVVLLELEKIQDYEKMPESIKFIKQKHGAIRWSGDFTQGPQSAKTRFWKNVRYH 1919
Query: 541 MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 576
MP QRRSP SKH+LL+ TKEKL H+PLG
Sbjct: 1920MPVQRRSPSSKHQLLS----PATKEKLQREAHVPLG 2015
>dbj|AB020338.1|AB020338 Equus caballus mRNA for interleukin-1 receptor type I, complete cds
Length = 3090
Score = 777 bits (2006), Expect = 0.0
Identities = 373/576 (64%), Positives = 456/576 (78%), Gaps = 1/576 (0%)
Frame = +1
Query: 2 ENMKVLLGLICLMVPLLS-LEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
ENMKVL L+C + L+S LE D C E IVL S EID+R CPL PN+ +G TIIW
Sbjct: 391 ENMKVLPRLVCFIALLISSLEADKCEERGEPIVLVSSAYEIDVRSCPLNPNESNG-TIIW 567
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
YKNDS+TP+S +RDSRIHQ + LWFVPAK+EDSG+YYC VRNSTYCLK K+T ++++
Sbjct: 568 YKNDSETPVSMERDSRIHQYKDKLWFVPAKIEDSGHYYCAVRNSTYCLKVKITARFVQHE 747
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 180
P LCY+ QA F Q+L + DG LVCPY+ F+DENNELP++QWYK+C+PLLLDN++F G
Sbjct: 748 PDLCYNAQAIFTQKLPLGEDGLLVCPYLEVFRDENNELPKIQWYKDCQPLLLDNINFIGK 927
Query: 181 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIE 240
DKL+V NV E H+G Y C +SYT GKQYP+TRVI IT+DE + +P+I+SP NET+E
Sbjct: 928 TDKLIVANVTEAHKGHYTCHISYTHLGKQYPITRVIGLITLDEIRPTKPLIVSPVNETME 1107
Query: 241 ADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLN 300
D GS +QLICNVTG F+D VYW+WNGS I+ +DP L E+Y+ VE+PS KR++TLIT LN
Sbjct: 1108VDLGSQVQLICNVTGMFTDFVYWRWNGSLIDDSDPVLVEEYKPVENPSLKRRHTLITVLN 1287
Query: 301 ISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYK 360
IS V+S+FY YPF C+ KN+ +A+VQL PVPDF+ ++IG F++LT I C V IYK
Sbjct: 1288ISAVESRFYLYPFTCLAKNSYGRSAAYVQLRQPVPDFQKHVIGIFVLLTVAITCSVFIYK 1467
Query: 361 VFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG 420
+FKVD+VLWYRDSC F KASDGKTYDAYILYPK LGEGS S+ D FVFK+LPEVLE
Sbjct: 1468LFKVDLVLWYRDSCYDFRSPKASDGKTYDAYILYPKILGEGSTSNSDIFVFKVLPEVLEK 1647
Query: 421 QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNA 480
Q GYKLFIYGRDDYVGED +EVTNEN+KKSRRLIIILVR+ G SWLG SSEEQIA+YNA
Sbjct: 1648QCGYKLFIYGRDDYVGEDIVEVTNENIKKSRRLIIILVRETSGLSWLGSSSEEQIAMYNA 1827
Query: 481 LIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQ 540
L+Q+GIKI+LLELEKIQDYEKMP+SI+FIK+KHG + WSGD ++ PQSAK RFWKN+RY+
Sbjct: 1828LVQDGIKIILLELEKIQDYEKMPESIKFIKRKHGALRWSGDSRKGPQSAKARFWKNVRYR 2007
Query: 541 MPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG 576
MP QR+ P SK +LL+ D+KEKL H+PLG
Sbjct: 2008MPVQRQLPSSKCQLLSPATRPDSKEKLQGEVHVPLG 2115
>ref|NM_013123.1| Rattus norvegicus Interleukin 1 receptor, type I (Il1r1), mRNA
Length = 1048
Score = 509 bits (1310), Expect = e-142
Identities = 231/279 (82%), Positives = 261/279 (92%)
Frame = +1
Query: 4 MKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKN 63
MKVLLG ICL+VPLLSLE D CTEYPN+++ F SVNEIDIR CPLTPN+MHG TIIWYKN
Sbjct: 1 MKVLLGFICLIVPLLSLETDKCTEYPNEVISFSSVNEIDIRSCPLTPNEMHGGTIIWYKN 180
Query: 64 DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGL 123
DSKTPISAD+DSRIHQQNEHLWFVPAK+EDSGYYYCI+RNSTYCLKTK+T++VLENDPGL
Sbjct: 181 DSKTPISADKDSRIHQQNEHLWFVPAKMEDSGYYYCIMRNSTYCLKTKITMSVLENDPGL 360
Query: 124 CYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDK 183
CY+TQA+F QRLH+AGDGSLVCPY+ +FKDENNELP+VQWYKNCKPL LD+ +FFG K+K
Sbjct: 361 CYNTQASFIQRLHVAGDGSLVCPYLDFFKDENNELPKVQWYKNCKPLPLDDGNFFGFKNK 540
Query: 184 LLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADP 243
L+V NVAEEHRG+Y CR SYT++GKQYPVTRVI FITID++KRDRPVI+SPRNET+EADP
Sbjct: 541 LMVMNVAEEHRGNYTCRTSYTYQGKQYPVTRVITFITIDDSKRDRPVIMSPRNETMEADP 720
Query: 244 GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQ 282
GS IQLICNVTGQF+DLVYWKWNGSEIEW+DP LAEDYQ
Sbjct: 721 GSTIQLICNVTGQFTDLVYWKWNGSEIEWDDPILAEDYQ 837
>gb|U14010.1|RNU14010 Rattus norvegicus soluble IL-1 receptor type I mRNA, complete cds
Length = 1048
Score = 509 bits (1310), Expect = e-142
Identities = 231/279 (82%), Positives = 261/279 (92%)
Frame = +1
Query: 4 MKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKN 63
MKVLLG ICL+VPLLSLE D CTEYPN+++ F SVNEIDIR CPLTPN+MHG TIIWYKN
Sbjct: 1 MKVLLGFICLIVPLLSLETDKCTEYPNEVISFSSVNEIDIRSCPLTPNEMHGGTIIWYKN 180
Query: 64 DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGL 123
DSKTPISAD+DSRIHQQNEHLWFVPAK+EDSGYYYCI+RNSTYCLKTK+T++VLENDPGL
Sbjct: 181 DSKTPISADKDSRIHQQNEHLWFVPAKMEDSGYYYCIMRNSTYCLKTKITMSVLENDPGL 360
Query: 124 CYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDK 183
CY+TQA+F QRLH+AGDGSLVCPY+ +FKDENNELP+VQWYKNCKPL LD+ +FFG K+K
Sbjct: 361 CYNTQASFIQRLHVAGDGSLVCPYLDFFKDENNELPKVQWYKNCKPLPLDDGNFFGFKNK 540
Query: 184 LLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADP 243
L+V NVAEEHRG+Y CR SYT++GKQYPVTRVI FITID++KRDRPVI+SPRNET+EADP
Sbjct: 541 LMVMNVAEEHRGNYTCRTSYTYQGKQYPVTRVITFITIDDSKRDRPVIMSPRNETMEADP 720
Query: 244 GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQ 282
GS IQLICNVTGQF+DLVYWKWNGSEIEW+DP LAEDYQ
Sbjct: 721 GSTIQLICNVTGQFTDLVYWKWNGSEIEWDDPILAEDYQ 837
>gb|M81846.1|CHKIL1REC Gallus gallus IL-1 receptor I mRNA, complete cds
Length = 1860
Score = 437 bits (1123), Expect = e-120
Identities = 238/568 (41%), Positives = 340/568 (58%), Gaps = 5/568 (0%)
Frame = +1
Query: 1 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCP-LTPNKMHGD-TI 58
M + +L+G + L++PL S E V Y F+ V E CP +T +H D +
Sbjct: 184 MTSTFLLIGHLILLIPLFSAEECVICNY------FVLVGEPTAISCPVITLPMLHSDYNL 345
Query: 59 IWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLE 118
WY+N S PI+ +R +RIHQ+ LWF+PA +EDSG Y C VR+ + + + V +
Sbjct: 346 TWYRNGSNMPITTERRARIHQRKGLLWFIPAALEDSGLYECEVRSLNRSKQKIINLKVFK 525
Query: 119 NDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFF 178
ND GLC++ + + Q + A G ++CP + FKDE+N PE+ WYK CK L++
Sbjct: 526 NDNGLCFNGEMKYDQIVKSANAGKIICPDLENFKDEDNINPEIHWYKECKSGFLEDKRLV 705
Query: 179 GVKDK--LLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRN 236
+ + +L+ NV + +G+Y CRM YT+ GKQY V+R + + + RP + P N
Sbjct: 706 LAEGENAILILNVTIQDKGNYTCRMVYTYMGKQYNVSRTMNLEVKESPLKMRPEFIYPNN 885
Query: 237 ETIEADPGSMIQLICNVT-GQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTL 295
TIE + GS + + CNV+ G + L YW+ N +++ D E QF E
Sbjct: 886 NTIEVELGSHVVMECNVSSGVYGLLPYWQVNDEDVDSFDSTYRE--QFYEEGMPHGIAVS 1059
Query: 296 ITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCC 355
T NISEVK + Y Y F C + +++++L +PV + + YLIGG I L +
Sbjct: 1060GTKFNISEVKLKDYAYKFFCHFIYDSQEFTSYIKLEHPVQNIRGYLIGGGISLIFLLFLI 1239
Query: 356 VCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLP 415
+ +YK+FK+DIVLWYR SC L K SDGK YDAY+LYPK +S D F K+LP
Sbjct: 1240LIVYKIFKIDIVLWYRSSCHPLLGKKVSDGKIYDAYVLYPKNRESCLYSS-DIFALKILP 1416
Query: 416 EVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQI 475
EVLE Q GY LFI+GR+D GE I+VT+E + +SRR+IIILV + + L +SE+ +
Sbjct: 1417EVLERQCGYNLFIFGRNDLAGEAVIDVTDEKIHQSRRVIIILVPEPSCYGILEDASEKHL 1596
Query: 476 AIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWK 535
A+YNALIQ+GIKI+L+ELEKI+DY MP+SI+++KQK+G I W+GDF ER SA TRFWK
Sbjct: 1597AVYNALIQDGIKIILIELEKIEDYANMPESIKYVKQKYGAIRWTGDFSERSHSASTRFWK 1776
Query: 536 NLRYQMPAQRRSPLSKHRLLTLDPVRDT 563
+RY MP+++ S L + D V T
Sbjct: 1777KVRYHMPSRKHGSSSGFHLSS*DWVLPT 1860
>ref|XM_002685.2| Homo sapiens interleukin 1 receptor-like 2 (IL1RL2), mRNA
Length = 1964
Score = 356 bits (914), Expect = 3e-96
Identities = 222/560 (39%), Positives = 310/560 (54%), Gaps = 18/560 (3%)
Frame = +1
Query: 18 LSLEIDVCTEY--PNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDS 75
LS+ D C + N+I LS ++ C P ++ WYKN SK P+S S
Sbjct: 169 LSVTADGCKDIFMKNEI---LSASQPFAFNCTFPPITSGEVSVTWYKNSSKIPVSKIIQS 339
Query: 76 RIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEN-----DPGLCYSTQAT 130
RIHQ + F+P + DSG Y C+++ C + V +TV E G +
Sbjct: 340 RIHQDETWILFLPMEWGDSGVYQCVIKGRDSCHRIHVNLTVFEKHWCDTSIGGLPNLSDE 519
Query: 131 FPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVA 190
+ Q LH+ D SL C ++ + K + L ++WYK+C + + F ++ +LLV NV+
Sbjct: 520 YKQILHLGKDDSLTC-HLHFPK--SCVLGPIKWYKDCNEIKGER--FTVLETRLLVSNVS 684
Query: 191 EEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKR-----DRPVILSPRNETIEADPGS 245
E RG+Y C+ T GKQY V+ IT+ +R P I+ P+N +IE G+
Sbjct: 685 AEDRGNYACQAILTHSGKQY---EVLNGITVSITERAGYGGSVPKIIYPKNHSIEVQLGT 855
Query: 246 MIQLICNVTG--QFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTK---RKYTLITT-L 299
+ + CNVT ++L W+ N + + D + E + E T R++ L T +
Sbjct: 856 TLIVDCNVTDTKDNTNLRCWRVNNTLV---DDYYDESKRIREGVETHVSFREHNLYTVNI 1026
Query: 300 NISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIY 359
EVK + Y PF+C +A++ L P PDF+ YLIGG I L A V V IY
Sbjct: 1027TFLEVKMEDYGLPFMCHAG----VSTAYIILQLPAPDFRAYLIGGLIALVAVAVSVVYIY 1194
Query: 360 KVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE 419
+FK+DIVLWYR + DGK YDAY+LYPK E +D V +LPEVLE
Sbjct: 1195NIFKIDIVLWYRSAFHS--TETIVDGKLYDAYVLYPKPHKESQRHAVDALVLNILPEVLE 1368
Query: 420 GQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYN 479
Q GYKLFI+GRD++ G+ V +ENVK RRLI+I+V + GF L SEEQIA+Y+
Sbjct: 1369RQCGYKLFIFGRDEFPGQAVANVIDENVKLCRRLIVIVVPESLGFGLLKNLSEEQIAVYS 1548
Query: 480 ALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRY 539
ALIQ+G+K++L+ELEKI+DY MP+SIQ+IKQKHG I W GDF E+ Q KT+FWK +RY
Sbjct: 1549ALIQDGMKVILIELEKIEDYTVMPESIQYIKQKHGAIRWHGDFTEQSQCMKTKFWKTVRY 1728
Query: 540 QMPAQRRSPLSKHRLLTLDP 559
MP +R P +LL P
Sbjct: 1729HMPPRRCRPFPPVQLLQHTP 1788
>gb|AF284434.1|AF284434 Homo sapiens IL-1Rrp2 mRNA, complete cds
Length = 1972
Score = 356 bits (913), Expect = 4e-96
Identities = 222/560 (39%), Positives = 310/560 (54%), Gaps = 18/560 (3%)
Frame = +3
Query: 18 LSLEIDVCTEY--PNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDS 75
LS+ D C + N+I LS ++ C P ++ WYKN SK P+S S
Sbjct: 177 LSVTADGCKDIFMKNEI---LSASQPFAFNCTFPPITSGEVSVTWYKNSSKIPVSKIIQS 347
Query: 76 RIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEN-----DPGLCYSTQAT 130
RIHQ + F+P + DSG Y C+++ C + V +TV E G +
Sbjct: 348 RIHQDETWILFLPMEWGDSGVYQCVIKGRDSCHRIHVNLTVFEKHWCDTSIGGLPNLSDE 527
Query: 131 FPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVA 190
+ Q LH+ D SL C ++ + K + L ++WYK+C + + F ++ +LLV NV+
Sbjct: 528 YKQILHLGKDDSLTC-HLHFPK--SCVLGPIKWYKDCNEIKGER--FTVLETRLLVSNVS 692
Query: 191 EEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKR-----DRPVILSPRNETIEADPGS 245
E RG+Y C+ T GKQY V+ IT+ +R P I+ P+N +IE G+
Sbjct: 693 AEDRGNYACQAILTHSGKQY---EVLNGITVSITERAGYGGSVPKIIYPKNHSIEVQLGT 863
Query: 246 MIQLICNVTG--QFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTK---RKYTLITT-L 299
+ + CNVT ++L W+ N + + D + E + E T R++ L T +
Sbjct: 864 TLIVDCNVTDTKDNTNLRCWRVNNTLV---DDYYDESKRIREGVETHVSFREHNLYTVNI 1034
Query: 300 NISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIY 359
EVK + Y PF+C +A++ L P PDF+ YLIGG I L A V V IY
Sbjct: 1035TFLEVKMEDYGLPFMCHAG----VSTAYIILQLPAPDFRAYLIGGLIALVAVAVSVVYIY 1202
Query: 360 KVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE 419
+FK+DIVLWYR + DGK YDAY+LYPK E +D V +LPEVLE
Sbjct: 1203NIFKIDIVLWYRSAFHS--TETIVDGKLYDAYVLYPKPHKESQRHAVDALVLNILPEVLE 1376
Query: 420 GQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYN 479
Q GYKLFI+GRD++ G+ V +ENVK RRLI+I+V + GF L SEEQIA+Y+
Sbjct: 1377RQCGYKLFIFGRDEFPGQAVANVIDENVKLCRRLIVIVVPESLGFGLLKNLSEEQIAVYS 1556
Query: 480 ALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRY 539
ALIQ+G+K++L+ELEKI+DY MP+SIQ+IKQKHG I W GDF E+ Q KT+FWK +RY
Sbjct: 1557ALIQDGMKVILVELEKIEDYTVMPESIQYIKQKHGAIRWHGDFTEQSQCMKTKFWKTVRY 1736
Query: 540 QMPAQRRSPLSKHRLLTLDP 559
MP +R P +LL P
Sbjct: 1737HMPPRRCRPFPPVQLLQHTP 1796
>gb|AF284433.1|AF284433 Mus musculus IL-1Rrp2 mRNA, complete cds
Length = 1955
Score = 354 bits (909), Expect = 1e-95
Identities = 214/542 (39%), Positives = 302/542 (55%), Gaps = 14/542 (2%)
Frame = +1
Query: 46 CPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNST 105
C P + WYK SK+P+S +R R+HQ + F+P +EDSG Y C++RN+
Sbjct: 334 CTYPPETNGAVNLTWYKTPSKSPVSNNRHLRVHQDQTWILFLPLTLEDSGIYQCVIRNAH 513
Query: 106 YCLKTKVTVTVLEND------PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP 159
C + V +TVL+N G ++ + Q L I GSL C YF E+ L
Sbjct: 514 NCYQIAVNLTVLKNHWCDSSMEGSPVNSPDVYQQILPIGKSGSLNCHL--YFP-ESCALD 684
Query: 160 EVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFI 219
++WYK C+ + + KLLV NVA E G Y C T G+ + + I
Sbjct: 685 SIKWYKGCEEIKAGK-KYSPSGAKLLVNNVAVEDGGSYACSARLTHLGRHFTIRNYIAVN 861
Query: 220 TID-ENKRDRPVILSPRNETIEADPGSMIQLICNVTG--QFSDLVYWKWNGSEIEWNDPF 276
T + E R P I P+N +IE GS + + CN+T + ++L W+ N + + D +
Sbjct: 862 TKEVEYGRRIPNITYPKNNSIEVPLGSTLIVNCNITDTKENTNLRCWRVNNTLV---DDY 1032
Query: 277 LAEDYQFVEHPSTK--RKYTLITTLNIS--EVKSQFYRYPFICVVKNTNIFESAHVQLIY 332
+ + E T + + T+NI+ +VK + Y PF C +A++ LIY
Sbjct: 1033YKDSKRIQEGIETNVSLRDQIRYTVNITFLKVKMEDYGRPFTCHAG----VSAAYIILIY 1200
Query: 333 PVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDG-KTYDAY 391
PVPDF+ YL+GG + +V + IY FK+DI+LWYR S F ++A D K YDAY
Sbjct: 1201PVPDFRAYLLGGLMAFLLLVVSVLFIYNSFKIDIMLWYR---SAFHTAQAPDDEKLYDAY 1371
Query: 392 ILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSR 451
+LYPK D+DT V K+LPEVLE Q GYKLFI+GRD++ G+ V +EN+K R
Sbjct: 1372VLYPKYPRGSQGHDVDTLVLKILPEVLEKQCGYKLFIFGRDEFPGQAVASVIDENIKLCR 1551
Query: 452 RLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQ 511
RL++ + + F +L SEEQIA+YNALIQ G+K++L+ELEK++DY MP+SIQ+I+Q
Sbjct: 1552RLMVFVAPESSSFGFLKNLSEEQIAVYNALIQHGMKVILIELEKVKDYSTMPESIQYIRQ 1731
Query: 512 KHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTLDPVRDTKEKLPAAT 571
KHG I W GDF E+ Q AKT+FWK +RY MP +R S +LL P K AAT
Sbjct: 1732KHGAIQWDGDFTEQSQCAKTKFWKKVRYHMPPRRYPASSPVQLLGHIPCNCKAGKCNAAT 1911
Query: 572 HL 573
L
Sbjct: 1912GL 1917
>ref|NM_003854.1| Homo sapiens interleukin 1 receptor-like 2 (IL1RL2), mRNA
Length = 1971
Score = 354 bits (908), Expect = 1e-95
Identities = 219/549 (39%), Positives = 306/549 (54%), Gaps = 18/549 (3%)
Frame = +3
Query: 18 LSLEIDVCTEY--PNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDS 75
LS+ D C + N+I LS ++ C P ++ WYKN SK P+S S
Sbjct: 177 LSVTADGCKDIFMKNEI---LSASQPFAFNCTFPPITSGEVSVTWYKNSSKIPVSKIIQS 347
Query: 76 RIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEN-----DPGLCYSTQAT 130
RIHQ + F+P + DSG Y C+++ C + V +TV E G +
Sbjct: 348 RIHQDETWILFLPMEWGDSGVYQCVIKGRDSCHRIHVNLTVFEKHWCDTSIGGLPNLSDE 527
Query: 131 FPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVA 190
+ Q LH+ D SL C ++ + K + L ++WYK+C + + F ++ +LLV NV+
Sbjct: 528 YKQILHLGKDDSLTC-HLHFPK--SCVLGPIKWYKDCNEIKGER--FTVLETRLLVSNVS 692
Query: 191 EEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKR-----DRPVILSPRNETIEADPGS 245
E RG+Y C+ T GKQY V+ IT+ +R P I+ P+N +IE G+
Sbjct: 693 AEDRGNYACQAILTHSGKQY---EVLNGITVSITERAGYGGSVPKIIYPKNHSIEVQLGT 863
Query: 246 MIQLICNVTG--QFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTK---RKYTLITT-L 299
+ + CNVT ++L W+ N + + D + E + E T R++ L T +
Sbjct: 864 TLIVDCNVTDTKDNTNLRCWRVNNTLV---DDYYDESKRIREGVETHVSFREHNLYTVNI 1034
Query: 300 NISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIY 359
EVK + Y PF+C +A++ L P PDF+ YLIGG I L A V V IY
Sbjct: 1035TFLEVKMEDYGLPFMCHAG----VSTAYIILQLPAPDFRAYLIGGLIALVAVAVSVVYIY 1202
Query: 360 KVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE 419
+FK+DIVLWYR + DGK YDAY+LYPK E +D V +LPEVLE
Sbjct: 1203NIFKIDIVLWYRSAFHS--TETIVDGKLYDAYVLYPKPHKESQRHAVDALVLNILPEVLE 1376
Query: 420 GQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYN 479
Q GYKLFI+GRD++ G+ V +ENVK RRLI+I+V + GF L SEEQIA+Y+
Sbjct: 1377RQCGYKLFIFGRDEFPGQAVANVIDENVKLCRRLIVIVVPESLGFGLLKNLSEEQIAVYS 1556
Query: 480 ALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRY 539
ALIQ+G+K++L+ELEKI+DY MP+SIQ+IKQKHG I W GDF E+ Q KT+FWK +RY
Sbjct: 1557ALIQDGMKVILIELEKIEDYTVMPESIQYIKQKHGAIRWHGDFTEQSQCMKTKFWKTVRY 1736
Query: 540 QMPAQRRSP 548
MP +R P
Sbjct: 1737HMPPRRCRP 1763
>gb|U49065.1|HSU49065 Human interleukin-1 receptor-related protein mRNA, complete cds
Length = 1971
Score = 354 bits (908), Expect = 1e-95
Identities = 219/549 (39%), Positives = 306/549 (54%), Gaps = 18/549 (3%)
Frame = +3
Query: 18 LSLEIDVCTEY--PNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDS 75
LS+ D C + N+I LS ++ C P ++ WYKN SK P+S S
Sbjct: 177 LSVTADGCKDIFMKNEI---LSASQPFAFNCTFPPITSGEVSVTWYKNSSKIPVSKIIQS 347
Query: 76 RIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEN-----DPGLCYSTQAT 130
RIHQ + F+P + DSG Y C+++ C + V +TV E G +
Sbjct: 348 RIHQDETWILFLPMEWGDSGVYQCVIKGRDSCHRIHVNLTVFEKHWCDTSIGGLPNLSDE 527
Query: 131 FPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVA 190
+ Q LH+ D SL C ++ + K + L ++WYK+C + + F ++ +LLV NV+
Sbjct: 528 YKQILHLGKDDSLTC-HLHFPK--SCVLGPIKWYKDCNEIKGER--FTVLETRLLVSNVS 692
Query: 191 EEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKR-----DRPVILSPRNETIEADPGS 245
E RG+Y C+ T GKQY V+ IT+ +R P I+ P+N +IE G+
Sbjct: 693 AEDRGNYACQAILTHSGKQY---EVLNGITVSITERAGYGGSVPKIIYPKNHSIEVQLGT 863
Query: 246 MIQLICNVTG--QFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTK---RKYTLITT-L 299
+ + CNVT ++L W+ N + + D + E + E T R++ L T +
Sbjct: 864 TLIVDCNVTDTKDNTNLRCWRVNNTLV---DDYYDESKRIREGVETHVSFREHNLYTVNI 1034
Query: 300 NISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIY 359
EVK + Y PF+C +A++ L P PDF+ YLIGG I L A V V IY
Sbjct: 1035TFLEVKMEDYGLPFMCHAG----VSTAYIILQLPAPDFRAYLIGGLIALVAVAVSVVYIY 1202
Query: 360 KVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE 419
+FK+DIVLWYR + DGK YDAY+LYPK E +D V +LPEVLE
Sbjct: 1203NIFKIDIVLWYRSAFHS--TETIVDGKLYDAYVLYPKPHKESQRHAVDALVLNILPEVLE 1376
Query: 420 GQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYN 479
Q GYKLFI+GRD++ G+ V +ENVK RRLI+I+V + GF L SEEQIA+Y+
Sbjct: 1377RQCGYKLFIFGRDEFPGQAVANVIDENVKLCRRLIVIVVPESLGFGLLKNLSEEQIAVYS 1556
Query: 480 ALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRY 539
ALIQ+G+K++L+ELEKI+DY MP+SIQ+IKQKHG I W GDF E+ Q KT+FWK +RY
Sbjct: 1557ALIQDGMKVILIELEKIEDYTVMPESIQYIKQKHGAIRWHGDFTEQSQCMKTKFWKTVRY 1736
Query: 540 QMPAQRRSP 548
MP +R P
Sbjct: 1737HMPPRRCRP 1763
>gb|U49066.1|RNU49066 Rattus norvegicus interleukin-1 receptor-related protein mRNA,
complete cds
Length = 2044
Score = 342 bits (878), Expect = 4e-92
Identities = 198/513 (38%), Positives = 290/513 (55%), Gaps = 13/513 (2%)
Frame = +2
Query: 46 CPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNST 105
C P + W++ SK+PIS +R RIHQ + F+P +EDSG Y C+++++
Sbjct: 218 CTYPPVTNGAVNLTWHRTPSKSPISINRHVRIHQDQSWILFLPLALEDSGIYQCVIKDAH 397
Query: 106 YCLKTKVTVTVLE------NDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP 159
C + + +TV ++ ++ + Q L I GSL C YF E+ L
Sbjct: 398 SCYRIAINLTVFRKHWCDSSNEESSINSSDEYQQWLPIGKSGSLTCHL--YFP-ESCVLD 568
Query: 160 EVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFI 219
++WYK C+ + + F KLLV N+ E G Y C T G+ + V I
Sbjct: 569 SIKWYKGCEEIKVSK-KFCPTGTKLLVNNIDVEDSGSYACSARLTHLGRIFTVRNYIAVN 745
Query: 220 TIDENKRDR-PVILSPRNETIEADPGSMIQLICNVTG--QFSDLVYWKWNGSEIE--WND 274
T + R P I P+N +IE GS + + CN+T + ++L W+ N + ++ +ND
Sbjct: 746 TKEVGSGGRIPNITYPKNNSIEVQLGSTLIVDCNITDTKENTNLRCWRVNNTLVDDYYND 925
Query: 275 PFLAEDYQFVEHPSTKRKYTLITT-LNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYP 333
+ +E + R + L T + EVK + Y +PF C +A++ L P
Sbjct: 926 --FKRIQEGIETNLSLRNHILYTVNITFLEVKMEDYGHPFTCHAA----VSAAYIILKRP 1087
Query: 334 VPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDG-KTYDAYI 392
PDF+ YLIGG + V + IY FKVDIVLWYR S F ++A D K YDAY+
Sbjct: 1088APDFRAYLIGGLMAFLLLAVSILYIYNTFKVDIVLWYR---STFHTAQAPDDEKLYDAYV 1258
Query: 393 LYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRR 452
LYPK E D+DT V K+LPEVLE Q GYKLFI+GRD++ G+ V +EN+K RR
Sbjct: 1259LYPKYPRESQGHDVDTLVLKILPEVLEKQCGYKLFIFGRDEFPGQAVASVIDENIKLCRR 1438
Query: 453 LIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQK 512
L++++ + FS+L +EEQIA+YNAL+Q+G+K++L+ELE+++DY MP+SIQ+I+QK
Sbjct: 1439LMVLVAPETSSFSFLKNLTEEQIAVYNALVQDGMKVILIELERVKDYSTMPESIQYIRQK 1618
Query: 513 HGVICWSGDFQERPQSAKTRFWKNLRYQMPAQR 545
HG I W GDF E+ Q AKT+FWK +RY MP +R
Sbjct: 1619HGAIQWDGDFTEQAQCAKTKFWKKVRYHMPPRR 1717
>gb|S70238.1|S70238 type I interleukin-1 receptor [rats, intestinal epithelial IEC-18
cells, ATCC 1589, mRNA Partial, 509 nt]
Length = 509
Score = 311 bits (796), Expect = 1e-82
Identities = 152/169 (89%), Positives = 161/169 (94%)
Frame = +3
Query: 365 DIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGY 424
DIVLWYRDSCS FLP KASDGKTYDAY+LYPKT GEGSF+ LDTFVFKLLPEVLEGQFGY
Sbjct: 3 DIVLWYRDSCSDFLPPKASDGKTYDAYVLYPKTYGEGSFAYLDTFVFKLLPEVLEGQFGY 182
Query: 425 KLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQE 484
KLFI GRDDYVGEDTIEVTNENVK+SRRLIIILVRDMG FS LGQSSEEQIAIY+ALI+E
Sbjct: 183 KLFICGRDDYVGEDTIEVTNENVKRSRRLIIILVRDMGSFSCLGQSSEEQIAIYDALIRE 362
Query: 485 GIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRF 533
GIKI+LLELE+IQDYEKMP+SIQFIKQKHG ICWSGDF+ERPQSAKTRF
Sbjct: 363 GIKIILLELEEIQDYEKMPESIQFIKQKHGAICWSGDFKERPQSAKTRF 509
>dbj|AB041738.2|AB041738 Gallus gallus mRNA for ST2L, complete cds
Length = 2971
Score = 246 bits (628), Expect = 4e-63
Identities = 163/523 (31%), Positives = 270/523 (51%), Gaps = 13/523 (2%)
Frame = +2
Query: 50 PNKMHGDTIIWYKNDSKTPISADRD-SRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCL 108
P+ + + W+ ++ I + + SR+ + LWF+P +EDSG Y C++
Sbjct: 203 PHSVLSAKVTWHHTGTRKRIPEEEEGSRVFSKGIFLWFLPTSLEDSGNYTCVINYPDGSK 382
Query: 109 KT-KVTVTVLENDPGLCYSTQATFPQRLHIAGD---GSLVCPYVSYFKDENNELPEVQWY 164
K K+ V V G C FP R+ A + G + CP ++ EN + +QWY
Sbjct: 383 KERKMNVQVHPYKQGTC------FPSRILYANETRKGKISCP--TFRNYENATI--IQWY 532
Query: 165 KNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDEN 224
K+C+P+ +F + + N+ +E G Y C+ +YT RG+ + V+ F++ ++
Sbjct: 533 KDCRPI--QGERYFMHDPYIFIENLNKEDDGYYTCQFTYTHRGRVFNVSATRIFVSEAKH 706
Query: 225 KRDRPVILSPRNETI-EADPGSMIQLICN----VTGQFSDLVYWKWNGSEIEWNDPF-LA 278
IL P++E + E + G+ L C + Q +V W N E+ D +
Sbjct: 707 SSLPVQILFPKDEDVLEVELGAAFSLKCQARLGIKKQPIAVVTWDVNKMPAEYADEEKIR 886
Query: 279 EDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFK 338
+++ + E ++Y TL IS ++ + F CV N V L
Sbjct: 887 QEFSYFE--GQHQEYYGEATLTISNIEHTDLQSSFSCVAMNEMGNTRTTVTLRLKKKSGP 1060
Query: 339 NYL-IGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKT 397
N L I GF++ ++ V +Y+ F+VDIVL YRD + S DGK YDAY++YP++
Sbjct: 1061NVLMIAGFLVFLMSVAVSVVLYQSFRVDIVLLYRDLFQAY--SVKDDGKIYDAYVIYPRS 1234
Query: 398 LG-EGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIII 456
E +F ++ FV++++P++LE + GY L IYGRD Y GED + ++KSRRLII+
Sbjct: 1235HSTEATF--VEYFVYQIMPDILENKCGYTLCIYGRDTYPGEDKANAIEKRIQKSRRLIIL 1408
Query: 457 LVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVI 516
L + + L ++ IA+YNALIQ K++LLE+EK+ YE + +S+++I ++ G +
Sbjct: 1409LTQQLINCQELNY--DQHIALYNALIQNDTKVILLEMEKMGSYENLQESLRYIIKQQGTV 1582
Query: 517 CWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTLDP 559
W PQS+ ++FWK++RY MP RS S + T+ P
Sbjct: 1583KWKEQHTVHPQSSNSKFWKHVRYHMPVTLRSSDSANAG*TVGP 1711
>gb|U04317.1|RNU04317 Rattus norvegicus Fit-1M (Fit-1) mRNA, complete cds
Length = 2065
Score = 220 bits (560), Expect = 3e-55
Identities = 155/527 (29%), Positives = 251/527 (47%), Gaps = 17/527 (3%)
Frame = +2
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP ++ + WY +++ I + +RI + L F+PAKVEDSG Y
Sbjct: 377 NEALIVRCPQRGGAIN--PVEWYYSNTNERIPTQKRNRIFVSRDRLKFLPAKVEDSGIYT 550
Query: 99 CIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNEL 158
C++R+ + VT+ + P + + + CP ++ + N
Sbjct: 551 CVIRSPESIKTGSLNVTIYKRPPNCKIPDYMMYSTVDGSDKNSKITCPTIALY----NWT 718
Query: 159 PEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQF 218
VQW+KNCK L F L + V+ GDY CR ++T G Y VT F
Sbjct: 719 APVQWFKNCKAL--QGPRFRAHMSYLFIDKVSHVDEGDYTCRFTHTENGTNYIVTATRSF 892
Query: 219 ITIDENKRDRPVILSP-RNETIEADPGSMIQLICNV---TGQFSDLVYWKWNGSEIEWND 274
++ PVI +P N T+E + G + C+ T V W+ N + I
Sbjct: 893 TVEEKGFSTFPVITNPPHNYTVEVEIGKTANIACSACFGTASQFVAVLWQINKTRIGSFG 1072
Query: 275 PFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPV 334
++ + S+ L + L I+ V + + + CV N + V+L
Sbjct: 1073KARIQEEKGPNKSSSNGMICLTSLLRITGVTDKDFSLKYDCVAMNHHGVIRHPVRLRRKQ 1252
Query: 335 P-DFKN--YLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAY 391
P D ++ Y++ G +L I V + KVF +++ L++RD + + +DGK YDAY
Sbjct: 1253PIDHQSTYYIVAGCSLLLMFINVLVIVLKVFWIEVALFWRDIMAPY--KTQNDGKLYDAY 1426
Query: 392 ILYPKTL-----GEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNEN 446
I+YP+ G GS ++ FV LP+VLE + GYKL IYGRD G+D V +
Sbjct: 1427IIYPRVFRGSAAGTGS---VEYFVHYTLPDVLENKCGYKLCIYGRDLLPGQDAATVVESS 1597
Query: 447 VKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEK----- 501
++ SRR + +L M + E++IA+++ALIQ K++L+E+E + + +
Sbjct: 1598IQNSRRQVFVLAPHMMHSKEF--AYEQEIALHSALIQNNSKVILIEMEPMGEASRLQLGD 1771
Query: 502 MPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSP 548
+ DS+Q + + G I W D QS ++FWK++RYQMP +R P
Sbjct: 1772LQDSLQHLVKMQGTIKWREDHVADKQSLSSKFWKHVRYQMPVPKRPP 1912
>dbj|D13695.1|MUSST2L Mus musculus mRNA for ST2L protein, complete cds
Length = 4989
Score = 212 bits (539), Expect = 9e-53
Identities = 154/531 (29%), Positives = 251/531 (47%), Gaps = 22/531 (4%)
Frame = +1
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + + WY +D+ I + +RI + L F+PA+VEDSG Y
Sbjct: 145 NEALIVRCPQRGRSTY--PVEWYYSDTNESIPTQKRNRIFVSRDRLKFLPARVEDSGIYA 318
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
C++R+ + VT+ + P L YST + I CP + +
Sbjct: 319 CVIRSPNLNKTGYLNVTIHKKPPSCNIPDYLMYSTVRGSDKNFKIT------CPTIDLY- 477
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N VQW+KNCK L F + L + NV + GDY C+ ++ G Y V
Sbjct: 478 ---NWTAPVQWFKNCKAL--QEPRFRAHRSYLFIDNVTHDDEGDYTCQFTHAENGTNYIV 642
Query: 213 TRVIQFITIDENKRDRPVILSPR-NETIEADPGSMIQLICNVT----GQFSDLVYWKWNG 267
T F ++ PVI +P N T+E + G + C+ F V W+ N
Sbjct: 643 TATRSFTVEEKGFSMFPVITNPPYNHTMEVEIGKPASIACSACFGKGSHFLADVLWQINK 822
Query: 268 SEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAH 327
+ + ++ + S+ L + L I+ V + + C+ N +
Sbjct: 823 TVVGNFGEARIQEEEGRNESSSNDMDCLTSVLRITGVTEKDLSLEYDCLALNLHGMIRHT 1002
Query: 328 VQLIYPVP-DFKN--YLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASD 384
++L P D ++ Y++ G +L I V + KVF +++ L++RD + + +D
Sbjct: 1003IRLRRKQPIDHRSIYYIVAGCSLLLMFINVLVIVLKVFWIEVALFWRDIVTPY--KTRND 1176
Query: 385 GKTYDAYILYPKTLGEGSFS---DLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIE 441
GK YDAYI+YP+ GS + ++ FV LP+VLE + GYKL IYGRD G+D
Sbjct: 1177GKLYDAYIIYPRVF-RGSAAGTHSVEYFVHHTLPDVLENKCGYKLCIYGRDLLPGQDAAT 1353
Query: 442 VTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEK 501
V +++ SRR + +L M + E++IA+++ALIQ K++L+E+E + + +
Sbjct: 1354VVESSIQNSRRQVFVLAPHMMHSKEF--AYEQEIALHSALIQNNSKVILIEMEPLGEASR 1527
Query: 502 -----MPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRS 547
+ DS+Q + + G I W D QS ++FWK++RYQMP R+
Sbjct: 1528LQVGDLQDSLQHLVKIQGTIKWREDHVADKQSLSSKFWKHVRYQMPVPERA 1680
>ref|NM_030688.1| Mus musculus interkeukin 1 receptor accessory protein-like 2
(Il1rapl2), mRNA
Length = 2518
Score = 209 bits (532), Expect = 6e-52
Identities = 152/523 (29%), Positives = 264/523 (50%), Gaps = 22/523 (4%)
Frame = +1
Query: 55 GDTIIWYKN--DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKV 112
G ++WY+N D + PI + R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +
Sbjct: 331 GLRLMWYRNKGDLEEPIIFS-EVRMSKEEDAIWFHSAEEQDSGFYTCVLRNSTYCMKVSM 507
Query: 113 TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
++TV EN+ GLCY+++ + ++ + + CP + FK + E P+V WYK CKP +
Sbjct: 508 SLTVAENESGLCYNSRIRYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMW 684
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI- 231
++ + LL++ V EE G+Y C + Y GK T ++ + +K +P+
Sbjct: 685 RSI-IIQKGNALLIQEVQEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFP 855
Query: 232 LSPRNETIEADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHP 287
+ + I+ G + + C +G+ ++YW IE + E +
Sbjct: 856 MENQPSVIDVQLGKPLNIPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKE 1035
Query: 288 STKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFII 347
K +T + S V++ Y C V+N N + A V L +K L GG
Sbjct: 1036HLGEKEVELTLIFDSVVEADLANY--TCHVENRNGRKHASVLLRKKDLIYKIELAGGLGA 1209
Query: 348 LTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPK----TLGEGSF 403
+ ++ + +YK + ++++L+YR G D K YDAY+ Y K TL +
Sbjct: 1210IFLLLILLLVVYKCYNIELMLFYRQRFGG--DETTDDNKEYDAYLSYTKVDQDTL-DCDN 1380
Query: 404 SDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRD--- 460
++ + F ++LP+VLE +GYKLFI RD IE V++SRRLII+L D
Sbjct: 1381TEEEQFALEILPDVLEKHYGYKLFIPERDLIPSGTYIEDLTRCVEQSRRLIIVLTPDYIL 1560
Query: 461 MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI------QDYEKMPDSIQFIKQKHG 514
G+S E + ++N L+ IK++L+E ++ Q+ E + +I+ +
Sbjct: 1561RRGWSIF----ELESRLHNMLVSGEIKVILIECTELKGKVNCQEVESLKHNIKLL----S 1716
Query: 515 VICWSGDFQERPQSAK--TRFWKNLRYQMPAQRRSPLSKHRLL 555
+I W G P+S+K ++FWK+L Y+MP +++ LS +L
Sbjct: 1717LIKWKG-----PKSSKLNSKFWKHLVYEMPIKKKEMLSHCHVL 1830
>gb|AF284437.1|AF284437 Mus musculus TIGIRR-1 mRNA, complete cds
Length = 2518
Score = 209 bits (532), Expect = 6e-52
Identities = 152/523 (29%), Positives = 264/523 (50%), Gaps = 22/523 (4%)
Frame = +1
Query: 55 GDTIIWYKN--DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKV 112
G ++WY+N D + PI + R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +
Sbjct: 331 GLRLMWYRNKGDLEEPIIFS-EVRMSKEEDAIWFHSAEEQDSGFYTCVLRNSTYCMKVSM 507
Query: 113 TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
++TV EN+ GLCY+++ + ++ + + CP + FK + E P+V WYK CKP +
Sbjct: 508 SLTVAENESGLCYNSRIRYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMW 684
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI- 231
++ + LL++ V EE G+Y C + Y GK T ++ + +K +P+
Sbjct: 685 RSI-IIQKGNALLIQEVQEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFP 855
Query: 232 LSPRNETIEADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHP 287
+ + I+ G + + C +G+ ++YW IE + E +
Sbjct: 856 MENQPSVIDVQLGKPLNIPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKE 1035
Query: 288 STKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFII 347
K +T + S V++ Y C V+N N + A V L +K L GG
Sbjct: 1036HLGEKEVELTLIFDSVVEADLANY--TCHVENRNGRKHASVLLRKKDLIYKIELAGGLGA 1209
Query: 348 LTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPK----TLGEGSF 403
+ ++ + +YK + ++++L+YR G D K YDAY+ Y K TL +
Sbjct: 1210IFLLLILLLVVYKCYNIELMLFYRQRFGG--DETTDDNKEYDAYLSYTKVDQDTL-DCDN 1380
Query: 404 SDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRD--- 460
++ + F ++LP+VLE +GYKLFI RD IE V++SRRLII+L D
Sbjct: 1381TEEEQFALEILPDVLEKHYGYKLFIPERDLIPSGTYIEDLTRCVEQSRRLIIVLTPDYIL 1560
Query: 461 MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI------QDYEKMPDSIQFIKQKHG 514
G+S E + ++N L+ IK++L+E ++ Q+ E + +I+ +
Sbjct: 1561RRGWSIF----ELESRLHNMLVSGEIKVILIECTELKGKVNCQEVESLKHNIKLL----S 1716
Query: 515 VICWSGDFQERPQSAK--TRFWKNLRYQMPAQRRSPLSKHRLL 555
+I W G P+S+K ++FWK+L Y+MP +++ LS +L
Sbjct: 1717LIKWKG-----PKSSKLNSKFWKHLVYEMPIKKKEMLSHCHVL 1830
>gb|AC007271.3|AC007271 Homo sapiens BAC clone RP11-4B12 from 2, complete sequence
Length = 179954
Score = 209 bits (532), Expect = 6e-52
Identities = 104/139 (74%), Positives = 117/139 (83%)
Frame = -1
Query: 438 DTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQ 497
D +EV NENVKKSRRLIIILVR+ GFSWLG SSEEQIA+YNAL+Q+GIK+VLLELEKIQ
Sbjct: 51089 DIVEVINENVKKSRRLIIILVRETSGFSWLGGSSEEQIAMYNALVQDGIKVVLLELEKIQ 50910
Query: 498 DYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTL 557
DYEKMP+SI+FIKQKHG I WSGDF + PQSAKTRFWKN+RY MP QRRSP SKH+LL+
Sbjct: 50909 DYEKMPESIKFIKQKHGAIRWSGDFTQGPQSAKTRFWKNVRYHMPVQRRSPSSKHQLLS- 50733
Query: 558 DPVRDTKEKLPAATHLPLG 576
TKEKL H+PLG
Sbjct: 50732 ---PATKEKLQREAHVPLG 50685
Score = 113 bits (282), Expect(2) = 5e-46
Identities = 51/80 (63%), Positives = 61/80 (75%)
Frame = -2
Query: 23 DVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNE 82
D C E +I+L S NEID+R CPL PN+ H TI WYK+DSKTP+S ++ SRIHQ E
Sbjct: 62668 DKCKEREEKIILVSSANEIDVRPCPLNPNE-HKGTITWYKDDSKTPVSTEQASRIHQHKE 62492
Query: 83 HLWFVPAKVEDSGYYYCIVR 102
LWFVPAKVEDSG+YYC+VR
Sbjct: 62491 KLWFVPAKVEDSGHYYCVVR 62432
Score = 103 bits (256), Expect = 6e-20
Identities = 49/56 (87%), Positives = 51/56 (90%)
Frame = -2
Query: 382 ASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGE 437
ASDGKTYDAYILYPKT+GEGS SD D FVFK+LPEVLE Q GYKLFIYGRDDYVGE
Sbjct: 51964 ASDGKTYDAYILYPKTVGEGSTSDCDIFVFKVLPEVLEKQCGYKLFIYGRDDYVGE 51797
Score = 98.2 bits (243), Expect(2) = 5e-46
Identities = 39/64 (60%), Positives = 53/64 (81%)
Frame = -3
Query: 102 RNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEV 161
RNS+YCL+ K++ +EN+P LCY+ QA F Q+L +AGDG LVCPY+ +FK+ENNELP++
Sbjct: 62328 RNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKL 62149
Query: 162 QWYK 165
QWYK
Sbjct: 62148 QWYK 62137
Score = 93.2 bits (230), Expect = 6e-17
Identities = 40/59 (67%), Positives = 51/59 (85%)
Frame = -1
Query: 166 NCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDEN 224
+CKPLLLDN+ F GVKD+L+V NVAE+HRG+Y C SYT+ GKQYP+TRVI+FIT+ E+
Sbjct: 61328 DCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLGES 61152
Score = 68.9 bits (167), Expect = 1e-09
Identities = 29/50 (58%), Positives = 42/50 (84%)
Frame = -3
Query: 284 VEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYP 333
VE+P+ KR+ TLIT LNISE++S+FY++PF C KNT+ ++A++QLIYP
Sbjct: 54753 VENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 54604
Score = 66.2 bits (160), Expect = 8e-09
Identities = 28/38 (73%), Positives = 31/38 (80%)
Frame = -3
Query: 244 GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDY 281
GS IQLICNVTGQ SD+ YWKWNGS I+ +DP L EDY
Sbjct: 55641 GSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDY 55528
Score = 65.1 bits (157), Expect = 2e-08
Identities = 29/48 (60%), Positives = 36/48 (74%)
Frame = -2
Query: 334 VPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSK 381
V +F+ ++IG + LT IVC V IYK+FK+DIVLWYRDSC FLP K
Sbjct: 52855 VTNFQKHMIGICVTLTVIIVCSVFIYKIFKIDIVLWYRDSCYDFLPIK 52712
Score = 55.8 bits (133), Expect = 1e-05
Identities = 25/44 (56%), Positives = 30/44 (67%)
Frame = -1
Query: 330 LIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDS 373
L + PDF+ YLIGG I L A V V IY +FK+DIVLWYR +
Sbjct: 1556 LSFVAPDFRAYLIGGLIALVAVAVSVVYIYNIFKIDIVLWYRSA 1425
Score = 51.6 bits (122), Expect = 2e-04
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = -1
Query: 20 LEIDVCTEY--PNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRI 77
L +D C + N+I LS ++ C P ++ WYKN SK P+S SRI
Sbjct: 38375 LSLDGCKDIFMKNEI---LSASQPFAFNCTFPPITSGEVSVTWYKNSSKIPVSKIIQSRI 38205
Query: 78 HQQNEHLWFVPAKVEDSGYYYCIVR 102
HQ + F+P + DSG Y C+++
Sbjct: 38204 HQDETWILFLPMEWGDSGVYQCVIK 38130
Score = 37.4 bits (85), Expect = 4.0
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = -2
Query: 177 FFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP 234
F ++ +LLV NV+ E RG+Y C+ T GKQY V+ IT+ +K V LSP
Sbjct: 25858 FTVLETRLLVSNVSAEDRGNYACQAILTHSGKQY---EVLNGITVSISKYAH-VCLSP 25697
>ref|NM_016232.2| Homo sapiens interleukin 1 receptor-like 1 (IL1RL1), mRNA
Length = 1671
Score = 208 bits (530), Expect = 1e-51
Identities = 158/542 (29%), Positives = 254/542 (46%), Gaps = 23/542 (4%)
Frame = +1
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + T+ WY + + I +R+ + L F+PA+V DSG Y
Sbjct: 85 NEALIVRCPRQGKPSY--TVDWYYSQTNKSIPTQERNRVFASGQLLKFLPAEVADSGIYT 258
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
CIVR+ T+ VT+ + L YST + + + + CP + +
Sbjct: 259 CIVRSPTFNRTGYANVTIYKKQSDCNVPDYLMYSTVSGSEK------NSKIYCPTIDLY- 417
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N ++W+KNC+ L + K L++ NV E GDY C+ + G Y V
Sbjct: 418 ---NWTAPLEWFKNCQAL--QGSRYRAHKSFLVIDNVMTEDAGDYTCKFIHNENGANYSV 582
Query: 213 TRVIQFITIDENKRDR-PVILSP-RNETIEADPGSMIQLICNVT----GQFSDLVYWKWN 266
T F DE PVI +P +NE E + G L C+ QF V W+ N
Sbjct: 583 TATRSFTVKDEQGFSLFPVIGAPAQNEIKEVEIGKNANLTCSACFGKGTQFLAAVLWQLN 762
Query: 267 GSEI-EWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFES 325
G++I ++ +P + ++ + + L L I++VK + + C+ N +
Sbjct: 763 GTKITDFGEPRIQQE-EGQNQSFSNGLACLDMVLRIADVKEEDLLLQYDCLALNLHGLRR 939
Query: 326 AHVQLIY--PVPDFKNY-LIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKA 382
V+L P+ Y +I + I V I K+F ++ L +RD +
Sbjct: 940 HTVRLSRKNPIDHHSIYCIIAVCSVFLMLINVLVIILKMFWIEATLLWRDIAKPY--KTR 1113
Query: 383 SDGKTYDAYILYPKTLGEGS--FSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTI 440
+DGK YDAY++YP+ + S ++ FV ++LP+VLE + GY L IYGRD GED +
Sbjct: 1114NDGKLYDAYVVYPRNYKSSTDGASRVEHFVHQILPDVLENKCGYTLCIYGRDMLPGEDVV 1293
Query: 441 EVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDY- 499
N++KSRR I IL + + E+++A++ ALIQ K++L+E+E + +
Sbjct: 1294TAVETNIRKSRRHIFILTPQITHNKEF--AYEQEVALHCALIQNDAKVILIEMEALSELD 1467
Query: 500 ----EKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLL 555
E + DS+Q + + G I W D +S ++FWK++RYQMP + P L
Sbjct: 1468MLQAEALQDSLQHLMKVQGTIKWREDHIANKRSLNSKFWKHVRYQMPVPSKIPRKASSLT 1647
Query: 556 TL 557
L
Sbjct: 1648PL 1653
>dbj|AB012701.2|AB012701 Homo sapiens mRNA for ST2L, 5' noncoding region including distal
exon (exon 1a), complete cds
Length = 2058
Score = 208 bits (530), Expect = 1e-51
Identities = 158/542 (29%), Positives = 254/542 (46%), Gaps = 23/542 (4%)
Frame = +2
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + T+ WY + + I +R+ + L F+PA+V DSG Y
Sbjct: 356 NEALIVRCPRQGKPSY--TVDWYYSQTNKSIPTQERNRVFASGQLLKFLPAEVADSGIYT 529
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
CIVR+ T+ VT+ + L YST + + + + CP + +
Sbjct: 530 CIVRSPTFNRTGYANVTIYKKQSDCNVPDYLMYSTVSGSEK------NSKIYCPTIDLY- 688
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N ++W+KNC+ L + K L++ NV E GDY C+ + G Y V
Sbjct: 689 ---NWTAPLEWFKNCQAL--QGSRYRAHKSFLVIDNVMTEDAGDYTCKFIHNENGANYSV 853
Query: 213 TRVIQFITIDENKRDR-PVILSP-RNETIEADPGSMIQLICNVT----GQFSDLVYWKWN 266
T F DE PVI +P +NE E + G L C+ QF V W+ N
Sbjct: 854 TATRSFTVKDEQGFSLFPVIGAPAQNEIKEVEIGKNANLTCSACFGKGTQFLAAVLWQLN 1033
Query: 267 GSEI-EWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFES 325
G++I ++ +P + ++ + + L L I++VK + + C+ N +
Sbjct: 1034GTKITDFGEPRIQQE-EGQNQSFSNGLACLDMVLRIADVKEEDLLLQYDCLALNLHGLRR 1210
Query: 326 AHVQLIY--PVPDFKNY-LIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKA 382
V+L P+ Y +I + I V I K+F ++ L +RD +
Sbjct: 1211HTVRLSRKNPIDHHSIYCIIAVCSVFLMLINVLVIILKMFWIEATLLWRDIAKPY--KTR 1384
Query: 383 SDGKTYDAYILYPKTLGEGS--FSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTI 440
+DGK YDAY++YP+ + S ++ FV ++LP+VLE + GY L IYGRD GED +
Sbjct: 1385NDGKLYDAYVVYPRNYKSSTDGASRVEHFVHQILPDVLENKCGYTLCIYGRDMLPGEDVV 1564
Query: 441 EVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDY- 499
N++KSRR I IL + + E+++A++ ALIQ K++L+E+E + +
Sbjct: 1565TAVETNIRKSRRHIFILTPQITHNKEF--AYEQEVALHCALIQNDAKVILIEMEALSELD 1738
Query: 500 ----EKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLL 555
E + DS+Q + + G I W D +S ++FWK++RYQMP + P L
Sbjct: 1739MLQAEALQDSLQHLMKVQGTIKWREDHIANKRSLNSKFWKHVRYQMPVPSKIPRKASSLT 1918
Query: 556 TL 557
L
Sbjct: 1919PL 1924
>gb|AF284436.1|AF284436 Homo sapiens TIGIRR-1 mRNA, complete cds
Length = 2212
Score = 206 bits (524), Expect = 5e-51
Identities = 155/563 (27%), Positives = 272/563 (47%), Gaps = 29/563 (5%)
Frame = +2
Query: 22 IDVCTEYPNQIVLFLSVNEIDIR-KCPL---------TPNKMHGDTIIWYKN--DSKTPI 69
+D C ++ + ++++ +R KC L + + G ++WYKN D + PI
Sbjct: 233 VDGCIDWSVDLKTYMALAGEPVRVKCALFYSYIRTNYSTAQSTGLRLMWYKNKGDLEEPI 412
Query: 70 SADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQA 129
+ R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +++TV EN+ GLCY+++
Sbjct: 413 IFS-EVRMSKEEDSIWFHSAEAQDSGFYTCVLRNSTYCMKVSMSLTVAENESGLCYNSRI 589
Query: 130 TFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNV 189
+ ++ + + CP + FK + E P+V WYK CKP + ++ + LL++ V
Sbjct: 590 RYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMWRSI-IIQKGNALLIQEV 763
Query: 190 AEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI-LSPRNETIEADPGSMIQ 248
EE G+Y C + Y GK T ++ + +K +P+ + + I+ G +
Sbjct: 764 QEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFPMENQPSVIDVQLGKPLN 937
Query: 249 LICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEV 304
+ C +G+ ++YW IE + E + K + + S V
Sbjct: 938 IPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKEHLGEKEVELALIFDSVV 1117
Query: 305 KSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKV 364
++ Y C V+N N + A V L +K L GG + +V V IYK + +
Sbjct: 1118EADLANY--TCHVENRNGRKHASVLLRKKDLIYKIELAGGLGAIFLLLVLLVVIYKCYNI 1291
Query: 365 DIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD---LDTFVFKLLPEVLEGQ 421
+++L+YR D K YDAY+ Y K + D + F ++LP+VLE
Sbjct: 1292ELMLFYRQHFGA--DETNDDNKEYDAYLSYTKVDQDTLDCDNPEEEQFALEVLPDVLEKH 1465
Query: 422 FGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRD---MGGFSWLGQSSEEQIAIY 478
+GYKLFI RD +E V++SRRLII+L D G+S E + ++
Sbjct: 1466YGYKLFIPERDLIPSGTYMEDLTRYVEQSRRLIIVLTPDYILRRGWSIF----ELESRLH 1633
Query: 479 NALIQEGIKIVLLELEKI------QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTR 532
N L+ IK++L+E ++ Q+ E + SI+ + +I W G + ++
Sbjct: 1634NMLVSGEIKVILIECTELKGKVNCQEVESLKRSIKLL----SLIKWKG---SKSSKLNSK 1792
Query: 533 FWKNLRYQMPAQRRSPLSKHRLL 555
FWK+L Y+MP +++ L + +L
Sbjct: 1793FWKHLVYEMPIKKKEMLPRCHVL 1861
>gb|AF212016.1|AF212016 Homo sapiens interleukin-1 receptor 9 (IL1R9) mRNA, complete cds
Length = 2061
Score = 206 bits (524), Expect = 5e-51
Identities = 155/563 (27%), Positives = 272/563 (47%), Gaps = 29/563 (5%)
Frame = +1
Query: 22 IDVCTEYPNQIVLFLSVNEIDIR-KCPL---------TPNKMHGDTIIWYKN--DSKTPI 69
+D C ++ + ++++ +R KC L + + G ++WYKN D + PI
Sbjct: 82 VDGCIDWSVDLKTYMALAGEPVRVKCALFYSYIRTNYSTAQSTGLRLMWYKNKGDLEEPI 261
Query: 70 SADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQA 129
+ R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +++TV EN+ GLCY+++
Sbjct: 262 IFS-EVRMSKEEDSIWFHSAEAQDSGFYTCVLRNSTYCMKVSMSLTVAENESGLCYNSRI 438
Query: 130 TFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNV 189
+ ++ + + CP + FK + E P+V WYK CKP + ++ + LL++ V
Sbjct: 439 RYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMWRSI-IIQKGNALLIQEV 612
Query: 190 AEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI-LSPRNETIEADPGSMIQ 248
EE G+Y C + Y GK T ++ + +K +P+ + + I+ G +
Sbjct: 613 QEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFPMENQPSVIDVQLGKPLN 786
Query: 249 LICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEV 304
+ C +G+ ++YW IE + E + K + + S V
Sbjct: 787 IPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKEHLGEKEVELALIFDSVV 966
Query: 305 KSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKV 364
++ Y C V+N N + A V L +K L GG + +V V IYK + +
Sbjct: 967 EADLANY--TCHVENRNGRKHASVLLRKKDLIYKIELAGGLGAIFLLLVLLVVIYKCYNI 1140
Query: 365 DIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD---LDTFVFKLLPEVLEGQ 421
+++L+YR D K YDAY+ Y K + D + F ++LP+VLE
Sbjct: 1141ELMLFYRQHFGA--DETNDDNKEYDAYLSYTKVDQDTLDCDNPEEEQFALEVLPDVLEKH 1314
Query: 422 FGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRD---MGGFSWLGQSSEEQIAIY 478
+GYKLFI RD +E V++SRRLII+L D G+S E + ++
Sbjct: 1315YGYKLFIPERDLIPSGTYMEDLTRYVEQSRRLIIVLTPDYILRRGWSIF----ELESRLH 1482
Query: 479 NALIQEGIKIVLLELEKI------QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTR 532
N L+ IK++L+E ++ Q+ E + SI+ + +I W G + ++
Sbjct: 1483NMLVSGEIKVILIECTELKGKVNCQEVESLKRSIKLL----SLIKWKG---SKSSKLNSK 1641
Query: 533 FWKNLRYQMPAQRRSPLSKHRLL 555
FWK+L Y+MP +++ L + +L
Sbjct: 1642FWKHLVYEMPIKKKEMLPRCHVL 1710
>ref|XM_034808.1| Homo sapiens interleukin 1 receptor accessory protein-like 2
(IL1RAPL2), mRNA
Length = 2152
Score = 206 bits (524), Expect = 5e-51
Identities = 155/563 (27%), Positives = 272/563 (47%), Gaps = 29/563 (5%)
Frame = +2
Query: 22 IDVCTEYPNQIVLFLSVNEIDIR-KCPL---------TPNKMHGDTIIWYKN--DSKTPI 69
+D C ++ + ++++ +R KC L + + G ++WYKN D + PI
Sbjct: 5 VDGCIDWSVDLKTYMALAGEPVRVKCALFYSYIRTNYSTAQSTGLRLMWYKNKGDLEEPI 184
Query: 70 SADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQA 129
+ R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +++TV EN+ GLCY+++
Sbjct: 185 IFS-EVRMSKEEDSIWFHSAEAQDSGFYTCVLRNSTYCMKVSMSLTVAENESGLCYNSRI 361
Query: 130 TFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNV 189
+ ++ + + CP + FK + E P+V WYK CKP + ++ + LL++ V
Sbjct: 362 RYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMWRSI-IIQKGNALLIQEV 535
Query: 190 AEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI-LSPRNETIEADPGSMIQ 248
EE G+Y C + Y GK T ++ + +K +P+ + + I+ G +
Sbjct: 536 QEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFPMENQPSVIDVQLGKPLN 709
Query: 249 LICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEV 304
+ C +G+ ++YW IE + E + K + + S V
Sbjct: 710 IPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKEHLGEKEVELALIFDSVV 889
Query: 305 KSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKV 364
++ Y C V+N N + A V L +K L GG + +V V IYK + +
Sbjct: 890 EADLANY--TCHVENRNGRKHASVLLRKKDLIYKIELAGGLGAIFLLLVLLVVIYKCYNI 1063
Query: 365 DIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD---LDTFVFKLLPEVLEGQ 421
+++L+YR D K YDAY+ Y K + D + F ++LP+VLE
Sbjct: 1064ELMLFYRQHFGA--DETNDDNKEYDAYLSYTKVDQDTLDCDNPEEEQFALEVLPDVLEKH 1237
Query: 422 FGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRD---MGGFSWLGQSSEEQIAIY 478
+GYKLFI RD +E V++SRRLII+L D G+S E + ++
Sbjct: 1238YGYKLFIPERDLIPSGTYMEDLTRYVEQSRRLIIVLTPDYILRRGWSIF----ELESRLH 1405
Query: 479 NALIQEGIKIVLLELEKI------QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTR 532
N L+ IK++L+E ++ Q+ E + SI+ + +I W G + ++
Sbjct: 1406NMLVSGEIKVILIECTELKGKVNCQEVESLKRSIKLL----SLIKWKG---SKSSKLNSK 1564
Query: 533 FWKNLRYQMPAQRRSPLSKHRLL 555
FWK+L Y+MP +++ L + +L
Sbjct: 1565FWKHLVYEMPIKKKEMLPRCHVL 1633
>ref|NM_017416.1| Homo sapiens interleukin 1 receptor accessory protein-like 2
(IL1RAPL2), mRNA
Length = 2985
Score = 206 bits (524), Expect = 5e-51
Identities = 155/563 (27%), Positives = 272/563 (47%), Gaps = 29/563 (5%)
Frame = +1
Query: 22 IDVCTEYPNQIVLFLSVNEIDIR-KCPL---------TPNKMHGDTIIWYKN--DSKTPI 69
+D C ++ + ++++ +R KC L + + G ++WYKN D + PI
Sbjct: 838 VDGCIDWSVDLKTYMALAGEPVRVKCALFYSYIRTNYSTAQSTGLRLMWYKNKGDLEEPI 1017
Query: 70 SADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQA 129
+ R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +++TV EN+ GLCY+++
Sbjct: 1018 IFS-EVRMSKEEDSIWFHSAEAQDSGFYTCVLRNSTYCMKVSMSLTVAENESGLCYNSRI 1194
Query: 130 TFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNV 189
+ ++ + + CP + FK + E P+V WYK CKP + ++ + LL++ V
Sbjct: 1195 RYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMWRSI-IIQKGNALLIQEV 1368
Query: 190 AEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI-LSPRNETIEADPGSMIQ 248
EE G+Y C + Y GK T ++ + +K +P+ + + I+ G +
Sbjct: 1369 QEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFPMENQPSVIDVQLGKPLN 1542
Query: 249 LICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEV 304
+ C +G+ ++YW IE + E + K + + S V
Sbjct: 1543 IPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKEHLGEKEVELALIFDSVV 1722
Query: 305 KSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKV 364
++ Y C V+N N + A V L +K L GG + +V V IYK + +
Sbjct: 1723 EADLANY--TCHVENRNGRKHASVLLRKKDLIYKIELAGGLGAIFLLLVLLVVIYKCYNI 1896
Query: 365 DIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD---LDTFVFKLLPEVLEGQ 421
+++L+YR D K YDAY+ Y K + D + F ++LP+VLE
Sbjct: 1897 ELMLFYRQHFGA--DETNDDNKEYDAYLSYTKVDQDTLDCDNPEEEQFALEVLPDVLEKH 2070
Query: 422 FGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRD---MGGFSWLGQSSEEQIAIY 478
+GYKLFI RD +E V++SRRLII+L D G+S E + ++
Sbjct: 2071 YGYKLFIPERDLIPSGTYMEDLTRYVEQSRRLIIVLTPDYILRRGWSIF----ELESRLH 2238
Query: 479 NALIQEGIKIVLLELEKI------QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTR 532
N L+ IK++L+E ++ Q+ E + SI+ + +I W G + ++
Sbjct: 2239 NMLVSGEIKVILIECTELKGKVNCQEVESLKRSIKLL----SLIKWKG---SKSSKLNSK 2397
Query: 533 FWKNLRYQMPAQRRSPLSKHRLL 555
FWK+L Y+MP +++ L + +L
Sbjct: 2398 FWKHLVYEMPIKKKEMLPRCHVL 2466
>emb|AJ272208.1|HSA272208 Homo sapiens mRNA for IL-1 receptor accessory protein-like 2
(IL1RAPL-2 gene)
Length = 2985
Score = 206 bits (524), Expect = 5e-51
Identities = 155/563 (27%), Positives = 272/563 (47%), Gaps = 29/563 (5%)
Frame = +1
Query: 22 IDVCTEYPNQIVLFLSVNEIDIR-KCPL---------TPNKMHGDTIIWYKN--DSKTPI 69
+D C ++ + ++++ +R KC L + + G ++WYKN D + PI
Sbjct: 838 VDGCIDWSVDLKTYMALAGEPVRVKCALFYSYIRTNYSTAQSTGLRLMWYKNKGDLEEPI 1017
Query: 70 SADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQA 129
+ R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +++TV EN+ GLCY+++
Sbjct: 1018 IFS-EVRMSKEEDSIWFHSAEAQDSGFYTCVLRNSTYCMKVSMSLTVAENESGLCYNSRI 1194
Query: 130 TFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNV 189
+ ++ + + CP + FK + E P+V WYK CKP + ++ + LL++ V
Sbjct: 1195 RYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMWRSI-IIQKGNALLIQEV 1368
Query: 190 AEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI-LSPRNETIEADPGSMIQ 248
EE G+Y C + Y GK T ++ + +K +P+ + + I+ G +
Sbjct: 1369 QEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFPMENQPSVIDVQLGKPLN 1542
Query: 249 LICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEV 304
+ C +G+ ++YW IE + E + K + + S V
Sbjct: 1543 IPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKEHLGEKEVELALIFDSVV 1722
Query: 305 KSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKV 364
++ Y C V+N N + A V L +K L GG + +V V IYK + +
Sbjct: 1723 EADLANY--TCHVENRNGRKHASVLLRKKDLIYKIELAGGLGAIFLLLVLLVVIYKCYNI 1896
Query: 365 DIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD---LDTFVFKLLPEVLEGQ 421
+++L+YR D K YDAY+ Y K + D + F ++LP+VLE
Sbjct: 1897 ELMLFYRQHFGA--DETNDDNKEYDAYLSYTKVDQDTLDCDNPEEEQFALEVLPDVLEKH 2070
Query: 422 FGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRD---MGGFSWLGQSSEEQIAIY 478
+GYKLFI RD +E V++SRRLII+L D G+S E + ++
Sbjct: 2071 YGYKLFIPERDLIPSGTYMEDLTRYVEQSRRLIIVLTPDYILRRGWSIF----ELESRLH 2238
Query: 479 NALIQEGIKIVLLELEKI------QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTR 532
N L+ IK++L+E ++ Q+ E + SI+ + +I W G + ++
Sbjct: 2239 NMLVSGEIKVILIECTELKGKVNCQEVESLKRSIKLL----SLIKWKG---SKSSKLNSK 2397
Query: 533 FWKNLRYQMPAQRRSPLSKHRLL 555
FWK+L Y+MP +++ L + +L
Sbjct: 2398 FWKHLVYEMPIKKKEMLPRCHVL 2466
>emb|AJ290436.1|HSA290436 Homo sapiens mRNA for IL1RAPL-2 related protein
Length = 2080
Score = 206 bits (524), Expect = 5e-51
Identities = 155/563 (27%), Positives = 272/563 (47%), Gaps = 29/563 (5%)
Frame = +2
Query: 22 IDVCTEYPNQIVLFLSVNEIDIR-KCPL---------TPNKMHGDTIIWYKN--DSKTPI 69
+D C ++ + ++++ +R KC L + + G ++WYKN D + PI
Sbjct: 101 VDGCIDWSVDLKTYMALAGEPVRVKCALFYSYIRTNYSTAQSTGLRLMWYKNKGDLEEPI 280
Query: 70 SADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQA 129
+ R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +++TV EN+ GLCY+++
Sbjct: 281 IFS-EVRMSKEEDSIWFHSAEAQDSGFYTCVLRNSTYCMKVSMSLTVAENESGLCYNSRI 457
Query: 130 TFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNV 189
+ ++ + + CP + FK + E P+V WYK CKP + ++ + LL++ V
Sbjct: 458 RYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMWRSI-IIQKGNALLIQEV 631
Query: 190 AEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI-LSPRNETIEADPGSMIQ 248
EE G+Y C + Y GK T ++ + +K +P+ + + I+ G +
Sbjct: 632 QEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFPMENQPSVIDVQLGKPLN 805
Query: 249 LICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEV 304
+ C +G+ ++YW IE + E + K + + S V
Sbjct: 806 IPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKEHLGEKEVELALIFDSVV 985
Query: 305 KSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKV 364
++ Y C V+N N + A V L +K L GG + +V V IYK + +
Sbjct: 986 EADLANY--TCHVENRNGRKHASVLLRKKDLIYKIELAGGLGAIFLLLVLLVVIYKCYNI 1159
Query: 365 DIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD---LDTFVFKLLPEVLEGQ 421
+++L+YR D K YDAY+ Y K + D + F ++LP+VLE
Sbjct: 1160ELMLFYRQHFGA--DETNDDNKEYDAYLSYTKVDQDTLDCDNPEEEQFALEVLPDVLEKH 1333
Query: 422 FGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRD---MGGFSWLGQSSEEQIAIY 478
+GYKLFI RD +E V++SRRLII+L D G+S E + ++
Sbjct: 1334YGYKLFIPERDLIPSGTYMEDLTRYVEQSRRLIIVLTPDYILRRGWSIF----ELESRLH 1501
Query: 479 NALIQEGIKIVLLELEKI------QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTR 532
N L+ IK++L+E ++ Q+ E + SI+ + +I W G + ++
Sbjct: 1502NMLVSGEIKVILIECTELKGKVNCQEVESLKRSIKLL----SLIKWKG---SKSSKLNSK 1660
Query: 533 FWKNLRYQMPAQRRSPLSKHRLL 555
FWK+L Y+MP +++ L + +L
Sbjct: 1661FWKHLVYEMPIKKKEMLPRCHVL 1729
>gb|AF181285.1|AF181285 Homo sapiens X-linked interleukin-1 receptor accessory protein-like
2 (IL1RAPL2) mRNA, partial cds
Length = 1979
Score = 206 bits (523), Expect = 7e-51
Identities = 149/520 (28%), Positives = 255/520 (48%), Gaps = 19/520 (3%)
Frame = +3
Query: 55 GDTIIWYKN--DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKV 112
G ++WYKN D + PI + R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +
Sbjct: 129 GLRLMWYKNKGDLEEPIIFS-EVRMSKEEDSIWFHSAEAQDSGFYTCVLRNSTYCMKVSM 305
Query: 113 TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
++TV EN+ GLCY+++ + ++ + + CP + FK + E P+V WYK CKP +
Sbjct: 306 SLTVAENESGLCYNSRIRYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMW 482
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI- 231
++ + LL++ V EE G+Y C + Y GK T ++ + +K +P+
Sbjct: 483 RSI-IIQKGNALLIQEVQEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFP 653
Query: 232 LSPRNETIEADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHP 287
+ + I+ G + + C +G+ ++YW IE + E +
Sbjct: 654 MENQPSVIDVQLGKPLNIPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKE 833
Query: 288 STKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFII 347
K + + S V++ Y C V+N N + A V L +K L GG
Sbjct: 834 HLGEKEVELALIFDSVVEADLANY--TCHVENRNGRKHASVLLRKKDLIYKIELAGGLGA 1007
Query: 348 LTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD-- 405
+ +V V IYK + ++++L+YR D K YDAY+ Y K + D
Sbjct: 1008IFLLLVLLVVIYKCYNIELMLFYRQHFGA--DETNDDNKEYDAYLSYTKVDQDTLDCDNP 1181
Query: 406 -LDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRD---M 461
+ F ++LP+VLE +GYKLFI RD +E V++SRRLII+L D
Sbjct: 1182EEEQFALEVLPDVLEKHYGYKLFIPERDLIPSGTYMEDLTRYVEQSRRLIIVLTPDYILR 1361
Query: 462 GGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI------QDYEKMPDSIQFIKQKHGV 515
G+S E + ++N L+ IK++L+E ++ Q+ E + SI+ + +
Sbjct: 1362RGWSIF----ELESRLHNMLVSGEIKVILIECTELKGKVNCQEVESLKRSIKLL----SL 1517
Query: 516 ICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLL 555
I W G + ++FWK+L Y+MP +++ L + +L
Sbjct: 1518IKWKG---SKSSKLNSKFWKHLVYEMPIKKKEMLPRCHVL 1628
>dbj|AB041739.2|AB041739 Gallus gallus mRNA for ST2LV, complete cds
Length = 2830
Score = 203 bits (516), Expect = 4e-50
Identities = 149/522 (28%), Positives = 249/522 (47%), Gaps = 12/522 (2%)
Frame = +2
Query: 50 PNKMHGDTIIWYKNDSKTPISADRD-SRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCL 108
P+ + + W+ ++ I + + SR+ + LWF+P +EDSG Y C++
Sbjct: 203 PHSVLSAKVTWHHTGTRKRIPEEEEGSRVFSKGIFLWFLPTSLEDSGNYTCVINYPDGSK 382
Query: 109 KT-KVTVTVLENDPGLCYSTQATFPQRLHIAGD---GSLVCPYVSYFKDENNELPEVQWY 164
K K+ V V G C FP R+ A + G + CP ++ EN + +QWY
Sbjct: 383 KERKMNVQVHPYKQGTC------FPSRILYANETRKGKISCP--TFRNYENATI--IQWY 532
Query: 165 KNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDEN 224
K+C+P+ +F + + N+ +E G Y C+ +YT RG+ + V+ F++ ++
Sbjct: 533 KDCRPI--QGERYFMHDPYIFIENLNKEDDGYYTCQFTYTHRGRVFNVSATRIFVSEAKH 706
Query: 225 KRDRPVILSPRNETI-EADPGSMIQLICN----VTGQFSDLVYWKWNGSEIEWNDPF-LA 278
IL P++E + E + G+ L C + Q +V W N E+ D +
Sbjct: 707 SSLPVQILFPKDEDVLEVELGAAFSLKCQARLGIKKQPIAVVTWDVNKMPAEYADEEKIR 886
Query: 279 EDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFK 338
+++ + E ++Y TL IS ++ + F CV N
Sbjct: 887 QEFSYFE--GQHQEYYGEATLTISNIEHTDLQSSFSCVAMNE------------------ 1006
Query: 339 NYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTL 398
+G T T V L K GK YDAY++YP++
Sbjct: 1007---MGN----TRTTVT-----------------------LRLKKKYGKIYDAYVIYPRSH 1096
Query: 399 G-EGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIIL 457
E +F ++ FV++++P++LE + GY L IYGRD Y GED + ++KSRRLII+L
Sbjct: 1097STEATF--VEYFVYQIMPDILENKCGYTLCIYGRDTYPGEDKANAIEKRIQKSRRLIILL 1270
Query: 458 VRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVIC 517
+ + L ++ IA+YNALIQ K++LLE+EK+ YE + +S+++I ++ G +
Sbjct: 1271TQQLINCQELNY--DQHIALYNALIQNDTKVILLEMEKMGSYENLQESLRYIIKQQGTVK 1444
Query: 518 WSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTLDP 559
W PQS+ ++FWK++RY MP RS S + T+ P
Sbjct: 1445WKEQHTVHPQSSNSKFWKHVRYHMPVTLRSSDSANAG*TVGP 1570
>gb|AF181284.1|AF181284 Homo sapiens X-linked interleukin-1 receptor accessory protein-like 1
(IL1RAPL1) mRNA, complete cds
Length = 2722
Score = 196 bits (497), Expect = 7e-48
Identities = 152/524 (29%), Positives = 256/524 (48%), Gaps = 23/524 (4%)
Frame = +2
Query: 55 GDTIIWYKN----DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKT 110
G +++WYK+ D + PI+ D SR+ ++ + +WF P ++DSG Y C++RNSTYC+K
Sbjct: 842 GLSLMWYKSSGPGDFEEPIAFD-GSRMSKEEDSIWFRPTLLQDSGLYACVIRNSTYCMKV 1018
Query: 111 KVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPL 170
+++TV END GLCY+++ + ++ ++ + C + F E PE+ WYK C+
Sbjct: 1019 SISLTVGENDTGLCYNSKMKYFEKAELSKSKEISCRDIEDFLLPTRE-PEILWYKECRTK 1195
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDR-P 229
S +D LL+R V E+ G+Y C + Y + V R + +T+ D+ P
Sbjct: 1196 TW-RPSIVFKRDTLLIREVREDDIGNYTCELKY----GGFVVRRTTE-LTVTAPLTDKPP 1357
Query: 230 VILSPRNETI---EADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDP--FLAED 280
+L P + E G L C +G S L+YW IE D D
Sbjct: 1358 KLLYPMESKLTIQETQLGDSANLTCRAFFGYSGDVSPLIYWMKGEKFIEDLDENRVWESD 1537
Query: 281 YQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNY 340
+ ++ +++ ++ ++ E + Y C V+N N A V L +
Sbjct: 1538 IRILKEHLGEQEVSISLIVDSVE-EGDLGNYS--CYVENGNGRRHASVLLHKRELMYTVE 1708
Query: 341 LIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKT--- 397
L GG + +VC V IYK +K++I+L+YR+ D K YDAY+ Y K
Sbjct: 1709 LAGGLGAILLLLVCLVTIYKCYKIEIMLFYRNHFGA--EELDGDNKDYDAYLSYTKVDPD 1882
Query: 398 LGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIIL 457
+ + F ++LP++LE +GYKLFI RD IE V +S+RLII++
Sbjct: 1883 QWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVM 2062
Query: 458 VRD---MGGFSWLGQSSEEQIAIYNALIQEGIKIVLL---ELEKIQDYEKMPDSIQFIKQ 511
+ G+S E + + N L+ IK++L+ EL I +Y+++ ++++ +
Sbjct: 2063 TPNYVVRRGWSIF----ELETRLRNMLVTGEIKVILIECSELRGIMNYQEV-EALKHTIK 2227
Query: 512 KHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLL 555
VI W G + ++FWK L+Y+MP +R P++ + L
Sbjct: 2228 LLTVIKWHG---PKCNKLNSKFWKRLQYEMPFKRIEPITHEQAL 2350
>ref|NM_014271.1| Homo sapiens interleukin 1 receptor accessory protein-like 1
(IL1RAPL1), mRNA
Length = 3504
Score = 196 bits (497), Expect = 7e-48
Identities = 152/524 (29%), Positives = 256/524 (48%), Gaps = 23/524 (4%)
Frame = +1
Query: 55 GDTIIWYKN----DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKT 110
G +++WYK+ D + PI+ D SR+ ++ + +WF P ++DSG Y C++RNSTYC+K
Sbjct: 721 GLSLMWYKSSGPGDFEEPIAFD-GSRMSKEEDSIWFRPTLLQDSGLYACVIRNSTYCMKV 897
Query: 111 KVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPL 170
+++TV END GLCY+++ + ++ ++ + C + F E PE+ WYK C+
Sbjct: 898 SISLTVGENDTGLCYNSKMKYFEKAELSKSKEISCRDIEDFLLPTRE-PEILWYKECRTK 1074
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDR-P 229
S +D LL+R V E+ G+Y C + Y + V R + +T+ D+ P
Sbjct: 1075 TW-RPSIVFKRDTLLIREVREDDIGNYTCELKY----GGFVVRRTTE-LTVTAPLTDKPP 1236
Query: 230 VILSPRNETI---EADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDP--FLAED 280
+L P + E G L C +G S L+YW IE D D
Sbjct: 1237 KLLYPMESKLTIQETQLGDSANLTCRAFFGYSGDVSPLIYWMKGEKFIEDLDENRVWESD 1416
Query: 281 YQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNY 340
+ ++ +++ ++ ++ E + Y C V+N N A V L +
Sbjct: 1417 IRILKEHLGEQEVSISLIVDSVE-EGDLGNYS--CYVENGNGRRHASVLLHKRELMYTVE 1587
Query: 341 LIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKT--- 397
L GG + +VC V IYK +K++I+L+YR+ D K YDAY+ Y K
Sbjct: 1588 LAGGLGAILLLLVCLVTIYKCYKIEIMLFYRNHFGA--EELDGDNKDYDAYLSYTKVDPD 1761
Query: 398 LGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIIL 457
+ + F ++LP++LE +GYKLFI RD IE V +S+RLII++
Sbjct: 1762 QWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVM 1941
Query: 458 VRD---MGGFSWLGQSSEEQIAIYNALIQEGIKIVLL---ELEKIQDYEKMPDSIQFIKQ 511
+ G+S E + + N L+ IK++L+ EL I +Y+++ ++++ +
Sbjct: 1942 TPNYVVRRGWSIF----ELETRLRNMLVTGEIKVILIECSELRGIMNYQEV-EALKHTIK 2106
Query: 512 KHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLL 555
VI W G + ++FWK L+Y+MP +R P++ + L
Sbjct: 2107 LLTVIKWHG---PKCNKLNSKFWKRLQYEMPFKRIEPITHEQAL 2229
>emb|AJ243874.1|HSA243874 Homo sapiens mRNA for oligophrenin-4 (OPHN4 gene)
Length = 3504
Score = 196 bits (497), Expect = 7e-48
Identities = 152/524 (29%), Positives = 256/524 (48%), Gaps = 23/524 (4%)
Frame = +1
Query: 55 GDTIIWYKN----DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKT 110
G +++WYK+ D + PI+ D SR+ ++ + +WF P ++DSG Y C++RNSTYC+K
Sbjct: 721 GLSLMWYKSSGPGDFEEPIAFD-GSRMSKEEDSIWFRPTLLQDSGLYACVIRNSTYCMKV 897
Query: 111 KVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPL 170
+++TV END GLCY+++ + ++ ++ + C + F E PE+ WYK C+
Sbjct: 898 SISLTVGENDTGLCYNSKMKYFEKAELSKSKEISCRDIEDFLLPTRE-PEILWYKECRTK 1074
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDR-P 229
S +D LL+R V E+ G+Y C + Y + V R + +T+ D+ P
Sbjct: 1075 TW-RPSIVFKRDTLLIREVREDDIGNYTCELKY----GGFVVRRTTE-LTVTAPLTDKPP 1236
Query: 230 VILSPRNETI---EADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDP--FLAED 280
+L P + E G L C +G S L+YW IE D D
Sbjct: 1237 KLLYPMESKLTIQETQLGDSANLTCRAFFGYSGDVSPLIYWMKGEKFIEDLDENRVWESD 1416
Query: 281 YQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNY 340
+ ++ +++ ++ ++ E + Y C V+N N A V L +
Sbjct: 1417 IRILKEHLGEQEVSISLIVDSVE-EGDLGNYS--CYVENGNGRRHASVLLHKRELMYTVE 1587
Query: 341 LIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKT--- 397
L GG + +VC V IYK +K++I+L+YR+ D K YDAY+ Y K
Sbjct: 1588 LAGGLGAILLLLVCLVTIYKCYKIEIMLFYRNHFGA--EELDGDNKDYDAYLSYTKVDPD 1761
Query: 398 LGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIIL 457
+ + F ++LP++LE +GYKLFI RD IE V +S+RLII++
Sbjct: 1762 QWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVM 1941
Query: 458 VRD---MGGFSWLGQSSEEQIAIYNALIQEGIKIVLL---ELEKIQDYEKMPDSIQFIKQ 511
+ G+S E + + N L+ IK++L+ EL I +Y+++ ++++ +
Sbjct: 1942 TPNYVVRRGWSIF----ELETRLRNMLVTGEIKVILIECSELRGIMNYQEV-EALKHTIK 2106
Query: 512 KHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLL 555
VI W G + ++FWK L+Y+MP +R P++ + L
Sbjct: 2107 LLTVIKWHG---PKCNKLNSKFWKRLQYEMPFKRIEPITHEQAL 2229
>gb|AF284435.1|AF284435 Homo sapiens TIGIRR-2 mRNA, complete cds
Length = 2258
Score = 196 bits (497), Expect = 7e-48
Identities = 152/524 (29%), Positives = 256/524 (48%), Gaps = 23/524 (4%)
Frame = +1
Query: 55 GDTIIWYKN----DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKT 110
G +++WYK+ D + PI+ D SR+ ++ + +WF P ++DSG Y C++RNSTYC+K
Sbjct: 298 GLSLMWYKSSGPGDFEEPIAFD-GSRMSKEEDSIWFRPTLLQDSGLYACVIRNSTYCMKV 474
Query: 111 KVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPL 170
+++TV END GLCY+++ + ++ ++ + C + F E PE+ WYK C+
Sbjct: 475 SISLTVGENDTGLCYNSKMKYFEKAELSKSKEISCRDIEDFLLPTRE-PEILWYKECRTK 651
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDR-P 229
S +D LL+R V E+ G+Y C + Y + V R + +T+ D+ P
Sbjct: 652 TW-RPSIVFKRDTLLIREVREDDIGNYTCELKY----GGFVVRRTTE-LTVTAPLTDKPP 813
Query: 230 VILSPRNETI---EADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDP--FLAED 280
+L P + E G L C +G S L+YW IE D D
Sbjct: 814 KLLYPMESKLTIQETQLGDSANLTCRAFFGYSGDVSPLIYWMKGEKFIEDLDENRVWESD 993
Query: 281 YQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNY 340
+ ++ +++ ++ ++ E + Y C V+N N A V L +
Sbjct: 994 IRILKEHLGEQEVSISLIVDSVE-EGDLGNYS--CYVENGNGRRHASVLLHKRELMYTVE 1164
Query: 341 LIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKT--- 397
L GG + +VC V IYK +K++I+L+YR+ D K YDAY+ Y K
Sbjct: 1165LAGGLGAILLLLVCLVTIYKCYKIEIMLFYRNHFGA--EELDGDNKDYDAYLSYTKVDPD 1338
Query: 398 LGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIIL 457
+ + F ++LP++LE +GYKLFI RD IE V +S+RLII++
Sbjct: 1339QWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVM 1518
Query: 458 VRD---MGGFSWLGQSSEEQIAIYNALIQEGIKIVLL---ELEKIQDYEKMPDSIQFIKQ 511
+ G+S E + + N L+ IK++L+ EL I +Y+++ ++++ +
Sbjct: 1519TPNYVVRRGWSIF----ELETRLRNMLVTGEIKVILIECSELRGIMNYQEV-EALKHTIK 1683
Query: 512 KHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLL 555
VI W G + ++FWK L+Y+MP +R P++ + L
Sbjct: 1684LLTVIKWHG---PKCNKLNSKFWKRLQYEMPFKRIEPITHEQAL 1806
>ref|NM_003855.1| Homo sapiens interleukin 18 receptor 1 (IL18R1), mRNA
Length = 3522
Score = 182 bits (461), Expect = 1e-43
Identities = 150/556 (26%), Positives = 257/556 (45%), Gaps = 12/556 (2%)
Frame = +1
Query: 25 CTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSK---TPISADRDSRIHQQN 81
CT P+ V+ + C L +++ T WYK+ ++ SRI +
Sbjct: 88 CTSRPHITVVEGEPFYLKHCSCSLA-HEIETTTKSWYKSSGSQEHVELNPRSSSRIALHD 264
Query: 82 EHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDG 141
L F P ++ D+G Y+ ++N T K + V+ + C++ + + + +
Sbjct: 265 CVLEFWPVELNDTGSYFFQMKNYTQ----KWKLNVIRRNKHSCFTERQVTSKIVEVKKFF 432
Query: 142 SLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRM 201
+ C SY++ N YKNCK LLL+N K+ + +N E +G Y C
Sbjct: 433 QITCEN-SYYQTLVNS---TSLYKNCKKLLLENN-----KNPTIKKNAEFEDQGYYSCVH 585
Query: 202 SYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLV 261
GK + +T+ +++ PV+L P+ + + G ++L C+ D++
Sbjct: 586 FLHHNGKLFNITKTFNITIVEDRSNIVPVLLGPKLNHVAVELGKNVRLNCSALLNEEDVI 765
Query: 262 YWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTN 321
YW + E +DP + E+ + + + + K+ L I + + C V +T
Sbjct: 766 YWMFG--EENGSDPNIHEEKE-MRIMTPEGKWHASKVLRIENIGESNLNVLYNCTVASTG 936
Query: 322 IFESAHVQLI-------YPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSC 374
++ L+ P F +I +IL A +VC V + +++VD+VL+YR
Sbjct: 937 GTDTKSFILVRKADMADIPGHVFTRGMIIAVLILVA-VVCLVTVCVIYRVDLVLFYRHLT 1113
Query: 375 SGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDY 434
+DGKTYDA++ Y K + + TF ++LP VLE FGYKL I+ RD
Sbjct: 1114RR--DETLTDGKTYDAFVSYLKECRPENGEE-HTFAVEILPRVLEKHFGYKLCIFERDVV 1284
Query: 435 VGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQS--SEEQIAIYNALIQEGIKIVLLE 492
G ++ + ++KSRRLII+L + S++ E + ++ AL++ IKI+L+E
Sbjct: 1285PGGAVVDEIHSLIEKSRRLIIVLSK-----SYMSNEVRYELESGLHEALVERKIKIILIE 1449
Query: 493 LEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKH 552
+ D+ +P S++ +K H V+ W D + S +RFWKNL Y MPA+
Sbjct: 1450FTPVTDFTFLPQSLKLLK-SHRVLKWKAD---KSLSYNSRFWKNLLYLMPAK-------- 1593
Query: 553 RLLTLDPVRDTKEKLP 568
T+ P RD E LP
Sbjct: 1594---TVKPGRDEPEVLP 1632
>gb|U43672.1|HSU43672 Human putative transmembrane receptor IL-1Rrp mRNA, complete cds
Length = 3522
Score = 182 bits (461), Expect = 1e-43
Identities = 150/556 (26%), Positives = 257/556 (45%), Gaps = 12/556 (2%)
Frame = +1
Query: 25 CTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSK---TPISADRDSRIHQQN 81
CT P+ V+ + C L +++ T WYK+ ++ SRI +
Sbjct: 88 CTSRPHITVVEGEPFYLKHCSCSLA-HEIETTTKSWYKSSGSQEHVELNPRSSSRIALHD 264
Query: 82 EHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDG 141
L F P ++ D+G Y+ ++N T K + V+ + C++ + + + +
Sbjct: 265 CVLEFWPVELNDTGSYFFQMKNYTQ----KWKLNVIRRNKHSCFTERQVTSKIVEVKKFF 432
Query: 142 SLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRM 201
+ C SY++ N YKNCK LLL+N K+ + +N E +G Y C
Sbjct: 433 QITCEN-SYYQTLVNS---TSLYKNCKKLLLENN-----KNPTIKKNAEFEDQGYYSCVH 585
Query: 202 SYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLV 261
GK + +T+ +++ PV+L P+ + + G ++L C+ D++
Sbjct: 586 FLHHNGKLFNITKTFNITIVEDRSNIVPVLLGPKLNHVAVELGKNVRLNCSALLNEEDVI 765
Query: 262 YWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTN 321
YW + E +DP + E+ + + + + K+ L I + + C V +T
Sbjct: 766 YWMFG--EENGSDPNIHEEKE-MRIMTPEGKWHASKVLRIENIGESNLNVLYNCTVASTG 936
Query: 322 IFESAHVQLI-------YPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSC 374
++ L+ P F +I +IL A +VC V + +++VD+VL+YR
Sbjct: 937 GTDTKSFILVRKADMADIPGHVFTRGMIIAVLILVA-VVCLVTVCVIYRVDLVLFYRHLT 1113
Query: 375 SGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDY 434
+DGKTYDA++ Y K + + TF ++LP VLE FGYKL I+ RD
Sbjct: 1114RR--DETLTDGKTYDAFVSYLKECRPENGEE-HTFAVEILPRVLEKHFGYKLCIFERDVV 1284
Query: 435 VGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQS--SEEQIAIYNALIQEGIKIVLLE 492
G ++ + ++KSRRLII+L + S++ E + ++ AL++ IKI+L+E
Sbjct: 1285PGGAVVDEIHSLIEKSRRLIIVLSK-----SYMSNEVRYELESGLHEALVERKIKIILIE 1449
Query: 493 LEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKH 552
+ D+ +P S++ +K H V+ W D + S +RFWKNL Y MPA+
Sbjct: 1450FTPVTDFTFLPQSLKLLK-SHRVLKWKAD---KSLSYNSRFWKNLLYLMPAK-------- 1593
Query: 553 RLLTLDPVRDTKEKLP 568
T+ P RD E LP
Sbjct: 1594---TVKPGRDEPEVLP 1632
>dbj|AK026803.1|AK026803 Homo sapiens cDNA: FLJ23150 fis, clone LNG09358
Length = 1897
Score = 181 bits (459), Expect = 2e-43
Identities = 88/116 (75%), Positives = 99/116 (84%)
Frame = +1
Query: 438 DTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQ 497
D +EV NENVKKSRRLIIILVR+ GFSWLG SSEEQIA+YNAL+Q+GIK+VLLELEKIQ
Sbjct: 1543 DIVEVINENVKKSRRLIIILVRETSGFSWLGGSSEEQIAMYNALVQDGIKVVLLELEKIQ 1722
Query: 498 DYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHR 553
DYEKMP+SI+FIKQKHG I WSGDF + PQSAKTRFWKN+RY MP LSK +
Sbjct: 1723 DYEKMPESIKFIKQKHGAIRWSGDFTQGPQSAKTRFWKNVRYHMPVPVTVTLSKKK 1890
Score = 103 bits (256), Expect = 6e-20
Identities = 49/56 (87%), Positives = 51/56 (90%)
Frame = +2
Query: 382 ASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGE 437
ASDGKTYDAYILYPKT+GEGS SD D FVFK+LPEVLE Q GYKLFIYGRDDYVGE
Sbjct: 668 ASDGKTYDAYILYPKTVGEGSTSDCDIFVFKVLPEVLEKQCGYKLFIYGRDDYVGE 835
>ref|NM_008365.1| Mus musculus interleukin 18 receptor 1 (Il18r1), mRNA
Length = 2830
Score = 177 bits (449), Expect = 2e-42
Identities = 133/501 (26%), Positives = 226/501 (44%), Gaps = 9/501 (1%)
Frame = +3
Query: 57 TIIWYKNDSK---TPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT 113
T+ W+K + ++ R+ + L F P ++ED G Y V N + T
Sbjct: 540 TMRWFKGSASHEYRELNNRSSPRVTFHDHTLEFWPVEMEDEGTYISQVGND----RRNWT 707
Query: 114 VTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQW-YKNCKPLLL 172
+ V + + C+S + + + + + C +Y EL + W YKNCK +
Sbjct: 708 LNVTKRNKHSCFSDKLVTSRDVEVNKSLHITCKNPNY-----EELIQDTWLYKNCKEIS- 869
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
K ++++ G Y C S G +Y +T+ + I+ + P IL
Sbjct: 870 --------KTPRILKDAEFGDEGYYSCVFSVHHNGTRYNITKTVNITVIEGRSKVTPAIL 1025
Query: 233 SPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRK 292
P+ E + + G ++L C+ + DL YW + +DP + ED + ++ K
Sbjct: 1026 GPKCEKVGVELGKDVELNCSASLNKDDLFYWSIRKEDS--SDPNVQEDRKETTTWISEGK 1199
Query: 293 YTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYP-VPDFKNYLIGG----FII 347
L ++ + + C V N ++ L+ +PD ++ G ++
Sbjct: 1200 LHASKILRFQKITENYLNVLYNCTVANEEAIDTKSFVLVRKEIPDIPGHVFTGGVTVLVL 1379
Query: 348 LTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLD 407
+ VC V + ++KVD+VL+YR +DGKTYDA++ Y K + +
Sbjct: 1380 ASVAAVCIVILCVIYKVDLVLFYRRIAER--DETLTDGKTYDAFVSYLKECHPENKEEY- 1550
Query: 408 TFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWL 467
TF + LP VLE QFGYKL I+ RD G +E + ++KSRRLII+L + +
Sbjct: 1551 TFAVETLPRVLEKQFGYKLCIFERDVVPGGAVVEEIHSLIEKSRRLIIVLSQ---SYLTN 1721
Query: 468 GQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQ 527
G E + ++ AL++ IKI+L+E + +P S++ +K + V+ W D
Sbjct: 1722 GARRELESGLHEALVERKIKIILIEFTPASNITFLPPSLKLLK-SYRVLKWRAD----SP 1886
Query: 528 SAKTRFWKNLRYQMPAQRRSP 548
S +RFWKNL Y MPA+ P
Sbjct: 1887 SMNSRFWKNLVYLMPAKAVKP 1949
>gb|U43673.1|MMU43673 Mus musculus putative transmembrane receptor IL-1Rrp mRNA, complete
cds
Length = 2830
Score = 177 bits (449), Expect = 2e-42
Identities = 133/501 (26%), Positives = 226/501 (44%), Gaps = 9/501 (1%)
Frame = +3
Query: 57 TIIWYKNDSK---TPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT 113
T+ W+K + ++ R+ + L F P ++ED G Y V N + T
Sbjct: 540 TMRWFKGSASHEYRELNNRSSPRVTFHDHTLEFWPVEMEDEGTYISQVGND----RRNWT 707
Query: 114 VTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQW-YKNCKPLLL 172
+ V + + C+S + + + + + C +Y EL + W YKNCK +
Sbjct: 708 LNVTKRNKHSCFSDKLVTSRDVEVNKSLHITCKNPNY-----EELIQDTWLYKNCKEIS- 869
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
K ++++ G Y C S G +Y +T+ + I+ + P IL
Sbjct: 870 --------KTPRILKDAEFGDEGYYSCVFSVHHNGTRYNITKTVNITVIEGRSKVTPAIL 1025
Query: 233 SPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRK 292
P+ E + + G ++L C+ + DL YW + +DP + ED + ++ K
Sbjct: 1026 GPKCEKVGVELGKDVELNCSASLNKDDLFYWSIRKEDS--SDPNVQEDRKETTTWISEGK 1199
Query: 293 YTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYP-VPDFKNYLIGG----FII 347
L ++ + + C V N ++ L+ +PD ++ G ++
Sbjct: 1200 LHASKILRFQKITENYLNVLYNCTVANEEAIDTKSFVLVRKEIPDIPGHVFTGGVTVLVL 1379
Query: 348 LTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLD 407
+ VC V + ++KVD+VL+YR +DGKTYDA++ Y K + +
Sbjct: 1380 ASVAAVCIVILCVIYKVDLVLFYRRIAER--DETLTDGKTYDAFVSYLKECHPENKEEY- 1550
Query: 408 TFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWL 467
TF + LP VLE QFGYKL I+ RD G +E + ++KSRRLII+L + +
Sbjct: 1551 TFAVETLPRVLEKQFGYKLCIFERDVVPGGAVVEEIHSLIEKSRRLIIVLSQ---SYLTN 1721
Query: 468 GQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQ 527
G E + ++ AL++ IKI+L+E + +P S++ +K + V+ W D
Sbjct: 1722 GARRELESGLHEALVERKIKIILIEFTPASNITFLPPSLKLLK-SYRVLKWRAD----SP 1886
Query: 528 SAKTRFWKNLRYQMPAQRRSP 548
S +RFWKNL Y MPA+ P
Sbjct: 1887 SMNSRFWKNLVYLMPAKAVKP 1949
>gb|AF029213.1|AF029213 Homo sapiens IL-1 receptor accessory protein mRNA, complete cds
Length = 1740
Score = 166 bits (419), Expect = 7e-39
Identities = 144/529 (27%), Positives = 251/529 (47%), Gaps = 28/529 (5%)
Frame = +1
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 145 KCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 324
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHIA-GDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ P +L+I G + CP V
Sbjct: 325 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSPMKLPVHKLYIEYGIQRITCPNV 498
Query: 149 -SYFKDENNELPEVQWYKNC-KPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P + WY C K +NV G+ L+ ++ + G+Y C ++Y
Sbjct: 499 DGYF--PSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALIS--NNGNYTCVVTYPEN 666
Query: 207 GKQYPVTRVIQFITIDENKRD-RPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K PVI SP + + E +PG + + C V F +
Sbjct: 667 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 846
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT 320
V+W +G + + + + + H T+ + T L+I +V S+ + ++C ++
Sbjct: 847 VWWTIDGKKPD-DITIDVTINESISHSRTEDE-TRTQILSIKKVTSEDLKRSYVCHARSA 1020
Query: 321 --NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFL 378
+ ++A V+ P P + L GF +V + +Y V+ +++VL+YR
Sbjct: 1021KGEVAKAAKVKQKVPAPRYTVELACGFGATVLLVVILIVVYHVYWLEMVLFYRAHFG--T 1194
Query: 379 PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGED 438
DGK YD Y+ Y + E + FV L VLE +FGYKL I+ RD G
Sbjct: 1195DETILDGKEYDIYVSYARNAEE------EEFVLLTLRGVLENEFGYKLCIFDRDSLPGGI 1356
Query: 439 TIEVTNENVKKSRRLIIILVRD--MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI 496
+ T ++KSRRL+++L + + G L E + + N + I ++L++ + +
Sbjct: 1357VTDETLSFIQKSRRLLVVLSPNYVLQGTQAL---LELKAGLENMASRGNINVILVQYKAV 1527
Query: 497 QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQR 545
+ E ++ K VI W G+ + PQ RFWK L+ MP ++
Sbjct: 1528K--ETKVKELKRAKTVLTVIKWKGEKSKYPQG---RFWKQLQVAMPVKK 1659
>gb|U48592.1|RNU48592 Rattus norvegicus interleukin-1 receptor accessory protein (IL-1)
mRNA, complete cds
Length = 1862
Score = 166 bits (419), Expect = 7e-39
Identities = 145/529 (27%), Positives = 252/529 (47%), Gaps = 28/529 (5%)
Frame = +1
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 238 KCPLFEHFLKYNYSTAHSSGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 417
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHI-AGDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ P RL+I G ++ CP V
Sbjct: 418 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSPMRLPVHRLYIEQGIHNITCPNV 591
Query: 149 -SYFKDENNELPEVQWYKNCKPLL-LDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P V WYK C ++ NV G+ + V+ + G+Y C ++Y
Sbjct: 592 DGYF--PSSVKPSVTWYKGCTEIVNFHNVQPKGMNLSFFIPLVS--NNGNYTCVVTYLEN 759
Query: 207 GKQYPVTRVIQFITIDENK-RDRPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K P I SP + + E +PG + + C V F +
Sbjct: 760 GRLFHLTRTMTVKVVGSPKDAVPPHIYSPNDRVVYEKEPGEELVIPCKVYFSFIMDSHNE 939
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT 320
++W +G + + + P + V + ST+ + T L+I +V + + ++C +N
Sbjct: 940 IWWTIDGKKPD-DVPVDITIIESVSYSSTEDE-TRTQILSIKKVTPEDLKRNYVCHARNA 1113
Query: 321 --NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFL 378
++A V+ P + L GF +V + +Y V+ +++VL+YR
Sbjct: 1114EGEAEQAAKVKQKVIPPRYTVELACGFGATVFLVVVLIVVYHVYWLEMVLFYRAHFG--T 1287
Query: 379 PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGED 438
DGK YD Y+ Y + E + FV L VLE +FGYKL I+ RD + G
Sbjct: 1288DETILDGKEYDIYVSYARNAEE------EEFVLLTLRGVLENEFGYKLCIFDRDSFPGGI 1449
Query: 439 TIEVTNENVKKSRRLIIILVRD--MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI 496
+ T ++KSRRL+++L + + G L E + + N + I ++L++ + +
Sbjct: 1450VTDETLSFIQKSRRLLVVLSPNYVLQGTQAL---LELKAGLENMASRGNINVILVQYKAV 1620
Query: 497 QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQR 545
+D + ++ K VI W G+ + PQ RFWK L+ MP ++
Sbjct: 1621KDLK--VKELKRAKSVLTVIKWKGEKSKYPQG---RFWKQLQVAMPVKK 1752
>ref|NM_012968.1| Rattus norvegicus Interleukin 1 receptor accessory protein
(Il1rap), mRNA
Length = 1862
Score = 166 bits (419), Expect = 7e-39
Identities = 145/529 (27%), Positives = 252/529 (47%), Gaps = 28/529 (5%)
Frame = +1
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 238 KCPLFEHFLKYNYSTAHSSGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 417
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHI-AGDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ P RL+I G ++ CP V
Sbjct: 418 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSPMRLPVHRLYIEQGIHNITCPNV 591
Query: 149 -SYFKDENNELPEVQWYKNCKPLL-LDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P V WYK C ++ NV G+ + V+ + G+Y C ++Y
Sbjct: 592 DGYF--PSSVKPSVTWYKGCTEIVNFHNVQPKGMNLSFFIPLVS--NNGNYTCVVTYLEN 759
Query: 207 GKQYPVTRVIQFITIDENK-RDRPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K P I SP + + E +PG + + C V F +
Sbjct: 760 GRLFHLTRTMTVKVVGSPKDAVPPHIYSPNDRVVYEKEPGEELVIPCKVYFSFIMDSHNE 939
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT 320
++W +G + + + P + V + ST+ + T L+I +V + + ++C +N
Sbjct: 940 IWWTIDGKKPD-DVPVDITIIESVSYSSTEDE-TRTQILSIKKVTPEDLKRNYVCHARNA 1113
Query: 321 --NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFL 378
++A V+ P + L GF +V + +Y V+ +++VL+YR
Sbjct: 1114EGEAEQAAKVKQKVIPPRYTVELACGFGATVFLVVVLIVVYHVYWLEMVLFYRAHFG--T 1287
Query: 379 PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGED 438
DGK YD Y+ Y + E + FV L VLE +FGYKL I+ RD + G
Sbjct: 1288DETILDGKEYDIYVSYARNAEE------EEFVLLTLRGVLENEFGYKLCIFDRDSFPGGI 1449
Query: 439 TIEVTNENVKKSRRLIIILVRD--MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI 496
+ T ++KSRRL+++L + + G L E + + N + I ++L++ + +
Sbjct: 1450VTDETLSFIQKSRRLLVVLSPNYVLQGTQAL---LELKAGLENMASRGNINVILVQYKAV 1620
Query: 497 QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQR 545
+D + ++ K VI W G+ + PQ RFWK L+ MP ++
Sbjct: 1621KDLK--VKELKRAKSVLTVIKWKGEKSKYPQG---RFWKQLQVAMPVKK 1752
>ref|NM_008364.1| Mus musculus interleukin 1 receptor accessory protein (Il1rap),
mRNA
Length = 3355
Score = 166 bits (419), Expect = 7e-39
Identities = 146/529 (27%), Positives = 253/529 (47%), Gaps = 28/529 (5%)
Frame = +3
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 270 KCPLFEHFLKYNYSTAHSSGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 449
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHIA-GDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ FP +++I G + CP V
Sbjct: 450 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSAMRFPVHKMYIEHGIHKITCPNV 623
Query: 149 -SYFKDENNELPEVQWYKNCKPLL-LDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P V WYK C ++ NV G+ + V+ + G+Y C ++Y
Sbjct: 624 DGYF--PSSVKPSVTWYKGCTEIVDFHNVLPEGMNLSFFIPLVS--NNGNYTCVVTYPEN 791
Query: 207 GKQYPVTRVIQFITIDENKRD-RPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K P I SP + + E +PG + + C V F +
Sbjct: 792 GRLFHLTRTVTVKVVGSPKDALPPQIYSPNDRVVYEKEPGEELVIPCKVYFSFIMDSHNE 971
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT 320
V+W +G + + + + + V + ST+ + T L+I +V + R ++C +NT
Sbjct: 972 VWWTIDGKKPDDVTVDITIN-ESVSYSSTEDE-TRTQILSIKKVTPEDLRRNYVCHARNT 1145
Query: 321 --NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFL 378
++A V+ P + L GF +V + +Y V+ +++VL+YR
Sbjct: 1146KGEAEQAAKVKQKVIPPRYTVELACGFGATVFLVVVLIVVYHVYWLEMVLFYRAHFG--T 1319
Query: 379 PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGED 438
DGK YD Y+ Y + + E + FV L VLE +FGYKL I+ RD G
Sbjct: 1320DETILDGKEYDIYVSYARNVEE------EEFVLLTLRGVLENEFGYKLCIFDRDSLPGGI 1481
Query: 439 TIEVTNENVKKSRRLIIILVRD--MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI 496
+ T ++KSRRL+++L + + G L E + + N + I ++L++ + +
Sbjct: 1482VTDETLSFIQKSRRLLVVLSPNYVLQGTQAL---LELKAGLENMASRGNINVILVQYKAV 1652
Query: 497 QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQR 545
+D + ++ K VI W G+ + PQ RFWK L+ MP ++
Sbjct: 1653KDMK--VKELKRAKTVLTVIKWKGEKSKYPQG---RFWKQLQVAMPVKK 1784
>emb|X85999.1|MMIL1RACP M.musculus mRNA for interleukin 1 receptor accessory protein
Length = 3355
Score = 166 bits (419), Expect = 7e-39
Identities = 146/529 (27%), Positives = 253/529 (47%), Gaps = 28/529 (5%)
Frame = +3
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 270 KCPLFEHFLKYNYSTAHSSGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 449
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHIA-GDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ FP +++I G + CP V
Sbjct: 450 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSAMRFPVHKMYIEHGIHKITCPNV 623
Query: 149 -SYFKDENNELPEVQWYKNCKPLL-LDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P V WYK C ++ NV G+ + V+ + G+Y C ++Y
Sbjct: 624 DGYF--PSSVKPSVTWYKGCTEIVDFHNVLPEGMNLSFFIPLVS--NNGNYTCVVTYPEN 791
Query: 207 GKQYPVTRVIQFITIDENKRD-RPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K P I SP + + E +PG + + C V F +
Sbjct: 792 GRLFHLTRTVTVKVVGSPKDALPPQIYSPNDRVVYEKEPGEELVIPCKVYFSFIMDSHNE 971
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT 320
V+W +G + + + + + V + ST+ + T L+I +V + R ++C +NT
Sbjct: 972 VWWTIDGKKPDDVTVDITIN-ESVSYSSTEDE-TRTQILSIKKVTPEDLRRNYVCHARNT 1145
Query: 321 --NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFL 378
++A V+ P + L GF +V + +Y V+ +++VL+YR
Sbjct: 1146KGEAEQAAKVKQKVIPPRYTVELACGFGATVFLVVVLIVVYHVYWLEMVLFYRAHFG--T 1319
Query: 379 PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGED 438
DGK YD Y+ Y + + E + FV L VLE +FGYKL I+ RD G
Sbjct: 1320DETILDGKEYDIYVSYARNVEE------EEFVLLTLRGVLENEFGYKLCIFDRDSLPGGI 1481
Query: 439 TIEVTNENVKKSRRLIIILVRD--MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI 496
+ T ++KSRRL+++L + + G L E + + N + I ++L++ + +
Sbjct: 1482VTDETLSFIQKSRRLLVVLSPNYVLQGTQAL---LELKAGLENMASRGNINVILVQYKAV 1652
Query: 497 QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQR 545
+D + ++ K VI W G+ + PQ RFWK L+ MP ++
Sbjct: 1653KDMK--VKELKRAKTVLTVIKWKGEKSKYPQG---RFWKQLQVAMPVKK 1784
>ref|NM_002182.1| Homo sapiens interleukin 1 receptor accessory protein (IL1RAP),
mRNA
Length = 4724
Score = 166 bits (419), Expect = 7e-39
Identities = 144/529 (27%), Positives = 251/529 (47%), Gaps = 28/529 (5%)
Frame = +3
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 342 KCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 521
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHIA-GDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ P +L+I G + CP V
Sbjct: 522 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSPMKLPVHKLYIEYGIQRITCPNV 695
Query: 149 -SYFKDENNELPEVQWYKNC-KPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P + WY C K +NV G+ L+ ++ + G+Y C ++Y
Sbjct: 696 DGYF--PSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALIS--NNGNYTCVVTYPEN 863
Query: 207 GKQYPVTRVIQFITIDENKRD-RPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K PVI SP + + E +PG + + C V F +
Sbjct: 864 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 1043
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT 320
V+W +G + + + + + H T+ + T L+I +V S+ + ++C ++
Sbjct: 1044VWWTIDGKKPD-DITIDVTINESISHSRTEDE-TRTQILSIKKVTSEDLKRSYVCHARSA 1217
Query: 321 --NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFL 378
+ ++A V+ P P + L GF +V + +Y V+ +++VL+YR
Sbjct: 1218KGEVAKAAKVKQKVPAPRYTVELACGFGATVLLVVILIVVYHVYWLEMVLFYRAHFG--T 1391
Query: 379 PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGED 438
DGK YD Y+ Y + E + FV L VLE +FGYKL I+ RD G
Sbjct: 1392DETILDGKEYDIYVSYARNAEE------EEFVLLTLRGVLENEFGYKLCIFDRDSLPGGI 1553
Query: 439 TIEVTNENVKKSRRLIIILVRD--MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI 496
+ T ++KSRRL+++L + + G L E + + N + I ++L++ + +
Sbjct: 1554VTDETLSFIQKSRRLLVVLSPNYVLQGTQAL---LELKAGLENMASRGNINVILVQYKAV 1724
Query: 497 QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQR 545
+ E ++ K VI W G+ + PQ RFWK L+ MP ++
Sbjct: 1725K--ETKVKELKRAKTVLTVIKWKGEKSKYPQG---RFWKQLQVAMPVKK 1856
>dbj|AB006537.1|AB006537 Homo sapiens mRNA for interleukin 1 receptor accessory protein,
complete cds
Length = 4724
Score = 166 bits (419), Expect = 7e-39
Identities = 144/529 (27%), Positives = 251/529 (47%), Gaps = 28/529 (5%)
Frame = +3
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 342 KCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 521
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHIA-GDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ P +L+I G + CP V
Sbjct: 522 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSPMKLPVHKLYIEYGIQRITCPNV 695
Query: 149 -SYFKDENNELPEVQWYKNC-KPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P + WY C K +NV G+ L+ ++ + G+Y C ++Y
Sbjct: 696 DGYF--PSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALIS--NNGNYTCVVTYPEN 863
Query: 207 GKQYPVTRVIQFITIDENKRD-RPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K PVI SP + + E +PG + + C V F +
Sbjct: 864 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 1043
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT 320
V+W +G + + + + + H T+ + T L+I +V S+ + ++C ++
Sbjct: 1044VWWTIDGKKPD-DITIDVTINESISHSRTEDE-TRTQILSIKKVTSEDLKRSYVCHARSA 1217
Query: 321 --NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFL 378
+ ++A V+ P P + L GF +V + +Y V+ +++VL+YR
Sbjct: 1218KGEVAKAAKVKQKVPAPRYTVELACGFGATVLLVVILIVVYHVYWLEMVLFYRAHFG--T 1391
Query: 379 PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGED 438
DGK YD Y+ Y + E + FV L VLE +FGYKL I+ RD G
Sbjct: 1392DETILDGKEYDIYVSYARNAEE------EEFVLLTLRGVLENEFGYKLCIFDRDSLPGGI 1553
Query: 439 TIEVTNENVKKSRRLIIILVRD--MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI 496
+ T ++KSRRL+++L + + G L E + + N + I ++L++ + +
Sbjct: 1554VTDETLSFIQKSRRLLVVLSPNYVLQGTQAL---LELKAGLENMASRGNINVILVQYKAV 1724
Query: 497 QDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQR 545
+ E ++ K VI W G+ + PQ RFWK L+ MP ++
Sbjct: 1725K--ETKVKELKRAKTVLTVIKWKGEKSKYPQG---RFWKQLQVAMPVKK 1856
>gb|AC007248.3|AC007248 Homo sapiens BAC clone RP11-315O22 from 2, complete sequence
Length = 201535
Score = 137 bits (344), Expect = 4e-30
Identities = 67/118 (56%), Positives = 86/118 (72%)
Frame = -3
Query: 442 VTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEK 501
V +ENVK RRLI+I+V + GF L SEEQIA+Y+ALIQ+G+K++L+ELEKI+DY
Sbjct: 193868 VIDENVKLCRRLIVIVVPESLGFGLLKNLSEEQIAVYSALIQDGMKVILIELEKIEDYTV 193689
Query: 502 MPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTLDP 559
MP+SIQ+IKQKHG I W GDF E+ Q KT+FWK +RY MP +R P +LL P
Sbjct: 193688 MPESIQYIKQKHGAIRWHGDFTEQSQCMKTKFWKTVRYHMPPRRCRPFPPVQLLQHTP 193515
Score = 71.2 bits (173), Expect = 3e-10
Identities = 36/71 (50%), Positives = 45/71 (62%)
Frame = -1
Query: 378 LPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGE 437
L + SDGK YDAY+LYPK E +D V +LPEVLE Q GYKLFI+GRD++ G+
Sbjct: 195832 LSNSFSDGKLYDAYVLYPKPHKESQRHAVDALVLNILPEVLERQCGYKLFIFGRDEFPGQ 195653
Query: 438 DTIEVTNENVK 448
V +N K
Sbjct: 195652 GGF*VRCKNNK 195620
Score = 70.1 bits (170), Expect = 6e-10
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Frame = -2
Query: 438 DTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQ 497
D + N++KSRR I IL + E+++A++ ALIQ K++L+E+E +
Sbjct: 77241 DVVTAVETNIRKSRRHIFILTPQITHNKEFAY--EQEVALHCALIQNDAKVILIEMEALS 77068
Query: 498 DY-----EKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKH 552
+ E + DS+Q + + G I W D +S ++FWK++RYQMP + P
Sbjct: 77067 ELDMLQAEALQDSLQHLMKVQGTIKWREDHIANKRSLNSKFWKHVRYQMPVPSKIPRKAS 76888
Query: 553 RLLTL 557
L L
Sbjct: 76887 SLTPL 76873
Score = 66.2 bits (160), Expect = 8e-09
Identities = 42/124 (33%), Positives = 67/124 (53%), Gaps = 2/124 (1%)
Frame = -3
Query: 447 VKKSRRLIIILVRDMGGFSWLGQSSEEQI--AIYNALIQEGIKIVLLELEKIQDYEKMPD 504
++KSRRLII+L + S++ ++ ++ AL++ IKI+L+E + D+ +P
Sbjct: 32219 IEKSRRLIIVLSK-----SYMSNEVRYELESGLHEALVERKIKIILIEFTPVTDFTFLPQ 32055
Query: 505 SIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTLDPVRDTK 564
S++ +K H V+ W D + S +RFWKNL Y MPA+ T+ P RD
Sbjct: 32054 SLKLLKS-HRVLKWKAD---KSLSYNSRFWKNLLYLMPAK-----------TVKPGRDEP 31920
Query: 565 EKLP 568
E LP
Sbjct: 31919 EVLP 31908
Score = 56.2 bits (134), Expect = 8e-06
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = -2
Query: 383 SDGKTYDAYILYPKTLGEGS--FSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGE 437
SDGK YDAY++YP+ + S ++ FV ++LP+VLE + GY L IYGRD GE
Sbjct: 79701 SDGKLYDAYVVYPRNYKSSTDGASRVEHFVHQILPDVLENKCGYTLCIYGRDMLPGE 79531
Score = 46.6 bits (109), Expect = 0.007
Identities = 24/49 (48%), Positives = 31/49 (62%)
Frame = -2
Query: 384 DGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRD 432
DGKTYDA++ Y K + + TF ++LP VLE FGYKL I+ RD
Sbjct: 34308 DGKTYDAFVSYLKECRPENGEE-HTFAVEILPRVLEKHFGYKLCIFERD 34165
Score = 42.4 bits (98), Expect = 0.12
Identities = 23/64 (35%), Positives = 32/64 (49%)
Frame = -2
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + T+ WY + + I +R+ + L F+PA V DSG Y
Sbjct: 89916 NEALIVRCPRQGKPSY--TVDWYYSQTNKSIPTQERNRVFASGQLLKFLPAAVADSGIYT 89743
Query: 99 CIVR 102
CIVR
Sbjct: 89742 CIVR 89731
>gb|U64092.1|CGU64092 Cercopithecidae gen. sp. type II interleukin-1 receptor mRNA,
complete cds
Length = 1257
Score = 133 bits (335), Expect = 4e-29
Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 12/305 (3%)
Frame = +3
Query: 45 KCPLTPNKMHGDT-----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYC 99
+CP P ++ + W+KNDS + + ++R+ Q+ LW +PA EDSG Y C
Sbjct: 165 RCPQVPYQLWASVSPHINLTWHKNDSARMVPGEEETRMWAQDGALWLLPALQEDSGTYIC 344
Query: 100 IVRNSTYCLKTKVTVTVLEN-DPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNEL 158
RN++YC K + + V EN D L + ++PQ L ++ G LVCP + F + +
Sbjct: 345 TTRNASYCDKVSIELRVFENTDASLPF---ISYPQILTLSTFGVLVCPDLREFTRDKTD- 512
Query: 159 PEVQWYKNCKPLLLDNVSFFGVK--DKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVI 216
++QWYK+ PL DN F V+ LLV +VA E G Y C +++ G+QY +TR I
Sbjct: 513 GKIQWYKDFLPLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRNI 692
Query: 217 QFITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TG-QFSDLVYWKWNGSEIEW 272
+ + + PVI+SP +TI A GS + + C V TG + +++W N + +E
Sbjct: 693 ELRIKKKKEETIPVIISPL-KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHVES 869
Query: 273 NDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIY 332
P + S + + L V + F C V+NT F++ +
Sbjct: 870 AYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRKDLNMVFKCFVRNTMGFQTLRTTVKE 1049
Query: 333 PVPDF 337
P P F
Sbjct: 1050PPPTF 1064
>ref|NM_003853.1| Homo sapiens interleukin 18 receptor accessory protein (IL18RAP),
mRNA
Length = 2681
Score = 132 bits (332), Expect = 9e-29
Identities = 137/520 (26%), Positives = 228/520 (43%), Gaps = 25/520 (4%)
Frame = +1
Query: 60 WYKNDSK-TPISADRDSRIH--QQNEHLWFVPAKVEDSGYYYCIVR--NSTYCLKTKVTV 114
WY+ S P+ R S H Q L F+ V +SG Y C + S Y + V +
Sbjct: 733 WYQQPSNGDPLEDIRKSYPHIIQDKCTLHFLTPGVNNSGSYICRPKMIKSPYDVACCVKM 912
Query: 115 TVLENDPGLCYSTQ--ATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
+LE P S + A+ Q L + GS+ CP +S D + P V WYKN K L +
Sbjct: 913 -ILEVKPQTNASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQS--PAVTWYKNGKLLSV 1083
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
+ ++++V V + H+G Y+C + + + V V+Q TI + + +P IL
Sbjct: 1084 ER------SNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKLKPDIL 1245
Query: 233 SPRNETIEADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPS 288
P +T+E + G + + C F+ ++ W S++EW + S
Sbjct: 1246 DPVEDTLEVELGKPLTISCKARFGFERVFNPVIKWYIKDSDLEWE----VSVPEAKSIKS 1413
Query: 289 TKRKYTLITTLNISEVKSQFYRYPFICVVKNT--------NIFESAHVQLIYPVPDFKNY 340
T + + + + +V + R F+C V+N+ + E V L+Y
Sbjct: 1414 TLKDEIIERNIILEKVTQRDLRRKFVCFVQNSIGNTTQSVQLKEKRGVVLLY-------I 1572
Query: 341 LIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPK---- 396
L+G L A + +Y+ + ++IVL YR S D K +DA++ Y K
Sbjct: 1573 LLGTIGTLVAVLAASALLYRHW-IEIVLLYRTYQS--KDQTLGDKKDFDAFVSYAKWSSF 1743
Query: 397 -TLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLII 455
+ S S+ + L P+VLE ++GY L + RD G E +K+SRR I
Sbjct: 1744 PSEATSSLSE-EHLALSLFPDVLENKYGYSLCLLERDVAPGGVYAEDIVSIIKRSRRGIF 1920
Query: 456 ILVRD-MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHG 514
IL + + G S E Q A+ AL + +K++L++ Q+ E +P ++ +
Sbjct: 1921 ILSPNYVNGPSIF----ELQAAVNLALDDQTLKLILIKFCYFQEPESLPHLVKKALRVLP 2088
Query: 515 VICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRL 554
+ W G P S RFW +RY MP + + ++L
Sbjct: 2089 TVTWRGLKSVPPNS---RFWAKMRYHMPVKNSQGFTWNQL 2199
>gb|AF077346.1|AF077346 Homo sapiens interleukin-18 receptor accessory protein-like mRNA,
complete cds
Length = 2681
Score = 132 bits (332), Expect = 9e-29
Identities = 137/520 (26%), Positives = 228/520 (43%), Gaps = 25/520 (4%)
Frame = +1
Query: 60 WYKNDSK-TPISADRDSRIH--QQNEHLWFVPAKVEDSGYYYCIVR--NSTYCLKTKVTV 114
WY+ S P+ R S H Q L F+ V +SG Y C + S Y + V +
Sbjct: 733 WYQQPSNGDPLEDIRKSYPHIIQDKCTLHFLTPGVNNSGSYICRPKMIKSPYDVACCVKM 912
Query: 115 TVLENDPGLCYSTQ--ATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
+LE P S + A+ Q L + GS+ CP +S D + P V WYKN K L +
Sbjct: 913 -ILEVKPQTNASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQS--PAVTWYKNGKLLSV 1083
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
+ ++++V V + H+G Y+C + + + V V+Q TI + + +P IL
Sbjct: 1084 ER------SNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKLKPDIL 1245
Query: 233 SPRNETIEADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPS 288
P +T+E + G + + C F+ ++ W S++EW + S
Sbjct: 1246 DPVEDTLEVELGKPLTISCKARFGFERVFNPVIKWYIKDSDLEWE----VSVPEAKSIKS 1413
Query: 289 TKRKYTLITTLNISEVKSQFYRYPFICVVKNT--------NIFESAHVQLIYPVPDFKNY 340
T + + + + +V + R F+C V+N+ + E V L+Y
Sbjct: 1414 TLKDEIIERNIILEKVTQRDLRRKFVCFVQNSIGNTTQSVQLKEKRGVVLLY-------I 1572
Query: 341 LIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPK---- 396
L+G L A + +Y+ + ++IVL YR S D K +DA++ Y K
Sbjct: 1573 LLGTIGTLVAVLAASALLYRHW-IEIVLLYRTYQS--KDQTLGDKKDFDAFVSYAKWSSF 1743
Query: 397 -TLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLII 455
+ S S+ + L P+VLE ++GY L + RD G E +K+SRR I
Sbjct: 1744 PSEATSSLSE-EHLALSLFPDVLENKYGYSLCLLERDVAPGGVYAEDIVSIIKRSRRGIF 1920
Query: 456 ILVRD-MGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHG 514
IL + + G S E Q A+ AL + +K++L++ Q+ E +P ++ +
Sbjct: 1921 ILSPNYVNGPSIF----ELQAAVNLALDDQTLKLILIKFCYFQEPESLPHLVKKALRVLP 2088
Query: 515 VICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRL 554
+ W G P S RFW +RY MP + + ++L
Sbjct: 2089 TVTWRGLKSVPPNS---RFWAKMRYHMPVKNSQGFTWNQL 2199
>gb|U74649.1|HSU74649 Human interleukin-1 receptor type II mRNA, complete cds
Length = 1264
Score = 130 bits (328), Expect = 3e-28
Identities = 90/292 (30%), Positives = 143/292 (48%), Gaps = 11/292 (3%)
Frame = +3
Query: 45 KCPLTPNKMHGDT-----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYC 99
+CP P + + W+KNDS + + ++R+ Q+ LW +PA EDSG Y C
Sbjct: 180 RCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVC 359
Query: 100 IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP 159
RN++YC K + V EN + ++PQ L ++ G LVCP +S F + ++
Sbjct: 360 TTRNASYCDKMSIEFRVFENTD--AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV- 530
Query: 160 EVQWYKNCKPLLLDNVSFFGVK--DKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQ 217
++QWY++ L DN F V+ LLV +VA+E G Y C +++ G+QY +TR I+
Sbjct: 531 KIQWYRDSLLLDKDNEKFLSVRGTTHLLVHDVAQEDAGYYRCVLTFAHEGQQYNITRSIE 710
Query: 218 FITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TG-QFSDLVYWKWNGSEIEWN 273
+ + PVI+SP +TI A GS + + C V TG + +++W N + IE
Sbjct: 711 LRIKKKKEETIPVIISPL-KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESA 887
Query: 274 DPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFES 325
P + S + + L V + F CVV NT F++
Sbjct: 888 YPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT 1043
>emb|X59770.1|HSIL1R2II H.sapiens IL-1R2 mRNA for type II interleukin-1 receptor, (cell
line CB23)
Length = 1308
Score = 130 bits (328), Expect = 3e-28
Identities = 91/292 (31%), Positives = 143/292 (48%), Gaps = 11/292 (3%)
Frame = +2
Query: 45 KCPLTPNKMHGDT-----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYC 99
+CP P + + W+KNDS + + ++R+ Q+ LW +PA EDSG Y C
Sbjct: 206 RCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVC 385
Query: 100 IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP 159
RN++YC K + + V EN + ++PQ L ++ G LVCP +S F + ++
Sbjct: 386 TTRNASYCDKMSIELRVFENTD--AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV- 556
Query: 160 EVQWYKNCKPLLLDNVSFFGVK--DKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQ 217
++QWYK+ L DN F V+ LLV +VA E G Y C +++ G+QY +TR I+
Sbjct: 557 KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 736
Query: 218 FITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TG-QFSDLVYWKWNGSEIEWN 273
+ + PVI+SP +TI A GS + + C V TG + +++W N + IE
Sbjct: 737 LRIKKKKEETIPVIISPL-KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESA 913
Query: 274 DPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFES 325
P + S + + L V + F CVV NT F++
Sbjct: 914 YPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT 1069
>ref|NM_004633.1| Homo sapiens interleukin 1 receptor, type II (IL1R2), mRNA
Length = 1286
Score = 130 bits (328), Expect = 3e-28
Identities = 91/292 (31%), Positives = 143/292 (48%), Gaps = 11/292 (3%)
Frame = +2
Query: 45 KCPLTPNKMHGDT-----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYC 99
+CP P + + W+KNDS + + ++R+ Q+ LW +PA EDSG Y C
Sbjct: 206 RCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVC 385
Query: 100 IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP 159
RN++YC K + + V EN + ++PQ L ++ G LVCP +S F + ++
Sbjct: 386 TTRNASYCDKMSIELRVFENTD--AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV- 556
Query: 160 EVQWYKNCKPLLLDNVSFFGVK--DKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQ 217
++QWYK+ L DN F V+ LLV +VA E G Y C +++ G+QY +TR I+
Sbjct: 557 KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 736
Query: 218 FITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TG-QFSDLVYWKWNGSEIEWN 273
+ + PVI+SP +TI A GS + + C V TG + +++W N + IE
Sbjct: 737 LRIKKKKEETIPVIISPL-KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESA 913
Query: 274 DPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFES 325
P + S + + L V + F CVV NT F++
Sbjct: 914 YPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT 1069
>gb|U64093.1|CGU64093 Cercopithecidae gen. sp. soluble type II interleukin-1 receptor
mRNA, complete cds
Length = 1084
Score = 129 bits (323), Expect = 1e-27
Identities = 81/239 (33%), Positives = 128/239 (52%), Gaps = 12/239 (5%)
Frame = +3
Query: 45 KCPLTPNKMHGDT-----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYC 99
+CP P ++ + W+KNDS + + ++R+ Q+ LW +PA EDSG Y C
Sbjct: 165 RCPQVPYQLWASVSPHINLTWHKNDSARMVPGEEETRMWAQDGALWLLPALQEDSGTYIC 344
Query: 100 IVRNSTYCLKTKVTVTVLEN-DPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNEL 158
RN++YC K + + V EN D L + ++PQ L ++ G LVCP + F + +
Sbjct: 345 TTRNASYCDKVSIELRVFENTDASLPF---ISYPQILTLSTFGVLVCPDLREFTRDKTD- 512
Query: 159 PEVQWYKNCKPLLLDNVSFFGVK--DKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVI 216
++QWYK+ PL DN F V+ LLV +VA E G Y C +++ G+QY +TR I
Sbjct: 513 GKIQWYKDFLPLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRNI 692
Query: 217 QFITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TG-QFSDLVYWKWNGSEIE 271
+ + + PVI+SP +TI A GS + + C V TG + +++W N + +E
Sbjct: 693 ELRIKKKKEETIPVIISPL-KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHVE 866
>gb|U64094.1|HSU64094 Human soluble type II interleukin-1 receptor mRNA, complete cds
Length = 1037
Score = 128 bits (322), Expect = 1e-27
Identities = 80/238 (33%), Positives = 126/238 (52%), Gaps = 11/238 (4%)
Frame = +2
Query: 45 KCPLTPNKMHGDT-----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYC 99
+CP P + + W+KNDS + + ++R+ Q+ LW +PA EDSG Y C
Sbjct: 206 RCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVC 385
Query: 100 IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP 159
RN++YC K + + V EN + ++PQ L ++ G LVCP +S F + ++
Sbjct: 386 TTRNASYCDKMSIELRVFENTD--AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV- 556
Query: 160 EVQWYKNCKPLLLDNVSFFGVK--DKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQ 217
++QWYK+ L DN F V+ LLV +VA E G Y C +++ G+QY +TR I+
Sbjct: 557 KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 736
Query: 218 FITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TG-QFSDLVYWKWNGSEIE 271
+ + PVI+SP +TI A GS + + C V TG + +++W N + IE
Sbjct: 737 LRIKKKKEETIPVIISPL-KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 907
>dbj|AB033415.1|AB033415 Equus caballus IL-1RII mRNA for interleukin-1 receptor type II,
complete cds
Length = 1347
Score = 122 bits (306), Expect = 9e-26
Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 8/278 (2%)
Frame = +2
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
+ W KNDS + + ++R+ Q+ LW +PA DSG Y C VRN++YC + + V
Sbjct: 326 VTWRKNDSTRMVPEEEETRMWVQDNALWILPALQGDSGTYICTVRNASYCYEMSTELRVF 505
Query: 118 ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSF 177
E T ++PQ L ++ G LVCP +S F ++ EVQWYK+ L DN F
Sbjct: 506 EKTEAAL--TYISYPQILTLSTSGLLVCPELSEFTRNKTDV-EVQWYKDSVLLDQDNEKF 676
Query: 178 FGV--KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPR 235
V +LLV+NV+ E G Y C M+ G + +TR I+ + PVI+SPR
Sbjct: 677 LSVAGPPRLLVQNVSMEDAGYYSCVMTLIHNGTRVNITRNIELRVQKRREETVPVIVSPR 856
Query: 236 NETIEADPGSMIQLICNV----TGQFSDLVYWKWNGSEIE--WNDPFLAEDYQFVEHPST 289
+TI A GS + + C V Q++ ++W N + I+ + + E Q E+
Sbjct: 857 -QTILASLGSRLIIPCKVFLGAGTQWTTDLWWMANNTNIDIAYRGGRVTEG-QRQEYSEN 1030
Query: 290 KRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAH 327
Y + L V + F CV NT F++ H
Sbjct: 1031NENY-IEVPLIFDPVIREDLNTDFKCVTYNTRSFQTLH 1141
>emb|AJ277831.1|MMU277831 Mus musculus mRNA for IL1RAPL-2 related protein
Length = 2028
Score = 120 bits (302), Expect = 3e-25
Identities = 79/283 (27%), Positives = 141/283 (48%), Gaps = 7/283 (2%)
Frame = +3
Query: 55 GDTIIWYKN--DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKV 112
G ++WY+N D + PI + R+ ++ + +WF A+ +DSG+Y C++RNSTYC+K +
Sbjct: 1089 GLRLMWYRNKGDLEEPIIFS-EVRMSKEEDAIWFHSAEEQDSGFYTCVLRNSTYCMKVSM 1265
Query: 113 TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
++TV EN+ GLCY+++ + ++ + + CP + FK + E P+V WYK CKP +
Sbjct: 1266 SLTVAENESGLCYNSRIRYLEKSEVTKRKEISCPDMDDFKKSDQE-PDVVWYKECKPKMW 1442
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI- 231
++ + LL++ V EE G+Y C + Y GK T ++ + +K +P+
Sbjct: 1443 RSI-IIQKGNALLIQEVQEEDGGNYTCELKY--EGKLVRRTTELKVTALLTDKPPKPLFP 1613
Query: 232 LSPRNETIEADPGSMIQLICNV----TGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHP 287
+ + I+ G + + C +G+ ++YW IE + E +
Sbjct: 1614 MENQPSVIDVQLGKPLNIPCKAFFGFSGESGPMIYWMKGEKFIEELAGHIREGEIRLLKE 1793
Query: 288 STKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQL 330
K +T + S V++ Y C V+N N + A V L
Sbjct: 1794 HLGEKEVELTLIFDSVVEADLANY--TCHVENRNGRKHASVLL 1916
>ref|NM_010553.1| Mus musculus interleukin 18 receptor accessory protein (Il18rap),
mRNA
Length = 2499
Score = 118 bits (296), Expect = 1e-24
Identities = 130/505 (25%), Positives = 225/505 (43%), Gaps = 20/505 (3%)
Frame = +2
Query: 60 WYKND-SKTPISADRDSRIHQQNEHLWFVPAKVEDSGY-YYCIVR-----NSTYCLKTKV 112
WY S +P+ + H Q+E + + A +S + Y C R + C+KT +
Sbjct: 689 WYMQPRSGSPLEEISRNSPHMQSEGMLHILAPQTNSIWSYICRPRIRSPQDMACCIKTVL 868
Query: 113 TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
V N C +T A Q L + GS+ CP +S D + PE+ WYK+ + LL
Sbjct: 869 EVKPQRNVS--CGNT-AQDEQVLLLGSTGSIHCPSLSCQSDVQS--PEMTWYKDGR-LLP 1030
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
++ K+ + + ++ ++G Y+C + + + V V++ TI ++ +P IL
Sbjct: 1031 EHK-----KNPIEMADIYVFNQGLYVCDYTQSDNVSSWTVRAVVKVRTIGKDINVKPEIL 1195
Query: 233 SPRNETIEADPGSMIQLICNVTGQFSDL----VYWKWNGSEIEWNDPFLAEDYQFVEHPS 288
P +T++ + G + L C V F L + W S EW E S
Sbjct: 1196 DPITDTLDVELGKPLTLPCRVQFGFQRLSKPVIKWYVKESTQEWEMSVFEEK----RIQS 1363
Query: 289 TKRKYTLITTLNISEVKSQFYRYPFICVVKNT--NIFESAHVQLIYPVPDFKNYLIGGFI 346
T + + T+ + EV + F+C +N+ N + ++ V F L+G +
Sbjct: 1364 TFKNEVIERTIFLREVTQRDLSRKFVCFAQNSIGNTTRTIRLRKKEEVV-FVYILLGTAL 1540
Query: 347 ILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILY-----PKTLGEG 401
+L +V +Y + +++VL R + D K +DA++ Y P+T G
Sbjct: 1541 MLVGVLVAAAFLYWYW-IEVVLLCRTYKNK--DETLGDKKEFDAFVSYSNWSSPETDAVG 1711
Query: 402 SFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDM 461
S S+ + L PEVLE +GY+L + RD G + +KKSRR I IL
Sbjct: 1712 SLSE-EHLALNLFPEVLEDTYGYRLCLLDRDVTPGGVYADDIVSIIKKSRRGIFIL---- 1876
Query: 462 GGFSWLG--QSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWS 519
S+L + E Q A+ AL+ + +K++L++ Q+ E +P ++ + + W
Sbjct: 1877 -SPSYLNGPRVFELQAAVNLALVDQTLKLILIKFCSFQEPESLPYLVKKALRVLPTVTWK 2053
Query: 520 GDFQERPQSAKTRFWKNLRYQMPAQ 544
G + A +RFW +RY MP +
Sbjct: 2054 G---LKSVHASSRFWTQIRYHMPVK 2119
>gb|AF077347.1|AF077347 Mus musculus interleukin-18 receptor accessory protein-like mRNA,
complete cds
Length = 2499
Score = 118 bits (296), Expect = 1e-24
Identities = 130/505 (25%), Positives = 225/505 (43%), Gaps = 20/505 (3%)
Frame = +2
Query: 60 WYKND-SKTPISADRDSRIHQQNEHLWFVPAKVEDSGY-YYCIVR-----NSTYCLKTKV 112
WY S +P+ + H Q+E + + A +S + Y C R + C+KT +
Sbjct: 689 WYMQPRSGSPLEEISRNSPHMQSEGMLHILAPQTNSIWSYICRPRIRSPQDMACCIKTVL 868
Query: 113 TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
V N C +T A Q L + GS+ CP +S D + PE+ WYK+ + LL
Sbjct: 869 EVKPQRNVS--CGNT-AQDEQVLLLGSTGSIHCPSLSCQSDVQS--PEMTWYKDGR-LLP 1030
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
++ K+ + + ++ ++G Y+C + + + V V++ TI ++ +P IL
Sbjct: 1031 EHK-----KNPIEMADIYVFNQGLYVCDYTQSDNVSSWTVRAVVKVRTIGKDINVKPEIL 1195
Query: 233 SPRNETIEADPGSMIQLICNVTGQFSDL----VYWKWNGSEIEWNDPFLAEDYQFVEHPS 288
P +T++ + G + L C V F L + W S EW E S
Sbjct: 1196 DPITDTLDVELGKPLTLPCRVQFGFQRLSKPVIKWYVKESTQEWEMSVFEEK----RIQS 1363
Query: 289 TKRKYTLITTLNISEVKSQFYRYPFICVVKNT--NIFESAHVQLIYPVPDFKNYLIGGFI 346
T + + T+ + EV + F+C +N+ N + ++ V F L+G +
Sbjct: 1364 TFKNEVIERTIFLREVTQRDLSRKFVCFAQNSIGNTTRTIRLRKKEEVV-FVYILLGTAL 1540
Query: 347 ILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILY-----PKTLGEG 401
+L +V +Y + +++VL R + D K +DA++ Y P+T G
Sbjct: 1541 MLVGVLVAAAFLYWYW-IEVVLLCRTYKNK--DETLGDKKEFDAFVSYSNWSSPETDAVG 1711
Query: 402 SFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDM 461
S S+ + L PEVLE +GY+L + RD G + +KKSRR I IL
Sbjct: 1712 SLSE-EHLALNLFPEVLEDTYGYRLCLLDRDVTPGGVYADDIVSIIKKSRRGIFIL---- 1876
Query: 462 GGFSWLG--QSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWS 519
S+L + E Q A+ AL+ + +K++L++ Q+ E +P ++ + + W
Sbjct: 1877 -SPSYLNGPRVFELQAAVNLALVDQTLKLILIKFCSFQEPESLPYLVKKALRVLPTVTWK 2053
Query: 520 GDFQERPQSAKTRFWKNLRYQMPAQ 544
G + A +RFW +RY MP +
Sbjct: 2054 G---LKSVHASSRFWTQIRYHMPVK 2119
>ref|NM_053953.1| Rattus norvegicus interleukin 1 receptor, type II (Il1r2), mRNA
Length = 1380
Score = 114 bits (286), Expect = 2e-23
Identities = 103/370 (27%), Positives = 160/370 (42%), Gaps = 24/370 (6%)
Frame = +1
Query: 43 IRKCPLTPNKMHGDT-------IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSG 95
+ +CPL P H DT + W K+DS I D + R+ +++ LW +PA +DSG
Sbjct: 304 VLRCPLVP---HSDTSSSSRSLLTWSKSDSSQLIPGD-EPRMWVKDDTLWVLPAVQQDSG 471
Query: 96 YYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-----QRLHIAGDGSLVCPYVSY 150
Y C RN+++C + + + V +N T+A+FP Q ++ G LVCP +
Sbjct: 472 TYICTFRNASHCEQMSLELKVFKN-------TEASFPLVSYLQISALSSTGLLVCPDLKE 630
Query: 151 FKDENNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAEEHRGDYICRMSYTFRGK 208
F + ++QWYK L N F D +LL+ N + G Y C M++T+ GK
Sbjct: 631 FISSRTD-GKIQWYKGSILLDKGNKKFLSAGDPTRLLISNTSMGDAGYYRCVMTFTYEGK 807
Query: 209 QYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TGQFSDLVYWKW 265
+Y +TR I+ PVI+SP ETI A GS + + C V TG S+ + W W
Sbjct: 808 EYNITRNIELRVKGITTEPIPVIISPL-ETIPASLGSRLIVPCKVFLGTGTSSNTIVW-W 981
Query: 266 NGSEIEWNDPFLAEDY------QFVEHPSTKRKYTLI-TTLNISEVKSQFYRYPFICVVK 318
N F++ Y + + H ++ + +L V + F CV
Sbjct: 982 MA-----NSTFISVAYPRGRVTEGLHHQYSENDENYVEVSLIFDPVTKEDLNTDFKCVAT 1146
Query: 319 NTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFL 378
N F+S H V + + G + +++ V +W R C
Sbjct: 1147NPRSFQSLHT----TVKEVSSTFSWGIALAPLSLIILVV--------GAIWIRRRC---- 1278
Query: 379 PSKASDGKTY 388
K GKTY
Sbjct: 1279--KRQAGKTY 1302
>emb|Z22812.1|RNINL1R2A R.norvegicus interleukin-1 receptor type 2
Length = 1380
Score = 114 bits (286), Expect = 2e-23
Identities = 103/370 (27%), Positives = 160/370 (42%), Gaps = 24/370 (6%)
Frame = +1
Query: 43 IRKCPLTPNKMHGDT-------IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSG 95
+ +CPL P H DT + W K+DS I D + R+ +++ LW +PA +DSG
Sbjct: 304 VLRCPLVP---HSDTSSSSRSLLTWSKSDSSQLIPGD-EPRMWVKDDTLWVLPAVQQDSG 471
Query: 96 YYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-----QRLHIAGDGSLVCPYVSY 150
Y C RN+++C + + + V +N T+A+FP Q ++ G LVCP +
Sbjct: 472 TYICTFRNASHCEQMSLELKVFKN-------TEASFPLVSYLQISALSSTGLLVCPDLKE 630
Query: 151 FKDENNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAEEHRGDYICRMSYTFRGK 208
F + ++QWYK L N F D +LL+ N + G Y C M++T+ GK
Sbjct: 631 FISSRTD-GKIQWYKGSILLDKGNKKFLSAGDPTRLLISNTSMGDAGYYRCVMTFTYEGK 807
Query: 209 QYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TGQFSDLVYWKW 265
+Y +TR I+ PVI+SP ETI A GS + + C V TG S+ + W W
Sbjct: 808 EYNITRNIELRVKGITTEPIPVIISPL-ETIPASLGSRLIVPCKVFLGTGTSSNTIVW-W 981
Query: 266 NGSEIEWNDPFLAEDY------QFVEHPSTKRKYTLI-TTLNISEVKSQFYRYPFICVVK 318
N F++ Y + + H ++ + +L V + F CV
Sbjct: 982 MA-----NSTFISVAYPRGRVTEGLHHQYSENDENYVEVSLIFDPVTKEDLNTDFKCVAT 1146
Query: 319 NTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFL 378
N F+S H V + + G + +++ V +W R C
Sbjct: 1147NPRSFQSLHT----TVKEVSSTFSWGIALAPLSLIILVV--------GAIWIRRRC---- 1278
Query: 379 PSKASDGKTY 388
K GKTY
Sbjct: 1279--KRQAGKTY 1302
>gb|BC012346.1|BC012346 Homo sapiens, Similar to interleukin 1 receptor, type II, clone
IMAGE:4562827, mRNA
Length = 1430
Score = 112 bits (280), Expect = 1e-22
Identities = 64/190 (33%), Positives = 101/190 (52%), Gaps = 7/190 (3%)
Frame = +2
Query: 45 KCPLTPNKMHGDT-----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYC 99
+CP P + + W+KNDS + + ++R+ Q+ LW +PA EDSG Y C
Sbjct: 326 RCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVC 505
Query: 100 IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP 159
RN++YC K + + V EN + ++PQ L ++ G LVCP +S F + ++
Sbjct: 506 TTRNASYCDKMSIELRVFENTD--AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV- 676
Query: 160 EVQWYKNCKPLLLDNVSFFGVK--DKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQ 217
++QWYK+ L DN F V+ LLV +VA E G Y C +++ G+QY +TR I+
Sbjct: 677 KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 856
Query: 218 FITIDENKRD 227
+ +RD
Sbjct: 857 LRIKKKKRRD 886
>emb|X59769.1|MMIL1R2 Mouse Il-1r2 mRNA for type II interleukin-1 receptor, (cell line
70Z/3)
Length = 1360
Score = 106 bits (264), Expect = 7e-21
Identities = 88/306 (28%), Positives = 138/306 (44%), Gaps = 21/306 (6%)
Frame = +3
Query: 43 IRKCPLTPNKMHGDT----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
+ +CPL P+ + + W K DS I D + R+ + LW +PA +DSG Y
Sbjct: 273 VLRCPLAPHSDISSSSHSFLTWSKLDSSQLIPRD-EPRMWVKGNILWILPAVQQDSGTYI 449
Query: 99 CIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-----QRLHIAGDGSLVCPYVSYFKD 153
C RN+++C + V + V +N T+A+ P Q ++ G LVCP + F
Sbjct: 450 CTFRNASHCEQMSVELKVFKN-------TEASLPHVSYLQISALSTTGLLVCPDLKEFIS 608
Query: 154 ENNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAEEHRGDYICRMSYTFRGKQYP 211
N + ++QWYK L N F D +LL+ N + + G Y C M++T+ G++Y
Sbjct: 609 SNAD-GKIQWYKGAILLDKGNKEFLSAGDPTRLLISNTSMDDAGYYRCVMTFTYNGQEYN 785
Query: 212 VTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TGQFSDLVYWKWNGS 268
+TR I+ PVI+SP ETI A GS + + C V TG S+ + W W
Sbjct: 786 ITRNIELRVKGTTTEPIPVIISPL-ETIPASLGSRLIVPCKVFLGTGTSSNTIVW-WLA- 956
Query: 269 EIEWNDPFLAEDY------QFVEHPSTKRKYTLI-TTLNISEVKSQFYRYPFICVVKNTN 321
N F++ Y + + H ++ + +L V + F CV N
Sbjct: 957 ----NSTFISAAYPRGRVTEGLHHQYSENDENYVEVSLIFDPVTREDLHTDFKCVASNPR 1124
Query: 322 IFESAH 327
+S H
Sbjct: 1125SSQSLH 1142
>ref|NM_010555.1| Mus musculus interleukin 1 receptor, type II (Il1r2), mRNA
Length = 1341
Score = 106 bits (264), Expect = 7e-21
Identities = 88/306 (28%), Positives = 138/306 (44%), Gaps = 21/306 (6%)
Frame = +3
Query: 43 IRKCPLTPNKMHGDT----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
+ +CPL P+ + + W K DS I D + R+ + LW +PA +DSG Y
Sbjct: 273 VLRCPLAPHSDISSSSHSFLTWSKLDSSQLIPRD-EPRMWVKGNILWILPAVQQDSGTYI 449
Query: 99 CIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-----QRLHIAGDGSLVCPYVSYFKD 153
C RN+++C + V + V +N T+A+ P Q ++ G LVCP + F
Sbjct: 450 CTFRNASHCEQMSVELKVFKN-------TEASLPHVSYLQISALSTTGLLVCPDLKEFIS 608
Query: 154 ENNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAEEHRGDYICRMSYTFRGKQYP 211
N + ++QWYK L N F D +LL+ N + + G Y C M++T+ G++Y
Sbjct: 609 SNAD-GKIQWYKGAILLDKGNKEFLSAGDPTRLLISNTSMDDAGYYRCVMTFTYNGQEYN 785
Query: 212 VTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNV---TGQFSDLVYWKWNGS 268
+TR I+ PVI+SP ETI A GS + + C V TG S+ + W W
Sbjct: 786 ITRNIELRVKGTTTEPIPVIISPL-ETIPASLGSRLIVPCKVFLGTGTSSNTIVW-WLA- 956
Query: 269 EIEWNDPFLAEDY------QFVEHPSTKRKYTLI-TTLNISEVKSQFYRYPFICVVKNTN 321
N F++ Y + + H ++ + +L V + F CV N
Sbjct: 957 ----NSTFISAAYPRGRVTEGLHHQYSENDENYVEVSLIFDPVTREDLHTDFKCVASNPR 1124
Query: 322 IFESAH 327
+S H
Sbjct: 1125SSQSLH 1142
>ref|NM_013037.1| Rattus norvegicus Interleukin 1 receptor-like 1 (Fos-responsive
gene 1) (St2), mRNA
Length = 2586
Score = 98.2 bits (243), Expect = 2e-18
Identities = 73/285 (25%), Positives = 119/285 (41%), Gaps = 4/285 (1%)
Frame = +1
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP ++ + WY +++ I + +RI + L F+PAKVEDSG Y
Sbjct: 304 NEALIVRCPQRGGAIN--PVEWYYSNTNERIPTQKRNRIFVSRDRLKFLPAKVEDSGIYT 477
Query: 99 CIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNEL 158
C++R+ + VT+ + P + + + CP ++ + N
Sbjct: 478 CVIRSPESIKTGSLNVTIYKRPPNCKIPDYMMYSTVDGSDKNSKITCPTIALY----NWT 645
Query: 159 PEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQF 218
VQW+KNCK L F L + V+ GDY CR ++T G Y VT F
Sbjct: 646 APVQWFKNCK--ALQGPRFRAHMSYLFIDKVSHVDEGDYTCRFTHTENGTNYIVTATRSF 819
Query: 219 ITIDENKRDRPVILS-PRNETIEADPGSMIQLICNV---TGQFSDLVYWKWNGSEIEWND 274
++ PVI + P N T+E + G + C+ T V W+ N + I
Sbjct: 820 TVEEKGFSTFPVITNPPHNYTVEVEIGKTANIACSACFGTASQFVAVLWQINKTRIGSFG 999
Query: 275 PFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
++ + S+ L + L I+ V + + + CV N
Sbjct: 1000KARIQEEKGPNKSSSNGMICLTSLLRITGVTDKDFSLKYDCVAMN 1134
>gb|U04319.1|RNU04319 Rattus norvegicus Fit-1S (Fit-1) mRNA, complete cds
Length = 2586
Score = 98.2 bits (243), Expect = 2e-18
Identities = 73/285 (25%), Positives = 119/285 (41%), Gaps = 4/285 (1%)
Frame = +1
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP ++ + WY +++ I + +RI + L F+PAKVEDSG Y
Sbjct: 304 NEALIVRCPQRGGAIN--PVEWYYSNTNERIPTQKRNRIFVSRDRLKFLPAKVEDSGIYT 477
Query: 99 CIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNEL 158
C++R+ + VT+ + P + + + CP ++ + N
Sbjct: 478 CVIRSPESIKTGSLNVTIYKRPPNCKIPDYMMYSTVDGSDKNSKITCPTIALY----NWT 645
Query: 159 PEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQF 218
VQW+KNCK L F L + V+ GDY CR ++T G Y VT F
Sbjct: 646 APVQWFKNCK--ALQGPRFRAHMSYLFIDKVSHVDEGDYTCRFTHTENGTNYIVTATRSF 819
Query: 219 ITIDENKRDRPVILS-PRNETIEADPGSMIQLICNV---TGQFSDLVYWKWNGSEIEWND 274
++ PVI + P N T+E + G + C+ T V W+ N + I
Sbjct: 820 TVEEKGFSTFPVITNPPHNYTVEVEIGKTANIACSACFGTASQFVAVLWQINKTRIGSFG 999
Query: 275 PFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
++ + S+ L + L I+ V + + + CV N
Sbjct: 1000KARIQEEKGPNKSSSNGMICLTSLLRITGVTDKDFSLKYDCVAMN 1134
>ref|XM_013114.2| Homo sapiens interleukin 1 receptor accessory protein-like 1
(IL1RAPL1), mRNA
Length = 2217
Score = 98.2 bits (243), Expect = 2e-18
Identities = 76/252 (30%), Positives = 126/252 (49%), Gaps = 9/252 (3%)
Frame = +1
Query: 313 FICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRD 372
+ C V+N N A V L + L GG + +VC V IYK +K++I+L+YR+
Sbjct: 217 YSCYVENGNGRRHASVLLHKRELMYTVELAGGLGAILLLLVCLVTIYKCYKIEIMLFYRN 396
Query: 373 SCSGFLPSKASDGKTYDAYILYPKTLGEG---SFSDLDTFVFKLLPEVLEGQFGYKLFIY 429
D K YDAY+ Y K + + + F ++LP++LE +GYKLFI
Sbjct: 397 HFGA--EELDGDNKDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIP 570
Query: 430 GRDDYVGEDTIEVTNENVKKSRRLIIILVRD---MGGFSWLGQSSEEQIAIYNALIQEGI 486
RD IE V +S+RLII++ + G+S E + + N L+ I
Sbjct: 571 DRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIF----ELETRLRNMLVTGEI 738
Query: 487 KIVLL---ELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPA 543
K++L+ EL I +Y+++ ++++ + VI W G + ++FWK L+Y+MP
Sbjct: 739 KVILIECSELRGIMNYQEV-EALKHTIKLLTVIKWHG---PKCNKLNSKFWKRLQYEMPF 906
Query: 544 QRRSPLSKHRLL 555
+R P++ + L
Sbjct: 907 KRIEPITHEQAL 942
>gb|BC021159.1|BC021159 Mus musculus, Similar to interleukin 1 receptor accessory protein,
clone MGC:14036 IMAGE:4161899, mRNA, complete cds
Length = 1916
Score = 94.4 bits (233), Expect = 3e-17
Identities = 82/300 (27%), Positives = 145/300 (48%), Gaps = 24/300 (8%)
Frame = +1
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 268 KCPLFEHFLKYNYSTAHSSGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 447
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHIA-GDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ FP +++I G + CP V
Sbjct: 448 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSAMRFPVHKMYIEHGIHKITCPNV 621
Query: 149 -SYFKDENNELPEVQWYKNCKPLL-LDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P V WYK C ++ NV G+ + V+ + G+Y C ++Y
Sbjct: 622 DGYF--PSSVKPSVTWYKGCTEIVDFHNVLPEGMNLSFFIPLVS--NNGNYTCVVTYPEN 789
Query: 207 GKQYPVTRVIQFITIDENKRD-RPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K P I SP + + E +PG + + C V F +
Sbjct: 790 GRLFHLTRTVTVKVVGSPKDALPPQIYSPNDRVVYEKEPGEELVIPCKVYFSFIMDSHNE 969
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT 320
V+W +G + + + + + V + ST+ + T L+I +V + R ++C +NT
Sbjct: 970 VWWTIDGKKPDDVTVDITIN-ESVSYSSTEDE-TRTQILSIKKVTPEDLRRNYVCHARNT 1143
>ref|NM_003856.1| Homo sapiens interleukin 1 receptor-like 1 (IL1RL1), mRNA
Length = 1357
Score = 93.6 bits (231), Expect = 5e-17
Identities = 79/294 (26%), Positives = 128/294 (42%), Gaps = 13/294 (4%)
Frame = +2
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + T+ WY + + I +R+ + L F+PA+V DSG Y
Sbjct: 131 NEALIVRCPRQGKPSY--TVDWYYSQTNKSIPTQERNRVFASGQLLKFLPAEVADSGIYT 304
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
CIVR+ T+ VT+ + L YST + + + + CP + +
Sbjct: 305 CIVRSPTFNRTGYANVTIYKKQSDCNVPDYLMYSTVSGSEK------NSKIYCPTIDLY- 463
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N ++W+KNC+ L + K L++ NV E GDY C+ + G Y V
Sbjct: 464 ---NWTAPLEWFKNCQ--ALQGSRYRAHKSFLVIDNVMTEDAGDYTCKFIHNENGANYSV 628
Query: 213 TRVIQFITIDENKRDR-PVILSP-RNETIEADPGSMIQLICNVT----GQFSDLVYWKWN 266
T F DE PVI +P +NE E + G L C+ QF V W+ N
Sbjct: 629 TATRSFTVKDEQGFSLFPVIGAPAQNEIKEVEIGKNANLTCSACFGKGTQFLAAVLWQLN 808
Query: 267 GSEI-EWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
G++I ++ +P + ++ + + L L I++VK + + C+ N
Sbjct: 809 GTKITDFGEPRIQQE-EGQNQSFSNGLACLDMVLRIADVKEEDLLLQYDCLALN 967
>dbj|D12763.1|HUMST2M Homo sapiens mRNA for ST2 protein
Length = 1357
Score = 93.6 bits (231), Expect = 5e-17
Identities = 79/294 (26%), Positives = 128/294 (42%), Gaps = 13/294 (4%)
Frame = +2
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + T+ WY + + I +R+ + L F+PA+V DSG Y
Sbjct: 131 NEALIVRCPRQGKPSY--TVDWYYSQTNKSIPTQERNRVFASGQLLKFLPAEVADSGIYT 304
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
CIVR+ T+ VT+ + L YST + + + + CP + +
Sbjct: 305 CIVRSPTFNRTGYANVTIYKKQSDCNVPDYLMYSTVSGSEK------NSKIYCPTIDLY- 463
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N ++W+KNC+ L + K L++ NV E GDY C+ + G Y V
Sbjct: 464 ---NWTAPLEWFKNCQ--ALQGSRYRAHKSFLVIDNVMTEDAGDYTCKFIHNENGANYSV 628
Query: 213 TRVIQFITIDENKRDR-PVILSP-RNETIEADPGSMIQLICNVT----GQFSDLVYWKWN 266
T F DE PVI +P +NE E + G L C+ QF V W+ N
Sbjct: 629 TATRSFTVKDEQGFSLFPVIGAPAQNEIKEVEIGKNANLTCSACFGKGTQFLAAVLWQLN 808
Query: 267 GSEI-EWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
G++I ++ +P + ++ + + L L I++VK + + C+ N
Sbjct: 809 GTKITDFGEPRIQQE-EGQNQSFSNGLACLDMVLRIADVKEEDLLLQYDCLALN 967
>gb|M24843.1|MUST1A Mouse T1 protein mRNA, complete cds
Length = 2653
Score = 92.8 bits (229), Expect = 8e-17
Identities = 75/292 (25%), Positives = 120/292 (40%), Gaps = 11/292 (3%)
Frame = +3
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + + WY +D+ I + +RI + L F+PA+VEDSG Y
Sbjct: 294 NEALIVRCPQRGRSTY--PVEWYYSDTNESIPTQKRNRIFVSRDRLKFLPARVEDSGIYA 467
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
C++R+ + VT+ + P L YST + I CP + +
Sbjct: 468 CVIRSPNLNKTGYLNVTIHKKPPSCNIPDYLMYSTVRGSDKNFKI------TCPTIDLY- 626
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N VQW+KNCK L F + L + NV + GDY C+ ++ G Y V
Sbjct: 627 ---NWTAPVQWFKNCK--ALQEPRFRAHRSYLFIDNVTHDDEGDYTCQFTHVENGTNYIV 791
Query: 213 TRVIQFITIDENKRDRPVILS-PRNETIEADPGSMIQLICNVT----GQFSDLVYWKWNG 267
T F ++ PVI + P N T+E + G + C+ F V W+ N
Sbjct: 792 TATRSFTVEEKGFSMFPVITNPPYNHTMEVEIGKPASIACSACFGKGSHFLADVLWQINK 971
Query: 268 SEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
+ + ++ + S+ L + L I+ V + + C+ N
Sbjct: 972 TVVGNFGEARIQEEEGRNESSSNDMDCLTSVLRITGVTEKDLSLEYDCLALN 1127
>ref|NM_010743.1| Mus musculus interleukin 1 receptor-like 1 (Il1rl1), mRNA
Length = 2667
Score = 92.8 bits (229), Expect = 8e-17
Identities = 75/292 (25%), Positives = 120/292 (40%), Gaps = 11/292 (3%)
Frame = +2
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + + WY +D+ I + +RI + L F+PA+VEDSG Y
Sbjct: 320 NEALIVRCPQRGRSTY--PVEWYYSDTNESIPTQKRNRIFVSRDRLKFLPARVEDSGIYA 493
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
C++R+ + VT+ + P L YST + I CP + +
Sbjct: 494 CVIRSPNLNKTGYLNVTIHKKPPSCNIPDYLMYSTVRGSDKNFKI------TCPTIDLY- 652
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N VQW+KNCK L F + L + NV + GDY C+ ++ G Y V
Sbjct: 653 ---NWTAPVQWFKNCK--ALQEPRFRAHRSYLFIDNVTHDDEGDYTCQFTHVENGTNYIV 817
Query: 213 TRVIQFITIDENKRDRPVILS-PRNETIEADPGSMIQLICNVT----GQFSDLVYWKWNG 267
T F ++ PVI + P N T+E + G + C+ F V W+ N
Sbjct: 818 TATRSFTVEEKGFSMFPVITNPPYNHTMEVEIGKPASIACSACFGKGSHFLADVLWQINK 997
Query: 268 SEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
+ + ++ + S+ L + L I+ V + + C+ N
Sbjct: 998 TVVGNFGEARIQEEEGRNESSSNDMDCLTSVLRITGVTEKDLSLEYDCLALN 1153
>emb|Y07519.1|MMST2 Mouse ST2 gene
Length = 2646
Score = 92.8 bits (229), Expect = 8e-17
Identities = 75/292 (25%), Positives = 120/292 (40%), Gaps = 11/292 (3%)
Frame = +3
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + + WY +D+ I + +RI + L F+PA+VEDSG Y
Sbjct: 297 NEALIVRCPQRGRSTY--PVEWYYSDTNESIPTQKRNRIFVSRDRLKFLPARVEDSGIYA 470
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
C++R+ + VT+ + P L YST + I CP + +
Sbjct: 471 CVIRSPNLNKTGYLNVTIHKKPPSCNIPDYLMYSTVRGSDKNFKI------TCPTIDLY- 629
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N VQW+KNCK L F + L + NV + GDY C+ ++ G Y V
Sbjct: 630 ---NWTAPVQWFKNCK--ALQEPRFRAHRSYLFIDNVTHDDEGDYTCQFTHAENGTNYIV 794
Query: 213 TRVIQFITIDENKRDRPVILS-PRNETIEADPGSMIQLICNVT----GQFSDLVYWKWNG 267
T F ++ PVI + P N T+E + G + C+ F V W+ N
Sbjct: 795 TATRSFTVEEKGFSMFPVITNPPYNHTMEVEIGKPASIACSACFGKGSHFLADVLWQINK 974
Query: 268 SEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
+ + ++ + S+ L + L I+ V + + C+ N
Sbjct: 975 TVVGNFGEARIQEEEGRNESSSNDMDCLTSVLRITGVTEKDLSLEYDCLALN 1130
>dbj|AB041737.2|AB041737 Gallus gallus mRNA for ST2, complete cds
Length = 1352
Score = 90.5 bits (223), Expect = 4e-16
Identities = 82/330 (24%), Positives = 146/330 (43%), Gaps = 15/330 (4%)
Frame = +2
Query: 50 PNKMHGDTIIWYKNDSKTPISADRD-SRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCL 108
P+ + + W+ ++ I + + SR+ + LWF+P +EDSG Y C++
Sbjct: 203 PHSVLSAKVTWHHTGTRKRIPEEEEGSRVFSKGIFLWFLPTSLEDSGNYTCVINYPDGSK 382
Query: 109 K-TKVTVTVLENDPGLCYSTQATFPQRLHIAGD---GSLVCPYVSYFKDENNELPEVQWY 164
K K+ V V G C FP R+ A + G + CP ++ EN + +QWY
Sbjct: 383 KERKMNVQVHPYKQGTC------FPSRILYANETRKGKISCP--TFRNYENATI--IQWY 532
Query: 165 KNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDEN 224
K+C+P + +F + + N+ +E G Y C+ +YT RG+ + V+ F++ ++
Sbjct: 533 KDCRP--IQGERYFMHDPYIFIENLNKEDDGYYTCQFTYTHRGRVFNVSATRIFVSEAKH 706
Query: 225 KRDRPVILSPRNE-TIEADPGSMIQLIC----NVTGQFSDLVYWKWNGSEIEWND-PFLA 278
IL P++E +E + G+ L C + Q +V W N E+ D +
Sbjct: 707 SSLPVQILFPKDEDVLEVELGAAFSLKCQARLGIKKQPIAVVTWDVNKMPAEYADEEKIR 886
Query: 279 EDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT--NIFESAHVQLIYPVPD 336
+++ + E ++Y TL IS ++ + F CV N N + ++L P
Sbjct: 887 QEFSYFE--GQHQEYYGEATLTISNIEHTDLQSSFSCVAMNEMGNTRTTVTLRLKKKCPQ 1060
Query: 337 --FKNYLIGGFIILTATIVCCVCIYKVFKV 364
F+ L +CCV +Y + V
Sbjct: 1061*MFRKAL--------CCCLCCVDVYPLLPV 1126
>ref|XM_036436.4| Homo sapiens interleukin 1 receptor accessory protein (IL1RAP),
mRNA
Length = 2041
Score = 89.7 bits (221), Expect = 7e-16
Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 24/295 (8%)
Frame = +3
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 342 KCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 521
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHIA-GDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ P +L+I G + CP V
Sbjct: 522 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSPMKLPVHKLYIEYGIQRITCPNV 695
Query: 149 -SYFKDENNELPEVQWYKNC-KPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P + WY C K +NV G+ L+ ++ + G+Y C ++Y
Sbjct: 696 DGYF--PSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALIS--NNGNYTCVVTYPEN 863
Query: 207 GKQYPVTRVIQFITIDENKRD-RPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K PVI SP + + E +PG + + C V F +
Sbjct: 864 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 1043
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFIC 315
V+W +G + + + + + H T+ + T L+I +V S+ + ++C
Sbjct: 1044VWWTIDGKKPD-DITIDVTINESISHSRTEDE-TRTQILSIKKVTSEDLKRSYVC 1202
>gb|AF167343.1|AF167343 Homo sapiens soluble interleukin-1 receptor accessory protein
(IL1RAP) mRNA, complete cds
Length = 1857
Score = 89.7 bits (221), Expect = 7e-16
Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 24/295 (8%)
Frame = +1
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 136 KCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 315
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHIA-GDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ P +L+I G + CP V
Sbjct: 316 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSPMKLPVHKLYIEYGIQRITCPNV 489
Query: 149 -SYFKDENNELPEVQWYKNC-KPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P + WY C K +NV G+ L+ ++ + G+Y C ++Y
Sbjct: 490 DGYF--PSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALIS--NNGNYTCVVTYPEN 657
Query: 207 GKQYPVTRVIQFITIDENKRD-RPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K PVI SP + + E +PG + + C V F +
Sbjct: 658 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 837
Query: 261 VYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFIC 315
V+W +G + + + + + H T+ + T L+I +V S+ + ++C
Sbjct: 838 VWWTIDGKKPD-DITIDVTINESISHSRTEDE-TRTQILSIKKVTSEDLKRSYVC 996
>dbj|AB041748.1|AB041740S9 Gallus gallus gene for ST2L, ST2LV, complete cds
Length = 1858
Score = 89.7 bits (221), Expect = 7e-16
Identities = 45/122 (36%), Positives = 73/122 (58%)
Frame = +2
Query: 438 DTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQ 497
D + ++KSRRLII+L + + L ++ IA+YNALIQ K++LLE+EK+
Sbjct: 239 DKANAIEKRIQKSRRLIILLTQQLINCQELNY--DQHIALYNALIQNDTKVILLEMEKMG 412
Query: 498 DYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTL 557
YE + +S+++I ++ G + W PQS+ ++FWK++RY MP RS S + T+
Sbjct: 413 SYENLQESLRYIIKQQGTVKWKEQHTVHPQSSNSKFWKHVRYHMPVTLRSSDSANAG*TV 592
Query: 558 DP 559
P
Sbjct: 593 GP 598
>gb|BC016141.1|BC016141 Homo sapiens, interleukin 1 receptor accessory protein, clone
IMAGE:3920152, mRNA
Length = 1549
Score = 87.8 bits (216), Expect = 3e-15
Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 24/249 (9%)
Frame = +2
Query: 45 KCPLTPNKMH---------GDTIIWY----KNDSKTPISADR-DSRIHQQNEHLWFVPAK 90
KCPL + + G T+IWY D + PI+ ++RI ++ + LWF P
Sbjct: 341 KCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL 520
Query: 91 VEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFP-QRLHIA-GDGSLVCPYV 148
+ D+G Y C++RN+TYC K + V++ D C+++ P +L+I G + CP V
Sbjct: 521 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS--CFNSPMKLPVHKLYIEYGIQRITCPNV 694
Query: 149 -SYFKDENNELPEVQWYKNC-KPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFR 206
YF ++ P + WY C K +NV G+ L+ ++ + G+Y C ++Y
Sbjct: 695 DGYF--PSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALIS--NNGNYTCVVTYPEN 862
Query: 207 GKQYPVTRVIQFITIDENKRD-RPVILSPRNETI-EADPGSMIQLICNVTGQF----SDL 260
G+ + +TR + + K PVI SP + + E +PG + + C V F +
Sbjct: 863 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 1042
Query: 261 VYWKWNGSE 269
V+W +G +
Sbjct: 1043VWWTIDGKK 1069
>gb|BC012580.1|BC012580 Homo sapiens, Similar to interleukin 1 receptor-like 1, clone
IMAGE:4043930, mRNA
Length = 918
Score = 77.8 bits (190), Expect = 3e-12
Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Frame = +3
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + T+ WY + + I +R+ + L F+PA+V DSG Y
Sbjct: 318 NEALIVRCPRQGKPSY--TVDWYYSQTNKSIPTQERNRVFASGQLLKFLPAEVADSGIYT 491
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
CIVR+ T+ VT+ + L YST + + + + CP + +
Sbjct: 492 CIVRSPTFNRTGYANVTIYKKQSDCNVPDYLMYSTVSGSEK------NSKIYCPTIDLY- 650
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N ++W+KNC+ L + K L++ NV E GDY C+ + G Y V
Sbjct: 651 ---NWTAPLEWFKNCQ--ALQGSRYRAHKSFLVIDNVMTEDAGDYTCKFIHNENGANYSV 815
Query: 213 TRVIQFITIDE 223
T F DE
Sbjct: 816 TATRSFTVKDE 848
>gb|BC004628.1|BC004628 Mus musculus, clone IMAGE:3585952, mRNA
Length = 728
Score = 77.4 bits (189), Expect = 4e-12
Identities = 44/126 (34%), Positives = 64/126 (49%), Gaps = 6/126 (4%)
Frame = +2
Query: 46 CPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNST 105
C P + WYK SK+P+S +R R+HQ + F+P +EDSG Y C++RN+
Sbjct: 323 CTYPPETNGAVNLTWYKTPSKSPVSNNRHLRVHQDQTWILFLPLTLEDSGIYQCVIRNAH 502
Query: 106 YCLKTKVTVTVLEND------PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP 159
C + V +TVL+N G ++ + Q L I GSL C YF E+ L
Sbjct: 503 NCYQIAVNLTVLKNHWCDSSMEGSPVNSPDVYQQILPIGKSGSLNCHL--YF-PESCALD 673
Query: 160 EVQWYK 165
++WYK
Sbjct: 674 SIKWYK 691
>emb|AJ276474.2|OMY276474 Oncorhynchus mykiss mRNA for interleukin-1 receptor type II
(IL-1rII gene)
Length = 1560
Score = 75.9 bits (185), Expect = 1e-11
Identities = 67/257 (26%), Positives = 107/257 (41%), Gaps = 40/257 (15%)
Frame = +1
Query: 55 GDTIIWYKNDSKTPISAD--RDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKV 112
G T + K + I D ++ R+ Q+ LW +PA+ DSG Y CI RN T C+
Sbjct: 292 GYTYVIAKGNGTEGIDPDEGKEGRVLQRERQLWLLPARTSDSGAYSCIYRNDTLCVIGSF 471
Query: 113 TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
T+ V E + ++P + S+ CP++ F N E++WYK+ P +L
Sbjct: 472 TLQVYETKQ--TDIEKLSYPISTPVGKKLSIRCPHLKDF----NRTDEIEWYKDSSPTVL 633
Query: 173 DNVSFFGVK---DKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQ------------ 217
S + D +L+ +V +G Y C++ QY V+R I
Sbjct: 634 PVGSGRYQRQRQDVILISDVRPADQGLYTCQLRVHVNNLQYTVSRTINLNVKVPDPVPYI 813
Query: 218 ------------------FITIDENKRDRPVILSPRNETIEADP-GSMIQLICNV-TGQF 257
T++ P I+SP N TI P GS++++ C V TG
Sbjct: 814 QTTRPIFDPDTTLTPNPGLSTVEPPAVVSPKIVSPANGTIFESPLGSVLEISCQVFTGSQ 993
Query: 258 S---DLVYWKWNGSEIE 271
S +V W +G ++
Sbjct: 994 SADATMVTWLVDGHSLD 1044
>dbj|AB029084.1|AB029084 Homo sapiens ST2V mRNA, complete cds
Length = 1680
Score = 74.3 bits (181), Expect = 3e-11
Identities = 52/186 (27%), Positives = 80/186 (42%), Gaps = 6/186 (3%)
Frame = +2
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + T+ WY + + I +R+ L F+PA+V DSG Y
Sbjct: 284 NEALIVRCPRQGKPSY--TVDWYYSQTNKSIPTQERNRVFASGRLLKFLPAEVADSGIYT 457
Query: 99 CIVRNSTYCLKTKVTVTVLENDPG------LCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
CIVR+ T+ VT+ + L YST + + + + CP + +
Sbjct: 458 CIVRSPTFNRTGYANVTIYKKQSDCNVPDYLMYSTVSGSEK------NSKIYCPTIDLY- 616
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPV 212
N ++W+KNC+ L + K L++ NV E GDY C+ + G Y V
Sbjct: 617 ---NWTAPLEWFKNCQ--ALQGSRYRAHKSFLVIDNVMTEDAGDYTCKFIHNENGANYSV 781
Query: 213 TRVIQF 218
T F
Sbjct: 782 TATRSF 799
>emb|AJ277110.1|EVI277110 Ectromelia virus IL1RB for Interleukin 1 beta receptor
Length = 987
Score = 63.9 bits (154), Expect = 4e-08
Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 9/257 (3%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
IIW K AD D+ I N ++ + DSG Y CI +N TYC + +T+
Sbjct: 187 IIWEKR------GADNDNIIPIDNGTNMLILNPTQTDSGIYICITKNETYCDMMSLNLTI 348
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP-EVQWYKNCKPLLLDNV 175
+ + ++PQ ++ G +VCP ++ F N ++ +V W + P L +
Sbjct: 349 VTDTESNI--DLISYPQIVNERSTGEMVCPNINAFIARNKDVDVDVIWRGH--PRLRNKR 516
Query: 176 SFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPR 235
+ + +V + G Y C + YT+R K Y VTR+++ RDR I+ P
Sbjct: 517 LTQRPIGIITIEDVRKNDAGYYTCVLKYTYRDKTYEVTRIVKL-----EVRDR--IIPPT 675
Query: 236 NE---TIEADPGSMIQLICNVTGQFSDL---VYWKWNGSEIEWNDPFLAEDYQFVEHPST 289
+ + GS + + C V+ + + V+W N E +D ++ T
Sbjct: 676 MQLPVVVMTSLGSNLTIACRVSLRPPTIDADVFWISNNEYYEEDDED-SDGRSVTNRIFT 852
Query: 290 KRKYTLITT-LNISEVK 305
K +IT+ LNI+ VK
Sbjct: 853 IDKRRVITSRLNINPVK 903
>dbj|AB041747.1|AB041740S8 Gallus gallus st2 gene, exon 11
Length = 545
Score = 63.9 bits (154), Expect = 4e-08
Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 9/102 (8%)
Frame = +3
Query: 383 SDGKTYDAYILYPKTLG-EGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIE 441
+DGK YDAY++YP++ E +F ++ FV++++P++LE + GY L IYGRD Y GE +
Sbjct: 246 ADGKIYDAYVIYPRSHSTEATF--VEYFVYQIMPDILENKCGYTLCIYGRDTYPGEGKFQ 419
Query: 442 V--TNENVKKSRRLIIILVRDMGG------FSWLGQSSEEQI 475
+ + +++ + + GG SW G SS++Q+
Sbjct: 420 IR*STALFIALEQVVFLDPQGQGGGKEVPWHSWAGCSSQQQL 545
>gb|AF012825.1|AF012825 Ectromelia virus envelope glycoprotein C1R (C1R), C2R (C2R), C3R
(C3R), IFN-gamma binding protein C4R (C4R), C5R (C5R),
protein kinase C6R (C6R), serpin C7R (C7R), C8R (C8R),
IL-1 beta binding protein C9R (C9R), C10L (C10L), C11R
(C11R), IFN-alpha/beta>
Length = 32318
Score = 63.9 bits (154), Expect = 4e-08
Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 9/257 (3%)
Frame = +3
Query: 58 IIWYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
IIW K AD D+ I N ++ + DSG Y CI +N TYC + +T+
Sbjct: 8094 IIWEKR------GADNDNIIPIDNGTNMLILNPTQTDSGIYICITKNETYCDMMSLNLTI 8255
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP-EVQWYKNCKPLLLDNV 175
+ + ++PQ ++ G +VCP ++ F N ++ +V W + P L +
Sbjct: 8256 VTDTESNI--DLISYPQIVNERSTGEMVCPNINAFIARNKDVDVDVIWRGH--PRLRNKR 8423
Query: 176 SFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPR 235
+ + +V + G Y C + YT+R K Y VTR+++ RDR I+ P
Sbjct: 8424 LTQRPIGIITIEDVRKNDAGYYTCVLKYTYRDKTYEVTRIVKL-----EVRDR--IIPPT 8582
Query: 236 NE---TIEADPGSMIQLICNVTGQFSDL---VYWKWNGSEIEWNDPFLAEDYQFVEHPST 289
+ + GS + + C V+ + + V+W N E +D ++ T
Sbjct: 8583 MQLPVVVMTSLGSNLTIACRVSLRPPTIDADVFWISNNEYYEEDDED-SDGRSVTNRIFT 8759
Query: 290 KRKYTLITT-LNISEVK 305
K +IT+ LNI+ VK
Sbjct: 8760 IDKRRVITSRLNINPVK 8810
Score = 37.4 bits (85), Expect = 4.0
Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 14/221 (6%)
Frame = +2
Query: 148 VSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSY-TFR 206
+ Y K NN + WYKN + L++D + L++ N E G Y C + Y R
Sbjct: 12446 ILYAKHYNN----ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVR 12613
Query: 207 GKQYPVTRVIQFITIDENKRDR-PVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKW 265
K V + +T+ ++ R +IL P+ +P ++ + + D++
Sbjct: 12614 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVL---- 12781
Query: 266 NGSEIEWNDP---FLAEDYQFVEHPSTKRKYTLITTLNISEVKSQF---------YRYPF 313
I+W +P + D+ ++ T TL V ++ + Y F
Sbjct: 12782 ----IDWENPSGWIIGLDFGVYSILTSSGGIT-EATLYFENVTEEYIGNTYTCRGHNYYF 12946
Query: 314 ICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVC 354
+ T + E H +Y + ++ +I II+ ++C
Sbjct: 12947 DKTLTTTVVLE*IHNAFLYTLLNYY*IIIIIIIIINYIVLC 13069
>gb|BC003591.1|BC003591 Homo sapiens, single Ig IL-1R-related molecule, clone MGC:4338
IMAGE:2821373, mRNA, complete cds
Length = 1627
Score = 63.2 bits (152), Expect = 7e-08
Identities = 78/329 (23%), Positives = 144/329 (43%), Gaps = 11/329 (3%)
Frame = +1
Query: 229 PVILSP-RNETIEADPGSMIQLICN---VTGQFSDL--VYWKWNGSEIEWNDPFLAEDYQ 282
P LSP ++ + GS + L C V+G L V W +G + + +Y
Sbjct: 181 PDFLSPSEDQVLRPALGSSVALNCTAWVVSGPHCSLPSVQWLKDGLPLGIGGHYSLHEYS 360
Query: 283 FVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLI 342
+V+ + + + + L ++ ++ Y F C ++N + F S +Q P L
Sbjct: 361 WVK--ANLSEVLVSSVLGVNVTSTEVYG-AFTCSIQNIS-FSSFTLQRAGPTSHVAAVLA 528
Query: 343 GGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGS 402
++L ++ +Y +++++LWY+D+ + + +DGK YDAY+ Y +
Sbjct: 529 SLLVLLA--LLLAALLYVKCRLNVLLWYQDA---YGEVEINDGKLYDAYVSYSDCPEDRK 693
Query: 403 FSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMG 462
F + F L P+ LE + GYKLF+ RD + N+ + RRLI++L
Sbjct: 694 FVN-----FILKPQ-LERRRGYKLFLDDRDLLPRAEPSADLLVNLSRCRRLIVVLSDAFL 855
Query: 463 GFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQ-KHGV--ICWS 519
+W S E + L + I I + Q + +++ ++Q +H V + W
Sbjct: 856 SRAWCSHSFREGLCRLLELTRRPIFITF----EGQRRDPAHPALRLLRQHRHLVTLLLW- 1020
Query: 520 GDFQERPQSA--KTRFWKNLRYQMPAQRR 546
RP S + FWK ++ +P + R
Sbjct: 1021-----RPGSVTPSSDFWKEVQLALPRKVR 1092
>ref|NM_021805.1| Homo sapiens single Ig IL-1R-related molecule (SIGIRR), mRNA
Length = 1695
Score = 63.2 bits (152), Expect = 7e-08
Identities = 78/329 (23%), Positives = 144/329 (43%), Gaps = 11/329 (3%)
Frame = +2
Query: 229 PVILSP-RNETIEADPGSMIQLICN---VTGQFSDL--VYWKWNGSEIEWNDPFLAEDYQ 282
P LSP ++ + GS + L C V+G L V W +G + + +Y
Sbjct: 251 PDFLSPSEDQVLRPALGSSVALNCTAWVVSGPHCSLPSVQWLKDGLPLGIGGHYSLHEYS 430
Query: 283 FVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLI 342
+V+ + + + + L ++ ++ Y F C ++N + F S +Q P L
Sbjct: 431 WVK--ANLSEVLVSSVLGVNVTSTEVYG-AFTCSIQNIS-FSSFTLQRAGPTSHVAAVLA 598
Query: 343 GGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGS 402
++L ++ +Y +++++LWY+D+ + + +DGK YDAY+ Y +
Sbjct: 599 SLLVLLA--LLLAALLYVKCRLNVLLWYQDA---YGEVEINDGKLYDAYVSYSDCPEDRK 763
Query: 403 FSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMG 462
F + F L P+ LE + GYKLF+ RD + N+ + RRLI++L
Sbjct: 764 FVN-----FILKPQ-LERRRGYKLFLDDRDLLPRAEPSADLLVNLSRCRRLIVVLSDAFL 925
Query: 463 GFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQ-KHGV--ICWS 519
+W S E + L + I I + Q + +++ ++Q +H V + W
Sbjct: 926 SRAWCSHSFREGLCRLLELTRRPIFITF----EGQRRDPAHPALRLLRQHRHLVTLLLW- 1090
Query: 520 GDFQERPQSA--KTRFWKNLRYQMPAQRR 546
RP S + FWK ++ +P + R
Sbjct: 1091-----RPGSVTPSSDFWKEVQLALPRKVR 1162
>dbj|AK025099.1|AK025099 Homo sapiens cDNA: FLJ21446 fis, clone COL04458
Length = 1695
Score = 63.2 bits (152), Expect = 7e-08
Identities = 78/329 (23%), Positives = 144/329 (43%), Gaps = 11/329 (3%)
Frame = +2
Query: 229 PVILSP-RNETIEADPGSMIQLICN---VTGQFSDL--VYWKWNGSEIEWNDPFLAEDYQ 282
P LSP ++ + GS + L C V+G L V W +G + + +Y
Sbjct: 251 PDFLSPSEDQVLRPALGSSVALNCTAWVVSGPHCSLPSVQWLKDGLPLGIGGHYSLHEYS 430
Query: 283 FVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLI 342
+V+ + + + + L ++ ++ Y F C ++N + F S +Q P L
Sbjct: 431 WVK--ANLSEVLVSSVLGVNVTSTEVYG-AFTCSIQNIS-FSSFTLQRAGPTSHVAAVLA 598
Query: 343 GGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGS 402
++L ++ +Y +++++LWY+D+ + + +DGK YDAY+ Y +
Sbjct: 599 SLLVLLA--LLLAALLYVKCRLNVLLWYQDA---YGEVEINDGKLYDAYVSYSDCPEDRK 763
Query: 403 FSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMG 462
F + F L P+ LE + GYKLF+ RD + N+ + RRLI++L
Sbjct: 764 FVN-----FILKPQ-LERRRGYKLFLDDRDLLPRAEPSADLLVNLSRCRRLIVVLSDAFL 925
Query: 463 GFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQ-KHGV--ICWS 519
+W S E + L + I I + Q + +++ ++Q +H V + W
Sbjct: 926 SRAWCSHSFREGLCRLLELTRRPIFITF----EGQRRDPAHPALRLLRQHRHLVTLLLW- 1090
Query: 520 GDFQERPQSA--KTRFWKNLRYQMPAQRR 546
RP S + FWK ++ +P + R
Sbjct: 1091-----RPGSVTPSSDFWKEVQLALPRKVR 1162
>gb|S78201.1|S78201 Sheeppox virus strain KS-1 Q2/1L (Q2/1L) gene, partial cds; and
Q2/2L (Q2/2L) and Q2/3L (Q2/3L) genes, complete cds
Length = 2910
Score = 62.8 bits (151), Expect = 9e-08
Identities = 70/305 (22%), Positives = 121/305 (38%), Gaps = 16/305 (5%)
Frame = +2
Query: 31 QIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYK-NDSKTPISAD---------RDSRIHQQ 80
Q V+ N +I KCP + T+ W+ N +K + D R++
Sbjct: 17 QSVMKTFENNSEIVKCPYVDTLNYNTTVKWFLVNYNKYVKTGDVKKSFHEFKNTDRVYSV 196
Query: 81 NEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGD 140
LW DSG Y C V NSTY + V + V + + I +
Sbjct: 197 GHSLWINNITKNDSGIYACNVHNSTYYFTSSVMLDVYKKE-----------TINSVIGTN 343
Query: 141 GSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICR 200
L+C F + N EV W+K+ + + +N + K+KLL+RN+++ G Y+C
Sbjct: 344 YELLCINTKNFINTFNCSYEVNWFKD-REKINNNFKYKKSKEKLLIRNISKSDEGVYLCS 520
Query: 201 MSYTFR--GKQYPVTRVIQFITIDEN-KRDRPVILSPRNETIEADPGSMIQLI---CNVT 254
++ R K + R I + K D + ++ N TI +++ I N+
Sbjct: 521 ITTDTRCNPKNLALKRYYHNNVIKKRFKDDINLTVNFLNSTIALGKNFLMECIGESKNIQ 700
Query: 255 GQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFI 314
+ ++W NG + D +++ Y + L I EVK ++ F
Sbjct: 701 RVYGSSIFWLINGVNV--LDYDRSKNIYLGREMYVGNSYKI--ALIIKEVKRKYLSANFT 868
Query: 315 CVVKN 319
C ++N
Sbjct: 869 CNLRN 883
>gb|AF325528.1|AF325528 Lumpy skin disease virus isolate Neethling 2490, complete genome
Length = 150773
Score = 62.8 bits (151), Expect = 9e-08
Identities = 70/305 (22%), Positives = 121/305 (38%), Gaps = 16/305 (5%)
Frame = -3
Query: 31 QIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYK-NDSKTPISAD---------RDSRIHQQ 80
Q V+ N +I KCP + T+ W+ N +K + D R++
Sbjct: 9837 QSVMKTFENNSEIVKCPYVDTLNYNTTVKWFLVNYNKYVKTGDVKKSFHEFKNTDRVYSV 9658
Query: 81 NEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGD 140
LW DSG Y C V NSTY + V + V + + I +
Sbjct: 9657 GHSLWINNITKNDSGIYACNVHNSTYYFTSSVMLDVYKKE-----------TINSVIGTN 9511
Query: 141 GSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICR 200
L+C F + N EV W+K+ + + +N + K+KLL+RN+++ G Y+C
Sbjct: 9510 YELLCINTKNFINTFNCSYEVNWFKD-REKINNNFKYKKSKEKLLIRNISKSDEGVYLCS 9334
Query: 201 MSYTFR--GKQYPVTRVIQFITIDEN-KRDRPVILSPRNETIEADPGSMIQLI---CNVT 254
++ R K + R I + K D + ++ N TI +++ I N+
Sbjct: 9333 ITTDTRCNPKNLALKRYYHNNVIKKRFKDDINLTVNFLNSTIALGKNFLMECIGESKNIQ 9154
Query: 255 GQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFI 314
+ ++W NG + D +++ Y + L I EVK ++ F
Sbjct: 9153 RVYGSSIFWLINGVNV--LDYDRSKNIYLGREMYVGNSYKI--ALIIKEVKRKYLSANFT 8986
Query: 315 CVVKN 319
C ++N
Sbjct: 8985 CNLRN 8971
Score = 58.2 bits (139), Expect = 2e-06
Identities = 39/154 (25%), Positives = 65/154 (41%)
Frame = -2
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
YKN K ++ + SR+ +LW P D G Y C R+ C + + +T L+ +
Sbjct: 3424 YKNFKKIEVNNENASRVQLIGNNLWLYPVINIDDGIYICRFRSHNICEEMSIKLTFLDKE 3245
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGV 180
+ Y +H D L+ SYFK++ + WYKN +L D+
Sbjct: 3244 ETITYRFNEGLNSTVHCM-DIDLIS---SYFKNKT-----LDWYKNNNKVLYDD-RIQSN 3095
Query: 181 KDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTR 214
+ KL+++N + G Y C + Y + R
Sbjct: 3094 ELKLVIKNTTHDDSGIYTCNLRINKDSINYDIKR 2993
>emb|Z81144.1|HSU129B7 Human DNA sequence from cosmid U129B7, between markers DXS366 and DXS87
on chromosome X contains EST
Length = 22388
Score = 62.0 bits (149), Expect = 2e-07
Identities = 26/69 (37%), Positives = 43/69 (61%)
Frame = +2
Query: 97 YYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENN 156
+ C RNSTYC+K +++TV EN+ GLCY+++ + ++ + + CP + FK +
Sbjct: 11870 FLCSYRNSTYCMKVSMSLTVAENESGLCYNSRIRYLEKSEVTKRKEISCPDMDDFKKSDQ 12049
Query: 157 ELPEVQWYK 165
E P+V WYK
Sbjct: 12050 E-PDVVWYK 12073
>gb|AF380138.1|AF380138 Monkeypox virus strain Zaire-96-I-16, complete genome
Length = 196858
Score = 60.8 bits (146), Expect = 3e-07
Identities = 67/270 (24%), Positives = 109/270 (39%), Gaps = 14/270 (5%)
Frame = +2
Query: 19 SLEIDVCTEYPNQIVLFLSV-NEIDIRKCPLTPNKMHGDTII---WYKNDSKTPISADRD 74
+ + C + F+ + NE I CP G I+ W K AD D
Sbjct: 172460 TFNVPECIDKGQYFASFMELENEPVILPCPQINTLSSGYNILDILWEKR------GADND 172621
Query: 75 SRIHQQN-EHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL---ENDPGLCYSTQAT 130
I N ++ + DSG Y CI N TYC + +T++ E++ L +
Sbjct: 172622 RIIQIDNGSNMLILNPTQSDSGIYICITTNETYCDMMSLNLTIVSVSESNIDLI-----S 172786
Query: 131 FPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVA 190
+PQ ++ G +VCP ++ F N ++ W + + L + + + +V
Sbjct: 172787 YPQIVNERSTGEMVCPNINAFISSNVNA-DIIWSGHRR--LRNKRLKQRTPGIITIEDVR 172957
Query: 191 EEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDR---PVILSPRNETIEADPGSMI 247
+ G Y C + Y + GK Y VTR+I+ RDR P + P E + GS +
Sbjct: 172958 KNDAGYYTCVLEYIYMGKTYNVTRIIKL-----EVRDRIIPPTMKLP--EGVVTSIGSNL 173116
Query: 248 QLICNVTGQFSDL---VYWKWNGSEIEWND 274
+ C V+ + V+W NG E D
Sbjct: 173117 TITCRVSLRLPTTDADVFWISNGMYYEEED 173206
>ref|NM_023059.1| Mus musculus single Ig IL-1 receptor related protein
(Sigirr-pending), mRNA
Length = 1540
Score = 60.5 bits (145), Expect = 4e-07
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 2/199 (1%)
Frame = +1
Query: 346 IILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD 405
+++ ++ +Y +++++LWY+D+ + + +DGK YDAY+ Y + F +
Sbjct: 487 LLVLVVLLLVALLYVKCRLNMLLWYQDT---YREVEMNDGKLYDAYVSYSDCPEDRKFVN 657
Query: 406 LDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFS 465
F L P+ LE + GYKLF+ RD D N+ + RRLI++L
Sbjct: 658 -----FILKPQ-LERRRGYKLFLEDRDLLPRADASADLLVNLSRCRRLIVVLSDAFLSRP 819
Query: 466 WLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQER 525
W QS E A Y + + + L + Y + S + + ++ W +
Sbjct: 820 WCSQSFREDCAAYWSSPAD-LSSSPLRARGVSPYTLLSGSCRHDRHLVTLVLW------K 978
Query: 526 PQSA--KTRFWKNLRYQMP 542
P S + FWK L+ +P
Sbjct: 979 PGSVTPSSDFWKELQLALP 1035
>gb|AF113795.1|AF113795 Mus musculus toll/interleukin-1 receptor 8 (TIR8) mRNA, complete
cds
Length = 1540
Score = 60.5 bits (145), Expect = 4e-07
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 2/199 (1%)
Frame = +1
Query: 346 IILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD 405
+++ ++ +Y +++++LWY+D+ + + +DGK YDAY+ Y + F +
Sbjct: 487 LLVLVVLLLVALLYVKCRLNMLLWYQDT---YREVEMNDGKLYDAYVSYSDCPEDRKFVN 657
Query: 406 LDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFS 465
F L P+ LE + GYKLF+ RD D N+ + RRLI++L
Sbjct: 658 -----FILKPQ-LERRRGYKLFLEDRDLLPRADASADLLVNLSRCRRLIVVLSDAFLSRP 819
Query: 466 WLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQER 525
W QS E A Y + + + L + Y + S + + ++ W +
Sbjct: 820 WCSQSFREDCAAYWSSPAD-LSSSPLRARGVSPYTLLSGSCRHDRHLVTLVLW------K 978
Query: 526 PQSA--KTRFWKNLRYQMP 542
P S + FWK L+ +P
Sbjct: 979 PGSVTPSSDFWKELQLALP 1035
>emb|Y15035.1|CVY15035 Cowpox virus strain GRI-90 DNA (49 kb fragment)
Length = 49649
Score = 59.7 bits (143), Expect = 8e-07
Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 13/249 (5%)
Frame = +2
Query: 39 NEIDIRKCPLTPNKMHGDTII---WYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDS 94
NE I CP G I+ W K AD D I N ++ + DS
Sbjct: 19550 NEPVILPCPQINTLSSGYNILDILWEKR------GADNDRIIPIDNGSNMLILNPTQSDS 19711
Query: 95 GYYYCIVRNSTYCLKTKVTVTVL---ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYF 151
G Y CI N TYC + +T++ E++ L ++PQ ++ G +VCP ++ F
Sbjct: 19712 GIYICITTNETYCDMMSLNLTIVSVSESNIDLI-----SYPQIVNERSTGEMVCPNINAF 19876
Query: 152 KDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYP 211
N ++ W + + L + + + +V + G Y C + Y +RGK Y
Sbjct: 19877 IASNVNA-DIIWSGHRR--LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLEYIYRGKTYN 20047
Query: 212 VTRVIQFITIDENKRDR---PVILSPRNETIEADPGSMIQLICNVTGQFSDL---VYWKW 265
VTR+++ RDR P + P E + GS + + C V+ + V+W
Sbjct: 20048 VTRIVKL-----EVRDRIIHPTMQLP--EGVVTSIGSNLTIACRVSLRPPTTDADVFWIS 20206
Query: 266 NGSEIEWND 274
NG E +D
Sbjct: 20207 NGMYYEEDD 20233
Score = 37.4 bits (85), Expect = 4.0
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = +3
Query: 148 VSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSY-TFR 206
+ Y K NN + WYK+ K + +D++ + +L++ N E G Y C + Y R
Sbjct: 23928 ILYAKHYNN----ITWYKDNKEINIDDIKYSQTGKELIIHNPELEDSGRYDCYVHYDDVR 24095
Query: 207 GKQYPVTRVIQFITIDENKRDR-PVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKW 265
K V + +T+ ++ R +IL P+ +P ++ + + D++
Sbjct: 24096 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLIDDVL---- 24263
Query: 266 NGSEIEWNDP 275
IEW +P
Sbjct: 24264 ----IEWENP 24281
>emb|AL117666.1|HSM801204 Homo sapiens mRNA; cDNA DKFZp586O1624 (from clone DKFZp586O1624);
partial cds
Length = 2958
Score = 59.3 bits (142), Expect = 1e-06
Identities = 46/154 (29%), Positives = 69/154 (43%), Gaps = 3/154 (1%)
Frame = +2
Query: 54 HGDTIIWYKNDSKTPISADRDSRIH-QQNEHLWFVP-AKVEDSGYYYCIVRNSTYCLKTK 111
H + I ++ D T A R+ R+H ++ ++F+ K++D+G Y C +NS +
Sbjct: 44 HPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKIDDAGVYSCTAQNSAGSISAN 223
Query: 112 VTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLL 171
T+TVLE P L P + G V K N P + W+K +PL
Sbjct: 224 ATLTVLET-PSL------VVPLEDRVVSVGETV---ALQCKATGNPPPRITWFKGDRPLS 373
Query: 172 LDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYT 204
L ++LL V+NV E G Y C MS T
Sbjct: 374 LTERHHLTPDNQLLVVQNVVAEDAGRYTCEMSNT 475
>gb|AF381545.1|AF381545 Homo sapiens membrane glycoprotein LIG-1 mRNA, complete cds
Length = 4762
Score = 59.3 bits (142), Expect = 1e-06
Identities = 46/154 (29%), Positives = 69/154 (43%), Gaps = 3/154 (1%)
Frame = +3
Query: 54 HGDTIIWYKNDSKTPISADRDSRIH-QQNEHLWFVP-AKVEDSGYYYCIVRNSTYCLKTK 111
H + I ++ D T A R+ R+H ++ ++F+ K++D+G Y C +NS +
Sbjct: 1887 HPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKIDDAGVYSCTAQNSAGSISAN 2066
Query: 112 VTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLL 171
T+TVLE P L P + G V K N P + W+K +PL
Sbjct: 2067 ATLTVLET-PSL------VVPLEDRVVSVGETV---ALQCKATGNPPPRITWFKGDRPLS 2216
Query: 172 LDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYT 204
L ++LL V+NV E G Y C MS T
Sbjct: 2217 LTERHHLTPDNQLLVVQNVVAEDAGRYTCEMSNT 2318
>gb|AF336128.1|AF336128S1 Lumpy skin disease virus strain Neethling, 5' partial sequence
Length = 12518
Score = 59.3 bits (142), Expect = 1e-06
Identities = 68/305 (22%), Positives = 119/305 (38%), Gaps = 16/305 (5%)
Frame = -3
Query: 31 QIVLFLSVNEIDIRKCPLTPNKMHGDTIIWY---------KNDSKTPISADRDS-RIHQQ 80
Q V+ N +I KCP + T+ W+ D K +++ R++
Sbjct: 4902 QSVMKTFENNSEIVKCPYVDTLNYNTTVKWFLVNYNEYVKTGDVKKSFHEFKNTDRVYSV 4723
Query: 81 NEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGD 140
LW DSG Y C V NSTY + V + + + + I +
Sbjct: 4722 GHSLWINNITKNDSGIYACNVHNSTYYFTSSVMLDIYKKE-----------TINSVIGTN 4576
Query: 141 GSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICR 200
L+C F + N EV W K+ + + +N + K+KLL+RN+++ G Y+C
Sbjct: 4575 YELLCINTKNFINTFNCSYEVNWVKD-REKINNNFKYKKSKEKLLIRNISKSDEGVYLCS 4399
Query: 201 MSYTFR--GKQYPVTRVIQFITIDEN-KRDRPVILSPRNETIEADPGSMIQLI---CNVT 254
++ R K + R I + K D + ++ N TI +++ I N+
Sbjct: 4398 ITTATRCNPKNLALKRYYHNNVIKKRFKDDINLTVNFLNSTIALGKNFLMECIGESKNIQ 4219
Query: 255 GQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFI 314
+ ++W NG + D +++ Y + L I EVK ++ F
Sbjct: 4218 RVYRSSIFWLINGVNV--LDYDRSKNIYLGREMYVGNSYKI--ALIIKEVKRKYLSANFT 4051
Query: 315 CVVKN 319
C + N
Sbjct: 4050 CNLHN 4036
>ref|XM_033712.3| Homo sapiens ortholog of mouse integral membrane glycoprotein LIG-1
(LIG1), mRNA
Length = 5267
Score = 59.3 bits (142), Expect = 1e-06
Identities = 46/154 (29%), Positives = 69/154 (43%), Gaps = 3/154 (1%)
Frame = +2
Query: 54 HGDTIIWYKNDSKTPISADRDSRIH-QQNEHLWFVP-AKVEDSGYYYCIVRNSTYCLKTK 111
H + I ++ D T A R+ R+H ++ ++F+ K++D+G Y C +NS +
Sbjct: 2393 HPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKIDDAGVYSCTAQNSAGSISAN 2572
Query: 112 VTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLL 171
T+TVLE P L P + G V K N P + W+K +PL
Sbjct: 2573 ATLTVLET-PSL------VVPLEDRVVSVGETV---ALQCKATGNPPPRITWFKGDRPLS 2722
Query: 172 LDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYT 204
L ++LL V+NV E G Y C MS T
Sbjct: 2723 LTERHHLTPDNQLLVVQNVVAEDAGRYTCEMSNT 2824
>dbj|AB050468.1|AB050468 Homo sapiens mRNA for membrane glycoprotein LIG-1, complete cds
Length = 5287
Score = 59.3 bits (142), Expect = 1e-06
Identities = 46/154 (29%), Positives = 69/154 (43%), Gaps = 3/154 (1%)
Frame = +1
Query: 54 HGDTIIWYKNDSKTPISADRDSRIH-QQNEHLWFVP-AKVEDSGYYYCIVRNSTYCLKTK 111
H + I ++ D T A R+ R+H ++ ++F+ K++D+G Y C +NS +
Sbjct: 2392 HPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKIDDAGVYSCTAQNSAGSISAN 2571
Query: 112 VTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLL 171
T+TVLE P L P + G V K N P + W+K +PL
Sbjct: 2572 ATLTVLET-PSL------VVPLEDRVVSVGETV---ALQCKATGNPPPRITWFKGDRPLS 2721
Query: 172 LDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYT 204
L ++LL V+NV E G Y C MS T
Sbjct: 2722 LTERHHLTPDNQLLVVQNVVAEDAGRYTCEMSNT 2823
>gb|AF095689.1|AF095689 Vaccinia virus (strain Tian Tan) complete genome
Length = 189274
Score = 58.5 bits (140), Expect = 2e-06
Identities = 65/248 (26%), Positives = 103/248 (41%), Gaps = 12/248 (4%)
Frame = +1
Query: 39 NEIDIRKCPLTPNKMHGDTII---WYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDS 94
NE I CP G I+ W K AD D I N ++ + DS
Sbjct: 174934 NEPVILPCPQINTLSSGYNILDILWEKR------GADNDRIIPIDNGSNMLILNPTQSDS 175095
Query: 95 GYYYCIVRNSTYCLKTKVTVT---VLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYF 151
G Y CI N TYC + +T VLE++ L ++PQ ++ G +VCP ++ F
Sbjct: 175096 GIYICITTNETYCDMMSLNLTIVSVLESNIDLI-----SYPQIVNERSTGEMVCPNINAF 175260
Query: 152 KDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYP 211
N ++ W + + L + + + +V + G Y C + Y +RGK Y
Sbjct: 175261 IASNVNA-DIIWSGHRR--LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLEYIYRGKTYN 175431
Query: 212 VTRVIQFITIDENKRDRPVILSPRN--ETIEADPGSMIQLICNVTGQFSDL---VYWKWN 266
VTR+++ D+ +I S + I GS + + C V+ + V+W N
Sbjct: 175432 VTRIVKLEVRDK------IIPSTMQLPDGIVTSIGSNLTIACRVSLRPPTTDADVFWISN 175593
Query: 267 GSEIEWND 274
G E +D
Sbjct: 175594 GMYYEEDD 175617
Score = 37.4 bits (85), Expect = 4.0
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = +1
Query: 148 VSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSY-TFR 206
+ Y K NN + WYK+ K + +D++ + +L++ N E G Y C + Y R
Sbjct: 179320 ILYAKHYNN----ITWYKDNKEINIDDIKYSQTGKELIIHNPELEDSGRYDCYVHYDDVR 179487
Query: 207 GKQYPVTRVIQFITIDENKRDR-PVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKW 265
K V + +T+ ++ R +IL P+ +P ++ + + D++
Sbjct: 179488 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLIDDVL---- 179655
Query: 266 NGSEIEWNDP 275
IEW +P
Sbjct: 179656 ----IEWENP 179673
>gb|M35027.1|VACCG Vaccinia virus, complete genome
Length = 191737
Score = 58.2 bits (139), Expect = 2e-06
Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 8/244 (3%)
Frame = +2
Query: 39 NEIDIRKCPLTPNKMHGDTII---WYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDS 94
NE I CP G I+ W K AD D I N ++ + DS
Sbjct: 174284 NEPVILPCPQINTLSSGYNILDILWEKR------GADNDRIIPIDNGSNMLILNPTQSDS 174445
Query: 95 GYYYCIVRNSTYCLKTKVTVTVLE-NDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKD 153
G Y CI N TYC + +T++ ++ + + ++PQ ++ G +VCP ++ F
Sbjct: 174446 GIYICITTNETYCDMMSLNLTIVSVSESNIDF---ISYPQIVNERSTGEMVCPNINAFIA 174616
Query: 154 ENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVT 213
N ++ W + + L + + + +V + G Y C + Y + GK Y VT
Sbjct: 174617 SNVNA-DIIWSGHRR--LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLEYIYGGKTYNVT 174787
Query: 214 RVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDL---VYWKWNGSEI 270
R+++ D K P + P E + GS + + C V+ + V+W NG
Sbjct: 174788 RIVKLEVRD--KIIHPTMQLP--EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYY 174955
Query: 271 EWND 274
E +D
Sbjct: 174956 EEDD 174967
Score = 37.4 bits (85), Expect = 4.0
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = +2
Query: 148 VSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSY-TFR 206
+ Y K NN + WYK+ K + +D++ + +L++ N E G Y C + Y R
Sbjct: 178670 ILYAKHYNN----ITWYKDNKEINIDDIKYSQTGKELIIHNPELEDSGRYDCYVHYDDVR 178837
Query: 207 GKQYPVTRVIQFITIDENKRDR-PVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKW 265
K V + +T+ ++ R +IL P+ +P ++ + + D++
Sbjct: 178838 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLIDDVL---- 179005
Query: 266 NGSEIEWNDP 275
IEW +P
Sbjct: 179006 ----IEWENP 179023
>gb|BC010806.1|BC010806 Mus musculus, Similar to single Ig IL-1R-related protein, clone
MGC:18899 IMAGE:4240425, mRNA, complete cds
Length = 1568
Score = 55.5 bits (132), Expect = 1e-05
Identities = 52/202 (25%), Positives = 94/202 (45%), Gaps = 5/202 (2%)
Frame = +3
Query: 346 IILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD 405
+++ ++ +Y +++++LWY+D+ + + +DGK YDAY+ Y + F +
Sbjct: 492 LLVLVVLLLVALLYVKCRLNMLLWYQDT---YGEVEMNDGKLYDAYVSYSDCPEDRKFVN 662
Query: 406 LDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFS 465
F L P+ LE + GYKLF+ RD + N+ + RRLI++L
Sbjct: 663 -----FILKPQ-LERRRGYKLFLEDRDLLPRAEPSADLLVNLSRCRRLIVVLSDAFLSRP 824
Query: 466 WLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQ-KHGV--ICWSGDF 522
W QS E + L + I I + Q E + +++ ++Q +H V + W
Sbjct: 825 WCSQSFREGLCRLLELTRRPIFITF----EGQRREPIHPALRLLRQHRHLVTLVLW---- 980
Query: 523 QERPQSA--KTRFWKNLRYQMP 542
+P S + FWK L+ +P
Sbjct: 981 --KPGSVTPSSDFWKELQLALP 1040
>gb|U94848.1|U94848 Vaccinia virus strain Ankara, complete genomic sequence
Length = 177923
Score = 55.1 bits (131), Expect = 2e-05
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 12/248 (4%)
Frame = +3
Query: 39 NEIDIRKCPLTPNKMHGDTII---WYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDS 94
NE I CP G I+ W K AD D I N ++ + DS
Sbjct: 162141 NEPVILPCPQINTLSSGYNILDILWEKR------GADNDRIIPIDNGSNMLILNPTQSDS 162302
Query: 95 GYYYCIVRNSTYCLKTKVTVTVL---ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYF 151
G Y CI N TYC + +T++ E++ L ++PQ ++ G +VCP ++ F
Sbjct: 162303 GIYICITTNETYCDMMSLNLTIVSVSESNIDLI-----SYPQIVNERSTGEMVCPNINAF 162467
Query: 152 KDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYP 211
N ++ W + + L + + + +V + G Y C + Y + GK Y
Sbjct: 162468 IASNVNA-DIIWSGHRR--LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLEYIYGGKTYN 162638
Query: 212 VTRVIQFITIDENKRDRPVILSPRN--ETIEADPGSMIQLICNVTGQFSDL---VYWKWN 266
VTR+++ D+ +I S E + GS + + C V+ + V+W N
Sbjct: 162639 VTRIVKLEVRDK------IIPSTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISN 162800
Query: 267 GSEIEWND 274
G E +D
Sbjct: 162801 GMYYEEDD 162824
>emb|X56121.1|VVB15RG Vaccinia virus B15R gene for 36.5 kDa protein
Length = 1200
Score = 54.3 bits (129), Expect = 3e-05
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 12/248 (4%)
Frame = +1
Query: 39 NEIDIRKCPLTPNKMHGDTII---WYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDS 94
NE I CP G I+ W K AD D I N ++ + DS
Sbjct: 241 NEPVILPCPQINTLSSGYNILDILWEKR------GADNDRIIPIDNGSNMLILNPTQSDS 402
Query: 95 GYYYCIVRNSTYCLKTKVTVTVL---ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYF 151
G Y CI N TYC + +T++ E++ L ++PQ ++ G +VCP ++ F
Sbjct: 403 GIYICITTNETYCDMMSLNLTIVSVSESNIDLI-----SYPQIVNERSTGEMVCPNINAF 567
Query: 152 KDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYP 211
N ++ W + + L + + + +V + G Y C + Y + GK Y
Sbjct: 568 IASNVNA-DIIWSGHRR--LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLEYIYGGKTYN 738
Query: 212 VTRVIQFITIDENKRDRPVILSPRN--ETIEADPGSMIQLICNVTGQFSDL---VYWKWN 266
VTR+++ D+ +I S + I GS + + C V+ + V+W N
Sbjct: 739 VTRIVKLEVRDK------IIPSTMQLPDGIVTSIGSNLTIACRVSLRPPTTDADVFWISN 900
Query: 267 GSEIEWND 274
G E +D
Sbjct: 901 GMYYEEDD 924
>dbj|D01018.1|VACB15RW Vaccinia virus DNA for B15R protein, complete cds
Length = 1200
Score = 54.3 bits (129), Expect = 3e-05
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 12/248 (4%)
Frame = +1
Query: 39 NEIDIRKCPLTPNKMHGDTII---WYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDS 94
NE I CP G I+ W K AD D I N ++ + DS
Sbjct: 241 NEPVILPCPQINTLSSGYNILDILWEKR------GADNDRIIPIDNGSNMLILNPTQSDS 402
Query: 95 GYYYCIVRNSTYCLKTKVTVTVL---ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYF 151
G Y CI N TYC + +T++ E++ L ++PQ ++ G +VCP ++ F
Sbjct: 403 GIYICITTNETYCDMMSLNLTIVSVSESNIDLI-----SYPQIVNERSTGEMVCPNINAF 567
Query: 152 KDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYP 211
N ++ W + + L + + + +V + G Y C + Y + GK Y
Sbjct: 568 IASNVNA-DIIWSGHRR--LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLEYIYGGKTYN 738
Query: 212 VTRVIQFITIDENKRDRPVILSPRN--ETIEADPGSMIQLICNVTGQFSDL---VYWKWN 266
VTR+++ D+ +I S + I GS + + C V+ + V+W N
Sbjct: 739 VTRIVKLEVRDK------IIPSTMQLPDGIVTSIGSNLTIACRVSLRPPTTDADVFWISN 900
Query: 267 GSEIEWND 274
G E +D
Sbjct: 901 GMYYEEDD 924
>emb|AL031575.1|HS127F18 Human DNA sequence from clone 127F18 on chromosome Xp11.4-21.3.
Contains part of a novel gene with some similarity to
parts of chicken Myosin Light Chain and various species'
Interleukin-1 Receptor Type 1 (IL1-R-1). Contains GSSs,
complete sequence [H>
Length = 77439
Score = 54.3 bits (129), Expect = 3e-05
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +2
Query: 102 RNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEV 161
RNSTYC+K +++TV END GLCY+++ + ++ ++ + C + F E PE+
Sbjct: 54308 RNSTYCMKVSISLTVGENDTGLCYNSKMKYFEKAELSKSKEISCRDIEDFLLPTRE-PEI 54484
Query: 162 QWYK 165
WYK
Sbjct: 54485 LWYK 54496
>ref|XM_093169.1| Homo sapiens similar to dA127F18.1 (PUTATIVE novel protein with
some similarity to parts of chicken Myosin Light Chain
and various species Interleukin-1 Receptor Type 1
(IL1-R-1)) (LOC170191), mRNA
Length = 427
Score = 54.3 bits (129), Expect = 3e-05
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +2
Query: 102 RNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEV 161
RNSTYC+K +++TV END GLCY+++ + ++ ++ + C + F E PE+
Sbjct: 215 RNSTYCMKVSISLTVGENDTGLCYNSKMKYFEKAELSKSKEISCRDIEDFLLPTRE-PEI 391
Query: 162 QWYK 165
WYK
Sbjct: 392 LWYK 403
>dbj|D11079.1|VACRHF Vaccinia virus genomic DNA, 42kbp from near the right ITR
Length = 42090
Score = 54.3 bits (129), Expect = 3e-05
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 12/248 (4%)
Frame = +3
Query: 39 NEIDIRKCPLTPNKMHGDTII---WYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDS 94
NE I CP G I+ W K AD D I N ++ + DS
Sbjct: 33222 NEPVILPCPQINTLSSGYNILDILWEKR------GADNDRIIPIDNGSNMLILNPTQSDS 33383
Query: 95 GYYYCIVRNSTYCLKTKVTVTVL---ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYF 151
G Y CI N TYC + +T++ E++ L ++PQ ++ G +VCP ++ F
Sbjct: 33384 GIYICITTNETYCDMMSLNLTIVSVSESNIDLI-----SYPQIVNERSTGEMVCPNINAF 33548
Query: 152 KDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYP 211
N ++ W + + L + + + +V + G Y C + Y + GK Y
Sbjct: 33549 IASNVNA-DIIWSGHRR--LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLEYIYGGKTYN 33719
Query: 212 VTRVIQFITIDENKRDRPVILSPRN--ETIEADPGSMIQLICNVTGQFSDL---VYWKWN 266
VTR+++ D+ +I S + I GS + + C V+ + V+W N
Sbjct: 33720 VTRIVKLEVRDK------IIPSTMQLPDGIVTSIGSNLTIACRVSLRPPTTDADVFWISN 33881
Query: 267 GSEIEWND 274
G E +D
Sbjct: 33882 GMYYEEDD 33905
Score = 37.4 bits (85), Expect = 4.0
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = +3
Query: 148 VSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSY-TFR 206
+ Y K NN + WYK+ K + +D++ + +L++ N E G Y C + Y R
Sbjct: 37605 ILYAKHYNN----ITWYKDNKEINIDDIKYSQTGKELIIHNPELEDSGRYDCYVHYDDVR 37772
Query: 207 GKQYPVTRVIQFITIDENKRDR-PVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKW 265
K V + +T+ ++ R +IL P+ +P ++ + + D++
Sbjct: 37773 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLIDDVL---- 37940
Query: 266 NGSEIEWNDP 275
IEW +P
Sbjct: 37941 ----IEWENP 37958
>ref|XM_046808.4| Homo sapiens KIAA0756 protein (KIAA0756), mRNA
Length = 4982
Score = 53.5 bits (127), Expect = 5e-05
Identities = 56/229 (24%), Positives = 87/229 (37%), Gaps = 11/229 (4%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQ-QNEHLWFVPAKVEDSG----------YYYCIVRNSTY 106
+I++ + S PI+ D+ R+ Q N L+F ++D + + I + + +
Sbjct: 697 VIFWMSSSMEPITQDK--RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 870
Query: 107 CLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKN 166
LK T V E P Y Q T ++ + G L+ S P++ WYK
Sbjct: 871 TLKVLTTRGVAERTPSFMYP-QGTASSQMVLRGMDLLLECIAS-----GVPTPDIAWYKK 1032
Query: 167 CKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKR 226
L D F L + NV+EE G+Y C S ++ TI +
Sbjct: 1033GGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH---------TISVRVK 1185
Query: 227 DRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDP 275
P L I A PG +L+C G V W NG ++ P
Sbjct: 1186AAPYWLDEPKNLILA-PGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPP 1329
Score = 47.8 bits (112), Expect = 0.003
Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 4/214 (1%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
I WYK P +D+ ++ N+ L EDSG Y+C+ N ++ ++V V
Sbjct: 1015 IAWYKKGGDLP--SDK-AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 1185
Query: 118 ENDPGLCYSTQATFPQRLHIAG--DGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL--D 173
L P+ L +A DG LVC + N P VQW N +PL
Sbjct: 1186 AAPYWL------DEPKNLILAPGEDGRLVC------RANGNPKPTVQWMVNGEPLQSAPP 1329
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
N + D ++ R+ R Y C S ++ F+++ + P +LS
Sbjct: 1330 NPNREVAGDTIIFRDTQISSRAVYQCNTS-----NEHGYLLANAFVSVLDVP---PRMLS 1485
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNG 267
PRN+ I + +L C G + W NG
Sbjct: 1486 PRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNG 1587
>gb|L11002.1|RATANKBIND Rat ankyrin binding glycoprotein-1 related mRNA sequence
Length = 5822
Score = 53.1 bits (126), Expect = 7e-05
Identities = 56/229 (24%), Positives = 87/229 (37%), Gaps = 11/229 (4%)
Frame = +2
Query: 58 IIWYKNDSKTPISADRDSRIHQ-QNEHLWFVPAKVEDSG----------YYYCIVRNSTY 106
+I++ + S PI+ D+ R+ Q N L+F ++D + + I + + +
Sbjct: 1553 VIFWMSSSMEPITQDK--RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 1726
Query: 107 CLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKN 166
LK T V E P Y Q T ++ + G L+ S P++ WYK
Sbjct: 1727 TLKVLTTRGVAERTPSFMYP-QGTSSSQMVLRGMDLLLECIAS-----GVPTPDIAWYKK 1888
Query: 167 CKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKR 226
L D F L + NV+EE G+Y C S ++ TI +
Sbjct: 1889 GGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH---------TISVRVK 2041
Query: 227 DRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDP 275
P L I A PG +L+C G V W NG ++ P
Sbjct: 2042 AAPYWLDEPKNLILA-PGEDGRLVCRANGNPKPTVQWLVNGDPLQSAPP 2185
Score = 47.0 bits (110), Expect = 0.005
Identities = 55/214 (25%), Positives = 84/214 (38%), Gaps = 4/214 (1%)
Frame = +2
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
I WYK P +D+ ++ N+ L EDSG Y+C+ N ++ ++V V
Sbjct: 1871 IAWYKKGGDLP--SDK-AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 2041
Query: 118 ENDPGLCYSTQATFPQRLHIAG--DGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL--D 173
L P+ L +A DG LVC + N P VQW N PL
Sbjct: 2042 AAPYWL------DEPKNLILAPGEDGRLVC------RANGNPKPTVQWLVNGDPLQSAPP 2185
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
N + D ++ R+ R Y C S ++ F+++ + P +LS
Sbjct: 2186 NPNREVAGDTIIFRDTQISSRAVYQCNTS-----NEHGYLLANAFVSVLDVP---PRMLS 2341
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNG 267
PRN+ I + +L C G + W NG
Sbjct: 2342 PRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNG 2443
Score = 37.7 bits (86), Expect = 3.1
Identities = 44/173 (25%), Positives = 69/173 (39%)
Frame = +2
Query: 30 NQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPA 89
NQ++ + N + CP + + T+ W+KN + + D + QN L
Sbjct: 2348 NQLIRVILYNRTRL-DCPFFGSPI--PTLRWFKNGQGSNL--DGGNYHVYQNGSLEIKMI 2512
Query: 90 KVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVS 149
+ ED G Y C+ N + +V + V DP Y +A G+ V
Sbjct: 2513 RKEDQGIYTCVATNILGKAENQVRLEV--KDPTRIYRMPED-----QVAKRGTTVQLECR 2671
Query: 150 YFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMS 202
D + +L V W K+ +PL + N D L + VAE +G Y C S
Sbjct: 2672 VKHDPSLKLT-VSWLKDDEPLYIGN-RMKKEDDSLTIFGVAERDQGSYTCMAS 2824
>ref|NM_008377.1| Mus musculus integral membrane glycoprotein (Img), mRNA
Length = 4822
Score = 53.1 bits (126), Expect = 7e-05
Identities = 42/152 (27%), Positives = 66/152 (42%), Gaps = 3/152 (1%)
Frame = +1
Query: 54 HGDTIIWYKNDSKTPISADRDSRIH-QQNEHLWFVP-AKVEDSGYYYCIVRNSTYCLKTK 111
H + I ++ D T A R+ R+H ++ ++F+ K++D G Y C +NS +
Sbjct: 2332 HPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKIDDMGVYSCTAQNSAGSVSAN 2511
Query: 112 VTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLL 171
T+TVLE S R+ G+ K + P + W K +PL
Sbjct: 2512 ATLTVLETP-----SLAVPLEDRVVTVGE-----TVAFQCKATGSPTPRITWLKGGRPLS 2661
Query: 172 LDNVSFFGVKDKLL-VRNVAEEHRGDYICRMS 202
L F ++LL V+NV + G Y C MS
Sbjct: 2662 LTERHHFTPGNQLLVVQNVMIDDAGRYTCEMS 2757
>dbj|D78572.1|D78572 Mus musculus mRNA for membrane glycoprotein, complete cds
Length = 4822
Score = 53.1 bits (126), Expect = 7e-05
Identities = 42/152 (27%), Positives = 66/152 (42%), Gaps = 3/152 (1%)
Frame = +1
Query: 54 HGDTIIWYKNDSKTPISADRDSRIH-QQNEHLWFVP-AKVEDSGYYYCIVRNSTYCLKTK 111
H + I ++ D T A R+ R+H ++ ++F+ K++D G Y C +NS +
Sbjct: 2332 HPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKIDDMGVYSCTAQNSAGSVSAN 2511
Query: 112 VTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLL 171
T+TVLE S R+ G+ K + P + W K +PL
Sbjct: 2512 ATLTVLETP-----SLAVPLEDRVVTVGE-----TVAFQCKATGSPTPRITWLKGGRPLS 2661
Query: 172 LDNVSFFGVKDKLL-VRNVAEEHRGDYICRMS 202
L F ++LL V+NV + G Y C MS
Sbjct: 2662 LTERHHFTPGNQLLVVQNVMIDDAGRYTCEMS 2757
>gb|AF461119.1|AF461119 Xenopus laevis roundabout-1 (robo1) mRNA, complete cds
Length = 6435
Score = 53.1 bits (126), Expect = 7e-05
Identities = 94/405 (23%), Positives = 162/405 (39%), Gaps = 19/405 (4%)
Frame = +1
Query: 19 SLEIDVCTE--YPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSR 76
SLE+ + + N + ++V E + +C P + H + I +K D TPI D+D R
Sbjct: 898 SLEVAILRDDFRQNPSDVMVAVGEPAVMECQ--PPRGHPEPTISWKKDG-TPIDDDKDER 1068
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT-VTVLENDPGLCYSTQATFPQRL 135
I + L + D+G Y C+ N +++V +TVLE L P +
Sbjct: 1069 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFL------RRPSNM 1230
Query: 136 HIAGDGSLVCPYVSYFKDE--NNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAE 191
+ D S+ FK E + +P V+W K+ L S + ++D L +R V
Sbjct: 1231 AVTVDDSV------EFKCEARGDPVPTVRWRKDDGDL---PKSRYEIRDDHTLKIRKVTA 1383
Query: 192 EHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLIC 251
G Y C ++ GK +T+ E ++ PR++ + G + C
Sbjct: 1384 GDMGSYTC-VAENMVGK----AEASAVLTVQEPPN---FVVKPRDQVVAL--GRTVTFQC 1533
Query: 252 NVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITT--LNISEVKSQFY 309
TG ++W+ GS+ L YQ P + ++++ T L I+ V+
Sbjct: 1534 EATGNPQPAIFWQKEGSQ------NLLFSYQ---PPQSSSRFSVSQTGDLTITTVQKSDV 1686
Query: 310 RYPFICVVKN------TNIF-ESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y +IC N T F E V P P + + + + T++ CI
Sbjct: 1687 GY-YICQTLNVAGSITTKAFLEVTDVVADRPPPVIRQGPVNQTVAVDGTLL-MNCIASGI 1860
Query: 363 KVDIVLWYRDSCSGFLPSKASDGKTYDA---YILYPKTLGEGSFS 404
+ + W +D +P++ S K D+ I Y K G ++
Sbjct: 1861 PIPTIHWRKDGI--LIPTQDSRIKQQDSGALQIRYAKLSDTGRYT 1989
>gb|U81036.1|RNU81036 Rattus norvegicus ankyrin binding cell adhesion molecule
neurofascin mRNA, alternatively spliced form, partial
cds
Length = 3651
Score = 53.1 bits (126), Expect = 7e-05
Identities = 56/229 (24%), Positives = 87/229 (37%), Gaps = 11/229 (4%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQ-QNEHLWFVPAKVEDSG----------YYYCIVRNSTY 106
+I++ + S PI+ D+ R+ Q N L+F ++D + + I + + +
Sbjct: 442 VIFWMSSSMEPITQDK--RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 615
Query: 107 CLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKN 166
LK T V E P Y Q T ++ + G L+ S P++ WYK
Sbjct: 616 TLKVLTTRGVAERTPSFMYP-QGTSSSQMVLRGMDLLLECIAS-----GVPTPDIAWYKK 777
Query: 167 CKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKR 226
L D F L + NV+EE G+Y C S ++ TI +
Sbjct: 778 GGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH---------TISVRVK 930
Query: 227 DRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDP 275
P L I A PG +L+C G V W NG ++ P
Sbjct: 931 AAPYWLDEPKNLILA-PGEDGRLVCRANGNPKPTVQWLVNGDPLQSAPP 1074
Score = 47.0 bits (110), Expect = 0.005
Identities = 55/214 (25%), Positives = 84/214 (38%), Gaps = 4/214 (1%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
I WYK P +D+ ++ N+ L EDSG Y+C+ N ++ ++V V
Sbjct: 760 IAWYKKGGDLP--SDK-AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 930
Query: 118 ENDPGLCYSTQATFPQRLHIAG--DGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL--D 173
L P+ L +A DG LVC + N P VQW N PL
Sbjct: 931 AAPYWL------DEPKNLILAPGEDGRLVC------RANGNPKPTVQWLVNGDPLQSAPP 1074
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
N + D ++ R+ R Y C S ++ F+++ + P +LS
Sbjct: 1075NPNREVAGDTIIFRDTQISSRAVYQCNTS-----NEHGYLLANAFVSVLDVP---PRMLS 1230
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNG 267
PRN+ I + +L C G + W NG
Sbjct: 1231PRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNG 1332
Score = 37.7 bits (86), Expect = 3.1
Identities = 44/173 (25%), Positives = 69/173 (39%)
Frame = +1
Query: 30 NQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPA 89
NQ++ + N + CP + + T+ W+KN + + D + QN L
Sbjct: 1237 NQLIRVILYNRTRL-DCPFFGSPI--PTLRWFKNGQGSNL--DGGNYHVYQNGSLEIKMI 1401
Query: 90 KVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVS 149
+ ED G Y C+ N + +V + V DP Y +A G+ V
Sbjct: 1402 RKEDQGIYTCVATNILGKAENQVRLEV--KDPTRIYRMPED-----QVAKRGTTVQLECR 1560
Query: 150 YFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMS 202
D + +L V W K+ +PL + N D L + VAE +G Y C S
Sbjct: 1561 VKHDPSLKLT-VSWLKDDEPLYIGN-RMKKEDDSLTIFGVAERDQGSYTCMAS 1713
>gb|AF410153.1| Swinepox virus isolate 17077-99, complete genome
Length = 146454
Score = 53.1 bits (126), Expect = 7e-05
Identities = 75/324 (23%), Positives = 121/324 (37%), Gaps = 15/324 (4%)
Frame = +1
Query: 23 DVCTEYPNQIVLFLSVNEIDIRKCPLTPN-----KMHGDTIIWYKNDSKTPISADRDSRI 77
D CT Y FL E KCPL + K H TI+W K +R SR+
Sbjct: 126862 DNCT-YRGYRDFFLYNEEPANIKCPLLNDILLRQKYHNYTILWKK-------LGERSSRL 127017
Query: 78 HQQNEHLW--FVPAKVEDSGYYY-CIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQR 134
+ ++ F P K E G Y C++ + C + + + + ++P +CY
Sbjct: 127018 LNTHGSIFLDFFPYKSELRGSVYECMIILNNTCDQFILKLNDIRSNP-VCYHNDYKVHTN 127194
Query: 135 LHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHR 194
+ I C + N + + WYKN +++D + +LLV N
Sbjct: 127195 IEI------FCNVI------NLQYDYITWYKNNSEIIIDGYKYSNQSRRLLVYNTTYNDS 127338
Query: 195 GDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVT 254
G Y C +YT GK ++R ++I + I N T Q+ C
Sbjct: 127339 GIYYCN-AYTTHGKNTYISRRCSSVSIHSHSYYDFYIEHINNITYIDPDSENTQIYCKAI 127515
Query: 255 GQFSD---LVYWKWN-GSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYR 310
+ L+YW+ G I N + Y + ++ Y I L KS +YR
Sbjct: 127516 SYSNSSYILIYWEDEYGGYIYDNGIY---QYDNITLIGNEKVYMSILVLE----KSAYYR 127674
Query: 311 Y---PFICVVKNTNIFESAHVQLI 331
Y F C+ + + + L+
Sbjct: 127675 YVNNTFTCLATSVYVEKKTTTTLV 127746
>gb|AF239957.1|AF239957 Mus musculus single Ig IL-1R-related protein mRNA, complete cds
Length = 1421
Score = 52.8 bits (125), Expect = 9e-05
Identities = 51/202 (25%), Positives = 93/202 (45%), Gaps = 5/202 (2%)
Frame = +1
Query: 346 IILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSD 405
+++ ++ +Y +++++LWY+D+ + + +DGK YDAY+ Y + F +
Sbjct: 481 LLVLVVLLLVALLYVKCRLNMLLWYQDT---YGEVEMNDGKLYDAYVSYSDCPEDRKFVN 651
Query: 406 LDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFS 465
F L P+ LE + GYK F+ RD + N+ + RRLI++L
Sbjct: 652 -----FILKPQ-LERRRGYKPFLEDRDLLPRAEPSADLLVNLSRCRRLIVVLSDAFLSRP 813
Query: 466 WLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQ-KHGV--ICWSGDF 522
W QS E + L + I I + Q E + +++ ++Q +H V + W
Sbjct: 814 WCSQSFREGLCRLLELTRRPIFITF----EGQRREPIHPALRLLRQHRHLVTLVLW---- 969
Query: 523 QERPQSA--KTRFWKNLRYQMP 542
+P S + FWK L+ +P
Sbjct: 970 --KPGSVTPSSDFWKELQLALP 1029
>gb|M95202.1|PXRIL1XX Poxvirus interleukin-1 binding protein (IL1) gene, complete cds
Length = 1102
Score = 52.8 bits (125), Expect = 9e-05
Identities = 62/249 (24%), Positives = 104/249 (40%), Gaps = 13/249 (5%)
Frame = +3
Query: 39 NEIDIRKCPLTPNKMHGDTII---WYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDS 94
NE I CP G I+ W K AD D I N ++ + DS
Sbjct: 177 NEPVILPCPQINTISSGYNILDILWEKR------GADNDRIIPIDNGSNMLILNPTQSDS 338
Query: 95 GYYYCIVRNSTYCLKTKVTVTVL---ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYF 151
G Y CI +N TYC + +T++ E++ L ++ Q ++ G +VCP ++ F
Sbjct: 339 GIYICITKNETYCDMMSLNLTIVSVSESNIDL-----ISYTQIVNERTTGEMVCPNINAF 503
Query: 152 KDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYP 211
+N ++ W + + L + + + +V + G Y C + YT+ K Y
Sbjct: 504 -IASNVNADIIWSGHRR--LRNKRLRQRTPGIITIEDVRKNDAGYYTCVLKYTYGDKTYD 674
Query: 212 VTRVIQFITIDENKRDR---PVILSPRNETIEADPGSMIQLICNVTGQFSDL---VYWKW 265
VTR+++ RDR P + P + + GS + + C V+ + V+W
Sbjct: 675 VTRIVKL-----EVRDRMIPPTMQLP--DGVVTSIGSNLTIACRVSLRPPTTDADVFWIS 833
Query: 266 NGSEIEWND 274
NG E +D
Sbjct: 834 NGMYYEEDD 860
>emb|Z95705.1|HSDUTT1 Human DNA sequence from cDNA DUTT1 on chromosome 3
Length = 6789
Score = 50.8 bits (120), Expect = 4e-04
Identities = 83/370 (22%), Positives = 150/370 (40%), Gaps = 16/370 (4%)
Frame = +1
Query: 19 SLEIDVCTE--YPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSR 76
SLE+ + + N + ++V E + +C P + H + I +K D +P+ D+D R
Sbjct: 1330 SLEVAILRDDFRQNPSDVMVAVGEPAVMECQ--PPRGHPEPTISWKKDG-SPLD-DKDER 1497
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT-VTVLENDPGLCYSTQATFPQRL 135
I + L + D+G Y C+ N +++V +TVLE + P L
Sbjct: 1498 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER------PSFVKRPSNL 1659
Query: 136 HIAGDGSLVCPYVSYFKDE--NNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAE 191
+ D S + FK E + +P V+W K+ L S + ++D L +R V
Sbjct: 1660 AVTVDDS------AEFKCEARGDPVPTVRWRKDDGEL---PKSRYEIRDDHTLKIRKVTA 1812
Query: 192 EHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLIC 251
G Y C ++ GK +T+ ++ PR++ + G + C
Sbjct: 1813 GDMGSYTC-VAENMVGK----AEASATLTVQVGSEPPHFVVKPRDQVVAL--GRTVTFQC 1971
Query: 252 NVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITT--LNISEVKSQFY 309
TG ++W+ GS+ L YQ P + ++++ T L I+ V+
Sbjct: 1972 EATGNPQPAIFWRREGSQ------NLLFSYQ---PPQSSSRFSVSQTGDLTITNVQRSDV 2124
Query: 310 RYPFICVVKNT--NIFESAHVQLI-----YPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y +IC N +I A++++ P P + + + + T V C+
Sbjct: 2125 GY-YICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTFVLS-CVATGS 2298
Query: 363 KVDIVLWYRD 372
V +LW +D
Sbjct: 2299 PVPTILWRKD 2328
>ref|NM_008011.1| Mus musculus fibroblast growth factor receptor 4 (Fgfr4), mRNA
Length = 3098
Score = 50.1 bits (118), Expect = 6e-04
Identities = 72/285 (25%), Positives = 111/285 (38%), Gaps = 34/285 (11%)
Frame = +3
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNS-------TYCLKTKV 112
WYK S+ SA R + E F+P ED+G Y C+ R S T + +
Sbjct: 291 WYKEGSRLA-SAGRVRGWRGRLEIASFLP---EDAGRYLCLARGSMTVVHNLTLLMDDSL 458
Query: 113 TVTVLENDP--------GLCYSTQA---TFPQR----LHIAGDGSLV---CPYVSYFKDE 154
T + DP G Y QA T PQR LH G+ V CP
Sbjct: 459 TSISNDEDPKTLSSSSSGHVYPQQAPYWTHPQRMEKKLHAVPAGNTVKFRCPAC------ 620
Query: 155 NNELPEVQWYKNCKPLLLDNVSFFGVKDK-----LLVRNVAEEHRGDYICRMSYTFRGKQ 209
N +P + W K+ + +N G++ + L++ +V RG Y C + + +
Sbjct: 621 RNPMPTIHWLKDGQAFHGEN-RIGGIRLRHQHWSLVMESVVPSDRGTYTCLVENSLGSIR 797
Query: 210 YPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYW----KW 265
Y + + E RP++ + A GS ++L+C V + W
Sbjct: 798 YSY-----LLDVLERSPHRPILQAGLPANTTAVVGSDVELLCKVYSDAQPHIQWLKHVVI 962
Query: 266 NGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYR 310
NGS F A+ + +V+ T T +NISEV+ + R
Sbjct: 963 NGSS------FGADGFPYVQVLKT-------TDINISEVQVLYLR 1058
Score = 43.1 bits (100), Expect = 0.073
Identities = 49/182 (26%), Positives = 71/182 (38%), Gaps = 27/182 (14%)
Frame = +3
Query: 45 KCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKV--EDSGYYYCIVR 102
+CP N M TI W K D + +R I +++H V V D G Y C+V
Sbjct: 606 RCPACRNPM--PTIHWLK-DGQAFHGENRIGGIRLRHQHWSLVMESVVPSDRGTYTCLVE 776
Query: 103 NSTYCLKTKVTVTVLENDP-------GLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDEN 155
NS ++ + VLE P GL +T A + D L+C K +
Sbjct: 777 NSLGSIRYSYLLDVLERSPHRPILQAGLPANTTAV------VGSDVELLC------KVYS 920
Query: 156 NELPEVQWYKNCKPLLLDNVSFFGVK------------------DKLLVRNVAEEHRGDY 197
+ P +QW K+ ++ N S FG L +RNV+ E G+Y
Sbjct: 921 DAQPHIQWLKH----VVINGSSFGADGFPYVQVLKTTDINISEVQVLYLRNVSAEDAGEY 1088
Query: 198 IC 199
C
Sbjct: 1089TC 1094
>emb|X59927.1|MMFGFR4M M.musculus mRNA for fibroblast growth facter receptor 4 (FGFR-4)
Length = 3098
Score = 50.1 bits (118), Expect = 6e-04
Identities = 72/285 (25%), Positives = 111/285 (38%), Gaps = 34/285 (11%)
Frame = +3
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNS-------TYCLKTKV 112
WYK S+ SA R + E F+P ED+G Y C+ R S T + +
Sbjct: 291 WYKEGSRLA-SAGRVRGWRGRLEIASFLP---EDAGRYLCLARGSMTVVHNLTLLMDDSL 458
Query: 113 TVTVLENDP--------GLCYSTQA---TFPQR----LHIAGDGSLV---CPYVSYFKDE 154
T + DP G Y QA T PQR LH G+ V CP
Sbjct: 459 TSISNDEDPKTLSSSSSGHVYPQQAPYWTHPQRMEKKLHAVPAGNTVKFRCPAC------ 620
Query: 155 NNELPEVQWYKNCKPLLLDNVSFFGVKDK-----LLVRNVAEEHRGDYICRMSYTFRGKQ 209
N +P + W K+ + +N G++ + L++ +V RG Y C + + +
Sbjct: 621 RNPMPTIHWLKDGQAFHGEN-RIGGIRLRHQHWSLVMESVVPSDRGTYTCLVENSLGSIR 797
Query: 210 YPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYW----KW 265
Y + + E RP++ + A GS ++L+C V + W
Sbjct: 798 YSY-----LLDVLERSPHRPILQAGLPANTTAVVGSDVELLCKVYSDAQPHIQWLKHVVI 962
Query: 266 NGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYR 310
NGS F A+ + +V+ T T +NISEV+ + R
Sbjct: 963 NGSS------FGADGFPYVQVLKT-------TDINISEVQVLYLR 1058
Score = 43.1 bits (100), Expect = 0.073
Identities = 49/182 (26%), Positives = 71/182 (38%), Gaps = 27/182 (14%)
Frame = +3
Query: 45 KCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKV--EDSGYYYCIVR 102
+CP N M TI W K D + +R I +++H V V D G Y C+V
Sbjct: 606 RCPACRNPM--PTIHWLK-DGQAFHGENRIGGIRLRHQHWSLVMESVVPSDRGTYTCLVE 776
Query: 103 NSTYCLKTKVTVTVLENDP-------GLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDEN 155
NS ++ + VLE P GL +T A + D L+C K +
Sbjct: 777 NSLGSIRYSYLLDVLERSPHRPILQAGLPANTTAV------VGSDVELLC------KVYS 920
Query: 156 NELPEVQWYKNCKPLLLDNVSFFGVK------------------DKLLVRNVAEEHRGDY 197
+ P +QW K+ ++ N S FG L +RNV+ E G+Y
Sbjct: 921 DAQPHIQWLKH----VVINGSSFGADGFPYVQVLKTTDINISEVQVLYLRNVSAEDAGEY 1088
Query: 198 IC 199
C
Sbjct: 1089TC 1094
>ref|NM_077235.1| Ig superfamily repeats (I-type)
Length = 15528
Score = 49.7 bits (117), Expect = 8e-04
Identities = 57/222 (25%), Positives = 89/222 (39%), Gaps = 7/222 (3%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
++ W++ I D + + + L A VED+ Y C N + + VTV
Sbjct: 4177 SVTWFRRG--IAIGTDTKGYVVESDGTLVIQSASVEDATIYTCKASNPAGKAEANLQVTV 4350
Query: 117 LEN----DPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
+ + DP + TQ + + + SL CP S N LP++ WY N KPL+
Sbjct: 4351 IASPDIKDPDVV--TQESIKE----SHPFSLYCPVFS------NPLPQISWYLNDKPLID 4494
Query: 173 DNVSFFGVKD--KLLVRNVAEEHRGDYIC-RMSYTFRGKQYPVTRVIQFITIDENKRDRP 229
D S+ D KL V G Y C + G + VI + +DE+K +
Sbjct: 4495 DKTSWKTSDDKRKLHVFKAKITDSGVYKCVARNAAGEGSKSFQVEVIVPLNLDESKYKKK 4674
Query: 230 VILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
V A G + L C V+G + W +G+ +E
Sbjct: 4675 VF---------AKEGEEVTLGCPVSGFPVPQINWVVDGTVVE 4773
Score = 43.1 bits (100), Expect = 0.073
Identities = 60/285 (21%), Positives = 108/285 (37%), Gaps = 21/285 (7%)
Frame = +1
Query: 45 KCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQ--QNEHLWFVPAKVEDSGYYYCIVR 102
KCP+ +K IIW +N + A+ D+RI + + L + D G Y C V+
Sbjct: 6631 KCPIDDDKNFKGQIIWLRNYQPIDLEAE-DARITRLSNDRRLTILNVTENDEGQYSCRVK 6807
Query: 103 N----STYCLKTKV----TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDE 154
N +++ K V T+ +L+ D +T +L CP K E
Sbjct: 6808 NDAGENSFDFKATVLVPPTIIMLDKDKNKTAVEHSTV----------TLSCPATG--KPE 6951
Query: 155 NNELPEVQWYKNCKPLLLDNVSFFGVK-----DKLLVRNVAEEHRGDYICRMSYTFRGKQ 209
P++ W+K+ + + ++N++ ++L + + E G Y C + +
Sbjct: 6952 ----PDITWFKDGEAIHIENIADIIPNGELNGNQLKITRIKEGDAGKYTCEADNSAGSVE 7119
Query: 210 YPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSE 269
V + ITI + ++D E+ + + C V + + W G
Sbjct: 7120 QDVN--VNVITIPKIEKD------GIPSDYESQQNERVVISCPVYARPPAKITWLKAGKP 7275
Query: 270 IEWNDPFLAED------YQFVEHPSTKRKYTLITTLNISEVKSQF 308
++ +D F+ Y F + KYT I T K F
Sbjct: 7276 LQ-SDKFVKTSANGQKLYLFKLRETDSSKYTCIATNEAGTDKRDF 7407
Score = 41.2 bits (95), Expect = 0.28
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 1/250 (0%)
Frame = +1
Query: 45 KCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNS 104
+CP+ G I W + K D ++ L+ + A ED+ Y CI N
Sbjct: 8887 ECPIEDTS--GVHITWSRQFGKDG-QLDMRAQSSSDKSKLYIMQATPEDADSYSCIAVND 9057
Query: 105 TYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWY 164
+ VTV N P + + + I D +L P + E PE+ W+
Sbjct: 9058 AGGAEAVFQVTV--NTPPKIFGDSFSTTE---IVADTTLEIPC----RTEGIPPPEISWF 9210
Query: 165 KNCKPLL-LDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDE 223
+ KP+L + V++ L + N+ G Y C ++ G+ T ++ I E
Sbjct: 9211 LDGKPILEMPGVTYKQGDLSLRIDNIKPNQEGRYTC-VAENKAGRAEQDT----YVEISE 9375
Query: 224 NKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQF 283
R V+++ +E + G + C V G +V W +G +P+ ++ QF
Sbjct: 9376 PPR---VVMA--SEVMRVVEGRQTTIRCEVFGNPEPVVNWLKDG------EPYTSDLLQF 9522
Query: 284 VEHPSTKRKY 293
STK Y
Sbjct: 9523 ----STKLSY 9540
Score = 40.8 bits (94), Expect = 0.36
Identities = 32/122 (26%), Positives = 47/122 (38%)
Frame = +1
Query: 156 NELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRV 215
N P V W K+ +P D + F L +R G Y C ++ G+ T V
Sbjct: 9457 NPEPVVNWLKDGEPYTSDLLQFSTKLSYLHLRETTLADGGTYTC-IATNKAGESQTTTDV 9633
Query: 216 IQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDP 275
+ P + ++ G+ + C VTG+ V WK NG EIE +P
Sbjct: 9634 EVLV---------PPRIEDEERVLQGKEGNTYMVHCQVTGRPVPYVTWKRNGKEIEQFNP 9786
Query: 276 FL 277
L
Sbjct: 9787 VL 9792
Score = 40.8 bits (94), Expect = 0.36
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 6/194 (3%)
Frame = +1
Query: 84 LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLE-----NDPGLCYSTQATFPQRLHIA 138
L F V+ G Y+C+ ++ L V ++VL D L + +
Sbjct: 4822 LHFDSVSVKQEGNYHCVAQSKGNILDIDVELSVLAVPIVGEDDNL----------EVFLG 4971
Query: 139 GDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYI 198
D SL C + D+ + + ++ +P DNV +L + + E+ G Y+
Sbjct: 4972 KDISLSCDLQTESDDKTTFVWSINGSESDRP---DNVQIPSDGHRLYITDAKPENNGKYM 5142
Query: 199 CRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSM-IQLICNVTGQF 257
CR++ + + + +T+D + PV + P E + G+ I L C VTG
Sbjct: 5143 CRVTNS-------AGKAERTLTLDV--LEPPVFVEPVFEANQKLIGNNPIILQCQVTGNP 5295
Query: 258 SDLVYWKWNGSEIE 271
V WK +G++++
Sbjct: 5296 KPTVIWKIDGNDVD 5337
>dbj|AK018522.1|AK018522 Mus musculus adult male colon cDNA, RIKEN full-length enriched
library, clone:9030421L11:similar to MEMBRANE
GLYCOPROTEIN, full insert sequence
Length = 2530
Score = 49.7 bits (117), Expect = 8e-04
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 3/150 (2%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIH--QQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVT 115
I W K D T A R+ R+H +++ + V K+ED G Y C +NS + T+T
Sbjct: 970 IAWQK-DGGTDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSVSANATLT 1146
Query: 116 VLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNV 175
VLE S R G+ +++ + P + W K+ PL++
Sbjct: 1147 VLETP-----SFLRPLLDRTVTKGETAVLQCIAG-----GSPPPRLNWTKDDSPLVVTER 1296
Query: 176 SFFGVKDKLLVRNVAE-EHRGDYICRMSYT 204
FF ++LL+ ++ G Y C MS T
Sbjct: 1297 HFFAAGNQLLIIVDSDVSDAGKYTCEMSNT 1386
>ref|NM_077234.1| IG (immunoglobulin) superfamily (47 domains)
Length = 15597
Score = 49.7 bits (117), Expect = 8e-04
Identities = 57/222 (25%), Positives = 89/222 (39%), Gaps = 7/222 (3%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
++ W++ I D + + + L A VED+ Y C N + + VTV
Sbjct: 4177 SVTWFRRG--IAIGTDTKGYVVESDGTLVIQSASVEDATIYTCKASNPAGKAEANLQVTV 4350
Query: 117 LEN----DPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
+ + DP + TQ + + + SL CP S N LP++ WY N KPL+
Sbjct: 4351 IASPDIKDPDVV--TQESIKE----SHPFSLYCPVFS------NPLPQISWYLNDKPLID 4494
Query: 173 DNVSFFGVKD--KLLVRNVAEEHRGDYIC-RMSYTFRGKQYPVTRVIQFITIDENKRDRP 229
D S+ D KL V G Y C + G + VI + +DE+K +
Sbjct: 4495 DKTSWKTSDDKRKLHVFKAKITDSGVYKCVARNAAGEGSKSFQVEVIVPLNLDESKYKKK 4674
Query: 230 VILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
V A G + L C V+G + W +G+ +E
Sbjct: 4675 VF---------AKEGEEVTLGCPVSGFPVPQINWVVDGTVVE 4773
Score = 43.1 bits (100), Expect = 0.073
Identities = 60/285 (21%), Positives = 108/285 (37%), Gaps = 21/285 (7%)
Frame = +1
Query: 45 KCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQ--QNEHLWFVPAKVEDSGYYYCIVR 102
KCP+ +K IIW +N + A+ D+RI + + L + D G Y C V+
Sbjct: 6631 KCPIDDDKNFKGQIIWLRNYQPIDLEAE-DARITRLSNDRRLTILNVTENDEGQYSCRVK 6807
Query: 103 N----STYCLKTKV----TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDE 154
N +++ K V T+ +L+ D +T +L CP K E
Sbjct: 6808 NDAGENSFDFKATVLVPPTIIMLDKDKNKTAVEHSTV----------TLSCPATG--KPE 6951
Query: 155 NNELPEVQWYKNCKPLLLDNVSFFGVK-----DKLLVRNVAEEHRGDYICRMSYTFRGKQ 209
P++ W+K+ + + ++N++ ++L + + E G Y C + +
Sbjct: 6952 ----PDITWFKDGEAIHIENIADIIPNGELNGNQLKITRIKEGDAGKYTCEADNSAGSVE 7119
Query: 210 YPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSE 269
V + ITI + ++D E+ + + C V + + W G
Sbjct: 7120 QDVN--VNVITIPKIEKD------GIPSDYESQQNERVVISCPVYARPPAKITWLKAGKP 7275
Query: 270 IEWNDPFLAED------YQFVEHPSTKRKYTLITTLNISEVKSQF 308
++ +D F+ Y F + KYT I T K F
Sbjct: 7276 LQ-SDKFVKTSANGQKLYLFKLRETDSSKYTCIATNEAGTDKRDF 7407
Score = 41.2 bits (95), Expect = 0.28
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 1/250 (0%)
Frame = +1
Query: 45 KCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNS 104
+CP+ G I W + K D ++ L+ + A ED+ Y CI N
Sbjct: 8887 ECPIEDTS--GVHITWSRQFGKDG-QLDMRAQSSSDKSKLYIMQATPEDADSYSCIAVND 9057
Query: 105 TYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWY 164
+ VTV N P + + + I D +L P + E PE+ W+
Sbjct: 9058 AGGAEAVFQVTV--NTPPKIFGDSFSTTE---IVADTTLEIPC----RTEGIPPPEISWF 9210
Query: 165 KNCKPLL-LDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDE 223
+ KP+L + V++ L + N+ G Y C ++ G+ T ++ I E
Sbjct: 9211 LDGKPILEMPGVTYKQGDLSLRIDNIKPNQEGRYTC-VAENKAGRAEQDT----YVEISE 9375
Query: 224 NKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQF 283
R V+++ +E + G + C V G +V W +G +P+ ++ QF
Sbjct: 9376 PPR---VVMA--SEVMRVVEGRQTTIRCEVFGNPEPVVNWLKDG------EPYTSDLLQF 9522
Query: 284 VEHPSTKRKY 293
STK Y
Sbjct: 9523 ----STKLSY 9540
Score = 40.8 bits (94), Expect = 0.36
Identities = 32/122 (26%), Positives = 47/122 (38%)
Frame = +1
Query: 156 NELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRV 215
N P V W K+ +P D + F L +R G Y C ++ G+ T V
Sbjct: 9457 NPEPVVNWLKDGEPYTSDLLQFSTKLSYLHLRETTLADGGTYTC-IATNKAGESQTTTDV 9633
Query: 216 IQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDP 275
+ P + ++ G+ + C VTG+ V WK NG EIE +P
Sbjct: 9634 EVLV---------PPRIEDEERVLQGKEGNTYMVHCQVTGRPVPYVTWKRNGKEIEQFNP 9786
Query: 276 FL 277
L
Sbjct: 9787 VL 9792
Score = 40.8 bits (94), Expect = 0.36
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 6/194 (3%)
Frame = +1
Query: 84 LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLE-----NDPGLCYSTQATFPQRLHIA 138
L F V+ G Y+C+ ++ L V ++VL D L + +
Sbjct: 4822 LHFDSVSVKQEGNYHCVAQSKGNILDIDVELSVLAVPIVGEDDNL----------EVFLG 4971
Query: 139 GDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYI 198
D SL C + D+ + + ++ +P DNV +L + + E+ G Y+
Sbjct: 4972 KDISLSCDLQTESDDKTTFVWSINGSESDRP---DNVQIPSDGHRLYITDAKPENNGKYM 5142
Query: 199 CRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSM-IQLICNVTGQF 257
CR++ + + + +T+D + PV + P E + G+ I L C VTG
Sbjct: 5143 CRVTNS-------AGKAERTLTLDV--LEPPVFVEPVFEANQKLIGNNPIILQCQVTGNP 5295
Query: 258 SDLVYWKWNGSEIE 271
V WK +G++++
Sbjct: 5296 KPTVIWKIDGNDVD 5337
>gb|AF074901.1|AF074901 Caenorhabditis elegans hemicentin precursor (him-4) mRNA, complete
cds
Length = 15597
Score = 49.7 bits (117), Expect = 8e-04
Identities = 57/222 (25%), Positives = 89/222 (39%), Gaps = 7/222 (3%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
++ W++ I D + + + L A VED+ Y C N + + VTV
Sbjct: 4177 SVTWFRRG--IAIGTDTKGYVVESDGTLVIQSASVEDATIYTCKASNPAGKAEANLQVTV 4350
Query: 117 LEN----DPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
+ + DP + TQ + + + SL CP S N LP++ WY N KPL+
Sbjct: 4351 IASPDIKDPDVV--TQESIKE----SHPFSLYCPVFS------NPLPQISWYLNDKPLID 4494
Query: 173 DNVSFFGVKD--KLLVRNVAEEHRGDYIC-RMSYTFRGKQYPVTRVIQFITIDENKRDRP 229
D S+ D KL V G Y C + G + VI + +DE+K +
Sbjct: 4495 DKTSWKTSDDKRKLHVFKAKITDSGVYKCVARNAAGEGSKSFQVEVIVPLNLDESKYKKK 4674
Query: 230 VILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
V A G + L C V+G + W +G+ +E
Sbjct: 4675 VF---------AKEGEEVTLGCPVSGFPVPQINWVVDGTVVE 4773
Score = 43.1 bits (100), Expect = 0.073
Identities = 60/285 (21%), Positives = 108/285 (37%), Gaps = 21/285 (7%)
Frame = +1
Query: 45 KCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQ--QNEHLWFVPAKVEDSGYYYCIVR 102
KCP+ +K IIW +N + A+ D+RI + + L + D G Y C V+
Sbjct: 6631 KCPIDDDKNFKGQIIWLRNYQPIDLEAE-DARITRLSNDRRLTILNVTENDEGQYSCRVK 6807
Query: 103 N----STYCLKTKV----TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDE 154
N +++ K V T+ +L+ D +T +L CP K E
Sbjct: 6808 NDAGENSFDFKATVLVPPTIIMLDKDKNKTAVEHSTV----------TLSCPATG--KPE 6951
Query: 155 NNELPEVQWYKNCKPLLLDNVSFFGVK-----DKLLVRNVAEEHRGDYICRMSYTFRGKQ 209
P++ W+K+ + + ++N++ ++L + + E G Y C + +
Sbjct: 6952 ----PDITWFKDGEAIHIENIADIIPNGELNGNQLKITRIKEGDAGKYTCEADNSAGSVE 7119
Query: 210 YPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSE 269
V + ITI + ++D E+ + + C V + + W G
Sbjct: 7120 QDVN--VNVITIPKIEKD------GIPSDYESQQNERVVISCPVYARPPAKITWLKAGKP 7275
Query: 270 IEWNDPFLAED------YQFVEHPSTKRKYTLITTLNISEVKSQF 308
++ +D F+ Y F + KYT I T K F
Sbjct: 7276 LQ-SDKFVKTSANGQKLYLFKLRETDSSKYTCIATNEAGTDKRDF 7407
Score = 41.2 bits (95), Expect = 0.28
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 1/250 (0%)
Frame = +1
Query: 45 KCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNS 104
+CP+ G I W + K D ++ L+ + A ED+ Y CI N
Sbjct: 8887 ECPIEDTS--GVHITWSRQFGKDG-QLDMRAQSSSDKSKLYIMQATPEDADSYSCIAVND 9057
Query: 105 TYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWY 164
+ VTV N P + + + I D +L P + E PE+ W+
Sbjct: 9058 AGGAEAVFQVTV--NTPPKIFGDSFSTTE---IVADTTLEIPC----RTEGIPPPEISWF 9210
Query: 165 KNCKPLL-LDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDE 223
+ KP+L + V++ L + N+ G Y C ++ G+ T ++ I E
Sbjct: 9211 LDGKPILEMPGVTYKQGDLSLRIDNIKPNQEGRYTC-VAENKAGRAEQDT----YVEISE 9375
Query: 224 NKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQF 283
R V+++ +E + G + C V G +V W +G +P+ ++ QF
Sbjct: 9376 PPR---VVMA--SEVMRVVEGRQTTIRCEVFGNPEPVVNWLKDG------EPYTSDLLQF 9522
Query: 284 VEHPSTKRKY 293
STK Y
Sbjct: 9523 ----STKLSY 9540
Score = 40.8 bits (94), Expect = 0.36
Identities = 32/122 (26%), Positives = 47/122 (38%)
Frame = +1
Query: 156 NELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRV 215
N P V W K+ +P D + F L +R G Y C ++ G+ T V
Sbjct: 9457 NPEPVVNWLKDGEPYTSDLLQFSTKLSYLHLRETTLADGGTYTC-IATNKAGESQTTTDV 9633
Query: 216 IQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDP 275
+ P + ++ G+ + C VTG+ V WK NG EIE +P
Sbjct: 9634 EVLV---------PPRIEDEERVLQGKEGNTYMVHCQVTGRPVPYVTWKRNGKEIEQFNP 9786
Query: 276 FL 277
L
Sbjct: 9787 VL 9792
Score = 40.8 bits (94), Expect = 0.36
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 6/194 (3%)
Frame = +1
Query: 84 LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLE-----NDPGLCYSTQATFPQRLHIA 138
L F V+ G Y+C+ ++ L V ++VL D L + +
Sbjct: 4822 LHFDSVSVKQEGNYHCVAQSKGNILDIDVELSVLAVPIVGEDDNL----------EVFLG 4971
Query: 139 GDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYI 198
D SL C + D+ + + ++ +P DNV +L + + E+ G Y+
Sbjct: 4972 KDISLSCDLQTESDDKTTFVWSINGSESDRP---DNVQIPSDGHRLYITDAKPENNGKYM 5142
Query: 199 CRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSM-IQLICNVTGQF 257
CR++ + + + +T+D + PV + P E + G+ I L C VTG
Sbjct: 5143 CRVTNS-------AGKAERTLTLDV--LEPPVFVEPVFEANQKLIGNNPIILQCQVTGNP 5295
Query: 258 SDLVYWKWNGSEIE 271
V WK +G++++
Sbjct: 5296 KPTVIWKIDGNDVD 5337
>ref|NM_008478.2| Mus musculus L1 cell adhesion molecule (L1cam), mRNA
Length = 3783
Score = 49.3 bits (116), Expect = 0.001
Identities = 58/265 (21%), Positives = 101/265 (37%), Gaps = 11/265 (4%)
Frame = +1
Query: 18 LSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRI 77
+ L + ++P + V + V E + P P I++ N I +D R+
Sbjct: 379 IQLVAEGAPKWPKETVKPVEVEEGESVVLPCNPPPSAAPPRIYWMNSKIFDIK--QDERV 552
Query: 78 HQ-QNEHLWFVPAKVEDS-GYYYC---------IVRNSTYCLKTKVTVTVLENDPGLCYS 126
QN L+F D+ Y C I++ L+ K T ++++ P L +
Sbjct: 553 SMGQNGDLYFANVLTSDNHSDYICNAHFPGTRTIIQKEPIDLRVKPTNSMIDRKPRLLFP 732
Query: 127 TQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLV 186
T ++ RL SL+ ++ E P ++W P+ D V + L +
Sbjct: 733 TNSS--SRLVALQGQSLILECIA----EGFPTPTIKWLHPSDPMPTDRVIYQNHNKTLQL 894
Query: 187 RNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSM 246
NV EE G+Y C + R ++T++ P L + PG
Sbjct: 895 LNVGEEDDGEYTCLAENSLGS-----ARHAYYVTVEA----APYWLQKPQSHLYG-PGET 1044
Query: 247 IQLICNVTGQFSDLVYWKWNGSEIE 271
+L C V G+ + W+ NG +E
Sbjct: 1045ARLDCQVQGRPQPEITWRINGMSME 1119
>emb|X12875.1|MMNCAML1 Mouse mRNA for neural cell adhesion molecule L1 (N-CAM L1)
Length = 3783
Score = 49.3 bits (116), Expect = 0.001
Identities = 58/265 (21%), Positives = 101/265 (37%), Gaps = 11/265 (4%)
Frame = +1
Query: 18 LSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRI 77
+ L + ++P + V + V E + P P I++ N I +D R+
Sbjct: 379 IQLVAEGAPKWPKETVKPVEVEEGESVVLPCNPPPSAAPPRIYWMNSKIFDIK--QDERV 552
Query: 78 HQ-QNEHLWFVPAKVEDS-GYYYC---------IVRNSTYCLKTKVTVTVLENDPGLCYS 126
QN L+F D+ Y C I++ L+ K T ++++ P L +
Sbjct: 553 SMGQNGDLYFANVLTSDNHSDYICNAHFPGTRTIIQKEPIDLRVKPTNSMIDRKPRLLFP 732
Query: 127 TQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLV 186
T ++ RL SL+ ++ E P ++W P+ D V + L +
Sbjct: 733 TNSS--SRLVALQGQSLILECIA----EGFPTPTIKWLHPSDPMPTDRVIYQNHNKTLQL 894
Query: 187 RNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSM 246
NV EE G+Y C + R ++T++ P L + PG
Sbjct: 895 LNVGEEDDGEYTCLAENSLGS-----ARHAYYVTVEA----APYWLQKPQSHLYG-PGET 1044
Query: 247 IQLICNVTGQFSDLVYWKWNGSEIE 271
+L C V G+ + W+ NG +E
Sbjct: 1045ARLDCQVQGRPQPEITWRINGMSME 1119
>ref|NM_017345.1| Rattus norvegicus neural cell adhesion molecule L1 (NCAML1), mRNA
Length = 5093
Score = 48.9 bits (115), Expect = 0.001
Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 11/265 (4%)
Frame = +2
Query: 18 LSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRI 77
+ L + ++P + V + V E + P P I++ N I +D R+
Sbjct: 479 IQLVAEGAPKWPKETVKPVEVEEGESVVLPCNPPPSAAPLRIYWMNSKILHIK--QDERV 652
Query: 78 HQ-QNEHLWFVPAKVEDS-GYYYC---------IVRNSTYCLKTKVTVTVLENDPGLCYS 126
QN L+F D+ Y C I++ L+ K T ++++ P L +
Sbjct: 653 SMGQNGDLYFANVLTSDNHSDYICNAHFPGTRTIIQKEPIDLRVKPTNSMIDRKPRLLFP 832
Query: 127 TQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLV 186
T ++ L SL+ ++ E P ++W P+ D V + L +
Sbjct: 833 TNSS--SHLVALQGQSLILECIA----EGFPTPTIKWLHPSDPMPTDRVIYQNHNKTLQL 994
Query: 187 RNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSM 246
NV EE G+Y C + R ++T++ P L + PG
Sbjct: 995 LNVGEEDDGEYTCLAENSLGS-----ARHAYYVTVEA----APYWLQKPQSHLYG-PGET 1144
Query: 247 IQLICNVTGQFSDLVYWKWNGSEIE 271
+L C V G+ V W+ NG IE
Sbjct: 1145ARLDCQVQGRPQPEVTWRINGMSIE 1219
>emb|X59149.1|RNNCAML1 Rat mRNA for neural cell adhesion molecule L1
Length = 5093
Score = 48.9 bits (115), Expect = 0.001
Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 11/265 (4%)
Frame = +2
Query: 18 LSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRI 77
+ L + ++P + V + V E + P P I++ N I +D R+
Sbjct: 479 IQLVAEGAPKWPKETVKPVEVEEGESVVLPCNPPPSAAPLRIYWMNSKILHIK--QDERV 652
Query: 78 HQ-QNEHLWFVPAKVEDS-GYYYC---------IVRNSTYCLKTKVTVTVLENDPGLCYS 126
QN L+F D+ Y C I++ L+ K T ++++ P L +
Sbjct: 653 SMGQNGDLYFANVLTSDNHSDYICNAHFPGTRTIIQKEPIDLRVKPTNSMIDRKPRLLFP 832
Query: 127 TQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLV 186
T ++ L SL+ ++ E P ++W P+ D V + L +
Sbjct: 833 TNSS--SHLVALQGQSLILECIA----EGFPTPTIKWLHPSDPMPTDRVIYQNHNKTLQL 994
Query: 187 RNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSM 246
NV EE G+Y C + R ++T++ P L + PG
Sbjct: 995 LNVGEEDDGEYTCLAENSLGS-----ARHAYYVTVEA----APYWLQKPQSHLYG-PGET 1144
Query: 247 IQLICNVTGQFSDLVYWKWNGSEIE 271
+L C V G+ V W+ NG IE
Sbjct: 1145ARLDCQVQGRPQPEVTWRINGMSIE 1219
>ref|NM_002941.1| Homo sapiens roundabout, axon guidance receptor, homolog 1
(Drosophila) (ROBO1), mRNA
Length = 4956
Score = 48.9 bits (115), Expect = 0.001
Identities = 84/370 (22%), Positives = 151/370 (40%), Gaps = 16/370 (4%)
Frame = +1
Query: 19 SLEIDVCTE--YPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSR 76
SLE+ + + N + ++V E + +C P + H + I +K D +P+ D+D R
Sbjct: 484 SLEVAILRDDFRQNPSDVMVAVGEPAVMECQ--PPRGHPEPTISWKKDG-SPLD-DKDER 651
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT-VTVLENDPGLCYSTQATFPQRL 135
I + L + D+G Y C+ N +++V +TVLE + P L
Sbjct: 652 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER------PSFVKRPSNL 813
Query: 136 HIAGDGSLVCPYVSYFKDE--NNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAE 191
+ D S + FK E + +P V+W K+ L S + ++D L +R V
Sbjct: 814 AVTVDDS------AEFKCEARGDPVPTVRWRKDDGEL---PKSRYEIRDDHTLKIRKVTA 966
Query: 192 EHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLIC 251
G Y C ++ GK +T+ E ++ PR++ + G + C
Sbjct: 967 GDMGSYTC-VAENMVGK----AEASATLTVQEPPH---FVVKPRDQVVAL--GRTVTFQC 1116
Query: 252 NVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITT--LNISEVKSQFY 309
TG ++W+ GS+ L YQ P + ++++ T L I+ V+
Sbjct: 1117EATGNPQPAIFWRREGSQ------NLLFSYQ---PPQSSSRFSVSQTGDLTITNVQRSDV 1269
Query: 310 RYPFICVVKNT--NIFESAHVQLI-----YPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y +IC N +I A++++ P P + + + + T V C+
Sbjct: 1270GY-YICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTFVLS-CVATGS 1443
Query: 363 KVDIVLWYRD 372
V +LW +D
Sbjct: 1444PVPTILWRKD 1473
>gb|AF040990.1|AF040990 Homo sapiens roundabout 1 (robo1) mRNA, complete cds
Length = 4956
Score = 48.9 bits (115), Expect = 0.001
Identities = 84/370 (22%), Positives = 151/370 (40%), Gaps = 16/370 (4%)
Frame = +1
Query: 19 SLEIDVCTE--YPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSR 76
SLE+ + + N + ++V E + +C P + H + I +K D +P+ D+D R
Sbjct: 484 SLEVAILRDDFRQNPSDVMVAVGEPAVMECQ--PPRGHPEPTISWKKDG-SPLD-DKDER 651
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT-VTVLENDPGLCYSTQATFPQRL 135
I + L + D+G Y C+ N +++V +TVLE + P L
Sbjct: 652 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER------PSFVKRPSNL 813
Query: 136 HIAGDGSLVCPYVSYFKDE--NNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAE 191
+ D S + FK E + +P V+W K+ L S + ++D L +R V
Sbjct: 814 AVTVDDS------AEFKCEARGDPVPTVRWRKDDGEL---PKSRYEIRDDHTLKIRKVTA 966
Query: 192 EHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLIC 251
G Y C ++ GK +T+ E ++ PR++ + G + C
Sbjct: 967 GDMGSYTC-VAENMVGK----AEASATLTVQEPPH---FVVKPRDQVVAL--GRTVTFQC 1116
Query: 252 NVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITT--LNISEVKSQFY 309
TG ++W+ GS+ L YQ P + ++++ T L I+ V+
Sbjct: 1117EATGNPQPAIFWRREGSQ------NLLFSYQ---PPQSSSRFSVSQTGDLTITNVQRSDV 1269
Query: 310 RYPFICVVKNT--NIFESAHVQLI-----YPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y +IC N +I A++++ P P + + + + T V C+
Sbjct: 1270GY-YICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTFVLS-CVATGS 1443
Query: 363 KVDIVLWYRD 372
V +LW +D
Sbjct: 1444PVPTILWRKD 1473
>ref|XM_053531.3| Homo sapiens fibulin 6 (FIBL-6), mRNA
Length = 18206
Score = 48.5 bits (114), Expect = 0.002
Identities = 51/218 (23%), Positives = 82/218 (37%), Gaps = 3/218 (1%)
Frame = +2
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEN 119
W KN+ PI + ++ I L + AKV D G Y CI N K K ++TV
Sbjct: 9221 WLKNEQ--PIKLNTNTLIVPGGRTLQIIRAKVSDGGEYTCIAINQAGESKKKFSLTVYVP 9394
Query: 120 DPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPE--VQWYKNCKPLL-LDNVS 176
+ +++ + SL C E+N +P + WYKN + + +V
Sbjct: 9395 PSIKDHDSESLSVVNVREGTSVSLEC--------ESNAVPPPVITWYKNGRMITESTHVE 9550
Query: 177 FFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRN 236
L ++ G Y+CR + G+ + ++ P I P
Sbjct: 9551 ILADGQMLHIKKAEVSDTGQYVCR-AINVAGRDDKNFHLNVYVP--------PSIEGPER 9703
Query: 237 ETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWND 274
E I + + L C+ TG + W N IE +D
Sbjct: 9704 EVIVETISNPVTLTCDATGIPPPTIAWLKNHKRIENSD 9817
Score = 47.0 bits (110), Expect = 0.005
Identities = 54/231 (23%), Positives = 83/231 (35%), Gaps = 14/231 (6%)
Frame = +2
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
+I W+K+ P+S RI L + +ED+G Y C+VRN+
Sbjct: 7478 SITWFKDG--WPVSLSNSVRILSGGRMLRLMQTTMEDAGQYTCVVRNAA----------- 7618
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKD-------ENNELPEVQWYKNCKP 169
+ + P HI G+ +L V + N +PE+ W+K+ +P
Sbjct: 7619 --GEERKIFGLSVLVPP--HIVGENTLEDVKVKEKQSVTLTCEVTGNPVPEITWHKDGQP 7786
Query: 170 LLLDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYP------VTRVIQFITID 222
L D + L + NV H G Y C S K V+ I + D
Sbjct: 7787 LQEDEAHHIISGGRFLQITNVQVPHTGRYTCLASSPAGHKSRSFSLNVFVSPTIAGVGSD 7966
Query: 223 ENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWN 273
N D VIL+ S L+C + W +G+ +E N
Sbjct: 7967 GNPEDVTVILN-----------SPTSLVCEAYSYPPATITWFKDGTPLESN 8086
Score = 45.4 bits (106), Expect = 0.015
Identities = 56/227 (24%), Positives = 92/227 (39%), Gaps = 8/227 (3%)
Frame = +3
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
I WYK+ PI + + + ++L A+V DS Y C V N + V V
Sbjct: 4965 ITWYKDGQ--PIMSSSQALYIDKGQYLHIPRAQVSDSATYTCHVANVAGTAEKSFHVDVY 5138
Query: 118 ENDPGLCYSTQAT-FPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL-DNV 175
P + AT +++ IA +L C K N P + W K+ P+ DN+
Sbjct: 5139 V--PPMIEGNLATPLNKQVVIAHSLTLEC------KAAGNPSPILTWLKDGVPVKANDNI 5294
Query: 176 SFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPR 235
KL + + E RG YIC ++ + G++ E K + V++ P
Sbjct: 5295 RIEAGGKKLEIMSAQEIDRGQYIC-VATSVAGEK-------------EIKYEVDVLVPPA 5432
Query: 236 NETIEADP------GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPF 276
E + ++++L C+VTG + W +G I+ D F
Sbjct: 5433 IEGGDETSYFIVMVNNLLELDCHVTGSPPPTIMWLKDGQLIDERDGF 5573
Score = 39.3 bits (90), Expect = 1.1
Identities = 59/256 (23%), Positives = 95/256 (37%), Gaps = 9/256 (3%)
Frame = +3
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEH--LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVT 115
I+WYK++ + S I N L A ED+G Y C N + +
Sbjct: 4404 IMWYKDN----VQVTESSTIQTVNNGKILKLFRATPEDAGRYSCKAINIAGTSQKYFNID 4571
Query: 116 VLENDPGLCYSTQATFPQRLHIA--GDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL- 172
VL P T FP + + D +L C + P++ W+K+ KPL L
Sbjct: 4572 VLV--PPTIIGTN--FPNEVSVVLNRDVALECQV------KGTPFPDIHWFKDGKPLFLG 4721
Query: 173 -DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI 231
NV L ++N +G Y C +S GKQ ++ + P
Sbjct: 4722 DPNVELLDRGQVLHLKNARRNDKGRYQCTVS-NAAGKQAKDIKLTIY---------NPPS 4871
Query: 232 LSPRNETIEADP--GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDY-QFVEHPS 288
+ N T + S+I+L C G + W +G I + L D Q++ P
Sbjct: 4872 IKGGNVTTDISVLINSLIKLECETRGLPMPAITWYKDGQPIMSSSQALYIDKGQYLHIPR 5051
Query: 289 TKRKYTLITTLNISEV 304
+ + T +++ V
Sbjct: 5052 AQVSDSATYTCHVANV 5099
Score = 37.7 bits (86), Expect = 3.1
Identities = 54/220 (24%), Positives = 81/220 (36%), Gaps = 6/220 (2%)
Frame = +3
Query: 57 TIIWYKNDS----KTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKV 112
TI W + D+ P S S++ + L+ + D G Y C N ++++
Sbjct: 2697 TIKWRRLDNMPIFSRPFSVSSISQL--RTGALFILNLWASDKGTYICEAENQFGKIQSET 2870
Query: 113 TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
TVTV GL P ++ L P N +PE +W KN LL
Sbjct: 2871 TVTVT----GLVAPLIGISPSVANVIEGQQLTLPCTLL---AGNPIPERRWIKNSAMLLQ 3029
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFI--TIDENKRDRPV 230
+ L + V + G+Y C ++ G T V+ + TI ++
Sbjct: 3030 NPYITVRSDGSLHIERVQLQDGGEYTC-VASNVAGTNNKTTSVVVHVLPTIQHGQQ---- 3194
Query: 231 ILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
ILS TIE P + L C +G V W G I
Sbjct: 3195 ILS----TIEGIP---VTLPCKASGNPKPSVIWSKKGELI 3293
Score = 37.0 bits (84), Expect = 5.2
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Frame = +2
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNST------YCLKT 110
TI W+K+ TP+ ++R+ RI L + A+ +++G Y C+ N Y +K
Sbjct: 8045 TITWFKDG--TPLESNRNIRILPGGRTLQILNAQEDNAGRYSCVATNEAGEMIKHYEVKV 8218
Query: 111 KVTVTVLEND---PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNC 167
+ + + D PGL P+ + I + +L +Y + WYK+
Sbjct: 8219 YIPPIINKGDLWGPGLS-------PKEVKIKVNNTLTLECEAYAIPS----ASLSWYKDG 8365
Query: 168 KPLLL-DNVSFFGVKDKLLVRNVAEEHRGDYIC 199
+PL D+V+ L ++ G Y C
Sbjct: 8366 QPLKSDDHVNIAANGHTLQIKEAQISDTGRYTC 8464
Score = 36.6 bits (83), Expect = 6.8
Identities = 50/221 (22%), Positives = 76/221 (33%), Gaps = 4/221 (1%)
Frame = +2
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKV--EDSGYYYCIVRNSTYCLKTKVTVT 115
+ W N++ P D N H V +V EDSG Y C NS +K V
Sbjct: 13100 LTWTFNNNIIPAHFD------SVNGHSELVIERVSKEDSGTYVCTAENSVGFVKAIGFVY 13261
Query: 116 VLENDPGLCYSTQATFPQRL--HIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLD 173
V E + +P + G+ L C + + P +QW + + +
Sbjct: 13262 VKEPPV-----FKGDYPSNWIEPLGGNAILNCEV------KGDPTPTIQWNRKGVDIEIS 13408
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
+ L + E GDY C + + ++ +Q I + L
Sbjct: 13409 HRIRQLGNGSLAIYGTVNEDAGDYTCVATNEAGVVERSMSLTLQSPPI--------ITLE 13564
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWND 274
P I A G I L C TG+ + W G I W+D
Sbjct: 13565 PVETVINA--GGKIILNCQATGEPQPTITWSRQGHSISWDD 13681
>dbj|AB018299.1|AB018299 Homo sapiens mRNA for KIAA0756 protein, partial cds
Length = 4226
Score = 48.5 bits (114), Expect = 0.002
Identities = 45/180 (25%), Positives = 66/180 (36%)
Frame = +3
Query: 96 YYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDEN 155
+ + I + + + LK T V E P Y Q T ++ + G L+ S
Sbjct: 81 FTHTIQQKNPFTLKVLTTRGVAERTPSFMYP-QGTASSQMVLRGMDLLLECIAS-----G 242
Query: 156 NELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRV 215
P++ WYK L D F L + NV+EE G+Y C S ++
Sbjct: 243 VPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH----- 407
Query: 216 IQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDP 275
TI + P L I A PG +L+C G V W NG ++ P
Sbjct: 408 ----TISVRVKAAPYWLDEPKNLILA-PGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPP 572
Score = 47.8 bits (112), Expect = 0.003
Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 4/214 (1%)
Frame = +3
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
I WYK P +D+ ++ N+ L EDSG Y+C+ N ++ ++V V
Sbjct: 258 IAWYKKGGDLP--SDK-AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 428
Query: 118 ENDPGLCYSTQATFPQRLHIA--GDGSLVCPYVSYFKDENNELPEVQWYKNCKPL--LLD 173
L P+ L +A DG LVC + N P VQW N +PL
Sbjct: 429 AAPYWL------DEPKNLILAPGEDGRLVC------RANGNPKPTVQWMVNGEPLQSAPP 572
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
N + D ++ R+ R Y C S ++ F+++ + P +LS
Sbjct: 573 NPNREVAGDTIIFRDTQISSRAVYQCNTS-----NEHGYLLANAFVSVLDVP---PRMLS 728
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNG 267
PRN+ I + +L C G + W NG
Sbjct: 729 PRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNG 830
>emb|X60184.1|MMST2G Mouse ST2 gene for growth-associated protein
Length = 9169
Score = 48.5 bits (114), Expect = 0.002
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYY 98
NE I +CP + + WY +D+ I + +RI + L F+PA+VEDSG Y
Sbjct: 2436 NEALIVRCPQRGRSTY--PVEWYYSDTNESIPTQKRNRIFVSRDRLKFLPARVEDSGIYA 2609
Query: 99 CIVRNSTYC 107
C++R YC
Sbjct: 2610 CVIRR--YC 2630
>ref|NM_014813.1| Homo sapiens KIAA0806 gene product (KIAA0806), mRNA
Length = 4015
Score = 48.1 bits (113), Expect = 0.002
Identities = 40/150 (26%), Positives = 65/150 (42%), Gaps = 3/150 (2%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIH--QQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVT 115
I W K D T A R+ R+H +++ + K+ED G Y C+ +N+ L ++T
Sbjct: 2095 ISWQK-DGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNTAGGLSANASLT 2271
Query: 116 VLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNV 175
VLE S + G+ +++ + P + W K+ PLL+
Sbjct: 2272 VLETP-----SFIRPLEDKTVTRGETAVLQCIAG-----GSPAPRLNWTKDDGPLLVTER 2421
Query: 176 SFFGVKDKLL-VRNVAEEHRGDYICRMSYT 204
FF ++LL + + E G Y C MS T
Sbjct: 2422 HFFAAANQLLIIVDAGLEDAGKYTCIMSNT 2511
>dbj|AB018349.1|AB018349 Homo sapiens mRNA for KIAA0806 protein, complete cds
Length = 4015
Score = 48.1 bits (113), Expect = 0.002
Identities = 40/150 (26%), Positives = 65/150 (42%), Gaps = 3/150 (2%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIH--QQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVT 115
I W K D T A R+ R+H +++ + K+ED G Y C+ +N+ L ++T
Sbjct: 2095 ISWQK-DGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNTAGGLSANASLT 2271
Query: 116 VLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNV 175
VLE S + G+ +++ + P + W K+ PLL+
Sbjct: 2272 VLETP-----SFIRPLEDKTVTRGETAVLQCIAG-----GSPAPRLNWTKDDGPLLVTER 2421
Query: 176 SFFGVKDKLL-VRNVAEEHRGDYICRMSYT 204
FF ++LL + + E G Y C MS T
Sbjct: 2422 HFFAAANQLLIIVDAGLEDAGKYTCIMSNT 2511
>gb|AC008182.2|AC008182 Drosophila melanogaster, chromosome 2L, region 29F6-30A4, BAC clone
BACR48E15, complete sequence
Length = 192350
Score = 47.8 bits (112), Expect = 0.003
Identities = 46/232 (19%), Positives = 97/232 (40%), Gaps = 4/232 (1%)
Frame = -2
Query: 315 CVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWY--RD 372
C+ ++ E + V + L +I+ +I +C F+ I++W+ +
Sbjct: 81703 CIDTGRSLIEVEETDICPSVLIYYTSLAVSLLIIALSINVFIC----FRQPIMIWFYEHE 81536
Query: 373 SCSGFLPSKASD-GKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE-GQFGYKLFIYG 430
C + D K YDA++ SF+ D + + + LE G+ ++L Y
Sbjct: 81535 ICLSLAARRELDEDKKYDAFL---------SFTHKDEDLIEEFVDRLENGRHKFRLCFYL 81383
Query: 431 RDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL 490
RD VGE + N++VK SRR+II++ ++ +W E ++A++ ++++
Sbjct: 81382 RDWLVGESIPDCINQSVKGSRRIIILMTKNFLKSTW--GRLEFRLALHATSRDRCKRLIV 81209
Query: 491 LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ ++ ++ + ++ + + FW L Y MP
Sbjct: 81208 VLYPDVEHFDDLDSELRAYMVLNTYL----------DRNNPNFWNKLMYSMP 81083
>gb|AE003623.1|AE003623 Drosophila melanogaster genomic scaffold 142000013386055 section 16 of
63, complete sequence
Length = 267547
Score = 47.8 bits (112), Expect = 0.003
Identities = 46/232 (19%), Positives = 97/232 (40%), Gaps = 4/232 (1%)
Frame = +2
Query: 315 CVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWY--RD 372
C+ ++ E + V + L +I+ +I +C F+ I++W+ +
Sbjct: 156143 CIDTGRSLIEVEETDICPSVLIYYTSLAVSLLIIALSINVFIC----FRQPIMIWFYEHE 156310
Query: 373 SCSGFLPSKASD-GKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE-GQFGYKLFIYG 430
C + D K YDA++ SF+ D + + + LE G+ ++L Y
Sbjct: 156311 ICLSLAARRELDEDKKYDAFL---------SFTHKDEDLIEEFVDRLENGRHKFRLCFYL 156463
Query: 431 RDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL 490
RD VGE + N++VK SRR+II++ ++ +W E ++A++ ++++
Sbjct: 156464 RDWLVGESIPDCINQSVKGSRRIIILMTKNFLKSTW--GRLEFRLALHATSRDRCKRLIV 156637
Query: 491 LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ ++ ++ + ++ + + FW L Y MP
Sbjct: 156638 VLYPDVEHFDDLDSELRAYMVLNTYL----------DRNNPNFWNKLMYSMP 156763
>gb|L25393.1|SCATOLLD Schistocerca americana Toll protein, partial cds
Length = 474
Score = 47.8 bits (112), Expect = 0.003
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 5/162 (3%)
Frame = +1
Query: 386 KTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRD----DYVGEDTIE 441
K YD Y+ Y S D D + ++ E+ G ++L ++ RD Y T
Sbjct: 43 KLYDGYVCY-------SPKDEDFVLHSIVAELEHGDPSFQLCLHYRDLPHQAYFQHSTSP 201
Query: 442 VTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLE-LEKIQDYE 500
V E + SRR+I++L R+ W E + A++ AL K+V++E + + E
Sbjct: 202 VVLEAAEASRRVILVLSRNFMQTEW--SRFEFRSALHEALKGRVFKLVVVEESSNLPEAE 375
Query: 501 KMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ PD ++K W + RFW LRY MP
Sbjct: 376 EDPDLRPYLKTAPRA--WG----------EKRFWARLRYAMP 465
>emb|Y17793.1|MMU17793 Mus musculus mRNA for Dutt1 protein
Length = 6922
Score = 47.8 bits (112), Expect = 0.003
Identities = 82/370 (22%), Positives = 151/370 (40%), Gaps = 16/370 (4%)
Frame = +2
Query: 19 SLEIDVCTE--YPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSR 76
SLE+ + + N + ++V E + +C P + H + I +K D +P+ D+D R
Sbjct: 620 SLEVAILRDDFRQNPSDVMVAVGEPAVMECQ--PPRGHPEPTISWKKDG-SPLD-DKDER 787
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT-VTVLENDPGLCYSTQATFPQRL 135
I + L + D+G Y C+ N +++V +TVLE + P L
Sbjct: 788 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER------PSFVKRPSNL 949
Query: 136 HIAGDGSLVCPYVSYFKDE--NNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAE 191
+ D S + FK E + +P V+W K+ L S + ++D L +R V
Sbjct: 950 AVTVDDS------AEFKCEARGDPVPTVRWRKDDGEL---PKSRYEIRDDHTLKIRKVTA 1102
Query: 192 EHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLIC 251
G Y C ++ GK +T+ E ++ PR++ + G + C
Sbjct: 1103GDMGSYTC-VAENMVGK----AEASATLTVQEPPH---FVVKPRDQVVAL--GRTVTFQC 1252
Query: 252 NVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITT--LNISEVKSQFY 309
TG ++W+ GS+ L YQ P + ++++ T L I+ V+
Sbjct: 1253EATGNPQPAIFWRREGSQ------NLLFSYQ---PPQSSSRFSVSQTGDLTITNVQRSDV 1405
Query: 310 RYPFICVVKNT--NIFESAHVQLI-----YPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y +IC N +I A++++ P P + + + + T++ C+
Sbjct: 1406GY-YICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLILS-CVATGS 1579
Query: 363 KVDIVLWYRD 372
+LW +D
Sbjct: 1580PAPTILWRKD 1609
>ref|XM_078936.1| Toll-4, mRNA
Length = 2432
Score = 47.8 bits (112), Expect = 0.003
Identities = 46/232 (19%), Positives = 97/232 (40%), Gaps = 4/232 (1%)
Frame = +3
Query: 315 CVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWY--RD 372
C+ ++ E + V + L +I+ +I +C F+ I++W+ +
Sbjct: 1761 CIDTGRSLIEVEETDICPSVLIYYTSLAVSLLIIALSINVFIC----FRQPIMIWFYEHE 1928
Query: 373 SCSGFLPSKASD-GKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE-GQFGYKLFIYG 430
C + D K YDA++ SF+ D + + + LE G+ ++L Y
Sbjct: 1929 ICLSLAARRELDEDKKYDAFL---------SFTHKDEDLIEEFVDRLENGRHKFRLCFYL 2081
Query: 431 RDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL 490
RD VGE + N++VK SRR+II++ ++ +W E ++A++ ++++
Sbjct: 2082 RDWLVGESIPDCINQSVKGSRRIIILMTKNFLKSTW--GRLEFRLALHATSRDRCKRLIV 2255
Query: 491 LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ ++ ++ + ++ + + FW L Y MP
Sbjct: 2256 VLYPDVEHFDDLDSELRAYMVLNTYL----------DRNNPNFWNKLMYSMP 2381
>ref|NM_078925.1| Drosophila melanogaster Down syndrome cell adhesion molecule (Dscam),
mRNA
Length = 6592
Score = 47.8 bits (112), Expect = 0.003
Identities = 70/311 (22%), Positives = 122/311 (38%), Gaps = 11/311 (3%)
Frame = +1
Query: 74 DSRIHQQNEHLWFVPAKVEDSGYYYCIVRNST--YCLKTKVTVTV---LENDPGLCYSTQ 128
+ R+ Q + L A VEDSG Y C+V NS ++T +TVT + DP
Sbjct: 1408 NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP------ 1569
Query: 129 ATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLL-VR 187
Q + C Y N + V W K+ K + G + +L +
Sbjct: 1570 ---TQTVDFGRPAVFTCQYT------GNPIKTVSWMKDGKAI--------GHSEPVLRIE 1698
Query: 188 NVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP-RNETIEADPGSM 246
+V +E +G Y C + + + + D PVI + ET+E PG
Sbjct: 1699 SVKKEDKGMYQCFVRNDQESAEASAELKL------GGRFDPPVIRQAFQEETME--PGPS 1854
Query: 247 IQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKS 306
+ L C G + + W+ +G +I ND + Y V +++ LNI+ V +
Sbjct: 1855 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG-------DVVSYLNITSVHA 2013
Query: 307 Q---FYRYPFICVVKN-TNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y+ C+ K+ + E + +Y +P + + I+ + C +
Sbjct: 2014 NDGGLYK----CIAKSKVGVAEHSAKLNVYGLPYIRQ--MEKKAIVAGETLIVTCPVAGY 2175
Query: 363 KVDIVLWYRDS 373
+D ++W RD+
Sbjct: 2176 PIDSIVWERDN 2208
>gb|AC009197.8| Drosophila melanogaster, chromosome 2L, region 30A-30E, BAC clone
BACR14M08, complete sequence
Length = 170057
Score = 47.8 bits (112), Expect = 0.003
Identities = 46/232 (19%), Positives = 97/232 (40%), Gaps = 4/232 (1%)
Frame = +2
Query: 315 CVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWY--RD 372
C+ ++ E + V + L +I+ +I +C F+ I++W+ +
Sbjct: 28409 CIDTGRSLIEVEETDICPSVLIYYTSLAVSLLIIALSINVFIC----FRQPIMIWFYEHE 28576
Query: 373 SCSGFLPSKASD-GKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE-GQFGYKLFIYG 430
C + D K YDA++ SF+ D + + + LE G+ ++L Y
Sbjct: 28577 ICLSLAARRELDEDKKYDAFL---------SFTHKDEDLIEEFVDRLENGRHKFRLCFYL 28729
Query: 431 RDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL 490
RD VGE + N++VK SRR+II++ ++ +W E ++A++ ++++
Sbjct: 28730 RDWLVGESIPDCINQSVKGSRRIIILMTKNFLKSTW--GRLEFRLALHATSRDRCKRLIV 28903
Query: 491 LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ ++ ++ + ++ + + FW L Y MP
Sbjct: 28904 VLYPDVEHFDDLDSELRAYMVLNTYL----------DRNNPNFWNKLMYSMP 29029
>emb|X65224.1|GGNEUFASC G.gallus mRNA for neurofascin
Length = 4041
Score = 47.4 bits (111), Expect = 0.004
Identities = 65/281 (23%), Positives = 104/281 (36%), Gaps = 23/281 (8%)
Frame = +1
Query: 18 LSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRI 77
+ L++ +P + V + V+E P +I++ + S PI D+ R+
Sbjct: 505 IHLQVSRSPLWPKEKVDVIEVDEGAPLSLQCNPPPGLPPPVIFWMSSSMEPIHQDK--RV 678
Query: 78 HQ-QNEHLWFVPAKVEDSG----------YYYCIVRNSTYCLKTKV----TVTVLENDPG 122
Q QN L+F ++D+ + + I + + Y LK K T L N
Sbjct: 679 SQGQNGDLYFSNVMLQDAQTDYSCNARFHFTHTIQQKNPYTLKVKTKKPHNETSLRNHTD 858
Query: 123 LCYSTQA---TFPQRLHIAGDGS--LVCPYVSYFKD---ENNELPEVQWYKNCKPLLLDN 174
+ YS + T P ++ G S +V V + P++ WYK L
Sbjct: 859 M-YSARGVTETTPSFMYPYGTSSSQMVLRGVDLLLECIASGVPAPDIMWYKKGGELPAGK 1035
Query: 175 VSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP 234
L + NV+EE G+Y C S ++ TI + P L
Sbjct: 1036TKLENFNKALRISNVSEEDSGEYFCLASNKMGSIRH---------TISVRVKAAPYWLDE 1188
Query: 235 RNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDP 275
I A PG +L+C G + W NG IE + P
Sbjct: 1189PQNLILA-PGEDGRLVCRANGNPKPSIQWLVNGEPIEGSPP 1308
Score = 39.7 bits (91), Expect = 0.81
Identities = 43/170 (25%), Positives = 70/170 (40%)
Frame = +1
Query: 30 NQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPA 89
NQ++ + N + CP + + T+ W+KN + D + +N L A
Sbjct: 1471 NQLIKVIQYNRTRL-DCPFFGSPI--PTLRWFKNGQGNML--DGGNYKAHENGSLEMSMA 1635
Query: 90 KVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVS 149
+ ED G Y C+ N ++ +V + V DP T+ + GS+ +
Sbjct: 1636 RKEDQGIYTCVATNILGKVEAQVRLEV--KDP-----TRIVRGPEDQVVKRGSMPRLHCR 1794
Query: 150 YFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYIC 199
D +L V W K+ PL + N D L + VAE+ +GDY C
Sbjct: 1795 VKHDPTLKLT-VTWLKDDAPLYIGN-RMKKEDDGLTIYGVAEKDQGDYTC 1938
>ref|NM_022188.1| Rattus norvegicus roundabout homolog 1 (Drosophila) (Robo1), mRNA
Length = 4956
Score = 47.4 bits (111), Expect = 0.004
Identities = 83/370 (22%), Positives = 149/370 (39%), Gaps = 16/370 (4%)
Frame = +1
Query: 19 SLEIDVCTE--YPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSR 76
SLE+ + + N + ++V E + +C P + H + I +K D +P+ D+D R
Sbjct: 484 SLEVAILRDDFRQNPSDVMVAVGEPAVMECQ--PPRGHPEPTISWKKDG-SPLD-DKDER 651
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT-VTVLENDPGLCYSTQATFPQRL 135
I + L + D+G Y C+ N ++KV VTVLE + P L
Sbjct: 652 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESKVADVTVLER------PSFVKRPSNL 813
Query: 136 HIAGDGSLVCPYVSYFKDE--NNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAE 191
+ D S + FK E + +P W K+ L S + ++D L +R V
Sbjct: 814 AVTVDDS------AEFKCEARGDPVPTFGWRKDDGEL---PKSRYEIRDDHTLKIRKVTA 966
Query: 192 EHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLIC 251
G Y C ++ GK +T+ E ++ PR++ + G + C
Sbjct: 967 GDMGSYTC-VAENMVGK----AEASATLTVQEPPH---FVVKPRDQVVAL--GRTVTFQC 1116
Query: 252 NVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITT--LNISEVKSQFY 309
TG ++W+ GS+ L YQ P + ++++ T L ++ V+
Sbjct: 1117EATGNPQPAIFWRREGSQ------NLLFSYQ---PPQSSSRFSVSQTGDLTVTNVQRSDV 1269
Query: 310 RYPFICVVKNT--NIFESAHVQLI-----YPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y +IC N +I A++++ P P + + + + T+ C+
Sbjct: 1270GY-YICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLTLS-CVATGS 1443
Query: 363 KVDIVLWYRD 372
V +LW +D
Sbjct: 1444PVPTILWRKD 1473
>gb|AF041082.1|AF041082 Rattus norvegicus transmembrane receptor Robo1 mRNA, complete cds
Length = 4956
Score = 47.4 bits (111), Expect = 0.004
Identities = 83/370 (22%), Positives = 149/370 (39%), Gaps = 16/370 (4%)
Frame = +1
Query: 19 SLEIDVCTE--YPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSR 76
SLE+ + + N + ++V E + +C P + H + I +K D +P+ D+D R
Sbjct: 484 SLEVAILRDDFRQNPSDVMVAVGEPAVMECQ--PPRGHPEPTISWKKDG-SPLD-DKDER 651
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT-VTVLENDPGLCYSTQATFPQRL 135
I + L + D+G Y C+ N ++KV VTVLE + P L
Sbjct: 652 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESKVADVTVLER------PSFVKRPSNL 813
Query: 136 HIAGDGSLVCPYVSYFKDE--NNELPEVQWYKNCKPLLLDNVSFFGVKD--KLLVRNVAE 191
+ D S + FK E + +P W K+ L S + ++D L +R V
Sbjct: 814 AVTVDDS------AEFKCEARGDPVPTFGWRKDDGEL---PKSRYEIRDDHTLKIRKVTA 966
Query: 192 EHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLIC 251
G Y C ++ GK +T+ E ++ PR++ + G + C
Sbjct: 967 GDMGSYTC-VAENMVGK----AEASATLTVQEPPH---FVVKPRDQVVAL--GRTVTFQC 1116
Query: 252 NVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITT--LNISEVKSQFY 309
TG ++W+ GS+ L YQ P + ++++ T L ++ V+
Sbjct: 1117EATGNPQPAIFWRREGSQ------NLLFSYQ---PPQSSSRFSVSQTGDLTVTNVQRSDV 1269
Query: 310 RYPFICVVKNT--NIFESAHVQLI-----YPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y +IC N +I A++++ P P + + + + T+ C+
Sbjct: 1270GY-YICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLTLS-CVATGS 1443
Query: 363 KVDIVLWYRD 372
V +LW +D
Sbjct: 1444PVPTILWRKD 1473
>gb|AC007165.3|AC007165 Homo sapiens BAC clone RP11-451C2, complete sequence
Length = 45813
Score = 47.4 bits (111), Expect = 0.004
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Frame = -1
Query: 45 KCPLTPNKMHGDT-----IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYC 99
+CP P + + W+KNDS + + ++R+ Q+ LW +PA EDSG Y C
Sbjct: 38046 RCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVC 37867
Query: 100 IVRNSTYC------LKTKVTVTVLENDPGL 123
R + C L V V +DP L
Sbjct: 37866 TTR*VSLCGAGEGILAGWRLVRVFSHDPDL 37777
Score = 43.9 bits (102), Expect = 0.043
Identities = 22/65 (33%), Positives = 38/65 (57%)
Frame = -3
Query: 101 VRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPE 160
+RN++YC K + + V EN + ++PQ L ++ G LVCP +S F + ++ +
Sbjct: 31819 IRNASYCDKMSIELRVFENTDA--FLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV-K 31649
Query: 161 VQWYK 165
+QWYK
Sbjct: 31648 IQWYK 31634
>gb|AF247768.1|AF247768 Drosophila melanogaster Toll-4 mRNA, partial cds
Length = 2432
Score = 47.0 bits (110), Expect = 0.005
Identities = 46/232 (19%), Positives = 97/232 (40%), Gaps = 4/232 (1%)
Frame = +3
Query: 315 CVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWY--RD 372
C+ ++ E + V + L +I+ +I +C F+ I++W+ +
Sbjct: 1761 CIDTGRSLIEVEETDICPSVLIYYTSLAVSLLIIALSINVFIC----FRQPIMIWFYEHE 1928
Query: 373 SCSGFLPSKASD-GKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE-GQFGYKLFIYG 430
C + D K YDA++ SF+ D + + + LE G+ ++L Y
Sbjct: 1929 ICLSLAARRELDEDKKYDAFL---------SFTHKDEDLIEEFVDRLENGRDKFRLCFYL 2081
Query: 431 RDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL 490
RD VGE + N++VK SRR+II++ ++ +W E ++A++ ++++
Sbjct: 2082 RDWLVGESIPDCINQSVKGSRRIIILMTKNFLKSTW--GRLEFRLALHATSRDRCKRLIV 2255
Query: 491 LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ ++ ++ + ++ + + FW L Y MP
Sbjct: 2256 VLYPDVEHFDDLDSELRAYMVLNTYL----------DRNNPNFWNKLMYSMP 2381
>gb|AF156100.1|AF156100 Homo sapiens hemicentin mRNA, complete cds
Length = 18207
Score = 47.0 bits (110), Expect = 0.005
Identities = 51/218 (23%), Positives = 81/218 (36%), Gaps = 3/218 (1%)
Frame = +2
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEN 119
W KN PI + ++ I L + AKV D G Y CI N K K ++TV
Sbjct: 9224 WLKNXQ--PIKLNTNTLIVPGGRTLQIIRAKVSDGGEYTCIAINXAGESKKKFSLTVYVP 9397
Query: 120 DPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPE--VQWYKNCKPLL-LDNVS 176
+ +++ + SL C E+N +P + WYKN + + +V
Sbjct: 9398 PSIKDHDSESLSVVNVREGTSVSLEC--------ESNAVPPPVITWYKNGRMITESTHVE 9553
Query: 177 FFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRN 236
L ++ G Y+CR + G+ + ++ P I P
Sbjct: 9554 ILADGQMLHIKKAEVSDTGQYVCR-AINVAGRDDKNFHLNVYVP--------PSIEGPER 9706
Query: 237 ETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWND 274
E I + + L C+ TG + W N IE +D
Sbjct: 9707 EVIVETISNPVTLTCDATGIPPPTIAWLKNYKRIENSD 9820
Score = 45.4 bits (106), Expect = 0.015
Identities = 53/228 (23%), Positives = 81/228 (35%), Gaps = 14/228 (6%)
Frame = +2
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEN 119
W+K+ P+S RI L + +ED+G Y C+VRN+
Sbjct: 7490 WFKDG--WPVSLSNSVRILSGGRMLRLMQTTMEDAGQYTCVVRNAA-------------G 7624
Query: 120 DPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKD-------ENNELPEVQWYKNCKPLLL 172
+ + P HI G+ +L V + N +PE+ W+K+ +PL
Sbjct: 7625 EERKIFGLSVLVPP--HIVGENTLEDVKVKEKQSVTLTCEVTGNPVPEITWHKDGQPLQE 7798
Query: 173 DNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYP------VTRVIQFITIDENK 225
D + L + NV H G Y C S K V+ I + D N
Sbjct: 7799 DEAHHIISGGRFLQITNVQVPHTGRYTCLASSPAGHKSRSFSLNVFVSPTIAGVGSDGNP 7978
Query: 226 RDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWN 273
D VIL+ S L+C + W +G+ +E N
Sbjct: 7979 EDVTVILN-----------SPTSLVCEAYSYPPATITWFKDGTPLESN 8089
Score = 42.0 bits (97), Expect = 0.16
Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 8/227 (3%)
Frame = +2
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
I WYK+ PI + + + ++L A+V DS Y C V N + V V
Sbjct: 4964 ITWYKDGQ--PIMSSSQALYIDKGQYLHIPRAQVSDSATYTCHVANVAGTAEKSFHVDVY 5137
Query: 118 ENDPGLCYSTQAT-FPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL-DNV 175
P + AT +++ IA +L C N P + W K+ P+ DN
Sbjct: 5138 V--PPMIEGNLATPLNKQVVIAHSLTLEC------NAAGNPSPILTWLKDGVPVKANDNF 5293
Query: 176 SFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPR 235
KL + + E RG YIC ++ + G++ E K + V++ P
Sbjct: 5294 RIEAGGKKLEIMSAQEIDRGQYIC-VATSVAGEK-------------EIKYEVDVLVPPA 5431
Query: 236 NETIEADP------GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPF 276
E + ++++L C+VTG + W +G I+ D F
Sbjct: 5432 IEGGDETSYFIVMVNNLLELDCHVTGSPPPTIMWLKDGQLIDERDGF 5572
Score = 41.2 bits (95), Expect = 0.28
Identities = 60/256 (23%), Positives = 97/256 (37%), Gaps = 9/256 (3%)
Frame = +2
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEH--LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVT 115
I+WYK++ + S I N L A ED+G Y C N + +
Sbjct: 4403 IMWYKDN----VQVTESSTIQTVNNGKILKLFRATPEDAGRYSCKAINIAGTSQKYFNID 4570
Query: 116 VLENDPGLCYSTQATFPQRLHIA--GDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL- 172
VL P T FP+ + + D +L C + P++ W+K+ KPL L
Sbjct: 4571 VLV--PPTIIGTN--FPKEVSVVLNRDVALECQV------KGTPFPDIHWFKDGKPLFLG 4720
Query: 173 -DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI 231
NV L ++N +G Y C +S GKQ ++ +I P
Sbjct: 4721 DPNVELLDRGQVLHLKNARRNDKGRYQCTVS-NAAGKQAKDIKLTIYI---------PPS 4870
Query: 232 LSPRNETIEADP--GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDY-QFVEHPS 288
+ N T + S+I+L C G + W +G I + L D Q++ P
Sbjct: 4871 IKGGNVTTDISVLINSLIKLECKTRGLPMPAITWYKDGQPIMSSSQALYIDKGQYLHIPR 5050
Query: 289 TKRKYTLITTLNISEV 304
+ + T +++ V
Sbjct: 5051 AQVSDSATYTCHVANV 5098
Score = 37.7 bits (86), Expect = 3.1
Identities = 54/220 (24%), Positives = 81/220 (36%), Gaps = 6/220 (2%)
Frame = +2
Query: 57 TIIWYKNDS----KTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKV 112
TI W + D+ P S S++ + L+ + D G Y C N ++++
Sbjct: 2696 TIKWRRLDNMPIFSRPFSVSSISQL--RTGALFILNLWASDKGTYICEAENQFGKIQSET 2869
Query: 113 TVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL 172
TVTV GL P ++ L P N +PE +W KN LL
Sbjct: 2870 TVTVT----GLVAPLIGISPSVANVIEGQQLTLPCTLL---AGNPIPERRWIKNSAMLLQ 3028
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFI--TIDENKRDRPV 230
+ L + V + G+Y C ++ G T V+ + TI ++
Sbjct: 3029 NPYITVRSDGSLHIERVQLQDGGEYTC-VASNVAGTNNKTTSVVVHVLPTIQHGQQ---- 3193
Query: 231 ILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
ILS TIE P + L C +G V W G I
Sbjct: 3194 ILS----TIEGIP---VTLPCKASGNPKPSVIWSKKGELI 3292
Score = 37.4 bits (85), Expect = 4.0
Identities = 50/221 (22%), Positives = 76/221 (33%), Gaps = 4/221 (1%)
Frame = +2
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKV--EDSGYYYCIVRNSTYCLKTKVTVT 115
+ W N++ P D N H V +V EDSG Y C NS +K V
Sbjct: 13103 LTWTFNNNIIPAHFD------SVNGHSELVIERVSKEDSGTYVCTAENSVGFVKATGFVY 13264
Query: 116 VLENDPGLCYSTQATFPQRL--HIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLD 173
V E + +P + G+ L C + + P +QW + + +
Sbjct: 13265 VKEPPV-----FKGDYPSNWIEPLGGNAILNCEV------KGDPTPTIQWNRKGVDIEIS 13411
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
+ L + E GDY C + + ++ +Q I + L
Sbjct: 13412 HRIRQLGNGSLAIYGTVNEDAGDYTCVATNEAGVVERSMSLTLQSPPI--------ITLE 13567
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWND 274
P I A G I L C TG+ + W G I W+D
Sbjct: 13568 PVETVINA--GGKIILNCQATGEPQPTITWSRQGHSISWDD 13684
Score = 37.0 bits (84), Expect = 5.2
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Frame = +2
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNST------YCLKT 110
TI W+K+ TP+ ++R+ RI L + A+ +++G Y C+ N Y +K
Sbjct: 8048 TITWFKDG--TPLESNRNIRILPGGRTLQILNAQEDNAGRYSCVATNEAGEMIKHYEVKV 8221
Query: 111 KVTVTVLEND---PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNC 167
+ + + D PGL P+ + I + +L +Y + WYK+
Sbjct: 8222 YIPPIINKGDLWGPGLS-------PKEVKIKVNNTLTLECEAYAIPS----ASLSWYKDG 8368
Query: 168 KPLLL-DNVSFFGVKDKLLVRNVAEEHRGDYIC 199
+PL D+V+ L ++ G Y C
Sbjct: 8369 QPLKSDDHVNIAANGHTLQIKEAQISDTGRYTC 8467
>gb|U81035.1|RNU81035 Rattus norvegicus ankyrin binding cell adhesion molecule
neurofascin mRNA, partial cds
Length = 3498
Score = 47.0 bits (110), Expect = 0.005
Identities = 55/214 (25%), Positives = 84/214 (38%), Gaps = 4/214 (1%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
I WYK P +D+ ++ N+ L EDSG Y+C+ N ++ ++V V
Sbjct: 793 IAWYKKGGDLP--SDK-AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 963
Query: 118 ENDPGLCYSTQATFPQRLHIA--GDGSLVCPYVSYFKDENNELPEVQWYKNCKPL--LLD 173
L P+ L +A DG LVC + N P VQW N PL
Sbjct: 964 AAPYWL------DEPKNLILAPGEDGRLVC------RANGNPKPTVQWLVNGDPLQSAPP 1107
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
N + D ++ R+ R Y C S ++ F+++ + P +LS
Sbjct: 1108NPNREVAGDTIIFRDTQISSRAVYQCNTS-----NEHGYLLANAFVSVLDVP---PRMLS 1263
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNG 267
PRN+ I + +L C G + W NG
Sbjct: 1264PRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNG 1365
Score = 45.1 bits (105), Expect = 0.019
Identities = 60/245 (24%), Positives = 89/245 (35%), Gaps = 27/245 (11%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQ-QNEHLWFVPAKVEDSGY-YYCIVR---NSTYCLKTKV 112
+I++ + S PI+ D+ R+ Q N L+F ++D Y C R T K
Sbjct: 424 VIFWMSTSMEPITQDK--RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 597
Query: 113 TVTVLENDP----------------GLCYST------QATFPQRLHIAGDGSLVCPYVSY 150
T+ VL N+P G+ T Q T ++ + G L+ S
Sbjct: 598 TLKVLTNNPYNDSSLRNHPDIYSARGVAERTPSFMYPQGTSSSQMVLRGMDLLLECIAS- 774
Query: 151 FKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQY 210
P++ WYK L D F L + NV+EE G+Y C S ++
Sbjct: 775 ----GVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH 942
Query: 211 PVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
TI + P L I A PG +L+C G V W NG +
Sbjct: 943 ---------TISVRVKAAPYWLDEPKNLILA-PGEDGRLVCRANGNPKPTVQWLVNGDPL 1092
Query: 271 EWNDP 275
+ P
Sbjct: 1093QSAPP 1107
Score = 37.7 bits (86), Expect = 3.1
Identities = 44/173 (25%), Positives = 69/173 (39%)
Frame = +1
Query: 30 NQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPA 89
NQ++ + N + CP + + T+ W+KN + + D + QN L
Sbjct: 1270 NQLIRVILYNRTRL-DCPFFGSPI--PTLRWFKNGQGSNL--DGGNYHVYQNGSLEIKMI 1434
Query: 90 KVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVS 149
+ ED G Y C+ N + +V + V DP Y +A G+ V
Sbjct: 1435 RKEDQGIYTCVATNILGKAENQVRLEV--KDPTRIYRMPED-----QVAKRGTTVQLECR 1593
Query: 150 YFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMS 202
D + +L V W K+ +PL + N D L + VAE +G Y C S
Sbjct: 1594 VKHDPSLKLT-VSWLKDDEPLYIGN-RMKKEDDSLTIFGVAERDQGSYTCMAS 1746
>gb|AY061639.1| Rattus norvegicus neurofascin 155 kDa isoform mRNA, complete cds
Length = 3752
Score = 47.0 bits (110), Expect = 0.005
Identities = 55/214 (25%), Positives = 84/214 (38%), Gaps = 4/214 (1%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
I WYK P +D+ ++ N+ L EDSG Y+C+ N ++ ++V V
Sbjct: 955 IAWYKKGGDLP--SDK-AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 1125
Query: 118 ENDPGLCYSTQATFPQRLHIA--GDGSLVCPYVSYFKDENNELPEVQWYKNCKPL--LLD 173
L P+ L +A DG LVC + N P VQW N PL
Sbjct: 1126 AAPYWL------DEPKNLILAPGEDGRLVC------RANGNPKPTVQWLVNGDPLQSAPP 1269
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
N + D ++ R+ R Y C S ++ F+++ + P +LS
Sbjct: 1270 NPNREVAGDTIIFRDTQISSRAVYQCNTS-----NEHGYLLANAFVSVLDVP---PRMLS 1425
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNG 267
PRN+ I + +L C G + W NG
Sbjct: 1426 PRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNG 1527
Score = 45.4 bits (106), Expect = 0.015
Identities = 60/245 (24%), Positives = 89/245 (35%), Gaps = 27/245 (11%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQ-QNEHLWFVPAKVEDSGY-YYCIVR---NSTYCLKTKV 112
+I++ + S PI+ D+ R+ Q N L+F ++D Y C R T K
Sbjct: 586 VIFWMSSSMEPITQDK--RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 759
Query: 113 TVTVLENDP----------------GLCYST------QATFPQRLHIAGDGSLVCPYVSY 150
T+ VL N+P G+ T Q T ++ + G L+ S
Sbjct: 760 TLKVLTNNPYNDSSLRNHPDIYSARGVAERTPSFMYPQGTSSSQMVLRGMDLLLECIAS- 936
Query: 151 FKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQY 210
P++ WYK L D F L + NV+EE G+Y C S ++
Sbjct: 937 ----GVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH 1104
Query: 211 PVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
TI + P L I A PG +L+C G V W NG +
Sbjct: 1105---------TISVRVKAAPYWLDEPKNLILA-PGEDGRLVCRANGNPKPTVQWLVNGDPL 1254
Query: 271 EWNDP 275
+ P
Sbjct: 1255QSAPP 1269
Score = 36.6 bits (83), Expect = 6.8
Identities = 43/173 (24%), Positives = 69/173 (39%)
Frame = +1
Query: 30 NQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPA 89
NQ++ + N + CP + + T+ W+KN + + D + +N L
Sbjct: 1432 NQLIRVILYNRTRL-DCPFFGSPI--PTLRWFKNGQGSNL--DGGNYHVYENGSLEIKMI 1596
Query: 90 KVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVS 149
+ ED G Y C+ N + +V + V DP Y +A G+ V
Sbjct: 1597 RKEDQGIYTCVATNILGKAENQVRLEV--KDPTRIYRMPED-----QVAKRGTTVQLECR 1755
Query: 150 YFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMS 202
D + +L V W K+ +PL + N D L + VAE +G Y C S
Sbjct: 1756 VKHDPSLKLT-VSWLKDDEPLYIGN-RMKKEDDSLTIFGVAERDQGSYTCMAS 1908
>emb|Z68328.1|HSU72E5 Human DNA sequence from cosmid cU72E5, between markers DXS366 and DXS87
on chromosome X
Length = 44443
Score = 47.0 bits (110), Expect = 0.005
Identities = 34/118 (28%), Positives = 62/118 (51%), Gaps = 9/118 (7%)
Frame = +1
Query: 447 VKKSRRLIIILVRDM---GGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKI------Q 497
V++SRRLII+L D G+S E + ++N L+ IK++L+E ++ Q
Sbjct: 12232 VEQSRRLIIVLTPDYILRRGWSIF----ELESRLHNMLVSGEIKVILIECTELKGKVNCQ 12399
Query: 498 DYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLL 555
+ E + SI+ + +I W G + ++FWK+L Y+MP +++ L + +L
Sbjct: 12400 EVESLKRSIKLLS----LIKWKGS---KSSKLNSKFWKHLVYEMPIKKKEMLPRCHVL 12552
Score = 41.6 bits (96), Expect = 0.21
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +2
Query: 384 DGKTYDAYILYPKTLGEGSFSDL---DTFVFKLLPEVLEGQFGYKLFIYGRD 432
D K YDAY+ Y K + D + F ++LP+VLE +GYKLFI RD
Sbjct: 419 DNKEYDAYLSYTKVDQDTLDCDNPEEEQFALEVLPDVLEKHYGYKLFIPERD 574
>gb|AY075169.1| Drosophila melanogaster AT05815 full length cDNA
Length = 1097
Score = 46.6 bits (109), Expect = 0.007
Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 12/195 (6%)
Frame = +1
Query: 179 GVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNET 238
G + +L++ NV E++G+Y CR + G++ + +++ + + L P T
Sbjct: 25 GSESRLVIDNVTYEYQGEYECRATSYINGQER--VAISDPVSLQVVGAPQVLRLHPSLHT 198
Query: 239 IEADPG---SMIQLICNVTGQFSDLVYWKWNGSEIEWN---DPFLAEDYQFVEHPSTKRK 292
+ G S+ ++C V W+W +E D F A+D Q P T R+
Sbjct: 199 VSVKRGEAASLTMVVC--ADPRPQRVAWEWGSLRLEAGSGIDRFRADDMQ----PDT-RE 357
Query: 293 YTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLI----YPVPDFKNYLIG--GFI 346
++TL+I R P+ VV+N + + LI + P +YL+G G
Sbjct: 358 DCYLSTLHILHADEHDSR-PYYLVVENERGTDRHAIHLIVEGTFAEPYEMSYLMGVAGGC 534
Query: 347 ILTATIVCCVCIYKV 361
+ ++ C+CIY +
Sbjct: 535 MAAILLLVCLCIYAI 579
>emb|AJ306906.1|HSA306906 Homo sapiens partial mRNA for fibulin-6 (FIBL-6 gene)
Length = 8546
Score = 45.8 bits (107), Expect = 0.011
Identities = 50/218 (22%), Positives = 82/218 (36%), Gaps = 3/218 (1%)
Frame = +1
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEN 119
W KN+ PI + ++ I L + AKV D G Y CI N K K ++TV
Sbjct: 106 WLKNEQ--PIKLNTNTLIVPGGRTLQIIRAKVSDGGEYTCIAINQAGESKKKFSLTVYVP 279
Query: 120 DPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPE--VQWYKNCKPLL-LDNVS 176
+ +++ + SL + E+N +P + WYKN + + +V
Sbjct: 280 PSIKDHDSESLSVVNVREGTSVSL--------EXESNAVPPPVITWYKNGRMITESTHVE 435
Query: 177 FFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRN 236
L ++ G Y+CR + G+ + ++ P I P
Sbjct: 436 ILADGQMLHIKKAEVSDTGQYVCR-AINVAGRDDKNFHLNVYVP--------PSIEGPER 588
Query: 237 ETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWND 274
E I + + L C+ TG + W N IE +D
Sbjct: 589 EVIVETISNPVTLTCDATGIPPPTIAWLKNHKRIENSD 702
Score = 36.6 bits (83), Expect = 6.8
Identities = 50/221 (22%), Positives = 76/221 (33%), Gaps = 4/221 (1%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKV--EDSGYYYCIVRNSTYCLKTKVTVT 115
+ W N++ P D N H V +V EDSG Y C NS +K V
Sbjct: 3985 LTWTFNNNIIPAHFD------SVNGHSELVIERVSKEDSGTYVCTAENSVGFVKAIGFVY 4146
Query: 116 VLENDPGLCYSTQATFPQRL--HIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLD 173
V E + +P + G+ L C + + P +QW + + +
Sbjct: 4147 VKEPPV-----FKGDYPSHWIEPLGGNAILNCEV------KGDPTPTIQWNRKGVDIEIS 4293
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
+ L + E GDY C + + ++ +Q I + L
Sbjct: 4294 HRIRQLGNGSLAIYGTVNEDAGDYTCVATNEAGVVERSMSLTLQSPPI--------ITLE 4449
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWND 274
P I A G I L C TG+ + W G I W+D
Sbjct: 4450 PVETVINA--GGKIILNCQATGEPQPTITWSRQGHSISWDD 4566
>ref|NM_013225.1| Rattus norvegicus contactin 6 (Cntn6), mRNA
Length = 3413
Score = 45.4 bits (106), Expect = 0.015
Identities = 52/239 (21%), Positives = 88/239 (36%), Gaps = 2/239 (0%)
Frame = +2
Query: 35 FLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDS 94
+LS+ + +C + N T W KN + + + RI +N L V DS
Sbjct: 1169 YLSIYDSLFWECKASGNPNPSYT--WLKNGERL----NTEERIQTENGTLIITMLNVSDS 1330
Query: 95 GYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDE 154
G Y C N + + VL + P + + + GD S+ C ++ K
Sbjct: 1331 GIYQCAAENKYQTIYANAELRVLASAPDFSKNPIKKISV-VQVGGDISIECKPNAFPK-- 1501
Query: 155 NNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTR 214
+ W + + L FF L + NV G Y C + F + +
Sbjct: 1502 ----ASISWKRGTENLKQSKRVFFLEDGSLKICNVTRSDAGSYTCVATNQFGNGKSSGSL 1669
Query: 215 VIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQ--FSDLVYWKWNGSEIE 271
++ ++R VI P ++ ++ G I L C V+ L W +NG I+
Sbjct: 1670 IV---------KERTVITVPPSK-MDVTVGESIVLPCQVSHDPTMEVLFVWYFNGDVID 1816
Score = 42.7 bits (99), Expect = 0.096
Identities = 62/324 (19%), Positives = 117/324 (35%), Gaps = 12/324 (3%)
Frame = +2
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL-- 117
W ND+ + D+ + Q +L+ + D G Y C V N + T L
Sbjct: 656 WTFNDNPLYVQEDKRRFVSQNTGNLYIAKVEPSDVGNYTCFVTNKEAHRSVQGPPTPLVQ 835
Query: 118 -------ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPL 170
E +P + + FP+ + A D S+ + N +P++ W +
Sbjct: 836 RTDGVMGEYEPKI----EVRFPETIQAAKDSSVKLECFAL----GNPVPDISWRRLDGSP 991
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPV 230
+ V + + L + +E G Y C ++ RG+ ++I + + ++ +
Sbjct: 992 MPGKVKYSNSQATLEIPKFQQEDEGFYEC-VAGNLRGRNLAKGQLIFYAPPEWEQKIQNT 1168
Query: 231 ILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTK 290
LS + C +G + W NG + E T+
Sbjct: 1169YLSIYDSLFWE---------CKASGNPNPSYTWLKNGERLNTE-----------ERIQTE 1288
Query: 291 RKYTLITTLNISEVKSQFYRYPFICVVKN--TNIFESAHVQLIYPVPDF-KNYLIGGFII 347
+IT LN+S+ S Y+ C +N I+ +A ++++ PDF KN + ++
Sbjct: 1289NGTLIITMLNVSD--SGIYQ----CAAENKYQTIYANAELRVLASAPDFSKNPIKKISVV 1450
Query: 348 LTATIVCCVCIYKVFKVDIVLWYR 371
+ C F + W R
Sbjct: 1451QVGGDISIECKPNAFPKASISWKR 1522
>dbj|D87248.1|D87248 Rattus norvegicus mRNA for NB-3, complete cds
Length = 3413
Score = 45.4 bits (106), Expect = 0.015
Identities = 52/239 (21%), Positives = 88/239 (36%), Gaps = 2/239 (0%)
Frame = +2
Query: 35 FLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDS 94
+LS+ + +C + N T W KN + + + RI +N L V DS
Sbjct: 1169 YLSIYDSLFWECKASGNPNPSYT--WLKNGERL----NTEERIQTENGTLIITMLNVSDS 1330
Query: 95 GYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDE 154
G Y C N + + VL + P + + + GD S+ C ++ K
Sbjct: 1331 GIYQCAAENKYQTIYANAELRVLASAPDFSKNPIKKISV-VQVGGDISIECKPNAFPK-- 1501
Query: 155 NNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTR 214
+ W + + L FF L + NV G Y C + F + +
Sbjct: 1502 ----ASISWKRGTENLKQSKRVFFLEDGSLKICNVTRSDAGSYTCVATNQFGNGKSSGSL 1669
Query: 215 VIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQ--FSDLVYWKWNGSEIE 271
++ ++R VI P ++ ++ G I L C V+ L W +NG I+
Sbjct: 1670 IV---------KERTVITVPPSK-MDVTVGESIVLPCQVSHDPTMEVLFVWYFNGDVID 1816
Score = 42.7 bits (99), Expect = 0.096
Identities = 62/324 (19%), Positives = 117/324 (35%), Gaps = 12/324 (3%)
Frame = +2
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL-- 117
W ND+ + D+ + Q +L+ + D G Y C V N + T L
Sbjct: 656 WTFNDNPLYVQEDKRRFVSQNTGNLYIAKVEPSDVGNYTCFVTNKEAHRSVQGPPTPLVQ 835
Query: 118 -------ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPL 170
E +P + + FP+ + A D S+ + N +P++ W +
Sbjct: 836 RTDGVMGEYEPKI----EVRFPETIQAAKDSSVKLECFAL----GNPVPDISWRRLDGSP 991
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPV 230
+ V + + L + +E G Y C ++ RG+ ++I + + ++ +
Sbjct: 992 MPGKVKYSNSQATLEIPKFQQEDEGFYEC-VAGNLRGRNLAKGQLIFYAPPEWEQKIQNT 1168
Query: 231 ILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTK 290
LS + C +G + W NG + E T+
Sbjct: 1169YLSIYDSLFWE---------CKASGNPNPSYTWLKNGERLNTE-----------ERIQTE 1288
Query: 291 RKYTLITTLNISEVKSQFYRYPFICVVKN--TNIFESAHVQLIYPVPDF-KNYLIGGFII 347
+IT LN+S+ S Y+ C +N I+ +A ++++ PDF KN + ++
Sbjct: 1289NGTLIITMLNVSD--SGIYQ----CAAENKYQTIYANAELRVLASAPDFSKNPIKKISVV 1450
Query: 348 LTATIVCCVCIYKVFKVDIVLWYR 371
+ C F + W R
Sbjct: 1451QVGGDISIECKPNAFPKASISWKR 1522
>gb|AF260530.1|AF260530 Drosophila melanogaster Dscam gene, complete cds
Length = 69145
Score = 45.4 bits (106), Expect = 0.015
Identities = 69/309 (22%), Positives = 120/309 (38%), Gaps = 11/309 (3%)
Frame = +1
Query: 74 DSRIHQQNEHLWFVPAKVEDSGYYYCIVRNST--YCLKTKVTVTV---LENDPGLCYSTQ 128
+ R+ Q + L A VEDSG Y C+V NS ++T +TVT + DP
Sbjct: 33238 NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP------ 33399
Query: 129 ATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLL-VR 187
Q + C Y N + V W K+ K + G + +L +
Sbjct: 33400 ---TQTVDFGRPAVFTCQYT------GNPIKTVSWMKDGKAI--------GHSESVLRIE 33528
Query: 188 NVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP-RNETIEADPGSM 246
+V +E +G Y C + + + + D PVI + ET+E PG
Sbjct: 33529 SVKKEDKGMYQCFVRNDRESAEASAELKL------GGRFDPPVIRQAFQEETME--PGPS 33684
Query: 247 IQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKS 306
+ L C G + + W+ +G +I ND + Y V +++ LNI+ V +
Sbjct: 33685 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG-------DVVSYLNITSVHA 33843
Query: 307 Q---FYRYPFICVVKN-TNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y+ C+ K+ + E + +Y +P + + I+ + C +
Sbjct: 33844 NDGGLYK----CIAKSKVGVAEHSAKLNVYGLPYIRQ--MEKKAIVAGETLIVTCPVAGY 34005
Query: 363 KVDIVLWYR 371
+D ++W R
Sbjct: 34006 PIDSIVWER 34032
>dbj|AK056557.1|AK056557 Homo sapiens cDNA FLJ31995 fis, clone NT2RP7009236, weakly similar to
BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN
CORE PROTEIN PRECURSOR
Length = 3870
Score = 45.1 bits (105), Expect = 0.019
Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 8/227 (3%)
Frame = +2
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
I WYK+ PI + + + ++L A+V DS Y C V N + V V
Sbjct: 2063 ITWYKDGQ--PIMSSSQALYIDKGQYLHIPRAQVSDSATYTCHVANVAGTAEKSFHVDVY 2236
Query: 118 ENDPGLCYSTQAT-FPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL-DNV 175
P + AT +++ IA +L C K N P + W K+ P+ DN+
Sbjct: 2237 V--PPMIEGNLATPLNKQVVIAHSLTLEC------KAAGNPSPILTWLKDGVPVKANDNI 2392
Query: 176 SFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPR 235
KL + + E RG YIC ++ + G++ E K + V++ P
Sbjct: 2393 RIEAGGKKLEIMSAQEIDRGQYIC-VATSVAGEK-------------EIKYEVDVLVPPA 2530
Query: 236 NETIEADP------GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPF 276
E + ++++L C+VTG + W +G ++ D F
Sbjct: 2531 IEGGDETSYFIVMVNNLLELDCHVTGSPPPTIMWLKDGQLVDERDGF 2671
Score = 40.8 bits (94), Expect = 0.36
Identities = 60/256 (23%), Positives = 96/256 (37%), Gaps = 9/256 (3%)
Frame = +2
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEH--LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVT 115
I+WYK++ + S I N L A ED+G Y C N + +
Sbjct: 1502 IMWYKDN----VQVTESSTIQTVNNGRILKLFRATPEDAGRYSCKAINIAGTSQKYFNID 1669
Query: 116 VLENDPGLCYSTQATFPQRLHIA--GDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL- 172
VL P T FP + + D +L C + P++ W+K+ KPL L
Sbjct: 1670 VLV--PPTIIGTN--FPNEVSVVLNRDVALECQV------KGTPFPDIHWFKDGKPLFLG 1819
Query: 173 -DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI 231
NV L ++N +G Y C +S GKQ ++ +I P
Sbjct: 1820 DPNVELLDRGQVLHLKNARRNDKGRYQCTVS-NAAGKQAKDIKLTIYI---------PPS 1969
Query: 232 LSPRNETIEADP--GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDY-QFVEHPS 288
+ N T + S+I+L C G + W +G I + L D Q++ P
Sbjct: 1970 IKGGNVTTDISVLINSLIKLECETRGLPMPAITWYKDGQPIMSSSQALYIDKGQYLHIPR 2149
Query: 289 TKRKYTLITTLNISEV 304
+ + T +++ V
Sbjct: 2150 AQVSDSATYTCHVANV 2197
>gb|AE003841.2|AE003841 Drosophila melanogaster genomic scaffold 142000013386047 section 2 of
52, complete sequence
Length = 262082
Score = 45.1 bits (105), Expect = 0.019
Identities = 69/309 (22%), Positives = 120/309 (38%), Gaps = 11/309 (3%)
Frame = -1
Query: 74 DSRIHQQNEHLWFVPAKVEDSGYYYCIVRNST--YCLKTKVTVTV---LENDPGLCYSTQ 128
+ R+ Q + L A VEDSG Y C+V NS ++T +TVT + DP
Sbjct: 94283 NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP------ 94122
Query: 129 ATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLL-VR 187
Q + C Y N + V W K+ K + G + +L +
Sbjct: 94121 ---TQTVDFGRPAVFTCQYT------GNPIKTVSWMKDGKAI--------GHSEPVLRIE 93993
Query: 188 NVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP-RNETIEADPGSM 246
+V +E +G Y C + + + + D PVI + ET+E PG
Sbjct: 93992 SVKKEDKGMYQCFVRNDQESAEASAELKL------GGRFDPPVIRQAFQEETME--PGPS 93837
Query: 247 IQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKS 306
+ L C G + + W+ +G +I ND + Y V +++ LNI+ V +
Sbjct: 93836 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG-------DVVSYLNITSVHA 93678
Query: 307 Q---FYRYPFICVVKN-TNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y+ C+ K+ + E + +Y +P + + I+ + C +
Sbjct: 93677 NDGGLYK----CIAKSKVGVAEHSAKLNVYGLPYIRQ--MEKKAIVAGETLIVTCPVAGY 93516
Query: 363 KVDIVLWYR 371
+D ++W R
Sbjct: 93515 PIDSIVWER 93489
>gb|AC009739.3|AC009739 Drosophila melanogaster, chromosome 2R, region 43B-43B, BAC clone
BACR26B18, complete sequence
Length = 173640
Score = 45.1 bits (105), Expect = 0.019
Identities = 69/309 (22%), Positives = 120/309 (38%), Gaps = 11/309 (3%)
Frame = -3
Query: 74 DSRIHQQNEHLWFVPAKVEDSGYYYCIVRNST--YCLKTKVTVTV---LENDPGLCYSTQ 128
+ R+ Q + L A VEDSG Y C+V NS ++T +TVT + DP
Sbjct: 101830 NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP------ 101669
Query: 129 ATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLL-VR 187
Q + C Y N + V W K+ K + G + +L +
Sbjct: 101668 ---TQTVDFGRPAVFTCQYT------GNPIKTVSWMKDGKAI--------GHSEPVLRIE 101540
Query: 188 NVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP-RNETIEADPGSM 246
+V +E +G Y C + + + + D PVI + ET+E PG
Sbjct: 101539 SVKKEDKGMYQCFVRNDQESAEASAELKL------GGRFDPPVIRQAFQEETME--PGPS 101384
Query: 247 IQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKS 306
+ L C G + + W+ +G +I ND + Y V +++ LNI+ V +
Sbjct: 101383 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG-------DVVSYLNITSVHA 101225
Query: 307 Q---FYRYPFICVVKN-TNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVF 362
Y+ C+ K+ + E + +Y +P + + I+ + C +
Sbjct: 101224 NDGGLYK----CIAKSKVGVAEHSAKLNVYGLPYIRQ--MEKKAIVAGETLIVTCPVAGY 101063
Query: 363 KVDIVLWYR 371
+D ++W R
Sbjct: 101062 PIDSIVWER 101036
>gb|M74387.1|HUML1CAM Human cell adhesion molecule L1 (L1CAM) mRNA, complete cds
Length = 3888
Score = 45.1 bits (105), Expect = 0.019
Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 11/256 (4%)
Frame = +3
Query: 27 EYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQ-QNEHLW 85
++P + V + V E + P P I++ N I +D R+ QN +L+
Sbjct: 420 KWPKETVKPVEVEEGESVVLPCNPPPSAEPLRIYWMNSKILHIK--QDERVTMGQNGNLY 593
Query: 86 FVPAKVEDS-GYYYC---------IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRL 135
F D+ Y C I++ L+ K T ++++ P L + T ++
Sbjct: 594 FANVLTSDNHSDYICHAHFPGTRTIIQKEPIDLRVKATNSMIDRKPRLLFPTNSSSHL-- 767
Query: 136 HIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRG 195
+A G P V E P ++W + P+ D V++ L + V EE G
Sbjct: 768 -VALQGQ---PLVLECIAEGFPTPTIKWLRPSGPMPADRVTYQNHNKTLQLLKVGEEDDG 935
Query: 196 DYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTG 255
+Y C + R ++T++ P L + PG +L C V G
Sbjct: 936 EYRCLAENSLGS-----ARHAYYVTVEA----APYWLHKPQSHLYG-PGETARLDCQVQG 1085
Query: 256 QFSDLVYWKWNGSEIE 271
+ V W+ NG +E
Sbjct: 1086RPQPEVTWRINGIPVE 1133
>ref|NM_024003.1| Homo sapiens L1 cell adhesion molecule (hydrocephalus, stenosis of
aqueduct of Sylvius 1, MASA (mental retardation,
aphasia, shuffling gait and adducted thumbs) syndrome,
spastic paraplegia 1) (L1CAM), transcript variant 2,
mRNA
Length = 4513
Score = 45.1 bits (105), Expect = 0.019
Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 11/256 (4%)
Frame = +3
Query: 27 EYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQ-QNEHLW 85
++P + V + V E + P P I++ N I +D R+ QN +L+
Sbjct: 429 KWPKETVKPVEVEEGESVVLPCNPPPSAEPLRIYWMNSKILHIK--QDERVTMGQNGNLY 602
Query: 86 FVPAKVEDS-GYYYC---------IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRL 135
F D+ Y C I++ L+ K T ++++ P L + T ++
Sbjct: 603 FANVLTSDNHSDYICHAHFPGTRTIIQKEPIDLRVKATNSMIDRKPRLLFPTNSSSHL-- 776
Query: 136 HIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRG 195
+A G P V E P ++W + P+ D V++ L + V EE G
Sbjct: 777 -VALQGQ---PLVLECIAEGFPTPTIKWLRPSGPMPADRVTYQNHNKTLQLLKVGEEDDG 944
Query: 196 DYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTG 255
+Y C + R ++T++ P L + PG +L C V G
Sbjct: 945 EYRCLAENSLGS-----ARHAYYVTVEA----APYWLHKPQSHLYG-PGETARLDCQVQG 1094
Query: 256 QFSDLVYWKWNGSEIE 271
+ V W+ NG +E
Sbjct: 1095RPQPEVTWRINGIPVE 1142
>gb|M77640.1|HUMIGL1A Homo sapiens L1 cell adhesion molecule (L1CAM) mRNA, complete cds
Length = 4523
Score = 45.1 bits (105), Expect = 0.019
Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 11/256 (4%)
Frame = +3
Query: 27 EYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQ-QNEHLW 85
++P + V + V E + P P I++ N I +D R+ QN +L+
Sbjct: 429 KWPKETVKPVEVEEGESVVLPCNPPPSAEPLRIYWMNSKILHIK--QDERVTMGQNGNLY 602
Query: 86 FVPAKVEDS-GYYYC---------IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRL 135
F D+ Y C I++ L+ K T ++++ P L + T ++
Sbjct: 603 FANVLTSDNHSDYICHAHFPGTRTIIQKEPIDLRVKATNSMIDRKPRLLFPTNSSSHL-- 776
Query: 136 HIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRG 195
+A G P V E P ++W + P+ D V++ L + V EE G
Sbjct: 777 -VALQGQ---PLVLECIAEGFPTPTIKWLRPSGPMPADRVTYQNHNKTLQLLKVGEEDDG 944
Query: 196 DYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTG 255
+Y C + R ++T++ P L + PG +L C V G
Sbjct: 945 EYRCLAENSLGS-----ARHAYYVTVEA----APYWLHKPQSHLYG-PGETARLDCQVQG 1094
Query: 256 QFSDLVYWKWNGSEIE 271
+ V W+ NG +E
Sbjct: 1095RPQPEVTWRINGIPVE 1142
>ref|NM_000425.2| Homo sapiens L1 cell adhesion molecule (hydrocephalus, stenosis of
aqueduct of Sylvius 1, MASA (mental retardation,
aphasia, shuffling gait and adducted thumbs) syndrome,
spastic paraplegia 1) (L1CAM), transcript variant 1,
mRNA
Length = 4525
Score = 45.1 bits (105), Expect = 0.019
Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 11/256 (4%)
Frame = +3
Query: 27 EYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQ-QNEHLW 85
++P + V + V E + P P I++ N I +D R+ QN +L+
Sbjct: 429 KWPKETVKPVEVEEGESVVLPCNPPPSAEPLRIYWMNSKILHIK--QDERVTMGQNGNLY 602
Query: 86 FVPAKVEDS-GYYYC---------IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRL 135
F D+ Y C I++ L+ K T ++++ P L + T ++
Sbjct: 603 FANVLTSDNHSDYICHAHFPGTRTIIQKEPIDLRVKATNSMIDRKPRLLFPTNSSSHL-- 776
Query: 136 HIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRG 195
+A G P V E P ++W + P+ D V++ L + V EE G
Sbjct: 777 -VALQGQ---PLVLECIAEGFPTPTIKWLRPSGPMPADRVTYQNHNKTLQLLKVGEEDDG 944
Query: 196 DYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTG 255
+Y C + R ++T++ P L + PG +L C V G
Sbjct: 945 EYRCLAENSLGS-----ARHAYYVTVEA----APYWLHKPQSHLYG-PGETARLDCQVQG 1094
Query: 256 QFSDLVYWKWNGSEIE 271
+ V W+ NG +E
Sbjct: 1095RPQPEVTWRINGIPVE 1142
>ref|NM_017383.1| Mus musculus contactin 6 (Cntn6), mRNA
Length = 3087
Score = 44.7 bits (104), Expect = 0.025
Identities = 63/320 (19%), Positives = 119/320 (36%), Gaps = 8/320 (2%)
Frame = +1
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRN--STYCLKTKVTVTVL 117
W NDS + D+ + Q +L+F + D G Y C V N + ++ T VL
Sbjct: 469 WTFNDSPLYVQEDKRRFVSQDTGNLYFAKVEPSDVGNYTCFVTNKEAHRSVQGPPTPLVL 648
Query: 118 ENDPGLCY---STQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDN 174
D + + FP+ + A D S+ + N +P++ W + +
Sbjct: 649 RTDGVMGEYEPKIEVRFPETIQAAKDSSIKLECFAL----GNPVPDISWRRLDGSPMPGK 816
Query: 175 VSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP 234
+ + + L + +E G Y C ++ RG+ ++I + + ++ + LS
Sbjct: 817 IKYSKSQAILEIPKFQQEDEGFYEC-IAGNLRGRNLAKGQLIFYAPPEWEQKIQNTYLSI 993
Query: 235 RNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYT 294
+ C +G + W NG + + E+ +
Sbjct: 994 YDSLFWE---------CKASGNPNPSYTWLKNGQRLNTEERIQIENGTLI---------- 1116
Query: 295 LITTLNISEVKSQFYRYPFICVVKN--TNIFESAHVQLIYPVPDF-KNYLIGGFIILTAT 351
IT LNIS+ S Y+ C +N I+ +A ++++ PDF KN + ++
Sbjct: 1117-ITMLNISD--SGIYQ----CAAENKYQTIYANAELRVLASAPDFSKNPIKKISVVQVGG 1275
Query: 352 IVCCVCIYKVFKVDIVLWYR 371
+ C F + W R
Sbjct: 1276DISIECKPNAFPKASISWKR 1335
>dbj|AB032602.1|AB032602 Mus musculus mNB-3 mRNA for neural recognition molecule NB-3,
complete cds
Length = 3087
Score = 44.7 bits (104), Expect = 0.025
Identities = 63/320 (19%), Positives = 119/320 (36%), Gaps = 8/320 (2%)
Frame = +1
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRN--STYCLKTKVTVTVL 117
W NDS + D+ + Q +L+F + D G Y C V N + ++ T VL
Sbjct: 469 WTFNDSPLYVQEDKRRFVSQDTGNLYFAKVEPSDVGNYTCFVTNKEAHRSVQGPPTPLVL 648
Query: 118 ENDPGLCY---STQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDN 174
D + + FP+ + A D S+ + N +P++ W + +
Sbjct: 649 RTDGVMGEYEPKIEVRFPETIQAAKDSSIKLECFAL----GNPVPDISWRRLDGSPMPGK 816
Query: 175 VSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP 234
+ + + L + +E G Y C ++ RG+ ++I + + ++ + LS
Sbjct: 817 IKYSKSQAILEIPKFQQEDEGFYEC-IAGNLRGRNLAKGQLIFYAPPEWEQKIQNTYLSI 993
Query: 235 RNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYT 294
+ C +G + W NG + + E+ +
Sbjct: 994 YDSLFWE---------CKASGNPNPSYTWLKNGQRLNTEERIQIENGTLI---------- 1116
Query: 295 LITTLNISEVKSQFYRYPFICVVKN--TNIFESAHVQLIYPVPDF-KNYLIGGFIILTAT 351
IT LNIS+ S Y+ C +N I+ +A ++++ PDF KN + ++
Sbjct: 1117-ITMLNISD--SGIYQ----CAAENKYQTIYANAELRVLASAPDFSKNPIKKISVVQVGG 1275
Query: 352 IVCCVCIYKVFKVDIVLWYR 371
+ C F + W R
Sbjct: 1276DISIECKPNAFPKASISWKR 1335
>emb|Y14852.1|OCY14852 Oryctolagus cuniculus mRNA for tintin (N2A)
Length = 18848
Score = 44.7 bits (104), Expect = 0.025
Identities = 39/146 (26%), Positives = 62/146 (41%), Gaps = 3/146 (2%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
T+ W K+ K P D + L AK++DSG Y C N + +VTV
Sbjct: 1846 TVTWNKDGQKLPPGKDYKIYFEDKIASLEIPLAKLKDSGTYVCTASNEAGSSSSSTSVTV 2025
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDN-- 174
E P + P L + G+ + + + K + + + +V W+KN K L N
Sbjct: 2026 RE-PPSF---VKKVDPSYLMLPGESARL-----HCKLKGSPVIQVTWFKNNKELSESNTV 2178
Query: 175 -VSFFGVKDKLLVRNVAEEHRGDYIC 199
+SF + L + +V E G+Y C
Sbjct: 2179 RMSFVHSEAILDITDVKVEDSGNYSC 2256
Score = 43.1 bits (100), Expect = 0.073
Identities = 54/216 (25%), Positives = 74/216 (34%), Gaps = 3/216 (1%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
+ WYK D+K +A L F DSG Y C NS + + +TV
Sbjct: 14800 VSWYKGDTKLRPTATYKMHFRNNVATLVFNQVDSNDSGEYICRAENSVGEVSSSTFLTVQ 14979
Query: 118 ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSF 177
E +S Q Q ++ P V +E V WYK+ KPL
Sbjct: 14980 EQKLPPSFSRQLRDVQE-------TVGLPVVFECTVNGSEPISVSWYKDGKPLKDSPNVQ 15138
Query: 178 FGVKDKLLVRNVAEEHR---GDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP 234
D N+ + R G Y C + G R+I + E K P
Sbjct: 15139 TSFLDNTATLNIFKTDRSLAGQYSCTATNPI-GSASSSARLI----LTEGK--NPPFFDI 15297
Query: 235 RNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
T++A G C+VTG V W + EI
Sbjct: 15298 PLATVDAVVGESADFECHVTGTQPIKVSWAKDNREI 15405
Score = 42.7 bits (99), Expect = 0.096
Identities = 50/219 (22%), Positives = 80/219 (35%), Gaps = 5/219 (2%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVL 117
+IW KN S + + + L + VED+G Y C + N++ + +L
Sbjct: 14521 VIWKKNGVLVSPSQRCNITTTENSAILEIPSSTVEDAGQYNCYIENASGKDSCSAQILIL 14700
Query: 118 ENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPE--VQWYK---NCKPLLL 172
E Y + P ++ + SL C PE V WYK +P
Sbjct: 14701 EPP----YFVKQLEPVKVTVGDAASLQCQLAG--------TPEIAVSWYKGDTKLRPTAT 14844
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
+ F L+ V G+YICR + G+ T F+T+ E K P
Sbjct: 14845 YKMHFRNNVATLVFNQVDSNDSGEYICRAENSV-GEVSSST----FLTVQEQK--LPPSF 15003
Query: 233 SPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
S + ++ G + C V G V W +G ++
Sbjct: 15004 SRQLRDVQETVGLPVVFECTVNGSEPISVSWYKDGKPLK 15120
Score = 39.3 bits (90), Expect = 1.1
Identities = 52/224 (23%), Positives = 83/224 (36%), Gaps = 10/224 (4%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
T+ WYK D+K + + + L F + DSG Y CI NS +K +
Sbjct: 9151 TVSWYKGDTKLRSTPEYRTYFTNNVATLVFNKVNINDSGEYTCIAENSIGTASSKTVFRI 9330
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP-EVQWYK---------N 166
E ++ Q ++ + +L C N P +V WY+ N
Sbjct: 9331 QERQLPPSFARQLKDIEQT-VGLPVTLTCRL-------NGSAPIQVCWYRDGVLLRDDEN 9486
Query: 167 CKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKR 226
+ +DNV+ K+L +++ H G Y C S G R +T E K+
Sbjct: 9487 LQTSFVDNVATL----KILQTDLS--HSGQYSCSASNPL-GTASSSAR----LTAREPKK 9633
Query: 227 DRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
+ P +I+ G C+VTG + W + EI
Sbjct: 9634 SPFFDIKP--VSIDVIAGESADFECHVTGAQPMRITWSKDNKEI 9759
Score = 38.5 bits (88), Expect = 1.8
Identities = 50/220 (22%), Positives = 88/220 (39%), Gaps = 6/220 (2%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVT 115
++ W+K+ + +D + +N L F A+ ++G Y C ++N + T++
Sbjct: 13390 SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 13569
Query: 116 VLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEV--QWYKNCKPLLLD 173
VLE P + R+ +L C PE+ +W+K+ K L D
Sbjct: 13570 VLE--PAAIVEKPESI--RVTTGDTCTLECTVTG--------TPELTTKWFKDGKELTSD 13713
Query: 174 N---VSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPV 230
+ +SFF L + NVA G Y + Q PV + ++ + R P
Sbjct: 13714 SKYKISFFNKVSGLKIINVAPSDSGVYSFEV-------QNPVGKDSCTASVQVSDRIIPP 13872
Query: 231 ILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
+ + + GS + + C V G V W +G+EI
Sbjct: 13873 SFTRKLKETHGLTGSSVVMECKVYGSPPISVSWFHDGNEI 13992
Score = 37.0 bits (84), Expect = 5.2
Identities = 50/231 (21%), Positives = 78/231 (33%), Gaps = 7/231 (3%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
TI W+K++ + A R + L AK D+G Y C + N +K T+ V
Sbjct: 5218 TIKWFKDNKELHSGAARSVWKDDTSTILELFSAKAADAGTYICQLSNDVGIATSKATLFV 5397
Query: 117 LE-------NDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKP 169
E P L + + G + VS++ D NE+ +++ +
Sbjct: 5398 KEPPQFIKKPSPVLVLRNGQSTTFECQVTGTPEI---RVSWYLD-GNEITDIRKH----- 5550
Query: 170 LLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRP 229
+SF + E+ G Y+C + E K P
Sbjct: 5551 ----GISFIDGLATFQISGARVENSGTYVCEARNDAGTASCSI----------ELKVKEP 5688
Query: 230 VILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAED 280
+ +EA S +QL C VTG V W N EI + D
Sbjct: 5689 PTFIRELKPVEAVKDSDVQLECEVTGTPPFEVTWLKNNKEIRSGKKYTLTD 5841
Score = 36.6 bits (83), Expect = 6.8
Identities = 40/154 (25%), Positives = 63/154 (39%), Gaps = 8/154 (5%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRN---STYCLKTKVT 113
T+ WYKN+ + + + + L A + D+G Y C V N S C T
Sbjct: 15664 TVAWYKNNVEIHPTPNCEITFKNNALLLQIKKAGMADAGLYTCKVSNDAGSALC-----T 15828
Query: 114 VTVLENDPGLCYSTQATFPQRLH--IAGDGSLVCPYVSYFKDENNELPEVQWYK---NCK 168
+++ +P F Q L A +G V + +E +QW K K
Sbjct: 15829 SSIVIKEP----KKSPVFDQHLTPVTASEGEFVQLSCHV---QGSEPIRIQWLKAGREIK 15987
Query: 169 PLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMS 202
P + SF G L +++VA+ GDY+C+ S
Sbjct: 15988 PSDRCSFSFAGGTAVLELKDVAKADSGDYVCKAS 16089
>gb|M77165.1|DROFAS2A D.melanogaster fasciclin II (Fas2) mRNA, complete cds
Length = 2818
Score = 44.3 bits (103), Expect = 0.033
Identities = 80/331 (24%), Positives = 121/331 (36%), Gaps = 18/331 (5%)
Frame = +2
Query: 7 LLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKC-PLTPNKMHGDTIIWYKNDS 65
LL C ++ L + + YP Q V V + I C P P + W N +
Sbjct: 404 LLLCSCSLIELTRAQSPILEIYPKQEVQRKPVGKPLILTCRPTVPEPSLVADLQWKDNRN 583
Query: 66 KTPISADRDSR--------IHQQNEHLWFVPAKVEDSGYYYCI-------VRNSTYCLKT 110
T + + ++ L VE G YYC + +KT
Sbjct: 584 NTILPKPNGRNQPPMYTETLPGESLALMITSLSVEMGGKYYCTASYANTEILEKGVTIKT 763
Query: 111 KVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPL 170
V +T N P Y T + D ++C + D N P + W +N P+
Sbjct: 764 YVAIT-WTNAPENQYPT---------LGQDYVVMCEVKA---DPN---PTIDWLRNGDPI 895
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVT-RVIQFITIDENKRDRP 229
N + + LL+RNV E G Y CR + G+ T RV FI +P
Sbjct: 896 RTTNDKYVVQTNGLLIRNVQESDEGIYTCRAAVIETGELLERTIRVEVFI--------QP 1051
Query: 230 VILS-PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPS 288
I+S P N +EA G C G+ + W + +++ +A +F +P
Sbjct: 1052EIISLPTN--LEAVEGKPFAANCTARGKPVPEISWIRDATQLN-----VATADRFQVNPQ 1210
Query: 289 TKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
T L+T IS V Y + C+ KN
Sbjct: 1211T----GLVT---ISSVSQDDYG-TYTCLAKN 1279
>ref|NM_080327.1| Drosophila melanogaster Fasciclin 2 (Fas2), mRNA
Length = 3070
Score = 44.3 bits (103), Expect = 0.033
Identities = 80/331 (24%), Positives = 121/331 (36%), Gaps = 18/331 (5%)
Frame = +2
Query: 7 LLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKC-PLTPNKMHGDTIIWYKNDS 65
LL C ++ L + + YP Q V V + I C P P + W N +
Sbjct: 404 LLLCSCSLIELTRAQSPILEIYPKQEVQRKPVGKPLILTCRPTVPEPSLVADLQWKDNRN 583
Query: 66 KTPISADRDSR--------IHQQNEHLWFVPAKVEDSGYYYCI-------VRNSTYCLKT 110
T + + ++ L VE G YYC + +KT
Sbjct: 584 NTILPKPNGRNQPPMYTETLPGESLALMITSLSVEMGGKYYCTASYANTEILEKGVTIKT 763
Query: 111 KVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPL 170
V +T N P Y T + D ++C + D N P + W +N P+
Sbjct: 764 YVAIT-WTNAPENQYPT---------LGQDYVVMCEVKA---DPN---PTIDWLRNGDPI 895
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVT-RVIQFITIDENKRDRP 229
N + + LL+RNV E G Y CR + G+ T RV FI +P
Sbjct: 896 RTTNDKYVVQTNGLLIRNVQESDEGIYTCRAAVIETGELLERTIRVEVFI--------QP 1051
Query: 230 VILS-PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPS 288
I+S P N +EA G C G+ + W + +++ +A +F +P
Sbjct: 1052EIISLPTN--LEAVEGKPFAANCTARGKPVPEISWIRDATQLN-----VATADRFQVNPQ 1210
Query: 289 TKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
T L+T IS V Y + C+ KN
Sbjct: 1211T----GLVT---ISSVSQDDYG-TYTCLAKN 1279
>gb|M77166.1|DROFAS2B D.melanogaster fasciclin II (Fas2) mRNA, complete cds
Length = 3070
Score = 44.3 bits (103), Expect = 0.033
Identities = 80/331 (24%), Positives = 121/331 (36%), Gaps = 18/331 (5%)
Frame = +2
Query: 7 LLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKC-PLTPNKMHGDTIIWYKNDS 65
LL C ++ L + + YP Q V V + I C P P + W N +
Sbjct: 404 LLLCSCSLIELTRAQSPILEIYPKQEVQRKPVGKPLILTCRPTVPEPSLVADLQWKDNRN 583
Query: 66 KTPISADRDSR--------IHQQNEHLWFVPAKVEDSGYYYCI-------VRNSTYCLKT 110
T + + ++ L VE G YYC + +KT
Sbjct: 584 NTILPKPNGRNQPPMYTETLPGESLALMITSLSVEMGGKYYCTASYANTEILEKGVTIKT 763
Query: 111 KVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPL 170
V +T N P Y T + D ++C + D N P + W +N P+
Sbjct: 764 YVAIT-WTNAPENQYPT---------LGQDYVVMCEVKA---DPN---PTIDWLRNGDPI 895
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVT-RVIQFITIDENKRDRP 229
N + + LL+RNV E G Y CR + G+ T RV FI +P
Sbjct: 896 RTTNDKYVVQTNGLLIRNVQESDEGIYTCRAAVIETGELLERTIRVEVFI--------QP 1051
Query: 230 VILS-PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPS 288
I+S P N +EA G C G+ + W + +++ +A +F +P
Sbjct: 1052EIISLPTN--LEAVEGKPFAANCTARGKPVPEISWIRDATQLN-----VATADRFQVNPQ 1210
Query: 289 TKRKYTLITTLNISEVKSQFYRYPFICVVKN 319
T L+T IS V Y + C+ KN
Sbjct: 1211T----GLVT---ISSVSQDDYG-TYTCLAKN 1279
>gb|U80022.2| Caenorhabditis elegans cosmid F12F3, complete sequence
Length = 36859
Score = 44.3 bits (103), Expect = 0.033
Identities = 52/247 (21%), Positives = 91/247 (36%), Gaps = 15/247 (6%)
Frame = -3
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQ--NEHLWFVPAKVEDSGY 96
+E DI K + I W++N+S+ S + N L + A EDSG
Sbjct: 7052 SESDILKLEVNIQANPAPEINWFRNESEIEHSQHHRLQFDDGSGNYSLTIIDAYAEDSGE 6873
Query: 97 YYCIVRNSTYCLKTKVTVTV----------LENDPGLCYSTQATFPQRLHIAGDGSLVCP 146
Y C+ +N T V + ++ + Q P+ + D +LVC
Sbjct: 6872 YKCVAKNKIGKAHTVCCVRIEELLSKRSKKIDGSKAPRFRMQLPTPREVPQGADLTLVCS 6693
Query: 147 YVSYFKDENNELPEVQWYKNCKPLLLDN--VSFFGVKDKLLVRNVAEEHRGDYICRMSYT 204
P ++W K+ KP+ + N V L + ++ +G Y+C
Sbjct: 6692 V------SGTPHPNIKWTKDDKPIDMSNKQVRHENGVCTLHIIGARDDDQGRYVCEAENI 6531
Query: 205 FR-GKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYW 263
+ + V + + + D RP L P + M+ L C VTG+ + W
Sbjct: 6530 HGVAQSFSVVEIKEAVDKD---HVRPKFLEPLVNCSTCEGNEMV-LECCVTGKPIPTITW 6363
Query: 264 KWNGSEI 270
+G ++
Sbjct: 6362 YKDGLKL 6342
Score = 42.0 bits (97), Expect = 0.16
Identities = 47/230 (20%), Positives = 81/230 (34%), Gaps = 16/230 (6%)
Frame = -3
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPA-KVEDSGYYYCIVRNSTYCLKTKVTVT 115
T+ W+K+D + + + +++ H A + +D+G Y C+V N +++ V
Sbjct: 4415 TVAWFKDDERIESAGRYELSSDKKSNHKLVCHAVQSQDTGKYRCVVTNKYGYAESECNVA 4236
Query: 116 VLENDPGLCYSTQATFPQRLHIAGDG-SLVCPYVSYFKDENNELPEVQWYKNCKPL---- 170
V + + S AT I G +L C K E + PEV W K+ + +
Sbjct: 4235 VEDVTKFIAPSFSATLSDSTAILGHNITLEC------KVEGSPAPEVSWTKDGERISTTR 4074
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYIC----------RMSYTFRGKQYPVTRVIQFIT 220
+ KL + + G Y+C S K +
Sbjct: 4073 RIRQTQDENGNCKLSISKAESDDMGVYVCSATSVAGVDSTSSMVMIAKTTGTDSHLVIAQ 3894
Query: 221 IDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
+ K ++P IE + LI G+ V W +G EI
Sbjct: 3893 TADEKHEKPRFTRAPPSLIEVNESGQFTLIAKAVGEPKPTVTWLKDGREI 3744
>dbj|AK056544.1|AK056544 Homo sapiens cDNA FLJ31982 fis, clone NT2RP7008550, highly similar to
Mus musculus rig-1 protein mRNA
Length = 3384
Score = 44.3 bits (103), Expect = 0.033
Identities = 76/297 (25%), Positives = 115/297 (38%), Gaps = 14/297 (4%)
Frame = +2
Query: 38 VNEIDIRKCPLT-PNKMHGDT---IIWYKNDSKTPISADRDSRIHQQNEH-LWFVPAKVE 92
VN++ + P+T ++ GD + W K D + P R +++H LW E
Sbjct: 962 VNQVVLADAPVTFLCEVKGDPPPRLRWRKEDGELPTG-----RYEIRSDHSLWIGHVSAE 1126
Query: 93 DSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFK 152
D G Y C+ NS + +++V P L T PQ +A G V +
Sbjct: 1127 DEGTYTCVAENSVGRAEASGSLSV-HVPPQL-----VTQPQD-QMAAPGESVA---FQCE 1276
Query: 153 DENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVR-----NVAEEHRGD---YICRMSYT 204
+ N P + W K +LL + V N+ RGD Y+C+
Sbjct: 1277 TKGNPPPAIFWQKEGSQVLLFPSQSLQPTGRFSVSPRGQLNITAVQRGDAGYYMCQAVSV 1456
Query: 205 FRGKQYPVTRVIQFITIDENKRDRPVILS-PRNETIEADPGSMIQLICNVTGQFSDLVYW 263
I+ ++D PVIL P N+T+ GS + L C VTG V W
Sbjct: 1457 AGSILAKALLEIKGASLDGLP---PVILQGPANQTLVL--GSSVWLPCRVTGNPQPSVRW 1621
Query: 264 KWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNT 320
K +G ++ +D QF T TL N+ E+ FY CV K++
Sbjct: 1622 KKDGQWLQ------GDDLQF----KTMANGTLYIA-NVQEMDMGFYS----CVAKSS 1747
>ref|NM_072181.1| titin
Length = 8352
Score = 44.3 bits (103), Expect = 0.033
Identities = 52/247 (21%), Positives = 91/247 (36%), Gaps = 15/247 (6%)
Frame = +1
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQ--NEHLWFVPAKVEDSGY 96
+E DI K + I W++N+S+ S + N L + A EDSG
Sbjct: 2263 SESDILKLEVNIQANPAPEINWFRNESEIEHSQHHRLQFDDGSGNYSLTIIDAYAEDSGE 2442
Query: 97 YYCIVRNSTYCLKTKVTVTV----------LENDPGLCYSTQATFPQRLHIAGDGSLVCP 146
Y C+ +N T V + ++ + Q P+ + D +LVC
Sbjct: 2443 YKCVAKNKIGKAHTVCCVRIEELLSKRSKKIDGSKAPRFRMQLPTPREVPQGADLTLVCS 2622
Query: 147 YVSYFKDENNELPEVQWYKNCKPLLLDN--VSFFGVKDKLLVRNVAEEHRGDYICRMSYT 204
P ++W K+ KP+ + N V L + ++ +G Y+C
Sbjct: 2623 V------SGTPHPNIKWTKDDKPIDMSNKQVRHENGVCTLHIIGARDDDQGRYVCEAENI 2784
Query: 205 FR-GKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYW 263
+ + V + + + D RP L P + M+ L C VTG+ + W
Sbjct: 2785 HGVAQSFSVVEIKEAVDKD---HVRPKFLEPLVNCSTCEGNEMV-LECCVTGKPIPTITW 2952
Query: 264 KWNGSEI 270
+G ++
Sbjct: 2953 YKDGLKL 2973
Score = 42.0 bits (97), Expect = 0.16
Identities = 47/230 (20%), Positives = 81/230 (34%), Gaps = 16/230 (6%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPA-KVEDSGYYYCIVRNSTYCLKTKVTVT 115
T+ W+K+D + + + +++ H A + +D+G Y C+V N +++ V
Sbjct: 4900 TVAWFKDDERIESAGRYELSSDKKSNHKLVCHAVQSQDTGKYRCVVTNKYGYAESECNVA 5079
Query: 116 VLENDPGLCYSTQATFPQRLHIAGDG-SLVCPYVSYFKDENNELPEVQWYKNCKPL---- 170
V + + S AT I G +L C K E + PEV W K+ + +
Sbjct: 5080 VEDVTKFIAPSFSATLSDSTAILGHNITLEC------KVEGSPAPEVSWTKDGERISTTR 5241
Query: 171 LLDNVSFFGVKDKLLVRNVAEEHRGDYIC----------RMSYTFRGKQYPVTRVIQFIT 220
+ KL + + G Y+C S K +
Sbjct: 5242 RIRQTQDENGNCKLSISKAESDDMGVYVCSATSVAGVDSTSSMVMIAKTTGTDSHLVIAQ 5421
Query: 221 IDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
+ K ++P IE + LI G+ V W +G EI
Sbjct: 5422 TADEKHEKPRFTRAPPSLIEVNESGQFTLIAKAVGEPKPTVTWLKDGREI 5571
>emb|X16841.1|HSNCAME Human mRNA for a nontransmembrane isoform of N-CAM from skeletal
muscle
Length = 2799
Score = 43.9 bits (102), Expect = 0.043
Identities = 62/276 (22%), Positives = 105/276 (37%), Gaps = 5/276 (1%)
Frame = +2
Query: 1 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
M K L+ + + +SL++D+ +SV E C + + D +
Sbjct: 146 MLQTKDLIWTLFFLGTAVSLQVDIVPSQGE-----ISVGESKFFLCQVAGDAKDKDISWF 310
Query: 61 YKNDSKTPISADRDSRIHQQNEH--LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLE 118
N K + R S + + L A ++D+G Y C+V +++ TV V +
Sbjct: 311 SPNGEKLTPNQQRISVVWNDDSSSTLTIYNANIDDAGIYKCVVTGEDGS-ESEATVNV-K 484
Query: 119 NDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQW-YKNCKPLLLDNVSF 177
L + T PQ D +VC VS P + W +K +L +V F
Sbjct: 485 IFQKLMFKNAPT-PQEFREGEDAVIVCDVVSSLP------PTIIWKHKGRDVILKKDVRF 643
Query: 178 FGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRN 236
+ + L +R + + G Y C RG+ I F I P I + +N
Sbjct: 644 IVLSNNYLQIRGIKKTDEGTYRCEGRILARGE-------INFKDIQVIVNVPPTIQARQN 802
Query: 237 -ETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
A+ G + L+C+ G + W +G +IE
Sbjct: 803 IVNATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIE 910
>ref|NM_000615.1| Homo sapiens neural cell adhesion molecule 1 (NCAM1), mRNA
Length = 2960
Score = 43.9 bits (102), Expect = 0.043
Identities = 62/276 (22%), Positives = 105/276 (37%), Gaps = 5/276 (1%)
Frame = +1
Query: 1 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
M K L+ + + +SL++D+ +SV E C + + D +
Sbjct: 202 MLQTKDLIWTLFFLGTAVSLQVDIVPSQGE-----ISVGESKFFLCQVAGDAKDKDISWF 366
Query: 61 YKNDSKTPISADRDSRIHQQNEH--LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLE 118
N K + R S + + L A ++D+G Y C+V +++ TV V +
Sbjct: 367 SPNGEKLTPNQQRISVVWNDDSSSTLTIYNANIDDAGIYKCVVTGEDGS-ESEATVNV-K 540
Query: 119 NDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQW-YKNCKPLLLDNVSF 177
L + T PQ D +VC VS P + W +K +L +V F
Sbjct: 541 IFQKLMFKNAPT-PQEFREGEDAVIVCDVVSSLP------PTIIWKHKGRDVILKKDVRF 699
Query: 178 FGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRN 236
+ + L +R + + G Y C RG+ I F I P I + +N
Sbjct: 700 IVLSNNYLQIRGIKKTDEGTYRCEGRILARGE-------INFKDIQVIVNVPPTIQARQN 858
Query: 237 -ETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
A+ G + L+C+ G + W +G +IE
Sbjct: 859 IVNATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIE 966
>gb|S71824.1|S71824 N-CAM=145 kda neural cell adhesion molecule [human, small cell lung
cancer cell line OS2-R, mRNA, 2960 nt]
Length = 2960
Score = 43.9 bits (102), Expect = 0.043
Identities = 62/276 (22%), Positives = 105/276 (37%), Gaps = 5/276 (1%)
Frame = +1
Query: 1 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
M K L+ + + +SL++D+ +SV E C + + D +
Sbjct: 202 MLQTKDLIWTLFFLGTAVSLQVDIVPSQGE-----ISVGESKFFLCQVAGDAKDKDISWF 366
Query: 61 YKNDSKTPISADRDSRIHQQNEH--LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLE 118
N K + R S + + L A ++D+G Y C+V +++ TV V +
Sbjct: 367 SPNGEKLTPNQQRISVVWNDDSSSTLTIYNANIDDAGIYKCVVTGEDGS-ESEATVNV-K 540
Query: 119 NDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQW-YKNCKPLLLDNVSF 177
L + T PQ D +VC VS P + W +K +L +V F
Sbjct: 541 IFQKLMFKNAPT-PQEFREGEDAVIVCDVVSSLP------PTIIWKHKGRDVILKKDVRF 699
Query: 178 FGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRN 236
+ + L +R + + G Y C RG+ I F I P I + +N
Sbjct: 700 IVLSNNYLQIRGIKKTDEGTYRCEGRILARGE-------INFKDIQVIVNVPPTIQARQN 858
Query: 237 -ETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
A+ G + L+C+ G + W +G +IE
Sbjct: 859 IVNATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIE 966
>emb|X16451.1|BTADCYC Bovine mRNA for calmoduline-independent adenylate cyclase
Length = 3574
Score = 43.9 bits (102), Expect = 0.043
Identities = 62/276 (22%), Positives = 106/276 (37%), Gaps = 5/276 (1%)
Frame = +2
Query: 1 MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIW 60
M K L+ + + +SL++D+ +SV E C + + D +
Sbjct: 350 MLQTKNLIWTLFFLGTAVSLQVDIVPSQGE-----ISVGESKFFLCQVAGDAKDKDISWF 514
Query: 61 YKNDSKTPISADRDSRIHQQNEH--LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLE 118
N K + R S + + L A ++D+G Y C+V + +++ TV V +
Sbjct: 515 SPNGEKLTPNQQRISVVWNDDSSSTLTIYNANIDDAGIYKCVV-TAEDGTESEATVNV-K 688
Query: 119 NDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQW-YKNCKPLLLDNVSF 177
L + T PQ D +VC VS P + W +K +L +V F
Sbjct: 689 IFQKLMFKNAPT-PQEFREGEDAVIVCDVVSSLP------PTIIWKHKGRDVILKKDVRF 847
Query: 178 FGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRN 236
+ + L +R + + G Y C RG+ I F I P + + ++
Sbjct: 848 IVLTNNYLQIRGIKKTDEGTYRCEGRILARGE-------INFKDIQVIVNVPPTVQARQS 1006
Query: 237 -ETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
A+ G + L+CN G V W +G +IE
Sbjct: 1007IVNATANLGQSVTLVCNAEGFPEPTVSWTKDGEQIE 1114
>ref|XM_080991.1| off-track, mRNA
Length = 4638
Score = 43.9 bits (102), Expect = 0.043
Identities = 72/345 (20%), Positives = 129/345 (36%), Gaps = 9/345 (2%)
Frame = +2
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLH 136
+H+QN L F D+G Y C ++ + + +LE L + Q T
Sbjct: 1889 LHKQNGTLSFASIIASDAGQYQCQLQLEAHA-PINSSPGILEVIEQLKFVPQPTSKNLEL 2065
Query: 137 IAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGD 196
A + C K + P+VQW ++ + L + L+ RNV EHRG+
Sbjct: 2066 DAVVAKVHC------KAQGTPTPQVQWVRDGENTTLPDHVEVDANGTLIFRNVNSEHRGN 2227
Query: 197 YICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQ 256
Y C ++ +G+ + +T P P IE + + C G
Sbjct: 2228 YTC-LATNSQGQINATVAINVVVT--------PKFSVPPVGPIETSEQGTVVMHCQAIGD 2380
Query: 257 FSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICV 316
+ W + + N+ E ++F+E+ TL I V+ + + C
Sbjct: 2381 PKPTIQWDKDLKYLSENNTD-RERFRFLEN----------GTLEIRNVQVE-DEGSYGCT 2524
Query: 317 VKNTNIFESAHVQLIYP------VPDFK---NYLIGGFIILTATIVCCVCIYKVFKVDIV 367
+ N+ + VQL+ P+ +L+ +++T T+ Y V V ++
Sbjct: 2525 IGNSAGLKREDVQLVVKTTGDGFAPEESGGDGFLVTRAVLITMTVALA---YIVLVVGLM 2695
Query: 368 LWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFK 412
LW R ++ +D T +A P G G S+ + + K
Sbjct: 2696 LWCRYRRQA-RKARLNDLSTKEAGGDQPDVAGNGKGSEQEPCLSK 2827
>gb|AF003131.1| Caenorhabditis elegans cosmid C09D1, complete sequence
Length = 53848
Score = 43.5 bits (101), Expect = 0.056
Identities = 53/225 (23%), Positives = 90/225 (39%), Gaps = 13/225 (5%)
Frame = +1
Query: 60 WYKNDSKTPISADRDSRIHQQNEH-----LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTV 114
W+K+D PI+ D +S I ++E L A+ ED G Y C N KT +
Sbjct: 38917 WFKDDK--PINID-NSHIFAKDEGSGHHTLTIKQARGEDVGVYTCKATNEAGEAKTTANM 39087
Query: 115 TVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDN 174
V E + Q P + LV + E PEV+W+K+ P+ +DN
Sbjct: 39088 AVQEEIEAPLF-VQGLKPYEVEQGKPAELVV------RVEGKPEPEVKWFKDGVPIAIDN 39246
Query: 175 VSFFGVKDK-----LLVRNVAEEHRGDYICRMSYTFRGKQYPVTRV-IQFITIDENKRD- 227
K + L++++ G Y C+ + GK V + I + ++ +
Sbjct: 39247 QHVIEKKGENGSHTLVIKDTNNADFGKYTCQAT-NKAGKDETVGELKIPKYSFEKQTAEE 39423
Query: 228 -RPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
+P+ + P ET + G + L C V + + + N +E
Sbjct: 39424 VKPLFIEPLKETFAVE-GDTVVLECKVNKESHPQIKFFKNDQPVE 39555
>gb|AF001286.1|AF001286 Mus musculus OCAM-GPI protein precursor mRNA, complete cds
Length = 4821
Score = 43.5 bits (101), Expect = 0.056
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Frame = +3
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
Y N+ T I +R + + N +L + D G Y C R + V+ N
Sbjct: 591 YHNEEVTTIPDNRFAVL--ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 764
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFF-- 178
P Q +F + +L C K + P + W++N K L+ +N +
Sbjct: 765 PPAIMMPQKSFNATAERGEEMTLTC------KASGSPDPTISWFRNGK-LIEENEKYILK 923
Query: 179 GVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNET 238
G +L VRN+ + G Y+C+ + G+ + F+ +P IL +NET
Sbjct: 924 GSNTELTVRNIINKDGGSYVCKAT-NKAGEDQKQAFLQVFV--------QPHILQLKNET 1076
Query: 239 IEADPGSMIQLICNVTGQFSDLVYWK 264
+ L+C G+ + WK
Sbjct: 1077--TSENGHVTLVCEAEGEPVPEITWK 1148
>gb|AC084594.1|CBRG42E21 Caenorhabditis briggsae cosmid G42E21, complete sequence
Length = 39130
Score = 43.5 bits (101), Expect = 0.056
Identities = 46/232 (19%), Positives = 84/232 (35%), Gaps = 16/232 (6%)
Frame = -2
Query: 55 GDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPA-KVEDSGYYYCIVRNSTYCLKTKVT 113
G TI W+ D + + + +++ H A + D+G Y C+V N +++
Sbjct: 21297 GSTIAWFNGDERIESAGRFELSSDKKSNHKLVCHAVQYNDAGKYRCVVTNKYGYAESECN 21118
Query: 114 VTVLENDPGLCYSTQATFPQRLHIAGDG-SLVCPYVSYFKDENNELPEVQWYKNCKPL-- 170
VTV + + S +T I G +L C K E PE+ W K+ + +
Sbjct: 21117 VTVEDITKFIAPSFSSTLSDSTAILGHNITLEC------KVEGFPTPEISWTKDGERIST 20956
Query: 171 --LLDNVSFFGVKDKLLVRNVAEEHRGDYIC----------RMSYTFRGKQYPVTRVIQF 218
+ + KL++ + G Y+C S K +
Sbjct: 20955 TRRIRQIQDENGNCKLIISKAESDDTGVYVCSATSVSGVDSTSSMVMIAKTTGTDSHLVI 20776
Query: 219 ITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
++K+++P + IE + L+ G+ V W +G EI
Sbjct: 20775 AQSIDDKQEKPRFIRAPPSLIEVNESGQFTLVAKAIGEPKPTVTWLKDGREI 20620
Score = 42.7 bits (99), Expect = 0.096
Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 15/247 (6%)
Frame = -2
Query: 39 NEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQ--NEHLWFVPAKVEDSGY 96
+E DI K + I W++N+++ S + N L + A EDSG
Sbjct: 23925 SESDILKLEVNIKANPAPEINWFRNEAEIEHSQRHRLQFDDGSGNYSLTIIDAYAEDSGE 23746
Query: 97 YYCIVRNSTYCLKTKVTVTV----------LENDPGLCYSTQATFPQRLHIAGDGSLVCP 146
Y C+ +N T V + ++ + Q P+ + D +LVC
Sbjct: 23745 YKCVAKNKIGKAHTVCCVRIEELLAKRSKKIDGSKAPRFRMQLPTPREVPQGSDLTLVCS 23566
Query: 147 YVSYFKDENNELPEVQWYKNCKPLLLDN--VSFFGVKDKLLVRNVAEEHRGDYICRMSYT 204
P ++W K+ +P+ + N V L + +E +G Y+C
Sbjct: 23565 V------SGTPHPNIRWTKDDQPIDMSNKQVRHENGVCTLHIIGARDEDQGRYVCEAENI 23404
Query: 205 FR-GKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYW 263
+ + V + + + D K P L P + G+ I L C VTG+ + W
Sbjct: 23403 HGVAQSFSVVEIKEAVDKDHIK---PKFLEPLVNCSTCE-GNEIVLECCVTGKPIPAITW 23236
Query: 264 KWNGSEI 270
+G ++
Sbjct: 23235 YKDGLKL 23215
>ref|NM_058889.1| immunoglobin-like protein
Length = 19929
Score = 43.5 bits (101), Expect = 0.056
Identities = 53/225 (23%), Positives = 90/225 (39%), Gaps = 13/225 (5%)
Frame = +1
Query: 60 WYKNDSKTPISADRDSRIHQQNEH-----LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTV 114
W+K+D PI+ D +S I ++E L A+ ED G Y C N KT +
Sbjct: 10573 WFKDDK--PINID-NSHIFAKDEGSGHHTLTIKQARGEDVGVYTCKATNEAGEAKTTANM 10743
Query: 115 TVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDN 174
V E + Q P + LV + E PEV+W+K+ P+ +DN
Sbjct: 10744 AVQEEIEAPLF-VQGLKPYEVEQGKPAELVV------RVEGKPEPEVKWFKDGVPIAIDN 10902
Query: 175 VSFFGVKDK-----LLVRNVAEEHRGDYICRMSYTFRGKQYPVTRV-IQFITIDENKRD- 227
K + L++++ G Y C+ + GK V + I + ++ +
Sbjct: 10903 QHVIEKKGENGSHTLVIKDTNNADFGKYTCQAT-NKAGKDETVGELKIPKYSFEKQTAEE 11079
Query: 228 -RPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
+P+ + P ET + G + L C V + + + N +E
Sbjct: 11080 VKPLFIEPLKETFAVE-GDTVVLECKVNKESHPQIKFFKNDQPVE 11211
Score = 38.1 bits (87), Expect = 2.4
Identities = 50/241 (20%), Positives = 90/241 (36%), Gaps = 18/241 (7%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEHLWFV-----------PAKVEDSGYYYCIVRNSTY 106
I WYK+D + +H+ H ++ P +V D+G Y C+ N
Sbjct: 1735 ITWYKDDVQ----------LHEDERHTFYSDEDGFFAMTIDPVQVTDTGRYTCMATNEYG 1884
Query: 107 CLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQ--WY 164
T VL+ +A P + D V F+ E PE + W
Sbjct: 1885 QASTSAFFRVLK------VEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWPEPELVWL 2046
Query: 165 KNCKPLLLDN---VSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITI 221
+ +PL + + + G KL +R+ + G Y ++ F + ++ F+
Sbjct: 2047 VDDQPLRPSHDFRLQYDGQTAKLEIRDAQPDDTGVYTVKIQNEFGSIE---SKAELFVQA 2217
Query: 222 DENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWND--PFLAE 279
D +K E +E D G ++ +TG + + W NG + ++ F++E
Sbjct: 2218 DPDKNHVAPEFQATIEYVECDEGEEVRFKSVITGDPNPEIIWFINGKPLSESEKVKFISE 2397
Query: 280 D 280
D
Sbjct: 2398 D 2400
>gb|AF129167.1|AF129167 Chlorocebus aethiops neural cell adhesion molecule L1 (L1CAM) mRNA,
complete cds
Length = 4023
Score = 43.5 bits (101), Expect = 0.056
Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 11/256 (4%)
Frame = +1
Query: 27 EYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQ-QNEHLW 85
++P + V + V E + P P I++ N I +D R+ QN +L+
Sbjct: 394 KWPKETVKPVEVEEGESVVLPCHPPPSAEPLRIYWMNSKILHIK--QDERVTMGQNGNLY 567
Query: 86 FVPAKVEDS-GYYYC---------IVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRL 135
F D+ Y C I++ L+ K T ++++ P L + T ++
Sbjct: 568 FANVLTSDNHSDYICHAHFPGTRTIIQKEPIDLRVKATNSMIDRKPRLLFPTNSSSHL-- 741
Query: 136 HIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRG 195
+A G P V E P ++W + P+ D V++ L + V EE G
Sbjct: 742 -VALQGQ---PLVLECIAEGFPTPTIKWLRPSGPMPADRVTYQNHNKTLQLLKVGEEDDG 909
Query: 196 DYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTG 255
+Y C + R ++T++ P L + PG +L C V G
Sbjct: 910 EYRCLAENSLGS-----ARHAYYVTVEA----APYWLHKPQSHLYG-PGETARLDCQVQG 1059
Query: 256 QFSDLVYWKWNGSEIE 271
+ V W+ NG +E
Sbjct: 1060RPQPEVTWRINGIPME 1107
>ref|NM_010954.1| Mus musculus neural cell adhesion molecule 2 (Ncam2), mRNA
Length = 3485
Score = 43.5 bits (101), Expect = 0.056
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Frame = +1
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
Y N+ T I +R + + N +L + D G Y C R + V+ N
Sbjct: 547 YHNEEVTTIPDNRFAVL--ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 720
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFF-- 178
P Q +F + +L C K + P + W++N K L+ +N +
Sbjct: 721 PPAIMMPQKSFNATAERGEEMTLTC------KASGSPDPTISWFRNGK-LIEENEKYILK 879
Query: 179 GVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNET 238
G +L VRN+ + G Y+C+ + G+ + F+ +P IL +NET
Sbjct: 880 GSNTELTVRNIINKDGGSYVCKAT-NKAGEDQKQAFLQVFV--------QPHILQLKNET 1032
Query: 239 IEADPGSMIQLICNVTGQFSDLVYWK 264
+ L+C G+ + WK
Sbjct: 1033--TSENGHVTLVCEAEGEPVPEITWK 1104
>gb|AF016619.1|AF016619 Mus musculus Rb-8 neural cell adhesion molecule short form
precursor (RNCAM) mRNA, complete cds
Length = 3485
Score = 43.5 bits (101), Expect = 0.056
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Frame = +1
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
Y N+ T I +R + + N +L + D G Y C R + V+ N
Sbjct: 547 YHNEEVTTIPDNRFAVL--ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 720
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFF-- 178
P Q +F + +L C K + P + W++N K L+ +N +
Sbjct: 721 PPAIMMPQKSFNATAERGEEMTLTC------KASGSPDPTISWFRNGK-LIEENEKYILK 879
Query: 179 GVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNET 238
G +L VRN+ + G Y+C+ + G+ + F+ +P IL +NET
Sbjct: 880 GSNTELTVRNIINKDGGSYVCKAT-NKAGEDQKQAFLQVFV--------QPHILQLKNET 1032
Query: 239 IEADPGSMIQLICNVTGQFSDLVYWK 264
+ L+C G+ + WK
Sbjct: 1033--TSENGHVTLVCEAEGEPVPEITWK 1104
>gb|AF337036.1|AF337036 Danio rerio roundabout3 (robo3) mRNA, complete cds
Length = 5384
Score = 43.5 bits (101), Expect = 0.056
Identities = 60/231 (25%), Positives = 92/231 (38%), Gaps = 17/231 (7%)
Frame = +1
Query: 57 TIIWYKNDSKTP-----ISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTK 111
TI W K + + P I AD R+ Q K ED G Y C+ NS K +
Sbjct: 1177 TIRWKKEEGELPRGRFEIRADNSLRLTQ---------VKAEDEGSYTCLSENSVG--KAE 1323
Query: 112 VTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLL 171
+ ++ + P Q R I+ G V + N P V W K +L
Sbjct: 1324 ASGSLQVHVP-----PQIVVRPRDQISAQGRTVTFLCG---TKGNPPPAVFWQKEGSQVL 1479
Query: 172 LD-----------NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFIT 220
L +VS G +L + +V E G YIC+ + + G +T+ + +
Sbjct: 1480 LFPSQPPSQSGRFSVSLSG---ELTITDVHSEDSGYYICQ-AISVAGSI--LTKALLEVE 1641
Query: 221 IDENKRDRPVILS-PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
+ R P+I P N+T+ PG+ QL C+V G + W+ +G I
Sbjct: 1642 STPSDRIPPIIRQGPANQTLA--PGTTAQLQCHVMGNPLPSIQWERHGQRI 1788
>ref|NM_078981.1| Drosophila melanogaster off-track (otk), mRNA
Length = 4640
Score = 43.5 bits (101), Expect = 0.056
Identities = 64/304 (21%), Positives = 114/304 (37%), Gaps = 9/304 (2%)
Frame = +2
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLH 136
+H+QN L F D+G Y C ++ + + +LE L + Q T
Sbjct: 1877 LHKQNGTLSFASIIASDAGQYQCQLQLEAHA-PINSSPGILEVIEQLKFVPQPTSKNLEL 2053
Query: 137 IAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGD 196
A + C K + P+VQW ++ + L + L+ RNV EHRG+
Sbjct: 2054 DAVVAKVHC------KAQGTPTPQVQWVRDGENTTLPDHVEVDANGTLIFRNVNSEHRGN 2215
Query: 197 YICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQ 256
Y C ++ +G+ + +T P P IE + + C G
Sbjct: 2216 YTC-LATNSQGQINATVAINVVVT--------PKFSVPPVGPIETSEQGTVVMHCQAIGD 2368
Query: 257 FSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICV 316
+ W + + N+ E ++F+E+ TL I V+ + + C
Sbjct: 2369 PKPTIQWDKDLKYLSENNTD-RERFRFLEN----------GTLEIRNVQVE-DEGSYGCT 2512
Query: 317 VKNTNIFESAHVQLIYP------VPDFK---NYLIGGFIILTATIVCCVCIYKVFKVDIV 367
+ N+ + VQL+ P+ +L+ +++T T+ Y V V ++
Sbjct: 2513 IGNSAGLKREDVQLVVKTTGDGFAPEESGGDGFLVTRAVLITMTVALA---YIVLVVGLM 2683
Query: 368 LWYR 371
LW R
Sbjct: 2684 LWCR 2695
>emb|X63453.1|DMDTRK D.melanogaster mRNA for gp160-Dtrk
Length = 4640
Score = 43.5 bits (101), Expect = 0.056
Identities = 64/304 (21%), Positives = 114/304 (37%), Gaps = 9/304 (2%)
Frame = +2
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLH 136
+H+QN L F D+G Y C ++ + + +LE L + Q T
Sbjct: 1877 LHKQNGTLSFASIIASDAGQYQCQLQLEAHA-PINSSPGILEVIEQLKFVPQPTSKNLEL 2053
Query: 137 IAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGD 196
A + C K + P+VQW ++ + L + L+ RNV EHRG+
Sbjct: 2054 DAVVAKVHC------KAQGTPTPQVQWVRDGENTTLPDHVEVDANGTLIFRNVNSEHRGN 2215
Query: 197 YICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQ 256
Y C ++ +G+ + +T P P IE + + C G
Sbjct: 2216 YTC-LATNSQGQINATVAINVVVT--------PKFSVPPVGPIETSEQGTVVMHCQAIGD 2368
Query: 257 FSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICV 316
+ W + + N+ E ++F+E+ TL I V+ + + C
Sbjct: 2369 PKPTIQWDKDLKYLSENNTD-RERFRFLEN----------GTLEIRNVQVE-DEGSYGCT 2512
Query: 317 VKNTNIFESAHVQLIYP------VPDFK---NYLIGGFIILTATIVCCVCIYKVFKVDIV 367
+ N+ + VQL+ P+ +L+ +++T T+ Y V V ++
Sbjct: 2513 IGNSAGLKREDVQLVVKTTGDGFAPEESGGDGFLVTRAVLITMTVALA---YIVLVVGLM 2683
Query: 368 LWYR 371
LW R
Sbjct: 2684 LWCR 2695
>gb|AF001287.1|AF001287 Mus musculus OCAM-TM protein precursor mRNA, complete cds
Length = 3488
Score = 43.5 bits (101), Expect = 0.056
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Frame = +3
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
Y N+ T I +R + + N +L + D G Y C R + V+ N
Sbjct: 591 YHNEEVTTIPDNRFAVL--ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 764
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFF-- 178
P Q +F + +L C K + P + W++N K L+ +N +
Sbjct: 765 PPAIMMPQKSFNATAERGEEMTLTC------KASGSPDPTISWFRNGK-LIEENEKYILK 923
Query: 179 GVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNET 238
G +L VRN+ + G Y+C+ + G+ + F+ +P IL +NET
Sbjct: 924 GSNTELTVRNIINKDGGSYVCKAT-NKAGEDQKQAFLQVFV--------QPHILQLKNET 1076
Query: 239 IEADPGSMIQLICNVTGQFSDLVYWK 264
+ L+C G+ + WK
Sbjct: 1077--TSENGHVTLVCEAEGEPVPEITWK 1148
>gb|AF304131.1|AF304131 Danio rerio transmembrane receptor Roundabout3 (robo3) mRNA, complete
cds
Length = 5067
Score = 43.5 bits (101), Expect = 0.056
Identities = 60/231 (25%), Positives = 92/231 (38%), Gaps = 17/231 (7%)
Frame = +2
Query: 57 TIIWYKNDSKTP-----ISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTK 111
TI W K + + P I AD R+ Q K ED G Y C+ NS K +
Sbjct: 1223 TIRWKKEEGELPRGRFEIRADNSLRLTQ---------VKAEDEGSYTCLSENSVG--KAE 1369
Query: 112 VTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLL 171
+ ++ + P Q R I+ G V + N P V W K +L
Sbjct: 1370 ASGSLQVHVP-----PQIVVRPRDQISAQGRTVTFLCG---TKGNPPPAVFWQKEGSQVL 1525
Query: 172 LD-----------NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFIT 220
L +VS G +L + +V E G YIC+ + + G +T+ + +
Sbjct: 1526 LFPSQPPSQSGRFSVSLSG---ELTITDVHSEDSGYYICQ-AISVAGSI--LTKALLEVE 1687
Query: 221 IDENKRDRPVILS-PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
+ R P+I P N+T+ PG+ QL C+V G + W+ +G I
Sbjct: 1688 STPSDRIPPIIRQGPANQTLA--PGTTAQLQCHVMGNPLPSIQWERDGQRI 1834
>gb|U33058.1|CEU33058 Caenorhabditis elegans UNC-89 (unc-89) gene, complete cds
Length = 46638
Score = 43.1 bits (100), Expect = 0.073
Identities = 53/225 (23%), Positives = 90/225 (39%), Gaps = 13/225 (5%)
Frame = +2
Query: 60 WYKNDSKTPISADRDSRIHQQNEH-----LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTV 114
W+K+D PI+ D +S I ++E L A+ ED G Y C N KT +
Sbjct: 33008 WFKDDK--PINID-NSHIFGKDEGSGHHTLTIKQARGEDVGVYTCKATNEAGEAKTTANM 33178
Query: 115 TVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDN 174
V E + Q P + LV + E PEV+W+K+ P+ +DN
Sbjct: 33179 AVQEEIEAPLF-VQGLKPYEVEQGKPAELVV------RVEGKPEPEVKWFKDGVPIAIDN 33337
Query: 175 VSFFGVKDK-----LLVRNVAEEHRGDYICRMSYTFRGKQYPVTRV-IQFITIDENKRD- 227
K + L++++ G Y C+ + GK V + I + ++ +
Sbjct: 33338 QHVIEKKGENGSHTLVIKDTNNADFGKYTCQAT-NKAGKDETVGELKIPKYSFEKQTAEE 33514
Query: 228 -RPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
+P+ + P ET + G + L C V + + + N +E
Sbjct: 33515 VKPLFIEPLKETFAVE-GDTVVLECKVNKESHPQIKFFKNDQPVE 33646
>ref|NM_017358.1| Rattus norvegicus immunoglobulin superfamily member (CDO), mRNA
Length = 4573
Score = 43.1 bits (100), Expect = 0.073
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 3/208 (1%)
Frame = +3
Query: 59 IWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTY--CLKTKVTVTV 116
+++ D + +S R++ HL DSG Y C+V N++ TV V
Sbjct: 783 VYWLKDGQDCLSGSNWRRLYS---HLATASIDPADSGNYSCVVGNNSSGDVKHVTYTVNV 953
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVS 176
LE+ ++ Q++ + C N P W+ N +P+ +
Sbjct: 954 LEH----ASISKGLHDQKVSLGATVRFTCEV------HGNPAPNRTWFHNAQPIRPSS-R 1100
Query: 177 FFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS-PR 235
L + V E G Y C M+ G R + I+++ RPVI++ P
Sbjct: 1101HLTEGSVLKITGVIMEDSGLYQC-MADNGIGFMQSTGR----LQIEQDSGQRPVIVTAPA 1265
Query: 236 NETIEADPGSMIQLICNVTGQFSDLVYW 263
N +E G + L CN TG+ +++W
Sbjct: 1266N--VEVTDGDFVTLSCNATGEPVPVIHW 1343
>gb|AF004840.1|AF004840 Rattus norvegicus CDO (cdo) mRNA, complete cds
Length = 4573
Score = 43.1 bits (100), Expect = 0.073
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 3/208 (1%)
Frame = +3
Query: 59 IWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTY--CLKTKVTVTV 116
+++ D + +S R++ HL DSG Y C+V N++ TV V
Sbjct: 783 VYWLKDGQDCLSGSNWRRLYS---HLATASIDPADSGNYSCVVGNNSSGDVKHVTYTVNV 953
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVS 176
LE+ ++ Q++ + C N P W+ N +P+ +
Sbjct: 954 LEH----ASISKGLHDQKVSLGATVRFTCEV------HGNPAPNRTWFHNAQPIRPSS-R 1100
Query: 177 FFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS-PR 235
L + V E G Y C M+ G R + I+++ RPVI++ P
Sbjct: 1101HLTEGSVLKITGVIMEDSGLYQC-MADNGIGFMQSTGR----LQIEQDSGQRPVIVTAPA 1265
Query: 236 NETIEADPGSMIQLICNVTGQFSDLVYW 263
N +E G + L CN TG+ +++W
Sbjct: 1266N--VEVTDGDFVTLSCNATGEPVPVIHW 1343
>gb|AC104703.1| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 185400
Score = 42.7 bits (99), Expect = 0.096
Identities = 48/178 (26%), Positives = 77/178 (42%), Gaps = 11/178 (6%)
Frame = +1
Query: 36 LSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSG 95
LS N +++ CP+ +G I + D K P++ + + Q+N L FV A EDSG
Sbjct: 149839 LSGNTVNLA-CPV-----YGKANITWTKDKK-PLNRELGVYV-QKNWTLRFVEATSEDSG 149994
Query: 96 YYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDEN 155
Y C V N+ C++ +V + + + PQ + +GSLV Y +
Sbjct: 149995 LYNCKVCNAWGCIQFDFSVQINDRTRS---APIIVVPQNQTVKVNGSLVMKCTVY----S 150153
Query: 156 NELPEVQWYK---------NCKPLLLDNVSFFGVKDK--LLVRNVAEEHRGDYICRMS 202
+ P V W + K + + N++F D L +RNV + G Y C S
Sbjct: 150154 DLHPTVSWKRVVLKNASLDGLKSVEIQNLNFTVTNDSVVLTLRNVTFDQEGWYTCLAS 150327
Score = 36.2 bits (82), Expect = 8.9
Identities = 42/207 (20%), Positives = 86/207 (41%), Gaps = 5/207 (2%)
Frame = +1
Query: 161 VQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFIT 220
+ W K+ KPL + + L E G Y C++ + Q+ + +
Sbjct: 149890 ITWTKDKKPLNRELGVYVQKNWTLRFVEATSEDSGLYNCKVCNAWGCIQFDFS-----VQ 150054
Query: 221 IDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAED 280
I++ R P+I+ P+N+T++ + GS++ + C V V WK + D + +
Sbjct: 150055 INDRTRSAPIIVVPQNQTVKVN-GSLV-MKCTVYSDLHPTVSWKRVVLKNASLDGLKSVE 150228
Query: 281 YQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNY 340
Q + T ++T N++ + +Y + +N S +++++ P+P + Y
Sbjct: 150229 IQNLNFTVTNDS-VVLTLRNVTFDQEGWYTCLASSGLGRSN--SSVYLRVVSPLPPLEIY 150399
Query: 341 LI-----GGFIILTATIVCCVCIYKVF 362
+ GF + TIV + F
Sbjct: 150400 ALLHAHPLGFTLAAITIVALFLLGSAF 150480
>dbj|AK057509.1|AK057509 Homo sapiens cDNA FLJ32947 fis, clone TESTI2007951, highly similar
to NEURAL CELL ADHESION MOLECULE, 140 KDA ISOFORM
PRECURSOR
Length = 3309
Score = 42.7 bits (99), Expect = 0.096
Identities = 54/227 (23%), Positives = 88/227 (37%), Gaps = 3/227 (1%)
Frame = +2
Query: 48 LTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYC 107
LTPN+ +++W + S T L A ++D+G Y C+V
Sbjct: 653 LTPNQQR-ISVVWNDDSSST----------------LTIYNANIDDAGIYKCVVTGEDGS 781
Query: 108 LKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQW-YKN 166
+++ TV V + L + T PQ D +VC VS P + W +K
Sbjct: 782 -ESEATVNV-KIFQKLMFKNAPT-PQEFREGEDAVIVCDVVSSLP------PTIIWKHKG 934
Query: 167 CKPLLLDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENK 225
+L +V F + + L +R + + G Y C RG+ I F I
Sbjct: 935 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE-------INFKDIQVIV 1093
Query: 226 RDRPVILSPRN-ETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
P I + +N A+ G + L+C+ G + W +G +IE
Sbjct: 1094NVPPTIQARQNIVNATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIE 1234
>gb|AF444783.1|AF444783 Anopheles gambiae Trex gene, complete cds
Length = 6629
Score = 42.7 bits (99), Expect = 0.096
Identities = 53/244 (21%), Positives = 104/244 (41%), Gaps = 7/244 (2%)
Frame = +2
Query: 317 VKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSG 376
V N N+ + P+ + L+ G + I+ + ++ VF+ ++ +W+
Sbjct: 3416 VINGNLTSRKTILSPQPIEGYIPLLVTGLFGFSLVIILTLVLF-VFRQEMRVWFHSKFGV 3592
Query: 377 FLPSKASD------GKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQF-GYKLFIY 429
L + +D K +DA+I Y S + FV + L +LE + YKL ++
Sbjct: 3593 RLFYRNADIDKNERDKLFDAFISYS--------SKDEAFVAEELAPMLENEDPSYKLCLH 3748
Query: 430 GRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIV 489
RD VG + + V+ SRR I++L + W E + A + L +++
Sbjct: 3749 YRDFPVGAYIADNILQAVESSRRTIMVLSENFIKSEWC--RFEFKSAHHQVLRDRRRRLI 3922
Query: 490 LLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPL 549
++ L ++ + PD I+ + + + W GD FW+ LR+ +P +
Sbjct: 3923 VILLGEVPQKDLDPD-IRLYLKTNTYLQW-GD---------KLFWEKLRFALPDVPNNQR 4069
Query: 550 SKHR 553
+H+
Sbjct: 4070 RQHQ 4081
>ref|XM_041415.1| Homo sapiens neural cell adhesion molecule 1 (NCAM1), mRNA
Length = 2826
Score = 42.7 bits (99), Expect = 0.096
Identities = 54/227 (23%), Positives = 88/227 (37%), Gaps = 3/227 (1%)
Frame = +1
Query: 48 LTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYC 107
LTPN+ +++W + S T L A ++D+G Y C+V
Sbjct: 361 LTPNQQR-ISVVWNDDSSST----------------LTIYNANIDDAGIYKCVVTGEDGS 489
Query: 108 LKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQW-YKN 166
+++ TV V + L + T PQ D +VC VS P + W +K
Sbjct: 490 -ESEATVNV-KIFQKLMFKNAPT-PQEFREGEDAVIVCDVVSSLP------PTIIWKHKG 642
Query: 167 CKPLLLDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENK 225
+L +V F + + L +R + + G Y C RG+ I F I
Sbjct: 643 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE-------INFKDIQVIV 801
Query: 226 RDRPVILSPRN-ETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
P I + +N A+ G + L+C+ G + W +G +IE
Sbjct: 802 NVPPTIQARQNIVNATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIE 942
>ref|XM_079233.1| Leukocyte-antigen-related-like, mRNA
Length = 7606
Score = 42.7 bits (99), Expect = 0.096
Identities = 52/222 (23%), Positives = 82/222 (36%), Gaps = 9/222 (4%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQN--EHLWFVPAKV-EDSGYYYCIVRNSTY-CLKTKV 112
+I+W KN K + R + + Q L P + D Y C+ N +
Sbjct: 313 SIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADA 492
Query: 113 TVTVLENDP---GLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKP 169
T+T+ E D G TQ + + + + C + N P + W KN
Sbjct: 493 TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG------NPTPNIYWIKNQTK 654
Query: 170 LLLDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDR 228
+ + N + +KD L + N EE +G Y C + + T + + +R
Sbjct: 655 VDMSNPR-YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV-----RRVP 816
Query: 229 PVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKW-NGSE 269
P P E GS + L C G S + + KW GSE
Sbjct: 817 PTFSRPPETISEVMLGSNLNLSCIAVG--SPMPHVKWMKGSE 936
>ref|NM_078880.1| Drosophila melanogaster Leukocyte-antigen-related-like (Lar), mRNA
Length = 7606
Score = 42.7 bits (99), Expect = 0.096
Identities = 52/222 (23%), Positives = 82/222 (36%), Gaps = 9/222 (4%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQN--EHLWFVPAKV-EDSGYYYCIVRNSTY-CLKTKV 112
+I+W KN K + R + + Q L P + D Y C+ N +
Sbjct: 313 SIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADA 492
Query: 113 TVTVLENDP---GLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKP 169
T+T+ E D G TQ + + + + C + N P + W KN
Sbjct: 493 TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG------NPTPNIYWIKNQTK 654
Query: 170 LLLDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDR 228
+ + N + +KD L + N EE +G Y C + + T + + +R
Sbjct: 655 VDMSNPR-YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV-----RRVP 816
Query: 229 PVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKW-NGSE 269
P P E GS + L C G S + + KW GSE
Sbjct: 817 PTFSRPPETISEVMLGSNLNLSCIAVG--SPMPHVKWMKGSE 936
>gb|M27700.1|DROLARM D.melanogaster protein tyrosine phosphatase (DLAR) mRNA, complete
cds
Length = 7606
Score = 42.7 bits (99), Expect = 0.096
Identities = 52/222 (23%), Positives = 82/222 (36%), Gaps = 9/222 (4%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQN--EHLWFVPAKV-EDSGYYYCIVRNSTY-CLKTKV 112
+I+W KN K + R + + Q L P + D Y C+ N +
Sbjct: 313 SIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADA 492
Query: 113 TVTVLENDP---GLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKP 169
T+T+ E D G TQ + + + + C + N P + W KN
Sbjct: 493 TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG------NPTPNIYWIKNQTK 654
Query: 170 LLLDNVSFFGVKDKLL-VRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDR 228
+ + N + +KD L + N EE +G Y C + + T + + +R
Sbjct: 655 VDMSNPR-YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV-----RRVP 816
Query: 229 PVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKW-NGSE 269
P P E GS + L C G S + + KW GSE
Sbjct: 817 PTFSRPPETISEVMLGSNLNLSCIAVG--SPMPHVKWMKGSE 936
>emb|X90569.1|HSTITINN2 H.sapiens mRNA for titin protein (clone hsk1-hsk19)
Length = 23887
Score = 42.7 bits (99), Expect = 0.096
Identities = 39/146 (26%), Positives = 59/146 (39%), Gaps = 3/146 (2%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
T+ W K+ K P D + L AK++DSG Y C N TVTV
Sbjct: 1015 TVTWSKDGQKLPPGKDYKICFEDKIATLEIPLAKLKDSGTYVCTASNEAGSSSCSATVTV 1194
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDN-- 174
E P + P L + G+ + + + K + + + +V W+KN K L N
Sbjct: 1195 RE-PPSF---VKKVDPSYLMLPGESARL-----HCKLKGSPVIQVTWFKNNKELSESNTV 1347
Query: 175 -VSFFGVKDKLLVRNVAEEHRGDYIC 199
+ F + L + +V E G Y C
Sbjct: 1348 RMYFVNSEAILDITDVKVEDSGSYSC 1425
Score = 42.0 bits (97), Expect = 0.16
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 8/222 (3%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQN-EHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVT 115
+++W+K+ + +D + +N L F + ++G Y C ++N + T++
Sbjct: 12559 SVVWFKDKGEIVRESDNIWISYSENIATLQFSRVEPANAGKYTCQIKNDAGMQECFATLS 12738
Query: 116 VLENDPGLCYSTQATFPQRLHI-AGDG-SLVCPYVSYFKDENNELPEV--QWYKNCKPLL 171
VLE +T P+ + + GD +L C PE+ +W+K+ K L
Sbjct: 12739 VLEP------ATIVEKPESIKVTTGDTCTLECTVAG--------TPELSTKWFKDGKELT 12876
Query: 172 LDN---VSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDR 228
DN +SFF L + NVA G Y + Q PV + ++ + R
Sbjct: 12877 SDNKYKISFFNKVSGLKIINVAPSDSGVYSFEV-------QNPVGKDSCTASLQVSDRTV 13035
Query: 229 PVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
P + + + GS + + C V G V W G+EI
Sbjct: 13036 PPSFTRKLKETNGLSGSSVVMECKVYGSPPISVSWFHEGNEI 13161
Score = 40.4 bits (93), Expect = 0.47
Identities = 47/220 (21%), Positives = 82/220 (36%), Gaps = 5/220 (2%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
++ W KN S + +++ L + VED+G Y C + N++ + +
Sbjct: 13687 SVTWKKNGINVTPSQRCNITTTEKSPILEIPSSTVEDAGQYNCYIENASGKDSCSAQILI 13866
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPE--VQWYK---NCKPLL 171
LE Y + P ++ + SL C PE V WYK +P
Sbjct: 13867 LEPP----YFVKQLEPVKVSVGDSASLQCQLAG--------TPEIGVSWYKGDTKLRPTT 14010
Query: 172 LDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVI 231
+ F L+ V G+YIC+ + G+ T F+T+ E K P
Sbjct: 14011 TYKMHFRNNVATLVFNQVDINDSGEYICKAENSV-GEVSAST----FLTVQEQK--LPPS 14169
Query: 232 LSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIE 271
S + ++ G + C ++G V W +G ++
Sbjct: 14170 FSRQLRDVQETVGLPVVFDCAISGSEPISVSWYKDGKPLK 14289
Score = 36.6 bits (83), Expect = 6.8
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 3/149 (2%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
T+ WYKN+ + +++ + L A + D+G Y C V N ++ +
Sbjct: 14833 TVAWYKNNIEIQPTSNCEITFKNNTLVLQVRKAGMNDAGLYTCKVSNDAGSALCTSSIVI 15012
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYK---NCKPLLLD 173
E + T P + L C + +E +QW K KP
Sbjct: 15013 KEPKKPPVFDQHLT-PVTVSEGEYVQLSCHV------QGSEPIRIQWLKAGREIKPSDRC 15171
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMS 202
+ SF L +R+VA+ GDY+C+ S
Sbjct: 15172 SFSFASGTAVLELRDVAKADSGDYVCKAS 15258
Score = 36.2 bits (82), Expect = 8.9
Identities = 51/224 (22%), Positives = 82/224 (35%), Gaps = 10/224 (4%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
T+ WYK D+K + + + L F + DSG Y C NS +K +
Sbjct: 8320 TVSWYKGDTKLRPTPEYRTYFTNNVATLVFNKVNINDSGEYTCKAENSIGTASSKTVFRI 8499
Query: 117 LENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELP-EVQWYK---------N 166
E ++ Q ++ + +L C N P +V WY+ N
Sbjct: 8500 QERQLPPSFARQLKDIEQT-VGLPVTLTCRL-------NGSAPIQVCWYRDGVLLRDHEN 8655
Query: 167 CKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKR 226
+ +DNV+ K+L +++ H G Y C S G R +T E K+
Sbjct: 8656 LQTSFVDNVATL----KILQTDLS--HSGQYSCSASNPL-GTASSSAR----LTAREPKK 8802
Query: 227 DRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEI 270
+ P +I+ G C+VTG + W + EI
Sbjct: 8803 SPFFDIKP--VSIDVIAGESADFECHVTGAQPMRITWSKDNKEI 8928
Score = 36.2 bits (82), Expect = 8.9
Identities = 51/231 (22%), Positives = 77/231 (33%), Gaps = 7/231 (3%)
Frame = +1
Query: 57 TIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
TI W+K++ + A R + L AK DSG Y C + N +K T+ V
Sbjct: 4387 TIKWFKDNKELHSGAARSVWKDDTSTSLELFAAKATDSGTYICQLSNDVGTATSKATLFV 4566
Query: 117 LE-------NDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKP 169
E P L + I G + VS++ D NE+ +Q +
Sbjct: 4567 KEPPQFIKKPSPVLVLRNGQSTTFECQITGTPKI---RVSWYLD-GNEITAIQKH----- 4719
Query: 170 LLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRP 229
+SF + E+ G Y+C + E K P
Sbjct: 4720 ----GISFIDGLATFQISGARVENSGTYVCEARNDAGTASCSI----------ELKVKEP 4857
Query: 230 VILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAED 280
+ +E S ++L C VTG V W N EI + + D
Sbjct: 4858 PTFIRELKPVEVVKYSDVELECEVTGTPPFEVTWLKNNREIRSSKKYTLTD 5010
>gb|AE003536.2|AE003536 Drosophila melanogaster genomic scaffold 142000013386050 section 32 of
54, complete sequence
Length = 341319
Score = 42.7 bits (99), Expect = 0.096
Identities = 48/178 (26%), Positives = 77/178 (42%), Gaps = 11/178 (6%)
Frame = +3
Query: 36 LSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSG 95
LS N +++ CP+ +G I + D K P++ + + Q+N L FV A EDSG
Sbjct: 331875 LSGNTVNLA-CPV-----YGKANITWTKDKK-PLNRELGVYV-QKNWTLRFVEATSEDSG 332030
Query: 96 YYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDEN 155
Y C V N+ C++ +V + + + PQ + +GSLV Y +
Sbjct: 332031 LYNCKVCNAWGCIQFDFSVQINDRTRS---APIIVVPQNQTVKVNGSLVMKCTVY----S 332189
Query: 156 NELPEVQWYK---------NCKPLLLDNVSFFGVKDK--LLVRNVAEEHRGDYICRMS 202
+ P V W + K + + N++F D L +RNV + G Y C S
Sbjct: 332190 DLHPTVSWKRVVLKNASLDGLKSVEIQNLNFTVTNDSVVLTLRNVTFDQEGWYTCLAS 332363
Score = 36.2 bits (82), Expect = 8.9
Identities = 42/207 (20%), Positives = 86/207 (41%), Gaps = 5/207 (2%)
Frame = +3
Query: 161 VQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFIT 220
+ W K+ KPL + + L E G Y C++ + Q+ + +
Sbjct: 331926 ITWTKDKKPLNRELGVYVQKNWTLRFVEATSEDSGLYNCKVCNAWGCIQFDFS-----VQ 332090
Query: 221 IDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAED 280
I++ R P+I+ P+N+T++ + GS++ + C V V WK + D + +
Sbjct: 332091 INDRTRSAPIIVVPQNQTVKVN-GSLV-MKCTVYSDLHPTVSWKRVVLKNASLDGLKSVE 332264
Query: 281 YQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNY 340
Q + T ++T N++ + +Y + +N S +++++ P+P + Y
Sbjct: 332265 IQNLNFTVTNDS-VVLTLRNVTFDQEGWYTCLASSGLGRSN--SSVYLRVVSPLPPLEIY 332435
Query: 341 LI-----GGFIILTATIVCCVCIYKVF 362
+ GF + TIV + F
Sbjct: 332436 ALLHAHPLGFTLAAITIVALFLLGSAF 332516
>ref|XM_090120.1| Homo sapiens similar to unnamed protein product (LOC160211), mRNA
Length = 2757
Score = 42.7 bits (99), Expect = 0.096
Identities = 65/264 (24%), Positives = 102/264 (38%), Gaps = 27/264 (10%)
Frame = +1
Query: 38 VNEIDIRKCPLT-PNKMHGDT---IIWYKNDSKTPISADRDS-------------RIHQQ 80
VN++ + P+T ++ GD + W K D + P ++ S R +
Sbjct: 1951 VNQVVLADAPVTFLCEVKGDPPPRLRWRKEDGELPTGREKGSVAVANPAWGGEWSRYEIR 2130
Query: 81 NEH-LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAG 139
++H LW ED G Y C+ NS + +++V P L T PQ +A
Sbjct: 2131 SDHSLWIGHVSAEDEGTYTCVAENSVGRAEASGSLSV-HVPPQL-----VTQPQD-QMAA 2289
Query: 140 DGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVR-----NVAEEHR 194
G V + + N P + W K +LL + V N+ R
Sbjct: 2290 PGESVA---FQCETKGNPPPAIFWQKEGSQVLLFPSQSLQPTGRFSVSPRGQLNITAVQR 2460
Query: 195 GD---YICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS-PRNETIEADPGSMIQLI 250
GD Y+C+ I+ ++D PVIL P N+T+ GS + L
Sbjct: 2461 GDAGYYVCQAVSVAGSILAKALLEIKGASLDGLP---PVILQGPANQTLVL--GSSVWLP 2625
Query: 251 CNVTGQFSDLVYWKWNGSEIEWND 274
C VTG V WK +G ++ +D
Sbjct: 2626 CRVTGNPQPSVRWKKDGQWLQGDD 2697
>gb|AC010573.3| Drosophila melanogaster 3L BAC RPCI98-2M13 (Roswell Park Cancer
Institute Drosophila BAC Library) complete sequence
Length = 181921
Score = 42.7 bits (99), Expect = 0.096
Identities = 48/178 (26%), Positives = 77/178 (42%), Gaps = 11/178 (6%)
Frame = +3
Query: 36 LSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSG 95
LS N +++ CP+ +G I + D K P++ + + Q+N L FV A EDSG
Sbjct: 8019 LSGNTVNLA-CPV-----YGKANITWTKDKK-PLNRELGVYV-QKNWTLRFVEATSEDSG 8174
Query: 96 YYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDEN 155
Y C V N+ C++ +V + + + PQ + +GSLV Y +
Sbjct: 8175 LYNCKVCNAWGCIQFDFSVQINDRTRS---APIIVVPQNQTVKVNGSLVMKCTVY----S 8333
Query: 156 NELPEVQWYK---------NCKPLLLDNVSFFGVKDK--LLVRNVAEEHRGDYICRMS 202
+ P V W + K + + N++F D L +RNV + G Y C S
Sbjct: 8334 DLHPTVSWKRVVLKNASLDGLKSVEIQNLNFTVTNDSVVLTLRNVTFDQEGWYTCLAS 8507
Score = 36.2 bits (82), Expect = 8.9
Identities = 42/207 (20%), Positives = 86/207 (41%), Gaps = 5/207 (2%)
Frame = +3
Query: 161 VQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFIT 220
+ W K+ KPL + + L E G Y C++ + Q+ + +
Sbjct: 8070 ITWTKDKKPLNRELGVYVQKNWTLRFVEATSEDSGLYNCKVCNAWGCIQFDFS-----VQ 8234
Query: 221 IDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAED 280
I++ R P+I+ P+N+T++ + GS++ + C V V WK + D + +
Sbjct: 8235 INDRTRSAPIIVVPQNQTVKVN-GSLV-MKCTVYSDLHPTVSWKRVVLKNASLDGLKSVE 8408
Query: 281 YQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNY 340
Q + T ++T N++ + +Y + +N S +++++ P+P + Y
Sbjct: 8409 IQNLNFTVTNDS-VVLTLRNVTFDQEGWYTCLASSGLGRSN--SSVYLRVVSPLPPLEIY 8579
Query: 341 LI-----GGFIILTATIVCCVCIYKVF 362
+ GF + TIV + F
Sbjct: 8580 ALLHAHPLGFTLAAITIVALFLLGSAF 8660
>emb|AJ001057.1|HSC7NRCAM Homo sapiens mRNA for NrCAM protein
Length = 3900
Score = 42.4 bits (98), Expect = 0.12
Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 5/211 (2%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEH-LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
I W K D P ++ +++ E L + DSG Y CI +N+ + ++V V
Sbjct: 889 IYWAKEDGMLP----KNRTVYKNFEKTLQIIHVSEADSGNYQCIAKNALGAIHHTISVRV 1056
Query: 117 LENDPGLCYSTQATFPQRLHIA--GDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL-- 172
+ T PQ L ++ DG+L+C + N P + W N P+ +
Sbjct: 1057 KAAPYWI------TAPQNLVLSPGEDGTLIC------RANGNPKPRISWLTNGVPIEIAP 1200
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
D+ S D ++ NV E Y C S +Y F+ + + P IL
Sbjct: 1201 DDPSRKIDGDTIIFSNVQERSSAVYQCNAS-----NEYGYLLANAFVNV---LAEPPRIL 1356
Query: 233 SPRNETIEADPGSMIQLICNVTGQFSDLVYW 263
+P N + L C G + W
Sbjct: 1357 TPANTLYQVIANRPALLDCAFFGSPLPTIQW 1449
>ref|XM_081958.1| Poly-glutamine tract binding protein 1, mRNA
Length = 900
Score = 42.4 bits (98), Expect = 0.12
Identities = 61/266 (22%), Positives = 105/266 (38%), Gaps = 9/266 (3%)
Frame = +1
Query: 75 SRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQR 134
S I E L P D+G Y C +NS + ++ P + + P R
Sbjct: 1 SEIASLQETLQLRPVGRRDAGLYTCQAQNSVGTSEQLSVQLDVKYPPKII----SAGPDR 168
Query: 135 LHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFF---GVKDKLLVRNVAE 191
L A L P + N LP +W + + + S + G + +L++ NV
Sbjct: 169 LTTA---PLFSPAAFECLADGNPLPSFKWVQR-----MAHGSKYVERGSESRLVIDNVTY 324
Query: 192 EHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPG---SMIQ 248
E++G+Y CR + G++ + +++ + + L P T+ G S+
Sbjct: 325 EYQGEYECRATSYINGQER--VAISDPVSLQVVGAPQVLRLHPSLHTVSVKRGEAASLTM 498
Query: 249 LICNVTGQFSDLVYWKWNGSEIEWN---DPFLAEDYQFVEHPSTKRKYTLITTLNISEVK 305
++C V W+W +E D F A+D Q P T R+ ++TL+I
Sbjct: 499 VVC--ADPRPQRVAWEWGSLRLEAGSGIDRFRADDMQ----PDT-REDCYLSTLHILHAD 657
Query: 306 SQFYRYPFICVVKNTNIFESAHVQLI 331
R P+ VV+N + + LI
Sbjct: 658 EHDSR-PYYLVVENERGTDRHAIHLI 732
>gb|AF337034.1|AF337034 Danio rerio roundabout1 (robo1) mRNA, partial cds
Length = 1129
Score = 42.4 bits (98), Expect = 0.12
Identities = 53/257 (20%), Positives = 99/257 (37%), Gaps = 6/257 (2%)
Frame = +2
Query: 19 SLEIDVCTE--YPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSR 76
SLE+ + + N + + ++ E + +C P + H + I +K D DRD R
Sbjct: 218 SLEVAILRDDFRQNPVDVMVAAGEPAVMECQ--PPRGHPEPTISWKKDGVN--IDDRDER 385
Query: 77 IHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVT-VTVLENDPGLCYSTQATFPQRL 135
I + L + D+G Y C+ N ++++ +TVLE P L
Sbjct: 386 ITIRGGKLMITNTRKTDAGKYVCVGTNMMGERESEIAELTVLER------------PSFL 529
Query: 136 HIAGDGSLVCPYVSYFKDE--NNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEH 193
S++ F+ E + +P ++W K L + L ++ +
Sbjct: 530 RKPSSQSVLVDQSVEFRCEAQGDPVPTIRWRKEDGELPKGRYEIW-EDHTLKLKRLTSGD 706
Query: 194 RGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPV-ILSPRNETIEADPGSMIQLICN 252
G Y C+ + T + +++ PV ++ PRN+ A G + C
Sbjct: 707 AGTYTCQAENMMGKTEASATLTVHVVSVP------PVFVVRPRNQV--AGMGRTVTFQCE 862
Query: 253 VTGQFSDLVYWKWNGSE 269
TG ++W+ GS+
Sbjct: 863 ATGSPQPAIFWQKEGSQ 913
>ref|XM_009705.5| Homo sapiens neural cell adhesion molecule 2 (NCAM2), mRNA
Length = 4597
Score = 42.4 bits (98), Expect = 0.12
Identities = 46/206 (22%), Positives = 81/206 (38%), Gaps = 2/206 (0%)
Frame = +2
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
Y N+ T IS +R + + N +L + D G Y C R + V+ N
Sbjct: 395 YHNEEVTTISDNRFAML--ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 568
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFF-- 178
P Q +F + + C + + P + W++N K L+ +N +
Sbjct: 569 PPAISMPQKSFNATAERGEEMTFSC------RASGSPEPAISWFRNGK-LIEENEKYILK 727
Query: 179 GVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNET 238
G +L VRN+ G Y+CR + G+ + F+ +P I+ +NET
Sbjct: 728 GSNTELTVRNIINSDGGPYVCRAT-NKAGEDEKQAFLQVFV--------QPHIIQLKNET 880
Query: 239 IEADPGSMIQLICNVTGQFSDLVYWK 264
+ + L+C+ G+ + WK
Sbjct: 881 TYEN--GQVTLVCDAEGEPIPEITWK 952
>emb|X14877.1|GGF11 Gallus gallus mRNA for neural cell recognition molecule F11
Length = 4619
Score = 42.4 bits (98), Expect = 0.12
Identities = 52/214 (24%), Positives = 84/214 (38%), Gaps = 6/214 (2%)
Frame = +3
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNS--TYCLKTKVTVTVL 117
W N+ I+ DR + Q N +L+ + D G Y C V + T + +K +
Sbjct: 786 WLLNEFPVFIALDRRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIP 965
Query: 118 ENDPGLCYST--QATFPQRLHIAGDG-SLVCPYVSYFKDENNELPEVQWYKNCKPL-LLD 173
+ D Y + F + G +L C + N +PE++W K +P+
Sbjct: 966 QADRAKVYPADIKVKFKDTYALLGQNVTLECFALG------NPVPELRWSKYLEPMPATA 1127
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
+S G K+ N+ E G Y C + ++GK RV + P +
Sbjct: 1128EISMSGAVLKIF--NIQYEDEGLYECE-AENYKGKDKHQARVY--------VQASPEWVE 1274
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNG 267
N+T E D GS + C TG+ + W NG
Sbjct: 1275HINDT-EKDIGSDLYWPCVATGKPIPTIRWLKNG 1373
>emb|Y00813.1|GGCONTAC Chicken mRNA for contactin
Length = 4991
Score = 42.4 bits (98), Expect = 0.12
Identities = 52/214 (24%), Positives = 84/214 (38%), Gaps = 6/214 (2%)
Frame = +3
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNS--TYCLKTKVTVTVL 117
W N+ I+ DR + Q N +L+ + D G Y C V + T + +K +
Sbjct: 528 WLLNEFPVFIALDRRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIP 707
Query: 118 ENDPGLCYST--QATFPQRLHIAGDG-SLVCPYVSYFKDENNELPEVQWYKNCKPL-LLD 173
+ D Y + F + G +L C + N +PE++W K +P+
Sbjct: 708 QADRAKVYPADIKVKFKDTYALLGQNVTLECFALG------NPVPELRWSKYLEPMPATA 869
Query: 174 NVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILS 233
+S G K+ N+ E G Y C + ++GK RV + P +
Sbjct: 870 EISMSGAVLKIF--NIQYEDEGLYECE-AENYKGKDKHQARVY--------VQASPEWVE 1016
Query: 234 PRNETIEADPGSMIQLICNVTGQFSDLVYWKWNG 267
N+T E D GS + C TG+ + W NG
Sbjct: 1017HINDT-EKDIGSDLYWPCVATGKPIPTIRWLKNG 1115
>gb|AF167341.1|F167333S09 Homo sapiens membrane interleukin 1 receptor accessory protein
(IL1RAP) gene, exons 10 and 11
Length = 2102
Score = 42.4 bits (98), Expect = 0.12
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +2
Query: 384 DGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVG 436
DGK YD Y+ Y + E + FV L VLE +FGYKL I+ RD G
Sbjct: 1646 DGKEYDIYVSYARNAEE------EEFVLLTLRGVLENEFGYKLCIFDRDSLPG 1786
>ref|XM_027222.2| Homo sapiens neuronal cell adhesion molecule (NRCAM), mRNA
Length = 3900
Score = 42.0 bits (97), Expect = 0.16
Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 5/211 (2%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEH-LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
I W K D P ++ +++ E L + DSG Y CI +N+ + ++V V
Sbjct: 889 IYWAKEDGMLP----KNRTVYKNFEKTLQIIHVSEADSGNYQCIAKNALGAIHHTISVRV 1056
Query: 117 LENDPGLCYSTQATFPQRLHIA--GDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL-- 172
+ T PQ L ++ DG+L+C + N P + W N P+ +
Sbjct: 1057 KAAPYWI------TAPQNLVLSPGEDGTLIC------RANGNPKPRISWLTNGVPIEIAP 1200
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
D+ S D ++ NV E Y C S +Y F+ + + P IL
Sbjct: 1201 DDPSRKIDGDTIIFSNVQERSSAVYQCNAS-----NEYGYLLANAFVNV---LAEPPRIL 1356
Query: 233 SPRNETIEADPGSMIQLICNVTGQFSDLVYW 263
+P N + L C G + W
Sbjct: 1357 TPANTLYQVIANRPALLDCAFFGSPLPTIEW 1449
>gb|AC091227.2| Drosophila melanogaster 3L BAC RP98-17F24 (Roswell Park Cancer
Institute Drosophila BAC Library) complete sequence
Length = 163512
Score = 42.0 bits (97), Expect = 0.16
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 10/232 (4%)
Frame = +2
Query: 321 NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVF--KVDIVLWYRDSCSGFL 378
N + ++I P +Y+ ILTA I +CI VF + ++ +W L
Sbjct: 15347 NASNATSTKMILNQPPKLDYIPILVAILTAFIFVMICISLVFIFRQEMRVWCHSRFGVRL 15526
Query: 379 -------PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE-GQFGYKLFIYG 430
K K +DA++ Y S + FV + L +LE G+ YKL ++
Sbjct: 15527 FYNAQKDVDKNEREKLFDAFVSYS--------SKDELFVNEELAPMLEMGEHRYKLCLHQ 15682
Query: 431 RDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL 490
RD VG E + + SRR I+++ + W E + A + L ++++
Sbjct: 15683 RDFPVGGYLPETIVQAIDSSRRTIMVVSENFIKSEWC--RFEFKSAHQSVLRDRRRRLIV 15856
Query: 491 LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ L ++ E PD ++K + + W GD FW+ LR+ +P
Sbjct: 15857 IVLGEVPQKELDPDLRLYLK-TNTYLQW-GD---------KLFWQKLRFALP 15979
>gb|AF247764.1|AF247764 Drosophila melanogaster Toll-8 mRNA, complete cds
Length = 4041
Score = 42.0 bits (97), Expect = 0.16
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 10/232 (4%)
Frame = +1
Query: 321 NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVF--KVDIVLWYRDSCSGFL 378
N + ++I P +Y+ ILTA I +CI VF + ++ +W L
Sbjct: 2998 NASNATSTKMILNQPPKLDYIPILVAILTAFIFVMICISLVFIFRQEMRVWCHSRFGVRL 3177
Query: 379 -------PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE-GQFGYKLFIYG 430
K K +DA++ Y S + FV + L +LE G+ YKL ++
Sbjct: 3178 FYNAQKDVDKNEREKLFDAFVSYS--------SKDELFVNEELAPMLEMGEHRYKLCLHQ 3333
Query: 431 RDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL 490
RD VG E + + SRR I+++ + W E + A + L ++++
Sbjct: 3334 RDFPVGGYLPETIVQAIDSSRRTIMVVSENFIKSEWC--RFEFKSAHQSVLRDRRRRLIV 3507
Query: 491 LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ L ++ E PD ++K + + W GD FW+ LR+ +P
Sbjct: 3508 IVLGEVPQKELDPDLRLYLK-TNTYLQW-GD---------KLFWQKLRFALP 3630
>gb|AE003531.2|AE003531 Drosophila melanogaster genomic scaffold 142000013386050 section 37 of
54, complete sequence
Length = 274351
Score = 42.0 bits (97), Expect = 0.16
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 10/232 (4%)
Frame = +3
Query: 321 NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVF--KVDIVLWYRDSCSGFL 378
N + ++I P +Y+ ILTA I +CI VF + ++ +W L
Sbjct: 21561 NASNATSTKMILNQPPKLDYIPILVAILTAFIFVMICISLVFIFRQEMRVWCHSRFGVRL 21740
Query: 379 -------PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE-GQFGYKLFIYG 430
K K +DA++ Y S + FV + L +LE G+ YKL ++
Sbjct: 21741 FYNAQKDVDKNEREKLFDAFVSYS--------SKDELFVNEELAPMLEMGEHRYKLCLHQ 21896
Query: 431 RDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL 490
RD VG E + + SRR I+++ + W E + A + L ++++
Sbjct: 21897 RDFPVGGYLPETIVQAIDSSRRTIMVVSENFIKSEWC--RFEFKSAHQSVLRDRRRRLIV 22070
Query: 491 LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ L ++ E PD ++K + + W GD FW+ LR+ +P
Sbjct: 22071 IVLGEVPQKELDPDLRLYLK-TNTYLQW-GD---------KLFWQKLRFALP 22193
>gb|U55258.1|HSU55258 Human hBRAVO/Nr-CAM precursor (hBRAVO/Nr-CAM) gene, complete cds
Length = 4134
Score = 42.0 bits (97), Expect = 0.16
Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 5/211 (2%)
Frame = +1
Query: 58 IIWYKNDSKTPISADRDSRIHQQNEH-LWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTV 116
I W K D P ++ +++ E L + DSG Y CI +N+ + ++V V
Sbjct: 1018 IYWAKEDGMLP----KNRTVYKNFEKTLQIIHVSEADSGNYQCIAKNALGAIHHTISVRV 1185
Query: 117 LENDPGLCYSTQATFPQRLHIA--GDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLL-- 172
+ T PQ L ++ DG+L+C + N P + W N P+ +
Sbjct: 1186 KAAPYWI------TAPQNLVLSPGEDGTLIC------RANGNPKPRISWLTNGVPIEIAP 1329
Query: 173 DNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVIL 232
D+ S D ++ NV E Y C S +Y F+ + + P IL
Sbjct: 1330 DDPSRKIDGDTIIFSNVQERSSAVYQCNAS-----NEYGYLLANAFVNV---LAEPPRIL 1485
Query: 233 SPRNETIEADPGSMIQLICNVTGQFSDLVYW 263
+P N + L C G + W
Sbjct: 1486 TPANTLYQVIANRPALLDCAFFGSPLPTIEW 1578
>gb|AF204158.1|AF204158 Drosophila melanogaster cell surface receptor TOLLO (Tollo) gene,
complete cds
Length = 5734
Score = 42.0 bits (97), Expect = 0.16
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 10/232 (4%)
Frame = +3
Query: 321 NIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVF--KVDIVLWYRDSCSGFL 378
N + ++I P +Y+ ILTA I +CI VF + ++ +W L
Sbjct: 3015 NASNATSTKMILNQPPKLDYIPILVAILTAFIFVMICISLVFIFRQEMRVWCHSRFGVRL 3194
Query: 379 -------PSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLE-GQFGYKLFIYG 430
K K +DA++ Y S + FV + L +LE G+ YKL ++
Sbjct: 3195 FYNAQKDVDKNEREKLFDAFVSYS--------SKDELFVNEELAPMLEMGEHRYKLCLHQ 3350
Query: 431 RDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL 490
RD VG E + + SRR I+++ + W E + A + L ++++
Sbjct: 3351 RDFPVGGYLPETIVQAIDSSRRTIMVVSENFIKSEWC--RFEFKSAHQSVLRDRRRRLIV 3524
Query: 491 LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMP 542
+ L ++ E PD ++K + + W GD FW+ LR+ +P
Sbjct: 3525 IVLGEVPQKELDPDLRLYLK-TNTYLQW-GD---------KLFWQKLRFALP 3647
>ref|NM_004540.1| Homo sapiens neural cell adhesion molecule 2 (NCAM2), mRNA
Length = 4723
Score = 42.0 bits (97), Expect = 0.16
Identities = 46/206 (22%), Positives = 81/206 (38%), Gaps = 2/206 (0%)
Frame = +1
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
Y N+ T IS +R + + N +L + D G Y C R + V+ N
Sbjct: 517 YHNEEVTTISDNRLAML--ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 690
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFF-- 178
P Q +F + + C + + P + W++N K L+ +N +
Sbjct: 691 PPAISMPQKSFNATAERGEEMTFSC------RASGSPEPAISWFRNGK-LIEENEKYILK 849
Query: 179 GVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNET 238
G +L VRN+ G Y+CR + G+ + F+ +P I+ +NET
Sbjct: 850 GSNTELTVRNIINSDGGPYVCRAT-NKAGEDEKQAFLQVFV--------QPHIIQLKNET 1002
Query: 239 IEADPGSMIQLICNVTGQFSDLVYWK 264
+ + L+C+ G+ + WK
Sbjct: 1003TYEN--GQVTLVCDAEGEPIPEITWK 1074
>gb|U75330.1|HSU75330 Human neural cell adhesion protein (NCAM21) mRNA, complete cds
Length = 4723
Score = 42.0 bits (97), Expect = 0.16
Identities = 46/206 (22%), Positives = 81/206 (38%), Gaps = 2/206 (0%)
Frame = +1
Query: 61 YKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLEND 120
Y N+ T IS +R + + N +L + D G Y C R + V+ N
Sbjct: 517 YHNEEVTTISDNRLAML--ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 690
Query: 121 PGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFF-- 178
P Q +F + + C + + P + W++N K L+ +N +
Sbjct: 691 PPAISMPQKSFNATAERGEEMTFSC------RASGSPEPAISWFRNGK-LIEENEKYILK 849
Query: 179 GVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNET 238
G +L VRN+ G Y+CR + G+ + F+ +P I+ +NET
Sbjct: 850 GSNTELTVRNIINSDGGPYVCRAT-NKAGEDEKQAFLQVFV--------QPHIIQLKNET 1002
Query: 239 IEADPGSMIQLICNVTGQFSDLVYWK 264
+ + L+C+ G+ + WK
Sbjct: 1003TYEN--GQVTLVCDAEGEPIPEITWK 1074
>dbj|AB040929.1|AB040929 Homo sapiens mRNA for KIAA1496 protein, partial cds
Length = 4594
Score = 42.0 bits (97), Expect = 0.16
Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 8/286 (2%)
Frame = +2
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKT--KVTVTVL 117
W N+ + + D + Q+ HL+ + D G Y C+V + + T VL
Sbjct: 146 WIFNEYPSFVEEDSRRFVSQETGHLYISKVEPSDVGNYTCVVTSMVTNARVLGSPTPLVL 325
Query: 118 ENDPGLCY---STQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDN 174
+D + + FP+ L A ++ + N +P++ W ++
Sbjct: 326 RSDGVMGEYEPKIEVQFPETLPAAKGSTVKLECFAL----GNPIPQINWRRSDGLPFSSK 493
Query: 175 VSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSP 234
+ L + N +E G Y C I EN R + V +
Sbjct: 494 IKLRKFSGVLEIPNFQQEDAGSYEC---------------------IAENSRGKNV--AR 604
Query: 235 RNETIEADPGSMIQLICNVTGQFSDLVYWKWNGS-EIEWNDPFLAEDYQFVEHPSTKRKY 293
T A P +QLI +V D +YW+ S + + + +L V T+ +
Sbjct: 605 GRLTYYAKP-HWVQLIKDVEIAVEDSLYWECRASGKPKPSYRWLKNGAALVLEERTQIEN 781
Query: 294 TLITTLNISEVKSQFYRYPFICVVKNTN--IFESAHVQLIYPVPDF 337
+T N+S S ++ C+ +N + ++ SA ++++ PDF
Sbjct: 782 GALTISNLSVTDSGMFQ----CIAENKHGLVYSSAELKVVASAPDF 907
>gb|AF202063.1|AF202063 Homo sapiens fibroblast growth factor receptor 4, soluble-form
splice variant (FGFR4) mRNA, complete cds
Length = 2418
Score = 42.0 bits (97), Expect = 0.16
Identities = 47/182 (25%), Positives = 71/182 (38%), Gaps = 27/182 (14%)
Frame = +1
Query: 45 KCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKV--EDSGYYYCIVR 102
+CP N TI W K D + +R I +++H V V D G Y C+V
Sbjct: 547 RCPAAGNPT--PTIRWLK-DGQAFHGGNRIGGIRLRHQHWSLVMESVVPSDRGTYTCLVE 717
Query: 103 NSTYCLKTKVTVTVLENDP-------GLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDEN 155
N+ ++ + VLE P GL +T A + D L+C K +
Sbjct: 718 NAVGSIRYNYLLDVLERSPHRPILQAGLPANTTAV------VGSDVELLC------KVYS 861
Query: 156 NELPEVQWYKNCKPLLLDNVSFFGVK------------------DKLLVRNVAEEHRGDY 197
+ P +QW K+ ++ N S FG + L +RNV+ E G+Y
Sbjct: 862 DAQPHIQWLKH----IVINGSSFGADGFPYVQVLKTADINSSEVEVLYLRNVSAEDAGEY 1029
Query: 198 IC 199
C
Sbjct: 1030TC 1035
Score = 38.1 bits (87), Expect = 2.4
Identities = 56/234 (23%), Positives = 85/234 (35%), Gaps = 30/234 (12%)
Frame = +1
Query: 60 WYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVT---- 115
WYK S+ A R + E F+P ED+G Y C+ R S L+ +T
Sbjct: 232 WYKEGSRLA-PAGRVRGWRGRLEIASFLP---EDAGRYLCLARGSMIVLQNLTLITGDSS 399
Query: 116 VLENDP-----------GLCYSTQA---TFPQR----LHIAGDGSLV---CPYVSYFKDE 154
ND Y QA T PQR LH G+ V CP
Sbjct: 400 TSSNDDEDPKSHRDLSNRHSYPQQAPYWTHPQRMEKKLHAVPAGNTVKFRCPAA------ 561
Query: 155 NNELPEVQWYKNCKPLLLDNVSFFGVKDK-----LLVRNVAEEHRGDYICRMSYTFRGKQ 209
N P ++W K+ + N G++ + L++ +V RG Y C + +
Sbjct: 562 GNPTPTIRWLKDGQAFHGGN-RIGGIRLRHQHWSLVMESVVPSDRGTYTCLVENAVGSIR 738
Query: 210 YPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYW 263
Y + + E RP++ + A GS ++L+C V + W
Sbjct: 739 YN-----YLLDVLERSPHRPILQAGLPANTTAVVGSDVELLCKVYSDAQPHIQW 885
>