TBLASTN 2.2.2 [Dec-14-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 
         (386 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
           1,164,257 sequences; 587,334,133 total letters

Searching... please wait.. done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NM_008264.1|  Mus musculus homeo box A13 (Hoxa13), mRNA       488  e-136
ref|XM_004921.1|  Homo sapiens homeo box A13 (HOXA13), mRNA       481  e-134
ref|NM_000522.1|  Homo sapiens homeo box A13 (HOXA13), mRNA       476  e-132
gb|AY030050.1|  Gallus gallus homeo box A13 (HOXA13) mRNA, c...   332  3e-89
gb|U59322.1|MMU59322  Mus musculus transcription factor HOXA...   330  1e-88
gb|AC004080.2|  Homo sapiens chromosome 7 clone RP1-170O19, ...   323  2e-86
gb|U82827.1|HSU82827  Human transcription factor HOXA13 (HOX...   318  4e-85
gb|AC107365.2|  Danio rerio, clone -241I7, complete sequence      236  2e-60
gb|AF255676.1|AF255676  Homo sapiens homeoprotein C13 (HOXC1...   228  5e-58
ref|NM_017410.1|  Homo sapiens homeo box C13 (HOXC13), mRNA       228  5e-58
gb|AF193796.1|AF193796  Mus musculus homeodomain protein (Ho...   228  5e-58
ref|XM_006804.4|  Homo sapiens homeo box C13 (HOXC13), mRNA       228  5e-58
gb|AF263466.2|AF263466  Homo sapiens HOXC13 (HOXC13) mRNA, c...   228  5e-58
gb|BC002754.1|BC002754  Homo sapiens, homeo box C13, clone M...   228  5e-58
dbj|AK024027.1|AK024027  Homo sapiens cDNA FLJ13965 fis, clo...   228  9e-58
ref|NM_008267.1|  Mus musculus homeo box B13 (Hoxb13), mRNA       220  2e-55
gb|U57051.1|MMU57051  Mus musculus Hoxb-13 mRNA, complete cds     220  2e-55
gb|BC013639.1|BC013639  Mus musculus, homeo box B13, clone M...   220  2e-55
gb|BC007092.1|BC007092  Homo sapiens, homeo box B13, clone M...   216  2e-54
gb|U57052.1|HSU57052  Human Hoxb-13 mRNA, complete cds            216  2e-54
ref|XM_030437.1|  Homo sapiens homeo box B13 (HOXB13), mRNA       216  2e-54
gb|U81599.1|HSU81599  Homo sapiens homeodomain protein HOXB1...   214  8e-54
ref|NM_006361.2|  Homo sapiens homeo box B13 (HOXB13), mRNA       214  8e-54
ref|NM_000523.1|  Homo sapiens homeo box D13 (HOXD13), mRNA       209  3e-52
gb|L09550.1|CHKHOXD13A  Chicken homeobox protein hoxd13 mRNA...   209  3e-52
gb|U20942.1|AMU20942  Ambystoma mexicanum homeobox protein H...   209  4e-52
ref|NM_008275.1|  Mus musculus homeo box D13 (Hoxd13), mRNA       207  1e-51
emb|X99291.1|MMHOXD13  M.musculus hoxd-13 gene                    207  1e-51
gb|AF298184.1|AF298184  Ambystoma mexicanum homeodomain prot...   190  2e-46
emb|X87752.1|DRHOXD13G  D.rerio Hoxd-13 gene                      162  4e-38
emb|AJ314743.1|XLA314743  Xenopus laevis partial mRNA for ho...   148  7e-34
gb|AC021667.21|AC021667  Mus musculus, clone RP23-304J12, co...   137  2e-30
gb|AC107364.1|  Danio rerio, clone -10O19, complete sequence      136  3e-30
gb|AC012531.11|AC012531  Homo sapiens, clone RP11-83K1, comp...   131  9e-29
gb|AF071242.1|AF071242  Danio rerio homeobox protein (hoxa13...   131  1e-28
gb|AF224263.1|AF224263  Heterodontus francisci Evx2 (evx2), ...   130  3e-28
gb|AF071241.1|AF071241  Danio rerio homeobox protein (hoxa13...   128  8e-28
gb|AC015584.18|  Mus musculus, clone RP23-400H17, complete s...   128  1e-27
gb|L35012.1|MUSHOXAE  Mus musculus (clone cos2W3H) Hox gene ...   127  2e-27
gb|AF005220.1|HUMTFHOXD2  Homo sapiens transcription factor ...   127  2e-27
dbj|AB038155.1|AB038155  Homo sapiens mRNA for NUP98-HOXD13 ...   127  2e-27
gb|AC009336.13|AC009336  Homo sapiens chromosome 2, clone RP...   127  2e-27
dbj|AB032481.1|AB032481  Homo sapiens HOXD13 gene for homeob...   127  2e-27
gb|AC091179.5|  Homo sapiens chromosome 17, clone CTD-2377D2...   125  5e-27
dbj|D10290.1|CHKCHOX4G  Gallus gallus Chox-4g gene for homeo...   125  6e-27
gb|S80553.1|S80553  HOX-4 complex: Hox-4.8=homeobox gene [mi...   124  2e-26
emb|AJ335159.1|HSA335159  Homo sapiens genomic sequence surr...   120  2e-25
gb|AF071261.1|AF071261  Danio rerio homeobox protein (hoxc13...   119  5e-25
emb|Y07699.1|DRHOXA13  D.rerio HOXA-13 gene, partial              117  2e-24
gb|AF071262.1|AF071262  Danio rerio homeobox protein (hoxc13...   112  7e-23
emb|AJ335615.1|HSA335615  Homo sapiens genomic sequence surr...   106  3e-21
gb|BC016712.1|BC016712  Homo sapiens, clone IMAGE:4108342, mRNA   103  3e-20
emb|AJ324355.1|HSA324355  Homo sapiens genomic sequence surr...    96  7e-18
gb|AF005219.1|HUMTFHOXD1  Homo sapiens transcription factor ...    91  1e-16
emb|AJ335415.1|HSA335415  Homo sapiens genomic sequence surr...    91  1e-16
ref|NM_014212.1|  Homo sapiens homeo box C11 (HOXC11), mRNA        86  4e-15
emb|AJ000041.1|HSHOXC11P  Homo sapiens mRNA for HOXC11             86  4e-15
gb|BC001543.1|BC001543  Homo sapiens, homeo box C11, clone M...    86  4e-15
ref|XM_012215.3|  Homo sapiens homeo box C11 (HOXC11), mRNA        86  4e-15
gb|M81249.1|CHKHOXA  Gallus gallus homeodomain-containing pr...    86  7e-15
gb|AF151672.1|AF151672  Nereis virens Post1 homeobox protein...    84  2e-14
emb|X99679.1|HSHOXC13  H.sapiens mRNA for HOXC13 protein           84  3e-14
gb|M81250.1|CHKHOXB  Gallus gallus homeodomain-containing pr...    83  4e-14
ref|NM_021192.1|  Homo sapiens homeo box D11 (HOXD11), mRNA        83  4e-14
emb|AJ319668.1|XLA319668  Xenopus laevis partial mRNA for ho...    83  5e-14
gb|AF031481.1|AF031481  Ambystoma mexicanum homeobox transcr...    83  5e-14
ref|NM_008273.1|  Mus musculus homeo box D11 (Hoxd11), mRNA        82  6e-14
emb|X57674.1|NVNVHBOX2  N.viridescens RNA for homeobox gene ...    82  6e-14
ref|NM_005523.3|  Homo sapiens homeo box A11 (HOXA11), mRNA        82  6e-14
dbj|D10288.1|CHKCHOX4E  Gallus gallus Chox-4e gene for homeo...    82  1e-13
emb|X60395.1|MMHOX46  M.musculus Hox-4.6 gene                      82  1e-13
emb|X71422.1|MMHOXD11  M.musculus Hoxd-11 gene                     82  1e-13
emb|X60762.1|MMHOX46E2  M.musculus Hox-4.6 gene, exon 2            82  1e-13
gb|AF154915.1|AF154915  Homo sapiens transcription factor HO...    82  1e-13
gb|U20370.1|MMU20370  Mus musculus homeobox protein (Hoxa11)...    81  2e-13
ref|NM_010450.1|  Mus musculus homeo box A11 (Hoxa11), mRNA        81  2e-13
gb|AF071164.1|AF071164  Homo sapiens homeobox A11 (HOXA11) g...    80  2e-13
gb|AF039307.1|AF039307  Homo sapiens homeobox A11 (HOXA11) g...    80  2e-13
gb|AF287137.1|AF287137  Danio rerio Hoxa-11b gene, complete cds    80  3e-13
gb|AF287136.1|AF287136  Danio aequipinnatus Hoxa-11b gene, c...    80  3e-13
emb|X58849.1|MMHOX47  Murine Hox-4.7 gene                          80  3e-13
gb|AF144679.1|AF144679  Lingula anatina Post-1 homeodomain p...    80  4e-13
gb|AF287138.1|AF287138  Danio rerio Hoxa-11a gene, complete cds    80  4e-13
gb|AF042652.1|AF042652  Strongylocentrotus purpuratus homeod...    80  4e-13
ref|NM_008274.1|  Mus musculus homeo box D12 (Hoxd12), mRNA        80  4e-13
gb|U20371.1|MMU20371  Mus musculus homeobox protein (Hoxa11)...    80  4e-13
gb|BC015565.1|BC015565  Homo sapiens, homeo box B9, clone MG...    79  5e-13
gb|L35011.1|MUSHOXAD  Mus musculus (clone cos2W3E) Hox gene ...    79  5e-13
gb|AF328962.1|AF328963S2  Homo sapiens HOXC12 gene, exon 2 a...    79  5e-13
ref|NM_024017.1|  Homo sapiens homeo box B9 (HOXB9), mRNA          79  5e-13
emb|X83451.1|CIHBOX5  C.intestinalis DNA for homeobox (435 bp)     79  5e-13
emb|X62019.1|GGGHOX  G.gallus Ghox 4.7 mRNA                        79  7e-13
gb|L35010.1|MUSHOXAC  Mus musculus (clone cos2W3A) Hox gene ...    79  7e-13
gb|AF276815.1|AF276815  Branchiostoma floridae homeodomain-c...    79  7e-13
ref|XM_087004.1|  Homo sapiens similar to homeo box D12 (LOC...    79  7e-13
emb|X87751.1|DRHOXD11G  D.rerio Hoxd-11 gene                       79  7e-13
ref|XM_010803.1|  Homo sapiens homeo box D12 (HOXD12), mRNA        79  7e-13
dbj|D10289.1|CHKCHOX4F  Gallus gallus Chox-4f gene for homeo...    79  7e-13
gb|AF071260.1|AF071260  Danio rerio homeobox protein (hoxc12...    79  9e-13
gb|M34857.1|MUSHOX25A  Mouse Hox-2.5 mRNA                          79  9e-13
ref|XM_028620.2|  Homo sapiens homeo box C9 (HOXC9), mRNA          79  9e-13
dbj|AK056414.1|AK056414  Homo sapiens cDNA FLJ31852 fis, clo...    79  9e-13
dbj|AK000445.1|AK000445  Homo sapiens cDNA FLJ20438 fis, clo...    79  9e-13
dbj|AB026968.1|AB026968  Oryzias latipes gene for HOXD9B, pa...    78  1e-12
dbj|AK056123.1|AK056123  Homo sapiens cDNA FLJ31561 fis, clo...    78  1e-12
gb|AF071258.1|AF071258  Danio rerio homeobox protein (hoxc11...    78  2e-12
gb|AY014296.1|AY014295S2  Homo sapiens HOXB9 gene, exon 2 an...    77  2e-12
gb|S66855.1|S66855  HoxB9=Hox-2.5 [mice, embryos, mRNA Parti...    77  2e-12
emb|X16172.1|HSHOX25  Human HOX-2.5 gene for homeodomain pro...    77  2e-12
dbj|AK012173.1|AK012173  Mus musculus 10 days embryo whole b...    77  2e-12
gb|AF071259.1|AF071259  Danio rerio homeobox protein (hoxc11...    77  2e-12
ref|NM_008272.1|  Mus musculus homeo box C9 (Hoxc9), mRNA          77  2e-12
emb|X55318.1|MMHOX32A  Mus musculus Hox-3.2 gene                   77  2e-12
emb|X07647.1|MMHOX32  Mouse mRNA for Hox 3.2 protein               77  2e-12
gb|AC011194.15|AC011194  Mus musculus chromosome 11, clone R...    77  2e-12
gb|M35603.1|MUSHOXMAA  Mouse Hox-3.1 gene and Hox-3.2-Hox-3....    77  2e-12
gb|U61980.1|OAU61980  Ovis aries Hoxc-9 mRNA, partial cds          77  2e-12
gb|AC009789.21|AC009789  Homo sapiens chromosome 17, clone R...    77  2e-12
gb|AY014302.1|AY014301S2  Homo sapiens HOXC9 gene, exon 2 an...    77  2e-12
emb|Y07698.1|DRHOXA11  D.rerio HOXA-11 gene, partial               77  2e-12
gb|S76303.1|S76303  Hox-C|Hox-3 {clone 27b} [rats, Sprague-D...    77  2e-12
gb|U31564.1|HEU31564  Heliocidaris erythrogramma HEHBOX7 (He...    77  3e-12
gb|AF071240.1|AF071240  Danio rerio homeobox protein (hoxa11...    77  3e-12
emb|Z35150.1|BFHOX10G  B.floridae Hox-10 gene for homeobox p...    77  3e-12
ref|NM_021193.1|  Homo sapiens homeo box D12 (HOXD12), mRNA        77  3e-12
gb|AF071250.1|AF071250  Danio rerio homeobox protein (hoxb10...    77  3e-12
ref|XM_028621.1|  Homo sapiens homeo box C10 (HOXC10), mRNA        77  3e-12
gb|U05571.1|SCU05571  Styela clava Ascidian homeobox protein...    77  3e-12
gb|BC001293.1|BC001293  Homo sapiens, homeo box C10, clone M...    77  3e-12
gb|AF071267.1|AF071267  Danio rerio homeobox protein (hoxc9a...    77  3e-12
gb|AF255675.1|AF255675  Homo sapiens homeoprotein C10 (HOXC1...    77  3e-12
ref|NM_017409.1|  Homo sapiens homeo box C10 (HOXC10), mRNA        77  3e-12
gb|AF075754.2|AF075754  Holothuria glaberrima homeodomain-co...    77  3e-12
emb|X63507.1|MMHOX35  M.musculus HOX-3.5 gene                      77  3e-12
gb|U05600.1|SPU05600  Styela plicata Ascidian homeobox prote...    77  3e-12
gb|S73920.1|S73920  Styela clava DNA binding protein AHox2 (...    77  3e-12
gb|S73921.1|S73921  AHox3 [Styela plicata, Genomic, 180 nt]        77  3e-12
gb|BC019150.1|BC019150  Mus musculus, homeo box D9, clone MG...    76  5e-12
ref|XM_011611.3|  Homo sapiens homeo box A10 (HOXA10), mRNA        76  5e-12
gb|BC007600.1|BC007600  Homo sapiens, clone IMAGE:3347294, mRNA    76  5e-12
gb|AF453292.1|AF453292  Sus scrofa homeobox A11 mRNA, partia...    76  5e-12
gb|AF071256.1|AF071256  Danio rerio homeobox protein (hoxb9a...    76  5e-12
gb|BC013971.1|BC013971  Homo sapiens, clone MGC:12859 IMAGE:...    76  5e-12
ref|NM_013555.1|  Mus musculus homeo box D9 (Hoxd9), mRNA          76  5e-12
dbj|D11330.1|MUSHOX36C  Mouse Hox 3.6 gene                         76  5e-12
gb|U92572.1|FRU92572  Fugu rubripes homeobox protein HOXC-9 ...    76  5e-12
dbj|AB026969.1|AB026969  Oryzias latipes mRNA for HOXB9A, pa...    76  5e-12
gb|AY052760.1|  Euprymna scolopes posterior-1 homeodomain pr...    76  6e-12
dbj|AB026970.1|AB026970  Oryzias latipes mRNA for HOXC9A, co...    76  6e-12
dbj|AB049973.1|AB049973  Dugesia japonica mRNA for Hox class...    75  8e-12
ref|NM_002148.1|  Homo sapiens homeo box D10 (HOXD10), mRNA        75  8e-12
emb|X59373.1|HSHOX4D  Human HOX4D mRNA for a homeobox protein      75  8e-12
gb|BC013463.1|BC013463  Mus musculus, clone MGC:18685 IMAGE:...    75  8e-12
gb|U51413.1|RPU51413  Rasbora paviei Hoxd10 gene, exon 2, pa...    75  8e-12
gb|U51422.1|RHU51422  Rasbora heteromorpha Hoxd10 gene, exon...    75  8e-12
gb|U51412.1|DPU51412  Danio pulcher Hoxd10 gene, exon 2, par...    75  8e-12
gb|U51411.1|DKU51411  Danio kerri Hoxd10 gene, exon 2, parti...    75  8e-12
emb|X87753.1|DRHOXD12G  D.rerio Hoxd-12 gene                       75  8e-12
emb|X68976.1|NVHOXD  N.viridescens mRNA for Hoxd-10                75  8e-12
gb|U31600.1|HEU31600  Heliocidaris erythrogramma HEHBOX10 (H...    75  8e-12
dbj|D10287.1|CHKCHOX4D  Gallus gallus Chox-4d gene for homeo...    75  8e-12
gb|AF298186.1|AF298186  Ambystoma mexicanum homeodomain prot...    75  1e-11
gb|AF151673.1|AF151673  Nereis virens Post2 homeobox protein...    75  1e-11
gb|AF224262.1|AF224262  Heterodontus francisci HoxA10 (HoxA1...    75  1e-11
emb|X68975.1|NVHOXC  N.viridescens mRNA for Hoxc-10                75  1e-11
gb|AF298185.1|AF298185  Ambystoma mexicanum homeodomain prot...    75  1e-11
gb|AF031245.1|AF031245  Ambystoma mexicanum homeobox transcr...    75  1e-11
gb|AF144893.1|AF144893  Priapulus caudatus abdominal-B homeo...    75  1e-11
ref|NM_002142.1|  Homo sapiens homeo box A9 (HOXA9), mRNA          75  1e-11
gb|U20941.1|AMU20941  Ambystoma mexicanum homeobox protein H...    75  1e-11
ref|NM_010456.1|  Mus musculus homeo box A9 (Hoxa9), mRNA          75  1e-11
dbj|AB005457.1|AB005457  Mus musculus mRNA for Hoxa-9, compl...    75  1e-11
emb|X13537.1|CSHOX17B  Guinea pig mRNA for Hox-1.7 protein (...    75  1e-11
gb|U41813.1|HSU41813  Human class I homeoprotein (HOXA9) mRN...    75  1e-11
gb|U92573.1|FRU92573  Fugu rubripes homeobox protein HOXA-9 ...    75  1e-11
gb|U81511.1|HSU81511  Homo sapiens HOXA-9A and HOXA-9B (HOXA...    75  1e-11
gb|AF071268.1|AF071268  Danio rerio homeobox protein (hoxd9a...    75  1e-11
emb|AJ319749.1|XLA319749  Xenopus laevis partial mRNA for ho...    75  1e-11
ref|XM_088184.1|  Homo sapiens homeo box A9 (HOXA9), mRNA          75  1e-11
ref|XM_002545.1|  Homo sapiens homeo box D9 (HOXD9), mRNA          75  1e-11
ref|NM_014213.1|  Homo sapiens homeo box D9 (HOXD9), mRNA          75  1e-11
gb|AF071248.1|AF071248  Danio rerio homeobox protein (hoxa9a...    75  1e-11
emb|X59372.1|HSHOX4C  Human HOX4C mRNA for a homeobox protein      75  1e-11
gb|M28449.1|MUSHOXA  Mouse Hox-1.7 protein mRNA, 3' end            75  1e-11
emb|X97750.1|GGHOXA9  G.gallus mRNA for Hoxa-9 protein             75  1e-11
emb|X13536.1|CSHOX17A  Guinea pig mRNA for Hox-1.7 protein (...    75  1e-11
gb|BC006537.1|BC006537  Homo sapiens, clone MGC:1934 IMAGE:2...    75  1e-11
gb|BC010023.1|BC010023  Homo sapiens, Similar to homeo box A...    75  1e-11
gb|AF010258.1|AF010258  Homo sapiens homeodomain protein (HO...    75  1e-11
emb|X61916.1|XBHBEX  X.borealis homeobox gene, exon                75  1e-11
emb|X62669.1|MMHOX4  M.musculus genes HOX-4.4 and Hox-4.5          75  1e-11
emb|X15506.1|HSHOX52  Human Hox5.2 gene fragment                   75  1e-11
gb|U82759.1|HSU82759  Human homeodomain protein HoxA9 mRNA, ...    74  2e-11
emb|X13147.1|TGHB4  Sea urchin HB4 gene for homeo domain pro...    74  2e-11
gb|U51421.1|DRU51421  Danio rerio Hoxd10 gene, exon 2, parti...    74  2e-11
gb|U51415.1|DPU51415  Devario pathirana Hoxd10 gene, exon 2,...    74  2e-11
gb|U51416.1|DMU51416  Devario malabaricus Hoxd10 gene, exon ...    74  2e-11
gb|U51409.1|DFU51409  Danio frankei Hoxd10 gene, exon 2, par...    74  2e-11
gb|U51420.1|DDU51420  Devario devario Hoxd10 gene, exon 2, p...    74  2e-11
gb|AF254953.1|AF254953  Tripneustes gratilla homeodomain pro...    74  2e-11
emb|Y16574.1|LSHOX9  Lineus sanguineus Hox-9 gene                  74  2e-11
gb|AF089743.1|AF089743  Morone saxatilis homeodomain protein...    74  2e-11
gb|AF353624.1|AF353624  Gallus gallus caudal-type homeobox p...    74  2e-11
gb|U51423.1|REU51423  Rasbora elegans Hoxd10 gene, exon 2, p...    74  2e-11
gb|U51414.1|DCU51414  Devario cf. aequipinnatus Hoxd10 gene,...    74  2e-11
dbj|AB026972.1|AB026972  Oryzias latipes mRNA for HOXA9A, co...    74  2e-11
ref|NM_013554.1|  Mus musculus homeo box D10 (Hoxd10), mRNA        74  2e-11
emb|X97819.1|TCZEN  T.castaneum mRNA for Zen Tc                    74  2e-11
emb|X14714.1|MMHOX52  Mus musculus Hox 5.2 gene for homeobox...    74  2e-11
gb|AY052761.1|  Euprymna scolopes posterior-2 homeodomain pr...    74  3e-11
dbj|AK002670.1|AK002670  Mus musculus adult male kidney cDNA...    74  3e-11
gb|U35632.1|HSU35632  Human insulin promoter factor 1 (PDX-1...    74  3e-11
ref|NM_008263.1|  Mus musculus homeo box A10 (Hoxa10), mRNA        74  3e-11
gb|L08757.1|MUSHOXAA  Mus musculus homeobox protein (Hoxa10)...    74  3e-11
gb|AF281156.1|AF281156  Sus scrofa homeobox protein A10 mRNA...    74  3e-11
ref|XM_088187.1|  Homo sapiens hypothetical gene LOC155287 (...    74  3e-11
gb|AF040714.1|AF040714  Homo sapiens homeobox protein A10 (H...    74  3e-11
gb|M30599.1|HUMHOXAC  Human homeobox protein mRNA, partial c...    74  3e-11
emb|X58430.1|HSHOX18  Homo sapiens Hox1.8 gene for homeobox ...    74  3e-11
gb|AF227923.1|AF227923  Tribolium castaneum abdominal-B mRNA...    74  3e-11
ref|NM_018951.1|  Homo sapiens homeo box A10 (HOXA10), mRNA        74  3e-11
ref|NM_000209.1|  Homo sapiens insulin promoter factor 1, ho...    74  3e-11
emb|X99894.1|HSGSFGENE  H.sapiens mRNA coding for insulin pr...    74  3e-11
emb|X14715.1|MMHOX53  Mus musculus Hox 5.3 gene for homeobox...    74  3e-11
dbj|AB049972.1|AB049972  Dugesia japonica mRNA for Hox class...    74  3e-11
gb|U30329.1|HSU30329  Human insulin promoter factor 1 (IPF1)...    74  3e-11
emb|X87750.1|DRHOXD10G  D.rerio Hoxd-10 gene                       74  3e-11
emb|X83450.1|CIHBOX4  C.intestinalis DNA for homeobox (214 bp)     73  4e-11
emb|AJ314827.1|XLA314827  Xenopus laevis partial mRNA for ho...    73  4e-11
gb|S61771.1|S61771  Hox-1 cluster: Hox-1.8 {homeobox} [mice,...    73  4e-11
emb|Z35149.1|BFHOX9G  B.floridae Hox-9 gene for homeobox pro...    73  4e-11
gb|U51418.1|DAU51418  Danio aff. tweediei Hoxd10 gene, exon ...    73  4e-11
gb|U51417.1|DAU51417  Danio aff. albolineatus Hoxd10 gene, e...    73  4e-11
gb|U73854.1|MAU73854  Mesocricetus auratus homeodomain prote...    73  4e-11
dbj|D11331.1|MUSHOX18D  Mouse Hox 1.8 gene                         73  4e-11
emb|Y07697.1|DRHOXA10  D.rerio HOXA-10 gene exon                   73  4e-11
emb|X62619.1|BMABDBHB  B.mori Abd-B gene homeobox                  73  4e-11
emb|AJ131397.1|CSA131397  Cupiennius salei mRNA for abdominal-B    73  5e-11
dbj|AB028838.1|  Homo sapiens mRNA for homeobox protein GSH-...    73  5e-11
dbj|AB027048.1|AB027048  Oryzias latipes MF-Hox13-3 homeobox...    73  5e-11
gb|AF306344.1|AF306343S2  Homo sapiens homeobox protein 2 (G...    73  5e-11
ref|NM_013311.1|  Homo sapiens insulin upstream factor 1 (IU...    72  7e-11
gb|AF049893.1|AF049893  Homo sapiens insulin upstream factor...    72  7e-11
dbj|AB026967.1|AB026967  Oryzias latipes mRNA for HOXD9A, co...    72  7e-11
gb|AF172090.1|AF172090  Caenorhabditis elegans homeodomain p...    72  7e-11
dbj|AB055742.1|AB055742  Oryzias latipes MF-hoxA13b gene, pa...    72  7e-11
ref|NM_067173.1|  Caenorhabditis elegans                           72  7e-11
emb|Z22638.1|HMHOXEXNA  H.magnipapillata homeobox containing...    72  7e-11
gb|AF124593.1|AF124593  Cassiopea xamachana Scox-3 homeodoma...    72  7e-11
emb|AJ252182.1|HVU252182  Hydra vulgaris partial cnox-3 gene...    72  7e-11
dbj|AB026971.1|AB026971  Oryzias latipes mRNA for HOXA9B, co...    72  8e-11
gb|AF124594.1|AF124594  Cassiopea xamachana Scox-4 homeodoma...    72  1e-10
gb|AF172092.1|AF172092  Caenorhabditis elegans homeodomain p...    72  1e-10
dbj|D11329.1|MUSHOX35B  Mouse Hox 3.5 mRNA                         72  1e-10
ref|NM_067172.1|  Homeobox domain                                  72  1e-10
gb|S79041.1|S79041  Gsh-2=dispersed homeobox gene [mice, NIH...    71  1e-10
emb|Y07696.1|DRHOXA9  D.rerio HOXA-9 gene exon                     71  1e-10
gb|AF071249.1|AF071249  Danio rerio homeobox protein (hoxa9b...    71  1e-10
ref|NM_010451.1|  Mus musculus homeo box A2 (Hoxa2), mRNA          71  2e-10
gb|M95599.1|MUSHOMEO  Mus musculus homeobox-containing prote...    71  2e-10
emb|X69161.1|SGABDBG  S.gregaria Abd-B gene                        71  2e-10
gb|M93292.1|MUSHOX111B  Mouse homeobox protein (Hox1.11) mRN...    71  2e-10
gb|U04838.1|MMU04838  Mus musculus C57BL/6J homeobox protein...    71  2e-10
ref|NM_012581.1|  Rattus norvegicus homeobox A2 (Hoxa2), mRNA      71  2e-10
gb|M91802.1|RATHOX111A  Rattus norvegicus homeobox protein (...    71  2e-10
dbj|AB027049.1|AB027049  Oryzias latipes MF-Hox13-2 homeobox...    70  2e-10
ref|XM_062808.2|  Homo sapiens similar to bA438F9.1 (novel p...    70  2e-10
dbj|AB044157.1|AB044157  Homo sapiens mRNA for homeobox prot...    70  2e-10
dbj|AB027047.1|AB027047  Oryzias latipes MF-Hox13-1 homeobox...    70  3e-10
gb|J03770.1|MUSHOX42A  Mouse homeobox protein (hox-4.2) mRNA...    70  4e-10
emb|AJ133025.1|MAB133025  Megaselia abdita zen gene, exons 1-2     70  4e-10
gb|AF124592.1|AF124592  Cassiopea xamachana Scox-2 homeodoma...    70  4e-10
gb|AY036893.1|  Podocoryne carnea transcription factor Cnox4...    69  6e-10
gb|AF321227.1|AF321227  Tribolium castaneum Ftz (ftz), Scr (...    69  6e-10
gb|AF071257.1|AF071257  Danio rerio homeobox protein (hoxc10...    69  6e-10
emb|AJ005421.1|TCAJ5421  Tribolium castaneum mRNA for caudal...    69  6e-10
ref|NM_022852.1|  Rattus norvegicus pancreatic and duodenal ...    69  7e-10
gb|U04833.1|RNU04833  Rattus norvegicus NEDH islet/duodenum ...    69  7e-10
gb|S67435.1|S67435  somatostatin transactivating factor-1 [r...    69  7e-10
ref|NM_013553.1|  Mus musculus homeo box C4 (Hoxc4), mRNA          69  9e-10
emb|X69019.1|MMHOX35MR  M.musculus Hox-3.5 mRNA                    69  9e-10
gb|AF144680.1|AF144680  Lingula anatina Post-2 homeodomain p...    69  9e-10
emb|X74323.1|GDHOXA2  G.gallus mRNA for Hoxa2 protein              69  9e-10
emb|X16134.1|DMABDBP3  Drosophila Abd-B P3 mRNA                    69  9e-10
gb|AF144892.1|AF144892  Priapulus caudatus HB4 homeodomain p...    69  9e-10
gb|M21173.1|DROBXCA  D.melanogaster iab-7 mRNA, partial cds,...    69  9e-10
ref|XM_082445.1|  Abdominal B, mRNA                                69  9e-10
emb|X15080.1|DMBX189B  Drosophila pH189 mRNA of distal BX-C ...    69  9e-10
gb|AF043432.2|AF043432  Gallus gallus Mox-1 related protein ...    69  9e-10
dbj|AK016033.1|AK016033  Mus musculus adult male testis cDNA...    69  9e-10
dbj|AK020261.1|AK020261  Mus musculus adult male cecum cDNA,...    69  9e-10
ref|NM_080157.1|  Drosophila melanogaster Abdominal B (Abd-B...    69  9e-10
emb|X51663.1|DMABDBCLA  D.melanogaster RNA for Abd-B gene, c...    69  9e-10
ref|NM_008814.1|  Mus musculus pancreatic and duodenal homeo...    69  9e-10
emb|X74342.1|MMIPF1  M.musculus mRNA for IPF1 protein              69  9e-10
gb|M26884.1|XELHOXAB2  X.laevis homeobox protein (Hox1A) gen...    69  9e-10
ref|NM_014620.1|  Homo sapiens homeo box C4 (HOXC4), mRNA          69  9e-10
emb|X07495.1|HSHOX329  Human mRNA for cp19 homeobox from HOX...    69  9e-10
ref|NM_008178.1|  Mus musculus genomic screened homeo box 1 ...    68  1e-09
gb|U21224.1|MMU21224  Mus musculus homeobox Gsh-1 mRNA, comp...    68  1e-09
ref|NM_010469.1|  Mus musculus homeo box D4 (Hoxd4), mRNA          68  1e-09
gb|U32943.1|SAU32943  Schistocerca americana Antennapedia ho...    68  1e-09
ref|NG_000242.1|  Drosophila melanogaster bicoid (bcd) on ch...    68  1e-09
emb|AL390738.4|AL390738  Human DNA sequence from clone RP11-...    68  1e-09
gb|AE003674.2|AE003674  Drosophila melanogaster genomic scaf...    68  1e-09
emb|X68347.1|SZEN1A  Drosophila sp. zerknuellt (zen) z1 gene       68  1e-09
gb|U04302.1|U04302  Xenopus laevis homeobox protein (xCAD2) ...    68  1e-09
gb|AE001572.2|AE001572  Drosophila melanogaster Antennapedia...    68  1e-09
ref|NM_057445.1|  Drosophila melanogaster zerknullt (zen), t...    68  1e-09
gb|AC002512.1|AC002512  Drosophila melanogaster (P1 DS00276 ...    68  1e-09
gb|AC095014.1|  Drosophila melanogaster, chromosome 3R, regi...    68  1e-09
dbj|AB044158.1|AB044158  Homo sapiens gene for homeobox prot...    68  1e-09
gb|U19238.1|AMU19238  Ambystoma mexicanum homeobox protein (...    68  1e-09
ref|NG_000212.1|  Drosophila melanogaster zerknullt (zen) on...    68  1e-09
emb|X16849.1|XLHBOX8  Xenopus laevis XlHbox 8 gene for homeo...    68  1e-09
gb|AF417198.1|AF417198  Silurana tropicalis cad2 mRNA, compl...    68  2e-09
gb|AF071234.1|AF071234  Petromyzon marinus homeobox protein ...    68  2e-09
ref|NM_057606.1|  Drosophila melanogaster caudal (cad), tran...    68  2e-09
gb|AF080565.1|AF080565  Anopheles gambiae Antennapedia homeo...    68  2e-09
gb|AY069565.1|  Drosophila melanogaster LD29596 full length ...    68  2e-09
gb|AF052054.1|AF052054  Pristionchus pacificus homeotic prot...    68  2e-09
ref|NG_000352.1|  Drosophila melanogaster caudal (cad) on ch...    67  2e-09
emb|X57158.1|CHCHOXM  Chicken CHOX M mRNA for HOX-4.3-relate...    67  2e-09
gb|AC007467.4|AC007467  Drosophila melanogaster, chromosome ...    67  2e-09
gb|AE003668.3|AE003668  Drosophila melanogaster genomic scaf...    67  2e-09
gb|AC004759.1|AC004759  Drosophila melanogaster DNA sequence...    67  2e-09
emb|X07104.1|XLHBOX4  Xenopus mRNA containing homeobox (XlHb...    67  2e-09
gb|M62870.1|HYDCNOX2A  Hydra vulgaris antennapedia class hom...    67  2e-09
dbj|D16683.1|BMOSHOWA  Silkworm mRNA, homeobox gene caudal (...    67  2e-09
gb|AF417197.1|AF417197  Silurana tropicalis cad1 mRNA, compl...    67  2e-09
gb|S79684.1|S79684S1  Hirudo medicinalis homeobox protein (L...    67  2e-09
emb|AJ277388.1|HVU277388  Hydra vulgaris mRNA for cnox-2 hom...    67  2e-09
gb|BC011082.1|BC011082  Mus musculus, Similar to mesenchyme ...    67  3e-09
ref|NM_005193.1|  Homo sapiens caudal type homeo box transcr...    67  3e-09
gb|AF239666.1|AF239666  Homo sapiens CDX1 homeobox protein (...    67  3e-09
ref|XM_008351.3|  Homo sapiens mesenchyme homeo box 1 (MEOX1...    67  3e-09
gb|U15212.1|HSU15212  Human caudal-type homeobox protein (CD...    67  3e-09
gb|AF031246.1|AF031246  Ambystoma mexicanum homeobox transcr...    67  3e-09
gb|AF112141.1|AF112141  Oryzias latipes homeodomain transcri...    67  3e-09
ref|XM_003791.1|  Homo sapiens caudal type homeo box transcr...    67  3e-09
gb|U51095.1|HSU51095  Human homeobox protein Cdx1 mRNA, comp...    67  3e-09
ref|NM_001804.1|  Homo sapiens caudal type homeo box transcr...    67  3e-09
gb|L20432.1|XELMOX2  Xenopus laevis homeobox protein (MOX2) ...    67  3e-09
ref|NM_004527.1|  Homo sapiens mesenchyme homeo box 1 (MEOX1...    67  3e-09
emb|Z15103.1|MMMOX1G  M.musculus Mox-1 mRNA                        67  3e-09
gb|U10492.1|HSMOX1  Human Mox1 protein (MOX1) mRNA, complete...    67  3e-09
ref|NM_010791.1|  Mus musculus mesenchyme homeobox 1 (Meox1)...    67  3e-09
emb|Z14313.1|HRLOX2MR  H.robusta Lox2 mRNA                         67  4e-09
gb|AF137385.1|  Helobdella triserialis LOX18 homeodomain pro...    67  4e-09
ref|NM_019558.1|  Homo sapiens homeo box D8 (HOXD8), mRNA          67  4e-09
emb|X68324.1|BRHOX34A  B.rerio hox-3.4 gene for homeobox pro...    67  4e-09
ref|NM_007674.1|  Mus musculus caudal type homeo box 4 (Cdx4...    67  4e-09
gb|L08061.1|MUSCDX4A  Mus musculus homeobox protein (cdx 4) ...    67  4e-09
ref|NM_006735.1|  Homo sapiens homeo box A2 (HOXA2), mRNA          67  4e-09
gb|U92575.1|FRU92575  Fugu rubripes homeobox protein HOXB-4 ...    67  4e-09
emb|AJ401088.1|GGA401088  Gallus gallus mRNA for MOX-2 protein     67  4e-09
emb|X17566.1|HMLOX2G  H.medicinalis Lox2 gene (homeobox gene)      67  4e-09
ref|NM_008268.1|  Mus musculus homeo box B5 (Hoxb5), mRNA          66  5e-09
gb|M26283.1|MUSHOX21A  Mouse homeobox (Hox2.1) protein mRNA,...    66  5e-09
gb|U41840.1|EDU41840  Eleutheria dichotoma Cnox3 homeodomain...    66  5e-09
gb|AF071247.1|AF071247  Danio rerio homeobox protein (hoxa5a...    66  5e-09
emb|X66958.1|BRCAD1  B.rerio caudal homeobox mRNA ZF-cad1          66  5e-09
gb|AF151696.1|AF151696  Pristionchus pacificus MAB-5 mRNA, c...    66  5e-09
ref|XM_008561.1|  Homo sapiens homeo box B5 (HOXB5), mRNA          66  5e-09
gb|AF245689.1|AF245689  Acropora millepora homeodomain prote...    66  5e-09
dbj|AK012146.1|AK012146  Mus musculus 10 days embryo whole b...    66  5e-09
dbj|AB046532.1|AB046532  Gallus gallus CdxA mRNA for caudal-...    66  5e-09
dbj|AB026955.1|AB026955  Oryzias latipes mRNA for HOXC4A, co...    66  5e-09
emb|AJ005422.1|TCAJ5422  Tribolium castaneum mRNA for caudal...    66  5e-09
emb|X04706.1|HSHOM4  Human homeobox gene (clone HHO.c13)           66  5e-09
emb|X80668.1|CCCDX1  C.carpio cdx1 mRNA                            66  5e-09
ref|NM_002147.1|  Homo sapiens homeo box B5 (HOXB5), mRNA          66  5e-09
gb|M92299.1|HUMHOX2A  Human homeobox 2.1 protein (HOX2A) mRN...    66  5e-09
gb|AF085283.1|AF085283  Nematostella vectensis hox2 protein ...    66  5e-09
gb|M26679.1|HUMHOX13G  Homo sapiens homeobox protein (HOX-1....    66  5e-09
dbj|AB030175.1|AB030175  Dicyema orientale mRNA for DoxC, co...    66  5e-09
gb|M20705.1|DROANTPRB  D.melanogaster antennapedia gene (Ant...    66  6e-09
gb|M20704.1|DROANTPRA  Drosophila melanogaster antennapedia ...    66  6e-09
ref|NM_079525.1|  Drosophila melanogaster Antennapedia (Antp...    66  6e-09
gb|BC016763.1|BC016763  Homo sapiens, clone MGC:22628 IMAGE:...    66  6e-09
ref|XM_042818.1|  Homo sapiens homeo box D4 (HOXD4), mRNA          66  6e-09
gb|S76300.1|S76300  Hox-B|Hox-2 {clone 17b} [rats, Sprague-D...    66  6e-09
emb|X03062.1|DMCAD  Drosophila caudal (cad) mRNA fragment wi...    66  6e-09
gb|M21070.1|DROCADA2  D.melanogaster caudal gene (cad) encod...    65  8e-09
emb|X16846.1|GDGHOX21  Chicken homeobox gene Ghox 2.1 fragment     65  8e-09
emb|Z35143.1|BFHOX2G  B.floridae Hox-2 gene for homeobox pro...    65  8e-09
ref|NM_010453.1|  Mus musculus homeo box A5 (Hoxa5), mRNA          65  8e-09
emb|X12802.1|BRRZF21  Zebrafish mRNA for homeotic protein ZF-21    65  8e-09
emb|X07381.1|BRHOX21  Zebrafish Hox-2.1 gene homologue (ZF-21)     65  8e-09
emb|X68248.1|BRHOX2A  B.rerio DNA hox-2.1 and hox-2.2 genes        65  8e-09
ref|XM_040801.1|  Homo sapiens homeo box A5 (HOXA5), mRNA          65  8e-09
ref|NM_019102.1|  Homo sapiens homeo box A5 (HOXA5), mRNA          65  8e-09
gb|AF287967.1|AF287967  Homo sapiens homeobox B7 (HOXB7) gen...    65  8e-09
ref|NM_014621.1|  Homo sapiens homeo box D4 (HOXD4), mRNA          65  8e-09
emb|AL645798.2|  Zebrafish DNA sequence from clone XX-227H09...    65  8e-09
emb|X16840.1|MMHX13  Mouse Hox 1.3 mRNA for a homeodomain pr...    65  8e-09
gb|M36604.1|MUSHOX13B  Mouse homeobox 1.3 protein mRNA, comp...    65  8e-09
gb|AF071253.1|AF071253  Danio rerio homeobox protein (hoxb5b...    65  8e-09
emb|X52672.1|GGCHOXA  Chicken Chox-a mRNA for homeodomain pr...    65  8e-09
gb|BC011063.1|BC011063  Mus musculus, Similar to homeo box A...    65  8e-09
gb|K02572.1|HUMHOM2  Human putative homeo box Hu1                  65  8e-09
gb|M28021.1|MUSHOX13A  Mouse homeo domain protein (Hox 1.3) ...    65  8e-09
emb|Y00208.1|MMHOX13  Mouse Hox 1.3 gene for homeo domain pr...    65  8e-09
dbj|AB050887.1|AB050887  Branchiostoma floridae DNA, enhance...    65  8e-09
gb|AF052463.1|AF052463  Branchiostoma floridae homeobox prot...    65  8e-09
emb|X03033.1|MMHOBOX1  Mus musculus gene for homeo-box prote...    65  8e-09
dbj|AB028207.1|AB028207  Branchiostoma floridae AmphiHox2 ge...    65  8e-09
dbj|AB026962.1|AB026962  Oryzias latipes gene for HOXB5B, pa...    65  8e-09
gb|BC013682.1|BC013682  Homo sapiens, clone MGC:9376 IMAGE:3...    65  8e-09
gb|M13373.1|DROANTDFD  D.melanogaster (ANT-C locus) deformed...    65  1e-08
ref|NM_024016.1|  Homo sapiens homeo box B8 (HOXB8), mRNA          65  1e-08
emb|X95414.1|DTHOXA  Girardia tigrina DthoxA gene, partial         65  1e-08
gb|AF036325.1|AF036325  Danio rerio homeobox protein PDX-1 (...    65  1e-08
emb|Z32525.1|DTDNBIPR  D.tigrina mRNA for DNA-binding protein      65  1e-08
gb|AE003673.2|AE003673  Drosophila melanogaster genomic scaf...    65  1e-08
emb|X13721.1|MMHOX24  Murine Hox-2.4 mRNA                          65  1e-08
gb|S70444.1|S70444  Hoxa-4 [mice, testis, Genomic, 3002 nt]        65  1e-08
emb|X66861.1|MMHOX14B  Mus musculus Hox-1.4 gene                   65  1e-08
dbj|AB029759.1|AB029759  Paralichthys olivaceus mRNA for Hox...    65  1e-08
emb|X68045.1|BFHOMEOG  B.floridae gene for amphihox3               65  1e-08
ref|NG_000557.1|  Drosophila melanogaster Deformed (Dfd) on ...    65  1e-08
emb|X05136.1|DMDFD  Drosophila mRNA for Deformed (Dfd) protein     65  1e-08
dbj|D83534.1|D83534  Bombyx mori Dfd mRNA, complete cds            65  1e-08
ref|NM_057853.1|  Drosophila melanogaster Deformed (Dfd), tr...    65  1e-08
ref|NM_057320.1|  Drosophila melanogaster proboscipedia (pb)...    65  1e-08
gb|S67058.1|S67058  Hoxa-4/Hox-1.4=Hoxa-4 [mice, Genomic, 25...    65  1e-08
gb|AF004387.1|AF004387  Helobdella robusta homeodomain prote...    65  1e-08
gb|AF124591.1|AF124591  Cassiopea xamachana Scox-1 homeodoma...    65  1e-08
ref|NM_010836.1|  Mus musculus homeo box, msh-like 3 (Msx3),...    65  1e-08
gb|U62523.1|MMU62523  Mus musculus Msx3 mRNA, complete cds         65  1e-08
gb|M18399.1|MUSHOX24A  Mouse homeo box (Hox2.4) region             65  1e-08
gb|AF104002.1|AF104002  Thermobia domestica abdominal-B prot...    65  1e-08
gb|M37565.1|RATHOMBX1A  Rat homeobox protein R1a gene, compl...    65  1e-08
gb|AF035573.1|AF035573  Oryzias latipes developmental transc...    65  1e-08
dbj|AB024407.1|AB024407  Dugesia japonica mRNA for PLOX3-Dj,...    65  1e-08
emb|X99630.1|HSHOXC11  H.sapiens mRNA for HOXC11 protein, ex...    65  1e-08
gb|AF228509.1|AF228509  Tribolium castaneum prothoraxless mR...    65  1e-08
emb|X64626.1|CVCNOX2  C.viridissima homeobox gene cnox2 mRNA       65  1e-08
gb|AF277988.1|AF277988  Caenorhabditis briggsae LIN-39 mRNA,...    64  2e-08
ref|XM_088266.1|  Homo sapiens mesenchyme homeo box 2 (growt...    64  2e-08
gb|AF187068.1|AF187068  Tribolium castaneum clone pcmxp5 pro...    64  2e-08
gb|L36328.1|HUMGAX  Homo sapiens GAX mRNA, complete cds            64  2e-08
gb|AF452568.1|AF452568  Tribolium castaneum homeodomain tran...    64  2e-08
gb|S82178.1|S82168S2  IPF-1=insulin promoter factor 1 [human...    64  2e-08
emb|Z16406.1|MOX2A  Mus musculus Mox-2A mRNA                       64  2e-08
ref|NM_057322.1|  Drosophila melanogaster proboscipedia (pb)...    64  2e-08
ref|NM_066253.1|  C. elegans homeobox gene lin-39                  64  2e-08
ref|NM_002141.1|  Homo sapiens homeo box A4 (HOXA4), mRNA          64  2e-08
emb|AJ334855.1|HSA334855  Homo sapiens genomic sequence surr...    64  2e-08
gb|U81038.1|TCU81038  Tribolium castaneum transcription fact...    64  2e-08
gb|M74297.1|HUMHOX14  Human homeobox 1.4 protein mRNA, compl...    64  2e-08
emb|X63728.1|DMPROB  D.melanogaster proboscipedia mRNA             64  2e-08
gb|AF363233.1|AF363233  Phascolion strombi homeodomain trans...    64  2e-08
gb|AF268446.1|AF268446  Podocoryne carnea GSX transcription ...    64  2e-08
emb|AL353195.14|AL353195  Human DNA sequence from clone RP11...    64  2e-08
ref|NM_005924.1|  Homo sapiens mesenchyme homeo box 2 (growt...    64  2e-08
emb|X82629.1|HSMOX2  H.sapiens mRNA for Mox-2                      64  2e-08
dbj|D16684.1|BMOAHP  Silkworm mRNA for Antennapedia homologu...    64  2e-08
ref|NM_017149.1|  Rattus norvegicus mesenchyme homeobox 2 (M...    64  2e-08
emb|Z17223.1|RNGAXMR  R.norvegicus mRNA encoding Gax protein       64  2e-08
emb|AJ327718.1|HSA327718  Homo sapiens genomic sequence surr...    64  2e-08
gb|M24085.1|ZEFZF13A  Zebrafish homeobox protein (ZF-13) gen...    64  2e-08
gb|AF071252.1|AF071252  Danio rerio homeobox protein (hoxb4a...    64  2e-08
emb|X92654.2|SGHOX3  S.gregaria mRNA for group 3 homeodomain...    64  2e-08
gb|L19248.1|CELHOMDOMB  Caenorhabditis elegans homeodomain p...    64  2e-08
emb|X63729.1|DMAPROB  D.melanogaster alternative probosciped...    64  2e-08
gb|AF308821.1|AF308821  Branchiostoma floridae Mnx homeodoma...    64  2e-08
gb|BC002076.1|BC002076  Mus musculus, Similar to mesenchyme ...    64  2e-08
gb|AF461700.1|AF461700  Gallus gallus MOX-2 homeobox mRNA, p...    64  2e-08
gb|U82487.1|BFU82487  Branchiostoma floridae engrailed prote...    64  2e-08
gb|L19639.1|CELLIN39A  Caenorhabditis elegans homeobox prote...    64  2e-08
emb|Y16571.1|LSHOX3  Lineus sanguineus Hox-3 gene                  64  2e-08
ref|XM_004917.1|  Homo sapiens homeo box A4 (HOXA4), mRNA          64  2e-08
ref|NM_057323.1|  Drosophila melanogaster proboscipedia (pb)...    64  2e-08
ref|NM_057321.1|  Drosophila melanogaster proboscipedia (pb)...    64  2e-08
gb|BC017021.1|BC017021  Homo sapiens, mesenchyme homeo box 2...    64  2e-08
gb|AF035260.1|HUMPDX3  Homo sapiens insulin promoter factor ...    64  2e-08
ref|NM_023963.1|  Rattus norvegicus CDX2 protein (Cdx2), mRNA      64  2e-08
emb|AJ278466.1|RNO278466  Rattus norvegicus mRNA for CDX2 pr...    64  2e-08
gb|AF275310.1|  Haliotis rufescens Hox5 mRNA, complete cds         64  2e-08
emb|AJ132670.1|DME132670  Drosophila melanogaster buttonless...    64  2e-08
gb|M87803.1|MUSHOX43  Mus musculus homeobox protein (Hox-4.3...    64  2e-08
gb|U51096.1|HSU51096  Human homeobox protein Cdx2 mRNA, comp...    64  2e-08
gb|AC001650.1|AC001650  Drosophila melanogaster DNA sequence...    64  2e-08
ref|NG_000213.1|  Drosophila melanogaster zerknullt-related ...    64  2e-08
emb|X56561.1|MMHOX43  Mouse Hox-4.3 gene, homeo box-containi...    64  2e-08
ref|NG_000110.1|  Drosophila melanogaster proboscipedia (pb)...    64  2e-08
emb|X79494.1|DHFTZGEN  D.hydei fushi tarazu gene                   64  2e-08
ref|XM_039995.3|  Homo sapiens caudal type homeo box transcr...    64  2e-08
ref|NM_001265.1|  Homo sapiens caudal type homeo box transcr...    64  2e-08
emb|Y13709.1|HSCDX2  Homo sapiens caudal-type homeobox gene ...    64  2e-08
gb|AF163858.1|AF163858  Chaetopterus variopedatus homeoprote...    64  2e-08
emb|X68348.1|DSZEN2A  Drosophila sp. zerknuellt (zen) z2 gene      64  2e-08
ref|NM_057446.1|  Drosophila melanogaster zerknullt-related ...    64  2e-08
gb|AY014294.1|AY014293S2  Homo sapiens HOXB8 gene, exon 2 an...    64  2e-08
gb|M26883.1|XELHOXAB1  X.laevis homeobox protein (Hox1B) gen...    64  2e-08
gb|BC014461.1|BC014461  Homo sapiens, Similar to caudal type...    64  2e-08
emb|AJ130766.1|BFL130766  Branchiostoma floridae mRNA for Ms...    64  2e-08
ref|NM_019247.1|  Rattus norvegicus paired-like homeodomain ...    64  2e-08
emb|AJ011005.2|RNO011005  Rattus norvegicus mRNA for Ptx3 pr...    64  2e-08
>ref|NM_008264.1| Mus musculus homeo box A13 (Hoxa13), mRNA
          Length = 1318

 Score =  488 bits (1255), Expect = e-136
 Identities = 240/386 (62%), Positives = 240/386 (62%)
 Frame = +2

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 107 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 286

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 287 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAAAAYSSAPGEAPPSAAAAA 466

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 467 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 646

Query: 181 CARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHH 240
           CARMGPHPN                       GPAAEEFSSRAKEFAFYHQGYAAGPYHH
Sbjct: 647 CARMGPHPNAIKSCAQPASAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHH 826

Query: 241 HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 300
           HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW
Sbjct: 827 HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 1006

Query: 301 KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 360
           KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS
Sbjct: 1007KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 1186

Query: 361 ERQVTIWFQNRRVKEKKVINKLKTTS 386
           ERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1187ERQVTIWFQNRRVKEKKVINKLKTTS 1264
>ref|XM_004921.1| Homo sapiens homeo box A13 (HOXA13), mRNA
          Length = 1167

 Score =  481 bits (1237), Expect = e-134
 Identities = 238/388 (61%), Positives = 239/388 (61%), Gaps = 2/388 (0%)
 Frame = +1

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 180

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 181 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 360

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 361 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 540

Query: 181 CARMGPHPNXXXXXX--XXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
           CARMGPHPN                         GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 541 CARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 720

Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
           HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 721 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 900

Query: 299 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 358
           LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN
Sbjct: 901 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 1080

Query: 359 LSERQVTIWFQNRRVKEKKVINKLKTTS 386
           LSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1081LSERQVTIWFQNRRVKEKKVINKLKTTS 1164
>ref|NM_000522.1| Homo sapiens homeo box A13 (HOXA13), mRNA
          Length = 1167

 Score =  476 bits (1225), Expect = e-132
 Identities = 237/388 (61%), Positives = 238/388 (61%), Gaps = 2/388 (0%)
 Frame = +1

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 180

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 181 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 360

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 361 AAAAAAAAAAAAASSSGGPGPAGPAAAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 540

Query: 181 CARMGPHPNXXXXXXX--XXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
           CARMGP PN                         GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 541 CARMGPPPNAIKSCPQPPSAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 720

Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
           HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 721 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 900

Query: 299 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 358
           LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN
Sbjct: 901 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 1080

Query: 359 LSERQVTIWFQNRRVKEKKVINKLKTTS 386
           LSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1081LSERQVTIWFQNRRVKEKKVINKLKTTS 1164
>gb|AY030050.1| Gallus gallus homeo box A13 (HOXA13) mRNA, complete cds
          Length = 921

 Score =  332 bits (851), Expect = 3e-89
 Identities = 168/218 (77%), Positives = 178/218 (81%)
 Frame = +1

Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
           LPYGYFGSGYYPC RM  H                           + EEF+SRAKEFAF
Sbjct: 250 LPYGYFGSGYYPC-RMTHH-----NAIKSCAQPASTFADKYMDTSVSGEEFTSRAKEFAF 411

Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
           Y QGYAAGPY   QPVPGYLD+PVVP +GGPGE RH+ L LPM+SYQPWA+ NGWNGQ+Y
Sbjct: 412 Y-QGYAAGPY---QPVPGYLDVPVVPTIGGPGEPRHDSL-LPMDSYQPWAITNGWNGQVY 576

Query: 289 CPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKD 348
           CPKEQ+QPPHLWKSTLPDVVSHPSDA+SYRRGRKKRVPYTKVQLKELEREYATNKFITKD
Sbjct: 577 CPKEQSQPPHLWKSTLPDVVSHPSDANSYRRGRKKRVPYTKVQLKELEREYATNKFITKD 756

Query: 349 KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 757 KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 870
>gb|U59322.1|MMU59322 Mus musculus transcription factor HOXA13 (Hoxa13) gene, complete
           cds
          Length = 2280

 Score =  330 bits (846), Expect = 1e-88
 Identities = 159/305 (52%), Positives = 159/305 (52%)
 Frame = +1

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 355 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 534

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 535 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAAAAYSSAPGEAPPSAAAAA 714

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 715 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 894

Query: 181 CARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHH 240
           CARMGPHPN                       GPAAEEFSSRAKEFAFYHQGYAAGPYHH
Sbjct: 895 CARMGPHPNAIKSCAQPASAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHH 1074

Query: 241 HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 300
           HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW
Sbjct: 1075HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 1254

Query: 301 KSTLP 305
           KSTLP
Sbjct: 1255KSTLP 1269
 Score =  163 bits (412), Expect = 3e-38
 Identities = 82/83 (98%), Positives = 82/83 (98%)
 Frame = +1

Query: 304  LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
            L DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 1978 LTDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 2157

Query: 364  VTIWFQNRRVKEKKVINKLKTTS 386
            VTIWFQNRRVKEKKVINKLKTTS
Sbjct: 2158 VTIWFQNRRVKEKKVINKLKTTS 2226
>gb|AC004080.2| Homo sapiens chromosome 7 clone RP1-170O19, complete sequence
          Length = 129355

 Score =  323 bits (828), Expect = 2e-86
 Identities = 157/307 (51%), Positives = 158/307 (51%), Gaps = 2/307 (0%)
 Frame = -1

Query: 1     MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
             MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 73447 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 73268

Query: 61    XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                     NQCRNLMAH                           
Sbjct: 73267 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 73088

Query: 121   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                             LPYGYFGSGYYP
Sbjct: 73087 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 72908

Query: 181   CARMGPHPNXXXXXX--XXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
             CARMGPHPN                         GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 72907 CARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 72728

Query: 239   HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
             HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 72727 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 72548

Query: 299   LWKSTLP 305
             LWKSTLP
Sbjct: 72547 LWKSTLP 72527
 Score =  162 bits (410), Expect = 5e-38
 Identities = 82/83 (98%), Positives = 82/83 (98%)
 Frame = -3

Query: 304   LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
             L DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 71819 LLDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 71640

Query: 364   VTIWFQNRRVKEKKVINKLKTTS 386
             VTIWFQNRRVKEKKVINKLKTTS
Sbjct: 71639 VTIWFQNRRVKEKKVINKLKTTS 71571
 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 37/67 (55%), Positives = 52/67 (77%)
 Frame = -3

Query: 312   SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
             S ++  +R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNR
Sbjct: 56411 SPSTGGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 56232

Query: 372   RVKEKKV 378
             R+KEKK+
Sbjct: 56231 RMKEKKI 56211
 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = -2

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 37182 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 37003

Query: 378   V 378
             +
Sbjct: 37002 I 37000
 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = -1

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 45502 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 45323

Query: 378   V 378
             +
Sbjct: 45322 M 45320
 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 39/93 (41%), Positives = 57/93 (60%), Gaps = 2/93 (2%)
 Frame = -2

Query: 296   PPHLWKSTLPDVVSHPSDASSYR--RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
             P  LWK+ +    +  S A +     G++ R  YT+ Q  ELE+E+  N+++T+ +R  I
Sbjct: 15513 PGGLWKTGVGG*TADFSIADNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEI 15334

Query: 354   SATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
             +    LSERQ+ IWFQNRR+K KK  NKLK+ S
Sbjct: 15333 AHALCLSERQIKIWFQNRRMKWKK-DNKLKSMS 15238
 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 13/97 (13%)
 Frame = -3

Query: 294  TQPPHL--------WKSTLPDVVSHPSDAS---SYRRGRKKR--VPYTKVQLKELEREYA 340
            + PPHL        ++S L  ++   S  S   SY  G  KR    YT+ Q+ ELE+E+ 
Sbjct: 3032 SSPPHLLSPPPFPLFRSLLLGLLFRGSGFSVNPSYNGGEPKRSRTAYTRQQVLELEKEFH 2853

Query: 341  TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             N+++T+ +R  I+ T  LSERQV IWFQNRR+K KK
Sbjct: 2852 FNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 2742
 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 31/63 (49%), Positives = 44/63 (69%)
 Frame = -1

Query: 320   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
             GR+ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK  
Sbjct: 19267 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE- 19091

Query: 380   NKL 382
             NKL
Sbjct: 19090 NKL 19082
 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 26/57 (45%), Positives = 40/57 (69%)
 Frame = -2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             ++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK
Sbjct: 28581 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 28411
>gb|U82827.1|HSU82827 Human transcription factor HOXA13 (HOXA13) gene, complete cds
          Length = 2014

 Score =  318 bits (816), Expect = 4e-85
 Identities = 156/307 (50%), Positives = 157/307 (50%), Gaps = 2/307 (0%)
 Frame = +1

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 109 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 288

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 289 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 468

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 469 AAAAAAAAAAAAASSSGGPGPAGPAAAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 648

Query: 181 CARMGPHPNXXXXXXX--XXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
           CARMGP PN                         GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 649 CARMGPPPNAIKSCPQPPSAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 828

Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
           HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 829 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 1008

Query: 299 LWKSTLP 305
           LWKSTLP
Sbjct: 1009LWKSTLP 1029
 Score =  162 bits (410), Expect = 5e-38
 Identities = 82/83 (98%), Positives = 82/83 (98%)
 Frame = +2

Query: 304  LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
            L DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 1736 LLDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 1915

Query: 364  VTIWFQNRRVKEKKVINKLKTTS 386
            VTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1916 VTIWFQNRRVKEKKVINKLKTTS 1984
>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence
          Length = 128411

 Score =  236 bits (603), Expect = 2e-60
 Identities = 141/264 (53%), Positives = 161/264 (60%), Gaps = 46/264 (17%)
 Frame = -3

Query: 169    LPYGYFGSG-YYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAA---EEF-SSRA 223
              + YGYFG G YYPC RM  H                           +A   E++ SSRA
Sbjct: 104568 ISYGYFGGGGYYPC-RMSHHHGSGGGVKTCAQSPASGSPYGEKYMDTSASTGEDYTSSRA 104392

Query: 224    KEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP-NG 282
              KEFA Y   YA+ PY   QPVP YLD+PVV  + GP E RHE L LPMESYQPWA+  +G
Sbjct: 104391 KEFALY-SSYASSPY---QPVPSYLDVPVVQAISGPSEPRHESL-LPMESYQPWAITTSG 104227

Query: 283    WNGQMYCPKEQTQPPHLWKSTLP------------------------------------- 305
              WNGQ+YC KEQ Q  ++WKS++P                                     
Sbjct: 104226 WNGQVYCTKEQQQTGNVWKSSIPGKFILRIAKRKKIHINNKLRRYVHLSLNPFNIYVIMN 104047

Query: 306    --DVVSHP-SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER 362
                + VSH  +D SS+RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNLSER
Sbjct: 104046 SIESVSHGGADGSSFRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAQTNLSER 103867

Query: 363    QVTIWFQNRRVKEKKVINKLKTTS 386
              QVTIWFQNRRVKEKKV+NKLK++S
Sbjct: 103866 QVTIWFQNRRVKEKKVVNKLKSSS 103795
 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 36/60 (60%), Positives = 48/60 (80%)
 Frame = -1

Query: 319   RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
             R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 95822 RFRKKRCPYTKFQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 95643
 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 36/64 (56%), Positives = 48/64 (74%)
 Frame = -2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
             RKKR PYTK Q+ ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK  N
Sbjct: 83443 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK-FN 83267

Query: 381   KLKT 384
             K +T
Sbjct: 83266 KNET 83255
 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 33/65 (50%), Positives = 47/65 (71%)
 Frame = -2

Query: 320   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
             G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+ T  LSERQ+ IWFQNRR+K KK  
Sbjct: 73786 GKRPRTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK-D 73610

Query: 380   NKLKT 384
             NKLK+
Sbjct: 73609 NKLKS 73595
 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
 Frame = -2

Query: 315   SSYRRG--RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRR 372
             +SY  G  ++ R  YT+ Q  ELE+E+  N+++T+ +R  I+ T  LSERQV IWFQNRR
Sbjct: 65905 ASYSGGVPKRSRTAYTRQQALELEKEFHFNRYLTRRRRVEIAHTMCLSERQVKIWFQNRR 65726

Query: 373   VKEKK 377
             +K KK
Sbjct: 65725 MKWKK 65711
 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 30/69 (43%), Positives = 45/69 (64%)
 Frame = -1

Query: 309   SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
             S P  A+S    ++ R  YT  QL ELE+E+  N+++ + +R  ++   NL+ERQ+ IWF
Sbjct: 55607 SPPGSAAS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 55440

Query: 369   QNRRVKEKK 377
             QNRR+K KK
Sbjct: 55439 QNRRMKYKK 55413
 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 27/54 (50%), Positives = 40/54 (74%)
 Frame = -2

Query: 324   RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R  ++  QL ELE+E+  NK++T+ +R  I+A+  L+E QV IWFQNRR+K+KK
Sbjct: 47275 RTNFSTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKK 47114
 Score = 52.0 bits (123), Expect = 9e-05
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = -3

Query: 1      MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME 36
              MT S+LL PRWI+P VMFLYDNGGGL  D+ +KNME
Sbjct: 104841 MTTSLLLRPRWIDP-VMFLYDNGGGL--DDTSKNME 104743
 Score = 38.9 bits (89), Expect = 0.80
 Identities = 21/67 (31%), Positives = 36/67 (53%)
 Frame = -2

Query: 311   PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 370
             P    S RRG  +R+    +    + +EY   +++++ +R  I     L+ER V +WF N
Sbjct: 51235 PYSGLSCRRGGSRRLRTAPLNSFWIRKEYHY-RYLSRPRRVEIVTLLELAER*VKVWF*N 51059

Query: 371   RRVKEKK 377
             RR+K K+
Sbjct: 51058 RRIKHKR 51038
>gb|AF255676.1|AF255676 Homo sapiens homeoprotein C13 (HOXC13) mRNA, complete cds
          Length = 2402

 Score =  228 bits (582), Expect = 5e-58
 Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
 Frame = +2

Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
           L YGY FG  YY C R+  + N                           ++ SSRAKEFA
Sbjct: 470 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 634

Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
           FY   +A+     +Q +PGYLD+ VVPG+ G  E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 635 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 796

Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           YC KEQ+Q  HLWKS  PDVV    + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 797 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 976

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
           +KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 977 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1084
>ref|NM_017410.1| Homo sapiens homeo box C13 (HOXC13), mRNA
          Length = 2402

 Score =  228 bits (582), Expect = 5e-58
 Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
 Frame = +2

Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
           L YGY FG  YY C R+  + N                           ++ SSRAKEFA
Sbjct: 470 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 634

Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
           FY   +A+     +Q +PGYLD+ VVPG+ G  E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 635 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 796

Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           YC KEQ+Q  HLWKS  PDVV    + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 797 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 976

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
           +KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 977 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1084
>gb|AF193796.1|AF193796 Mus musculus homeodomain protein (Hoxc13) mRNA, complete cds
          Length = 2451

 Score =  228 bits (582), Expect = 5e-58
 Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
 Frame = +1

Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
           L YGY FG  YY C R+  + N                           ++ SSRAKEFA
Sbjct: 406 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 570

Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
           FY   +A+     +Q +PGYLD+ VVPG+ G  E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 571 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 732

Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           YC KEQ+Q  HLWKS  PDVV    + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 733 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 912

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
           +KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 913 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1020
>ref|XM_006804.4| Homo sapiens homeo box C13 (HOXC13), mRNA
          Length = 2395

 Score =  228 bits (582), Expect = 5e-58
 Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
 Frame = +2

Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
           L YGY FG  YY C R+  + N                           ++ SSRAKEFA
Sbjct: 470 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 634

Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
           FY   +A+     +Q +PGYLD+ VVPG+ G  E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 635 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 796

Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           YC KEQ+Q  HLWKS  PDVV    + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 797 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 976

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
           +KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 977 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1084
>gb|AF263466.2|AF263466 Homo sapiens HOXC13 (HOXC13) mRNA, complete cds
          Length = 2391

 Score =  228 bits (582), Expect = 5e-58
 Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
 Frame = +1

Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
           L YGY FG  YY C R+  + N                           ++ SSRAKEFA
Sbjct: 427 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 591

Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
           FY   +A+     +Q +PGYLD+ VVPG+ G  E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 592 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 753

Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           YC KEQ+Q  HLWKS  PDVV    + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 754 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 933

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
           +KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 934 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1041
>gb|BC002754.1|BC002754 Homo sapiens, homeo box C13, clone MGC:3334 IMAGE:3629265, mRNA,
           complete cds
          Length = 2315

 Score =  228 bits (582), Expect = 5e-58
 Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
 Frame = +3

Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
           L YGY FG  YY C R+  + N                           ++ SSRAKEFA
Sbjct: 417 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 581

Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
           FY   +A+     +Q +PGYLD+ VVPG+ G  E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 582 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 743

Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           YC KEQ+Q  HLWKS  PDVV    + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 744 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 923

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
           +KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 924 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1031
>dbj|AK024027.1|AK024027 Homo sapiens cDNA FLJ13965 fis, clone Y79AA1001391, moderately
           similar to HOMEOBOX PROTEIN HOX-A13
          Length = 1879

 Score =  228 bits (580), Expect = 9e-58
 Identities = 114/167 (68%), Positives = 134/167 (79%)
 Frame = +3

Query: 217 EEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQP 276
           ++ SSRAKEFAFY   +A+     +Q +PGYLD+ VVPG+ G  E RH+ L +P+E YQ 
Sbjct: 84  DDLSSRAKEFAFY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQH 245

Query: 277 WALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELE 336
           WAL NGW+ Q+YC KEQ+Q  HLWKS  PDVV    + SSYRRGRKKRVPYTKVQLKELE
Sbjct: 246 WALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELE 425

Query: 337 REYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
           +EYA +KFITK+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 426 KEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 566
>ref|NM_008267.1| Mus musculus homeo box B13 (Hoxb13), mRNA
          Length = 861

 Score =  220 bits (560), Expect = 2e-55
 Identities = 122/223 (54%), Positives = 143/223 (63%), Gaps = 5/223 (2%)
 Frame = +1

Query: 169 LPYGYFGSGYYPC--ARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPA-AEEFSSRAKE 225
           +PYGYFG GYY C  +R    P                         PA  EE+ SR  E
Sbjct: 235 VPYGYFGGGYYSCRVSRSSLKPCAQTAALATYPSET-----------PAPGEEYPSRPTE 381

Query: 226 FAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNG 285
           FAFY  GY  GPY   QP+  YLD+ VV  LG PGE RH+ L LP++SYQPWAL  GWN 
Sbjct: 382 FAFY-PGYP-GPY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQPWALAGGWNS 543

Query: 286 QMYCPKEQTQPPHLWKSTL--PDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNK 343
           QM C  EQ  P   WK+    P V   P D  ++RRGRKKR+PY+K QL+ELEREYA NK
Sbjct: 544 QMCCQGEQNPPGPFWKAAFAEPSVQHPPPDGCAFRRGRKKRIPYSKGQLRELEREYAANK 723

Query: 344 FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           FITKDKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+KT++
Sbjct: 724 FITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKTST 852
>gb|U57051.1|MMU57051 Mus musculus Hoxb-13 mRNA, complete cds
          Length = 861

 Score =  220 bits (560), Expect = 2e-55
 Identities = 122/223 (54%), Positives = 143/223 (63%), Gaps = 5/223 (2%)
 Frame = +1

Query: 169 LPYGYFGSGYYPC--ARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPA-AEEFSSRAKE 225
           +PYGYFG GYY C  +R    P                         PA  EE+ SR  E
Sbjct: 235 VPYGYFGGGYYSCRVSRSSLKPCAQTAALATYPSET-----------PAPGEEYPSRPTE 381

Query: 226 FAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNG 285
           FAFY  GY  GPY   QP+  YLD+ VV  LG PGE RH+ L LP++SYQPWAL  GWN 
Sbjct: 382 FAFY-PGYP-GPY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQPWALAGGWNS 543

Query: 286 QMYCPKEQTQPPHLWKSTL--PDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNK 343
           QM C  EQ  P   WK+    P V   P D  ++RRGRKKR+PY+K QL+ELEREYA NK
Sbjct: 544 QMCCQGEQNPPGPFWKAAFAEPSVQHPPPDGCAFRRGRKKRIPYSKGQLRELEREYAANK 723

Query: 344 FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           FITKDKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+KT++
Sbjct: 724 FITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKTST 852
>gb|BC013639.1|BC013639 Mus musculus, homeo box B13, clone MGC:18675 IMAGE:4207456, mRNA,
           complete cds
          Length = 1344

 Score =  220 bits (560), Expect = 2e-55
 Identities = 122/223 (54%), Positives = 143/223 (63%), Gaps = 5/223 (2%)
 Frame = +2

Query: 169 LPYGYFGSGYYPC--ARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPA-AEEFSSRAKE 225
           +PYGYFG GYY C  +R    P                         PA  EE+ SR  E
Sbjct: 317 VPYGYFGGGYYSCRVSRSSLKPCAQTAALATYPSET-----------PAPGEEYPSRPTE 463

Query: 226 FAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNG 285
           FAFY  GY  GPY   QP+  YLD+ VV  LG PGE RH+ L LP++SYQPWAL  GWN 
Sbjct: 464 FAFY-PGYP-GPY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQPWALAGGWNS 625

Query: 286 QMYCPKEQTQPPHLWKSTL--PDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNK 343
           QM C  EQ  P   WK+    P V   P D  ++RRGRKKR+PY+K QL+ELEREYA NK
Sbjct: 626 QMCCQGEQNPPGPFWKAAFAEPSVQHPPPDGCAFRRGRKKRIPYSKGQLRELEREYAANK 805

Query: 344 FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           FITKDKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+KT++
Sbjct: 806 FITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKTST 934
>gb|BC007092.1|BC007092 Homo sapiens, homeo box B13, clone MGC:14711 IMAGE:4250486, mRNA,
           complete cds
          Length = 1356

 Score =  216 bits (551), Expect = 2e-54
 Identities = 117/219 (53%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
 Frame = +3

Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
           +PYGYFG GYY C                                 A EE+ SR  EFAF
Sbjct: 318 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 473

Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
           Y  GY  G Y   QP+  YLD+ VV  LG PGE RH+ L LP++SYQ WAL  GWN QM 
Sbjct: 474 Y-PGYP-GTY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 635

Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           C  EQ  P   WK+   D    HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 636 CQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITK 815

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 816 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 932
>gb|U57052.1|HSU57052 Human Hoxb-13 mRNA, complete cds
          Length = 1026

 Score =  216 bits (551), Expect = 2e-54
 Identities = 117/219 (53%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
 Frame = +1

Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
           +PYGYFG GYY C                                 A EE+ SR  EFAF
Sbjct: 286 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 441

Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
           Y  GY  G YH    +  YLD+ VV  LG PGE RH+ L LP++SYQ WAL  GWN QM 
Sbjct: 442 Y-PGYP-GTYH---AMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 603

Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           C  EQ  P   WK+   D    HP DAS++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 604 CQGEQNPPGPFWKAAFADSSGQHPPDASAFRRGRKKRIPYSKGQLRELEREYAANKFITK 783

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 784 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 900
>ref|XM_030437.1| Homo sapiens homeo box B13 (HOXB13), mRNA
          Length = 1269

 Score =  216 bits (551), Expect = 2e-54
 Identities = 117/219 (53%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
 Frame = +2

Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
           +PYGYFG GYY C                                 A EE+ SR  EFAF
Sbjct: 362 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 517

Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
           Y  GY  G Y   QP+  YLD+ VV  LG PGE RH+ L LP++SYQ WAL  GWN QM 
Sbjct: 518 Y-PGYP-GTY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 679

Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           C  EQ  P   WK+   D    HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 680 CQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITK 859

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 860 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 976
>gb|U81599.1|HSU81599 Homo sapiens homeodomain protein HOXB13 mRNA, complete cds
          Length = 1316

 Score =  214 bits (546), Expect = 8e-54
 Identities = 116/219 (52%), Positives = 136/219 (61%), Gaps = 1/219 (0%)
 Frame = +3

Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
           +PYGYFG GYY C                                 A EE+ SR  EFAF
Sbjct: 408 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 563

Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
           Y  GY  G YH    +  YLD+ VV  LG PGE RH+ L LP++SYQ WAL  GWN QM 
Sbjct: 564 Y-PGYP-GTYH---AMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 725

Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           C  EQ  P   WK+   D    HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 726 CQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITK 905

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 906 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 1022
>ref|NM_006361.2| Homo sapiens homeo box B13 (HOXB13), mRNA
          Length = 1270

 Score =  214 bits (546), Expect = 8e-54
 Identities = 116/219 (52%), Positives = 136/219 (61%), Gaps = 1/219 (0%)
 Frame = +2

Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
           +PYGYFG GYY C                                 A EE+ SR  EFAF
Sbjct: 362 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 517

Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
           Y  GY  G YH    +  YLD+ VV  LG PGE RH+ L LP++SYQ WAL  GWN QM 
Sbjct: 518 Y-PGYP-GTYH---AMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 679

Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
           C  EQ  P   WK+   D    HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 680 CQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITK 859

Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 860 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 976
>ref|NM_000523.1| Homo sapiens homeo box D13 (HOXD13), mRNA
          Length = 1147

 Score =  209 bits (532), Expect = 3e-52
 Identities = 121/226 (53%), Positives = 137/226 (60%), Gaps = 9/226 (3%)
 Frame = +1

Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
           L YGY FG+GYY C     +G   N                              A E  
Sbjct: 460 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 639

Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
           +RAKE +FY QGY + PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 640 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 792

Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
           NGWN Q+YC K+Q Q  H WKS+ P DV  +  D   YRRGRKKRVPYTK+QLKELE EY
Sbjct: 793 NGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEY 972

Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
           A NKFI KDKRRRISA TNLSERQVTIWFQNRRVK+KK+++KLK T
Sbjct: 973 AINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDT 1110
>gb|L09550.1|CHKHOXD13A Chicken homeobox protein hoxd13 mRNA, complete cds
          Length = 1964

 Score =  209 bits (532), Expect = 3e-52
 Identities = 121/224 (54%), Positives = 137/224 (61%), Gaps = 9/224 (4%)
 Frame = +2

Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
           L YGY FG+GYY C     +G   N                              A E S
Sbjct: 257 LGYGYHFGNGYYSCRMSNGVGIQQNALKSPPHASIGGFPVEKYMDVSSLTSTSVPANEVS 436

Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
           +RAKE + Y QGY   PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 437 TRAKEVSSY-QGYT-NPYQH---VPGYIDMV---STFGSGEPRHETY-ISMEGYQSWTLA 589

Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
           NGWNGQ+YC K+QTQ  H WKS+ P DV  +  +   YRRGRKKRVPYTK+QLKELE EY
Sbjct: 590 NGWNGQVYCAKDQTQSSHFWKSSFPGDVALNQPEMCVYRRGRKKRVPYTKLQLKELENEY 769

Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
           A NKFI KDKRRRISA TNLSERQVTIWFQNRRVK+KK+++KLK
Sbjct: 770 AINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLK 901
>gb|U20942.1|AMU20942 Ambystoma mexicanum homeobox protein Hox-A13 mRNA, partial cds
          Length = 432

 Score =  209 bits (531), Expect = 4e-52
 Identities = 100/106 (94%), Positives = 103/106 (96%)
 Frame = +1

Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYA 340
           NGWNGQ+YC KEQ QPPHLWKS+LPDVV HPSDA+SYRRGRKKRVPYTKVQLKELEREYA
Sbjct: 4   NGWNGQVYCSKEQGQPPHLWKSSLPDVVWHPSDANSYRRGRKKRVPYTKVQLKELEREYA 183

Query: 341 TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 184 TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 321
>ref|NM_008275.1| Mus musculus homeo box D13 (Hoxd13), mRNA
          Length = 1020

 Score =  207 bits (528), Expect = 1e-51
 Identities = 120/226 (53%), Positives = 136/226 (60%), Gaps = 9/226 (3%)
 Frame = +1

Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
           L YGY FG+GYY C     +G   N                                E  
Sbjct: 361 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPTNEVP 540

Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
           +RAKE +FY QGY + PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 541 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 693

Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
           NGWN Q+YC K+Q Q  H WKS+ P DV  +  D   YRRGRKKRVPYTK+QLKELE EY
Sbjct: 694 NGWNSQVYCAKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEY 873

Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
           A NKFI KDKRRRISA TNLSERQVTIWFQNRRVK+KK+++KLK T
Sbjct: 874 AINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDT 1011
>emb|X99291.1|MMHOXD13 M.musculus hoxd-13 gene
          Length = 1020

 Score =  207 bits (528), Expect = 1e-51
 Identities = 120/226 (53%), Positives = 136/226 (60%), Gaps = 9/226 (3%)
 Frame = +1

Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
           L YGY FG+GYY C     +G   N                                E  
Sbjct: 361 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPTNEVP 540

Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
           +RAKE +FY QGY + PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 541 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 693

Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
           NGWN Q+YC K+Q Q  H WKS+ P DV  +  D   YRRGRKKRVPYTK+QLKELE EY
Sbjct: 694 NGWNSQVYCAKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEY 873

Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
           A NKFI KDKRRRISA TNLSERQVTIWFQNRRVK+KK+++KLK T
Sbjct: 874 AINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDT 1011
>gb|AF298184.1|AF298184 Ambystoma mexicanum homeodomain protein Hoxb13 (Hoxb13) mRNA,
           partial cds
          Length = 1360

 Score =  190 bits (482), Expect = 2e-46
 Identities = 110/214 (51%), Positives = 132/214 (61%), Gaps = 1/214 (0%)
 Frame = +2

Query: 174 FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGY 233
           FG GYY C R+   P                          A EE  +R KE AFY  GY
Sbjct: 2   FGGGYYSC-RVARTP-------LKACSLSGYPAEKYTDTAVAVEE--ARPKELAFY-PGY 148

Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGG-PGESRHEPLGLPMESYQPWALPNGWNGQMYCPKE 292
           A GPY   QPV  YLD+ VV  LGG PGE       LP E YQPWAL  GWN Q+ C K+
Sbjct: 149 A-GPY---QPVASYLDLSVVQSLGGGPGEP------LPAEPYQPWALGGGWNNQVCCSKD 298

Query: 293 QTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRR 352
            +     WK+ LPD   HP + + +RR RKKRVPY+K QL+ELE+EYA++KFITKD+RR+
Sbjct: 299 PSPAGAPWKTQLPDHGGHPQEGAPFRRDRKKRVPYSKGQLRELEKEYASSKFITKDRRRQ 478

Query: 353 ISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           I+  TNLSERQ+TIWFQNRRVKEKKV +K+K +S
Sbjct: 479 IATATNLSERQITIWFQNRRVKEKKVFSKMKPSS 580
>emb|X87752.1|DRHOXD13G D.rerio Hoxd-13 gene
          Length = 771

 Score =  162 bits (411), Expect = 4e-38
 Identities = 91/160 (56%), Positives = 111/160 (68%)
 Frame = +1

Query: 218 EFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPW 277
           E SS  KEFAFY QG  AG Y     +P ++D+PVV      G+ RHE   L ME +Q W
Sbjct: 295 EASSWLKEFAFY-QG-CAGSYPR---IPAFIDLPVVQR-AMMGDRRHETC-LTMEGHQHW 453

Query: 278 ALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELER 337
              N  + Q+YC ++QT+ PH+WK   P +    + AS  +RGRKKRVPYTK QLKELER
Sbjct: 454 DWSNNCSSQLYCSQDQTRSPHIWK---PSLTEEAAAASFCQRGRKKRVPYTKFQLKELER 624

Query: 338 EYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           EY T KFITK+ RRRI+++TNLSERQVTIWFQNRRVK+KK
Sbjct: 625 EYNTTKFITKENRRRIASSTNLSERQVTIWFQNRRVKDKK 744
>emb|AJ314743.1|XLA314743 Xenopus laevis partial mRNA for homeobox protein (hoxa13 gene)
          Length = 390

 Score =  148 bits (374), Expect = 7e-34
 Identities = 79/142 (55%), Positives = 88/142 (61%)
 Frame = +1

Query: 173 YFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQG 232
           YFGSGYYPC RM  H                         G A E+F+SR KEFAFY Q 
Sbjct: 1   YFGSGYYPC-RMSHHNGIKSCSQPSSFAEKYMDTS-----GSAGEDFASRPKEFAFY-QS 159

Query: 233 YAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKE 292
           Y  GPY   QPVP YLDMPVV  +G  GE RHEPL LPM+ YQ W + NGWNGQ+YC K+
Sbjct: 160 YPPGPY---QPVPSYLDMPVVSTIGSTGEPRHEPL-LPMDGYQAWPITNGWNGQVYCAKD 327

Query: 293 QTQPPHLWKSTLPDVVSHPSDA 314
           Q QP HLWKS+LPDVV H SD+
Sbjct: 328 QAQPTHLWKSSLPDVV-HQSDS 390
>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence
          Length = 203106

 Score =  137 bits (345), Expect = 2e-30
 Identities = 72/97 (74%), Positives = 82/97 (84%), Gaps = 3/97 (3%)
 Frame = +1

Query: 290   PKEQTQPPHL--WKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 346
             P   ++PPHL  +  +LP DVV    + SSYRRGRKKRVPYTKVQLKELE+EYA +KFIT
Sbjct: 29938 PVALSRPPHLLLYAFSLPLDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFIT 30117

Query: 347   KDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
             K+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 30118 KEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 30228
 Score =  102 bits (253), Expect = 8e-20
 Identities = 60/138 (43%), Positives = 76/138 (54%), Gaps = 1/138 (0%)
 Frame = +3

Query: 169   LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
             L YGY FG  YY C R+  + N                           ++ SSRAKEFA
Sbjct: 24363 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 24527

Query: 228   FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
             FY   +A+     +Q +PGYLD+ VVPG+ G  E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 24528 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 24689

Query: 288   YCPKEQTQPPHLWKSTLP 305
             YC KEQ+Q  HLWKS  P
Sbjct: 24690 YCSKEQSQSAHLWKSPFP 24743
 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 35/63 (55%), Positives = 50/63 (78%)
 Frame = +1

Query: 317   YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 376
             + R RKKR PY+K+QL ELE E+  N+FIT+ +RR +S   NLS++QV IWFQNRR+K+K
Sbjct: 41125 HSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKK 41304

Query: 377   KVI 379
             +++
Sbjct: 41305 RLL 41313
 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 39/68 (57%), Positives = 51/68 (74%)
 Frame = +2

Query: 311   PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 370
             P DA    R RKKR PY+K Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQN
Sbjct: 59288 PPDAP---RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQN 59458

Query: 371   RRVKEKKV 378
             RR+KEKK+
Sbjct: 59459 RRMKEKKL 59482
 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +2

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 86747 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 86926

Query: 378   VINKLKT 384
              +NK KT
Sbjct: 86927 -MNKEKT 86944
 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +3

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS T NL++RQV IWFQNRR+K KK
Sbjct: 73668 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 73847

Query: 378   V 378
             +
Sbjct: 73848 M 73850
 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 27/58 (46%), Positives = 41/58 (70%)
 Frame = +3

Query: 320    GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK
Sbjct: 118059 GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 118232
 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 27/57 (47%), Positives = 42/57 (73%)
 Frame = +3

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              ++ R  YT+ Q+ ELE+E+  N+++T+ +R  I+ +  LSERQ+ IWFQNRR+K KK
Sbjct: 138483 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK 138653
 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 30/63 (47%), Positives = 41/63 (64%)
 Frame = +3

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
             R  R  Y++ Q  ELE+E+  N ++T+ +R  +S    L+ERQV IWFQNRR+K KK  N
Sbjct: 95397 RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN 95576

Query: 381   KLK 383
             K K
Sbjct: 95577 KDK 95585
 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 29/66 (43%), Positives = 43/66 (64%)
 Frame = +3

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
              R+ R  Y++ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK  N
Sbjct: 113580 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN 113759

Query: 381    KLKTTS 386
                 T S
Sbjct: 113760 LTSTLS 113777
>gb|AC107364.1| Danio rerio, clone -10O19, complete sequence
          Length = 96880

 Score =  136 bits (343), Expect = 3e-30
 Identities = 72/142 (50%), Positives = 85/142 (59%)
 Frame = +2

Query: 169   LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
             LPYGYFG  YYPC RM                              + EEF SRAKEFAF
Sbjct: 59432 LPYGYFGGSYYPC-RMPK-----------SCTQPTTYGEKYMDTSVSGEEFPSRAKEFAF 59575

Query: 229   YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
             Y QGY++GPY   QPVP YLD+PVVP L  P E RHE L LP+E+YQPWA+ NGW+  +Y
Sbjct: 59576 Y-QGYSSGPY---QPVPSYLDVPVVPALSAPSEPRHESL-LPVETYQPWAITNGWSSPVY 59740

Query: 289   CPKEQTQPPHLWKSTLPDVVSH 310
             CPK+QTQ   LWKS++   + H
Sbjct: 59741 CPKDQTQSSTLWKSSIQGKMLH 59806
 Score =  131 bits (329), Expect = 1e-28
 Identities = 65/75 (86%), Positives = 69/75 (91%)
 Frame = +2

Query: 312   SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
             +D +S RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNL+ERQVTIWFQNR
Sbjct: 60194 TDGASVRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAHTNLTERQVTIWFQNR 60373

Query: 372   RVKEKKVINKLKTTS 386
             RVKEKKV+NK K  S
Sbjct: 60374 RVKEKKVVNKYKGIS 60418
 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 35/61 (57%), Positives = 49/61 (79%)
 Frame = +2

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             ++ RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNRR+KEKK
Sbjct: 69551 QKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 69730

Query: 378   V 378
             +
Sbjct: 69731 L 69733
 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +3

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 75501 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 75680

Query: 378   V 378
             +
Sbjct: 75681 M 75683
 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)
 Frame = +1

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             RKKR PYTK Q  ELE+E+  N ++++D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 80122 RKKRCPYTKHQTLELEKEFLFNMYLSRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 80292
 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R+ R  YT  QL ELE+E+  NK++ + +R  I+A  +L+ERQV +WFQNRR+K K+
Sbjct: 91823 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 91993
 Score = 47.4 bits (111), Expect = 0.002
 Identities = 24/36 (66%), Positives = 29/36 (79%)
 Frame = +2

Query: 1     MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME 36
             MTAS+LLH RWI+P VMFLYDNG     D+++KNME
Sbjct: 59165 MTASLLLHSRWIDP-VMFLYDNG----LDDMSKNME 59257
>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence
          Length = 171949

 Score =  131 bits (330), Expect = 9e-29
 Identities = 69/89 (77%), Positives = 75/89 (83%), Gaps = 4/89 (4%)
 Frame = +1

Query: 299   LWKSTLP----DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
             L  S LP    DVV    + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK+KRRRIS
Sbjct: 82570 LTSSRLPYLPADVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRIS 82749

Query: 355   ATTNLSERQVTIWFQNRRVKEKKVINKLK 383
             ATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 82750 ATTNLSERQVTIWFQNRRVKEKKVVSKSK 82836
 Score =  102 bits (253), Expect = 8e-20
 Identities = 60/138 (43%), Positives = 76/138 (54%), Gaps = 1/138 (0%)
 Frame = +2

Query: 169   LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
             L YGY FG  YY C R+  + N                           ++ SSRAKEFA
Sbjct: 76865 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 77029

Query: 228   FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
             FY   +A+     +Q +PGYLD+ VVPG+ G  E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 77030 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 77191

Query: 288   YCPKEQTQPPHLWKSTLP 305
             YC KEQ+Q  HLWKS  P
Sbjct: 77192 YCSKEQSQSAHLWKSPFP 77245
 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
 Frame = +1

Query: 296   PPHLWKSTLPDVVSHPSDASSY---RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRR 352
             P  LW +  P +  HP  A  Y    R RKKR PY+K+QL ELE E+  N+FIT+ +RR 
Sbjct: 93889 PLILWPT--PAIHLHPG-APWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRE 94059

Query: 353   ISATTNLSERQVTIWFQNRRVKEKKVI 379
             +S   NLS++QV IWFQNRR+K+K+++
Sbjct: 94060 LSDRLNLSDQQVKIWFQNRRMKKKRLL 94140
 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 39/68 (57%), Positives = 51/68 (74%)
 Frame = +2

Query: 311    PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 370
              P DA    R RKKR PY+K Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQN
Sbjct: 112778 PPDAP---RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQN 112948

Query: 371    RRVKEKKV 378
              RR+KEKK+
Sbjct: 112949 RRMKEKKL 112972
 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +2

Query: 318    RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 140063 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 140242

Query: 378    VINKLKT 384
               +NK KT
Sbjct: 140243 -MNKEKT 140260
 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +1

Query: 318    RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS T NL++RQV IWFQNRR+K KK
Sbjct: 126817 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 126996

Query: 378    V 378
              +
Sbjct: 126997 M 126999
 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 30/63 (47%), Positives = 41/63 (64%)
 Frame = +3

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
              R  R  Y++ Q  ELE+E+  N ++T+ +R  +S    L+ERQV IWFQNRR+K KK  N
Sbjct: 148704 RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN 148883

Query: 381    KLK 383
              K K
Sbjct: 148884 KDK 148892
 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
 Frame = +2

Query: 270    PMESYQPWALPNGWNGQMYCPKEQTQPPH---LWKSTLPDVVSHPSDASSYRRGRKKRVP 326
              P E+   W    GW GQ +  +   Q      L    +P  +     A   RRGR+    
Sbjct: 167141 PKEAVSCWP---GWEGQDFARRNSLQRTLC*LLLVCFVPGSLGVGYGADR-RRGRQI--- 167299

Query: 327    YTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
              Y++ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK  N   T S
Sbjct: 167300 YSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLS 167479
>gb|AF071242.1|AF071242 Danio rerio homeobox protein (hoxa13b) gene, complete cds
          Length = 1953

 Score =  131 bits (329), Expect = 1e-28
 Identities = 65/75 (86%), Positives = 69/75 (91%)
 Frame = +2

Query: 312  SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
            +D +S RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNL+ERQVTIWFQNR
Sbjct: 1337 TDGASVRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAHTNLTERQVTIWFQNR 1516

Query: 372  RVKEKKVINKLKTTS 386
            RVKEKKV+NK K  S
Sbjct: 1517 RVKEKKVVNKYKGIS 1561
 Score =  127 bits (318), Expect = 2e-27
 Identities = 69/142 (48%), Positives = 82/142 (57%)
 Frame = +2

Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
           LPYGYFG  YYPC RM                              + EEF SRAKEFAF
Sbjct: 575 LPYGYFGGSYYPC-RMPK-----------SCTQPTTYGEKYMDTSVSGEEFPSRAKEFAF 718

Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
           Y QGY++      QPVP YLD+PVVP L  P E RHE L LP+E+YQPWA+ NGW+  +Y
Sbjct: 719 Y-QGYSSALT---QPVPSYLDVPVVPALSAPSEPRHESL-LPVETYQPWAITNGWSSPVY 883

Query: 289 CPKEQTQPPHLWKSTLPDVVSH 310
           CPK+QTQ   LWKS++   + H
Sbjct: 884 CPKDQTQSSTLWKSSIQGKMLH 949
 Score = 47.4 bits (111), Expect = 0.002
 Identities = 24/36 (66%), Positives = 29/36 (79%)
 Frame = +2

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME 36
           MTAS+LLH RWI+P VMFLYDNG     D+++KNME
Sbjct: 308 MTASLLLHSRWIDP-VMFLYDNG----LDDMSKNME 400
>gb|AF224263.1|AF224263 Heterodontus francisci Evx2 (evx2), HoxD13 (HoxD13), HoxD12 (HoxD12),
             HoxD11 (HoxD11), HoxD10 (HoxD10), HoxD9 (HoxD9), HoxD8
             (HoxD8), and HoxD5 (HoxD5) genes, complete cds
          Length = 98786

 Score =  130 bits (326), Expect = 3e-28
 Identities = 62/78 (79%), Positives = 71/78 (90%)
 Frame = +1

Query: 306   DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
             DV+ + +D + YRRGRKKRVPYTK QLKELEREYATNKFITK+KRRRIS  TNL+ERQVT
Sbjct: 43357 DVMHNQTDINIYRRGRKKRVPYTKTQLKELEREYATNKFITKEKRRRISTATNLTERQVT 43536

Query: 366   IWFQNRRVKEKKVINKLK 383
             IWFQNRRVKEKKV++K+K
Sbjct: 43537 IWFQNRRVKEKKVVSKVK 43590
 Score =  115 bits (289), Expect = 5e-24
 Identities = 65/145 (44%), Positives = 76/145 (51%), Gaps = 5/145 (3%)
 Frame = +1

Query: 169   LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFSSRA 223
             + YGY FGS YY C  +G                                   +E S+RA
Sbjct: 42604 ISYGYHFGSSYYSCRNVGIQQTGLKSGAHASLAGYPVDKYMDVSSLTNTPVPTDEVSARA 42783

Query: 224   KEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGW 283
             KEFAFY Q Y   PY   Q V GYLD+PVVP + G GE RHE L + ME YQPW   N W
Sbjct: 42784 KEFAFY-QSYP-NPY---QRVSGYLDVPVVPTISGHGEPRHEAL-ISMEGYQPWTFANSW 42945

Query: 284   NGQMYCPKEQTQPPHLWKSTLPDVV 308
             NGQ+YCPK+QTQ PH WKS L  ++
Sbjct: 42946 NGQVYCPKDQTQTPHFWKSPLSGIM 43020
 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 37/60 (61%), Positives = 48/60 (79%)
 Frame = +1

Query: 319   RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
             R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 58579 RCRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 58758
 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 35/68 (51%), Positives = 51/68 (74%)
 Frame = +3

Query: 319   RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
             R R+KR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K++
Sbjct: 50463 RSRRKRKPYTKQQIAELENEFLANEFINRQKRKELSDRLNLSDQQVKIWFQNRRMKKKRL 50642

Query: 379   INKLKTTS 386
             + + +T S
Sbjct: 50643 VMREQTLS 50666
 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
 Frame = +2

Query: 304   LPDVVSHPSDASSYRRG-RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER 362
             LP    HP+    + R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ER
Sbjct: 75428 LPFFPDHPAINWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTER 75607

Query: 363   QVTIWFQNRRVKEKKVINKLK 383
             QV IWFQNRR+K KK +NK+K
Sbjct: 75608 QVKIWFQNRRMKMKK-MNKVK 75667
 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +3

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 69357 KSGRKKRCPYTKYQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 69536

Query: 378   V 378
             +
Sbjct: 69537 M 69539
 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 31/65 (47%), Positives = 46/65 (70%)
 Frame = +2

Query: 320   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
             G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK  
Sbjct: 93446 GKRTRTAYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK-D 93622

Query: 380   NKLKT 384
             NKLK+
Sbjct: 93623 NKLKS 93637
 Score = 62.0 bits (149), Expect = 9e-08
 Identities = 33/70 (47%), Positives = 45/70 (64%)
 Frame = +1

Query: 314   ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRV 373
             A   RRGR+    Y++ Q  ELE+E+  N ++T+ +R  +S    L+ERQV IWFQNRR+
Sbjct: 82642 APGRRRGRQT---YSRFQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRM 82812

Query: 374   KEKKVINKLK 383
             K KK  NK K
Sbjct: 82813 KWKKENNKDK 82842
 Score = 52.4 bits (124), Expect = 7e-05
 Identities = 26/50 (52%), Positives = 33/50 (66%)
 Frame = +2

Query: 315   SSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQV 364
             +S  R RKKRVPY+K Q+ ELE  Y  N+F+T + R  IS    L+ERQV
Sbjct: 34055 NSIHRQRKKRVPYSKQQIAELEMAYENNRFLTPEVRLNISFKLGLTERQV 34204
>gb|AF071241.1|AF071241 Danio rerio homeobox protein (hoxa13a) gene, partial cds
          Length = 204

 Score =  128 bits (322), Expect = 8e-28
 Identities = 63/67 (94%), Positives = 66/67 (98%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
           GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNLSERQVTIWFQNRRVKEKKV+
Sbjct: 1   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAQTNLSERQVTIWFQNRRVKEKKVV 180

Query: 380 NKLKTTS 386
           NKLK++S
Sbjct: 181 NKLKSSS 201
>gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence
          Length = 214875

 Score =  128 bits (321), Expect = 1e-27
 Identities = 63/82 (76%), Positives = 69/82 (83%)
 Frame = +1

Query: 304    LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
              L DV  +  D   YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQ
Sbjct: 106753 LGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQ 106932

Query: 364    VTIWFQNRRVKEKKVINKLKTT 385
              VTIWFQNRRVK+KK+++KLK T
Sbjct: 106933 VTIWFQNRRVKDKKIVSKLKDT 106998
 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 71/187 (37%), Positives = 85/187 (44%), Gaps = 10/187 (5%)
 Frame = +1

Query: 169    LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
              L YGY FG+GYY C     +G   N                                E  
Sbjct: 105541 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPTNEVP 105720

Query: 221    SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
              +RAKE +FY QGY + PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 105721 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 105873

Query: 281    NGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKV--QLKELERE 338
              NGWN Q+YC K+Q Q  H WKS      S P  ++  R GRKK+ PY  V   +  L R 
Sbjct: 105874 NGWNSQVYCAKDQPQGSHFWKS------SFPGRSNEKRGGRKKKSPYLGVVTYIPGLTRY 106035

Query: 339    YATNKFI 345
                  KF+
Sbjct: 106036 NPLEKFV 106056
 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 37/61 (60%), Positives = 49/61 (79%)
 Frame = +2

Query: 318    RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK
Sbjct: 120782 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 120961

Query: 378    V 378
              +
Sbjct: 120962 L 120964
 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 35/63 (55%), Positives = 48/63 (75%)
 Frame = +1

Query: 319    RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
              R RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K+V
Sbjct: 112711 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 112890

Query: 379    INK 381
              + +
Sbjct: 112891 VQR 112899
 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +2

Query: 318    RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 131006 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 131185

Query: 378    V 378
              +
Sbjct: 131186 M 131188
 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318    RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 136080 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 136259

Query: 378    V 378
              +
Sbjct: 136260 M 136262
 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 35/72 (48%), Positives = 47/72 (64%)
 Frame = +2

Query: 312    SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
              S A   RRGR+    Y++ Q  ELE+E+  N ++T+ +R  +S T  L+ERQV IWFQNR
Sbjct: 143381 SAAPGRRRGRQT---YSRFQTLELEKEFLFNPYLTRKRRIEVSHTLALTERQVKIWFQNR 143551

Query: 372    RVKEKKVINKLK 383
              R+K KK  NK K
Sbjct: 143552 RMKWKKENNKDK 143587
 Score = 62.4 bits (150), Expect = 7e-08
 Identities = 28/57 (49%), Positives = 42/57 (73%)
 Frame = +1

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              ++ R  YT+ Q+ ELE+E+  N+++T+ +R  I+ T  LSERQ+ IWFQNRR+K KK
Sbjct: 165163 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 165333
 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 26/57 (45%), Positives = 40/57 (69%)
 Frame = +1

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              ++ R  YT  QL ELE+E+  N+++ + +R  ++   NL+ERQ+ IWFQNRR+K KK
Sbjct: 183235 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 183405
 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 25/54 (46%), Positives = 38/54 (70%)
 Frame = +2

Query: 324    RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              R  ++  QL ELE+E+  NK++T+ +R  I+    L++ QV IWFQNRR+K+KK
Sbjct: 200975 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNRRMKQKK 201136
>gb|L35012.1|MUSHOXAE Mus musculus (clone cos2W3H) Hox gene fragment
          Length = 236

 Score =  127 bits (319), Expect = 2e-27
 Identities = 62/69 (89%), Positives = 67/69 (96%)
 Frame = +3

Query: 315 SSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 374
           SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK+KRRRISATTNLSERQVTIWFQNRRVK
Sbjct: 6   SSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVK 185

Query: 375 EKKVINKLK 383
           EKKV++K K
Sbjct: 186 EKKVVSKSK 212
>gb|AF005220.1|HUMTFHOXD2 Homo sapiens transcription factor HOXD13 (Hoxd13) gene, exon 2 and
           complete cds
          Length = 335

 Score =  127 bits (319), Expect = 2e-27
 Identities = 62/80 (77%), Positives = 68/80 (84%)
 Frame = +2

Query: 306 DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
           DV  +  D   YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQVT
Sbjct: 59  DVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVT 238

Query: 366 IWFQNRRVKEKKVINKLKTT 385
           IWFQNRRVK+KK+++KLK T
Sbjct: 239 IWFQNRRVKDKKIVSKLKDT 298
>dbj|AB038155.1|AB038155 Homo sapiens mRNA for NUP98-HOXD13 fusion protein, complete cds
          Length = 1914

 Score =  127 bits (319), Expect = 2e-27
 Identities = 62/80 (77%), Positives = 68/80 (84%)
 Frame = +3

Query: 306  DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
            DV  +  D   YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQVT
Sbjct: 1638 DVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVT 1817

Query: 366  IWFQNRRVKEKKVINKLKTT 385
            IWFQNRRVK+KK+++KLK T
Sbjct: 1818 IWFQNRRVKDKKIVSKLKDT 1877
>gb|AC009336.13|AC009336 Homo sapiens chromosome 2, clone RP11-387A1, complete sequence
          Length = 175667

 Score =  127 bits (319), Expect = 2e-27
 Identities = 62/80 (77%), Positives = 68/80 (84%)
 Frame = +3

Query: 306   DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
             DV  +  D   YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQVT
Sbjct: 78471 DVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVT 78650

Query: 366   IWFQNRRVKEKKVINKLKTT 385
             IWFQNRRVK+KK+++KLK T
Sbjct: 78651 IWFQNRRVKDKKIVSKLKDT 78710
 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 59/145 (40%), Positives = 69/145 (46%), Gaps = 8/145 (5%)
 Frame = +2

Query: 169   LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
             L YGY FG+GYY C     +G   N                              A E  
Sbjct: 77252 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 77431

Query: 221   SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
             +RAKE +FY QGY + PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 77432 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 77584

Query: 281   NGWNGQMYCPKEQTQPPHLWKSTLP 305
             NGWN Q+YC K+Q Q  H WKS+ P
Sbjct: 77585 NGWNSQVYCTKDQPQGSHFWKSSFP 77659
 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 37/61 (60%), Positives = 49/61 (79%)
 Frame = +3

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK
Sbjct: 92904 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 93083

Query: 378   V 378
             +
Sbjct: 93084 L 93086
 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +3

Query: 319   RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
             R RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K+V
Sbjct: 84537 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 84716

Query: 379   I 379
             +
Sbjct: 84717 V 84719
 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +3

Query: 318    RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 102987 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 103166

Query: 378    V 378
              +
Sbjct: 103167 M 103169
 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318    RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 107952 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 108131

Query: 378    V 378
              +
Sbjct: 108132 M 108134
 Score = 62.4 bits (150), Expect = 7e-08
 Identities = 28/57 (49%), Positives = 42/57 (73%)
 Frame = +3

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              ++ R  YT+ Q+ ELE+E+  N+++T+ +R  I+ T  LSERQ+ IWFQNRR+K KK
Sbjct: 136626 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 136796
 Score = 62.0 bits (149), Expect = 9e-08
 Identities = 34/72 (47%), Positives = 46/72 (63%)
 Frame = +3

Query: 312    SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
              S A   RRGR+    Y++ Q  ELE+E+  N ++T+ +R  +S    L+ERQV IWFQNR
Sbjct: 115302 SAAPGRRRGRQT---YSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNR 115472

Query: 372    RVKEKKVINKLK 383
              R+K KK  NK K
Sbjct: 115473 RMKWKKENNKDK 115508
 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
 Frame = +3

Query: 290    PKEQTQPPHLWKSTLPDVVSHPSDASSYRR-----GRKKRVPYTKVQLKELEREYATNKF 344
              P    + PH      P +   P ++   +       ++ R  YT  QL ELE+E+  N++
Sbjct: 155439 PLSSPEGPHPLAQRPPSLPPCPGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRY 155618

Query: 345    ITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              + + +R  ++   NL+ERQ+ IWFQNRR+K KK
Sbjct: 155619 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 155717
 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 30/90 (33%), Positives = 50/90 (55%)
 Frame = +3

Query: 288    YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
              +CP+     P  W +    V    ++  +       R  ++  QL ELE+E+  NK++T+
Sbjct: 173748 FCPR-----PQAWLTPCLYVAGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTR 173912

Query: 348    DKRRRISATTNLSERQVTIWFQNRRVKEKK 377
               +R  I+   +L++ QV IWFQNRR+K+KK
Sbjct: 173913 ARRIEIANCLHLNDTQVKIWFQNRRMKQKK 174002
>dbj|AB032481.1|AB032481 Homo sapiens HOXD13 gene for homeobox transcription factor, complete
             cds
          Length = 10739

 Score =  127 bits (319), Expect = 2e-27
 Identities = 62/80 (77%), Positives = 68/80 (84%)
 Frame = +2

Query: 306   DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
             DV  +  D   YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQVT
Sbjct: 10463 DVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVT 10642

Query: 366   IWFQNRRVKEKKVINKLKTT 385
             IWFQNRRVK+KK+++KLK T
Sbjct: 10643 IWFQNRRVKDKKIVSKLKDT 10702
 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 59/145 (40%), Positives = 69/145 (46%), Gaps = 8/145 (5%)
 Frame = +3

Query: 169  LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
            L YGY FG+GYY C     +G   N                              A E  
Sbjct: 9240 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 9419

Query: 221  SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
            +RAKE +FY QGY + PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 9420 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 9572

Query: 281  NGWNGQMYCPKEQTQPPHLWKSTLP 305
            NGWN Q+YC K+Q Q  H WKS+ P
Sbjct: 9573 NGWNSQVYCTKDQPQGSHFWKSSFP 9647
>gb|AC091179.5| Homo sapiens chromosome 17, clone CTD-2377D24, complete sequence
          Length = 85424

 Score =  125 bits (315), Expect = 5e-27
 Identities = 58/77 (75%), Positives = 70/77 (90%)
 Frame = +1

Query: 310   HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQ 369
             HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITKDKRR+ISA T+LSERQ+TIWFQ
Sbjct: 27676 HPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQ 27855

Query: 370   NRRVKEKKVINKLKTTS 386
             NRRVKEKKV+ K+K ++
Sbjct: 27856 NRRVKEKKVLAKVKNSA 27906
 Score =  101 bits (251), Expect = 1e-19
 Identities = 63/150 (42%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
 Frame = +3

Query: 169   LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
             +PYGYFG GYY C                                 A EE+ SR  EFAF
Sbjct: 26343 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 26498

Query: 229   YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
             Y  GY  G Y   QP+  YLD+ VV  LG PGE RH+ L LP++SYQ WAL  GWN QM 
Sbjct: 26499 Y-PGYP-GTY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 26660

Query: 289   CPKEQTQPPHLWKS-------TLPDVVSHP 311
             C  EQ  P   WK+       TL  +VS P
Sbjct: 26661 CQGEQNPPGPFWKAAFAGTSITLGPLVSEP 26750
>dbj|D10290.1|CHKCHOX4G Gallus gallus Chox-4g gene for homeodomain protein, partial cds
          Length = 581

 Score =  125 bits (314), Expect = 6e-27
 Identities = 61/81 (75%), Positives = 69/81 (84%)
 Frame = +1

Query: 303 TLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER 362
           +L DV  +  +   YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSER
Sbjct: 46  SLGDVALNQPEMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSER 225

Query: 363 QVTIWFQNRRVKEKKVINKLK 383
           QVTIWFQNRRVK+KK+++KLK
Sbjct: 226 QVTIWFQNRRVKDKKIVSKLK 288
>gb|S80553.1|S80553 HOX-4 complex: Hox-4.8=homeobox gene [mice, Genomic, 288 nt]
          Length = 288

 Score =  124 bits (310), Expect = 2e-26
 Identities = 61/82 (74%), Positives = 67/82 (81%)
 Frame = +1

Query: 304 LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
           L DV  +  D   YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRR IS  TNLSERQ
Sbjct: 19  LGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRTISRATNLSERQ 198

Query: 364 VTIWFQNRRVKEKKVINKLKTT 385
           VTIWFQNRRVK+KK+++KLK T
Sbjct: 199 VTIWFQNRRVKDKKIVSKLKDT 264
>emb|AJ335159.1|HSA335159 Homo sapiens genomic sequence surrounding NotI site, clone NL1-GK2C
          Length = 677

 Score =  120 bits (301), Expect = 2e-25
 Identities = 71/217 (32%), Positives = 81/217 (36%), Gaps = 2/217 (0%)
 Frame = +1

Query: 85  NQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 144
           NQCRNLMAH                                                   
Sbjct: 13  NQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGP 192

Query: 145 XXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYPCARMGPHPNXXXXXXXX--XXXXX 202
                                   LPYGYFGSGYYPCARMGPHPN               
Sbjct: 193 AGAEAVKQCIPCSAAAQSSSGPAALPYGYFGSGYYPCARMGPHPNAIKLCAQPD*AAVGA 372

Query: 203 XXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGES 262
                      P  EE SSRAKE AF HQGYA GPYHHH+ +P YL+MP+VPG  GP   
Sbjct: 373 VFWDKYMDTARPTCEELSSRAKESAF*HQGYADGPYHHHKHMPRYLEMPMVPGPRGPR*V 552

Query: 263 RHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHL 299
               LG       P  + +G +G MY  ++    P+L
Sbjct: 553 VPRTLGSYHGKVPPLGVVHGLDGHMYLAQKHA*LPYL 663
>gb|AF071261.1|AF071261 Danio rerio homeobox protein (hoxc13a) gene, partial cds
          Length = 216

 Score =  119 bits (298), Expect = 5e-25
 Identities = 57/67 (85%), Positives = 63/67 (93%)
 Frame = +2

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
           GRKKRVPYTK+QLKELE+EYA +KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK +
Sbjct: 2   GRKKRVPYTKIQLKELEKEYAASKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKFV 181

Query: 380 NKLKTTS 386
           +K KT +
Sbjct: 182 SKSKTNN 202
>emb|Y07699.1|DRHOXA13 D.rerio HOXA-13 gene, partial
          Length = 180

 Score =  117 bits (292), Expect = 2e-24
 Identities = 57/60 (95%), Positives = 59/60 (98%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
           GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNL+ERQVTIWFQNRRVKEKKV+
Sbjct: 1   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAHTNLTERQVTIWFQNRRVKEKKVV 180
>gb|AF071262.1|AF071262 Danio rerio homeobox protein (hoxc13b) gene, partial cds
          Length = 222

 Score =  112 bits (279), Expect = 7e-23
 Identities = 54/67 (80%), Positives = 61/67 (90%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
           GRKKRVPYTK+QLKELE+EYA +KFITKD+RRRISATT+LSERQVTIWFQNRRVKEKK +
Sbjct: 1   GRKKRVPYTKIQLKELEKEYAASKFITKDRRRRISATTSLSERQVTIWFQNRRVKEKKFV 180

Query: 380 NKLKTTS 386
            K   +S
Sbjct: 181 CKSSKSS 201
>emb|AJ335615.1|HSA335615 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-FH20R
          Length = 723

 Score =  106 bits (265), Expect = 3e-21
 Identities = 68/216 (31%), Positives = 71/216 (32%), Gaps = 2/216 (0%)
 Frame = +1

Query: 85  NQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 144
           NQCRNLMAH                                                   
Sbjct: 13  NQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGP 192

Query: 145 XXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYPCARMGPHPNXXXXXXXXX--XXXX 202
                                   LPYGYFGSGYYPCARMGPHPN               
Sbjct: 193 EGAKAAKQ*HPCSPAAHNWSGPAELPYGYFGSGYYPCARMGPHPNAIKWCAQAA*VVDVA 372

Query: 203 XXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGES 262
                     GPAAEE  S   E AF  Q YAAGPY       G       P  G P   
Sbjct: 373 AFEDKYMDTAGPAAEEIISPP*EIAF*QQRYAAGPYTIIIRCLGTRICQWCPAYGAPASH 552

Query: 263 RHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
              P GL +ESYQPW L   WN Q   P+E+   PH
Sbjct: 553 GTNPWGLSIESYQPWVLAKSWNNQNSPPQEEGAAPH 660
>gb|BC016712.1|BC016712 Homo sapiens, clone IMAGE:4108342, mRNA
          Length = 1506

 Score =  103 bits (256), Expect = 3e-20
 Identities = 51/51 (100%), Positives = 51/51 (100%)
 Frame = +3

Query: 336 EREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           EREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 3   EREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 155
>emb|AJ324355.1|HSA324355 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DO2R
          Length = 863

 Score = 95.5 bits (236), Expect = 7e-18
 Identities = 65/164 (39%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
 Frame = +1

Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
           L YGY FG+GYY C     +G   N                              A E  
Sbjct: 34  LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 213

Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
           +RAKE +FY QGY + PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 214 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 366

Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKR 324
           NGWN Q+YC K+Q Q  H WKS+ P         +  RRGR+KR
Sbjct: 367 NGWNSQVYCTKDQPQGSHFWKSSFPG-XGRWRKGTDTRRGREKR 495
>gb|AF005219.1|HUMTFHOXD1 Homo sapiens transcription factor HOXD13 (Hoxd13) gene, exon 1
          Length = 1030

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 59/145 (40%), Positives = 69/145 (46%), Gaps = 8/145 (5%)
 Frame = +1

Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
           L YGY FG+GYY C     +G   N                              A E  
Sbjct: 460 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 639

Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
           +RAKE +FY QGY + PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 640 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 792

Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP 305
           NGWN Q+YC K+Q Q  H WKS+ P
Sbjct: 793 NGWNSQVYCTKDQPQGSHFWKSSFP 867
>emb|AJ335415.1|HSA335415 Homo sapiens genomic sequence surrounding NotI site, clone
           NL3-CI19R
          Length = 746

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 59/145 (40%), Positives = 69/145 (46%), Gaps = 8/145 (5%)
 Frame = +1

Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
           L YGY FG+GYY C     +G   N                              A E  
Sbjct: 34  LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 213

Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
           +RAKE +FY QGY + PY H   VPGY+DM       G GE RHE   + ME YQ W L 
Sbjct: 214 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 366

Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP 305
           NGWN Q+YC K+Q Q  H WKS+ P
Sbjct: 367 NGWNSQVYCTKDQPQGSHFWKSSFP 441
>ref|NM_014212.1| Homo sapiens homeo box C11 (HOXC11), mRNA
          Length = 2018

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
 Frame = +3

Query: 249 DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVV 308
           D P  P   G GE++ EP   P       A       +    +E T P      +   V 
Sbjct: 534 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 698

Query: 309 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
             P+   A +  R RKKR PY+K Q++ELERE+  N +I K+KR ++S   NL++RQV I
Sbjct: 699 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI 878

Query: 367 WFQNRRVKEKKV 378
           WFQNRR+KEKK+
Sbjct: 879 WFQNRRMKEKKL 914
>emb|AJ000041.1|HSHOXC11P Homo sapiens mRNA for HOXC11
          Length = 2018

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
 Frame = +3

Query: 249 DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVV 308
           D P  P   G GE++ EP   P       A       +    +E T P      +   V 
Sbjct: 534 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 698

Query: 309 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
             P+   A +  R RKKR PY+K Q++ELERE+  N +I K+KR ++S   NL++RQV I
Sbjct: 699 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI 878

Query: 367 WFQNRRVKEKKV 378
           WFQNRR+KEKK+
Sbjct: 879 WFQNRRMKEKKL 914
>gb|BC001543.1|BC001543 Homo sapiens, homeo box C11, clone MGC:4906 IMAGE:3462682, mRNA,
           complete cds
          Length = 2082

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
 Frame = +2

Query: 249 DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVV 308
           D P  P   G GE++ EP   P       A       +    +E T P      +   V 
Sbjct: 587 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 751

Query: 309 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
             P+   A +  R RKKR PY+K Q++ELERE+  N +I K+KR ++S   NL++RQV I
Sbjct: 752 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI 931

Query: 367 WFQNRRVKEKKV 378
           WFQNRR+KEKK+
Sbjct: 932 WFQNRRMKEKKL 967
>ref|XM_012215.3| Homo sapiens homeo box C11 (HOXC11), mRNA
          Length = 1963

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
 Frame = +3

Query: 249 DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVV 308
           D P  P   G GE++ EP   P       A       +    +E T P      +   V 
Sbjct: 534 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 698

Query: 309 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
             P+   A +  R RKKR PY+K Q++ELERE+  N +I K+KR ++S   NL++RQV I
Sbjct: 699 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI 878

Query: 367 WFQNRRVKEKKV 378
           WFQNRR+KEKK+
Sbjct: 879 WFQNRRMKEKKL 914
>gb|M81249.1|CHKHOXA Gallus gallus homeodomain-containing protein (GHox4.6) mRNA,
           complete cds
          Length = 1006

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 59/166 (35%), Positives = 83/166 (49%), Gaps = 1/166 (0%)
 Frame = +1

Query: 214 PAAEEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMES 273
           PAA  F           QG+    ++   P P Y       G    GE +      P  S
Sbjct: 427 PAASNFYGSVGRNGILPQGF--DQFYEPAPAPPYQQHSEGEGDADKGELK------PQHS 582

Query: 274 YQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSY-RRGRKKRVPYTKVQL 332
               A P+G   ++        PP        + V+  S++S+  +R RKKR PYTK Q+
Sbjct: 583 ACSKA-PSGQEKKVTTASGAASPPG-------EAVAEKSNSSAVPQRSRKKRCPYTKYQI 738

Query: 333 KELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           +ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 739 RELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 876
>gb|AF151672.1|AF151672 Nereis virens Post1 homeobox protein (Post1) gene, partial cds
          Length = 379

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 40/61 (65%), Positives = 47/61 (76%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
           RKKR PY+K Q+ ELE+EY  N +ITK KR  +S   NLSERQV IWFQNRR+KEKKV +
Sbjct: 184 RKKRKPYSKYQIAELEKEYVNNTYITKPKRWELSQRLNLSERQVKIWFQNRRMKEKKVTD 363

Query: 381 K 381
           K
Sbjct: 364 K 366
>emb|X99679.1|HSHOXC13 H.sapiens mRNA for HOXC13 protein
          Length = 134

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 40/44 (90%), Positives = 43/44 (96%)
 Frame = +1

Query: 332 LKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKE 375
           LKELE+EYA +KFITK+KRRRISATTNLSERQVTIWFQNRRVKE
Sbjct: 1   LKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKE 132
>gb|M81250.1|CHKHOXB Gallus gallus homeodomain-containing protein (GHox1i) mRNA,
           complete cds
          Length = 2212

 Score = 83.2 bits (204), Expect = 4e-14
 Identities = 39/67 (58%), Positives = 53/67 (78%)
 Frame = +1

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           S +SS +R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNR
Sbjct: 682 SGSSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 861

Query: 372 RVKEKKV 378
           R+KEKK+
Sbjct: 862 RMKEKKI 882
>ref|NM_021192.1| Homo sapiens homeo box D11 (HOXD11), mRNA
          Length = 1017

 Score = 83.2 bits (204), Expect = 4e-14
 Identities = 39/67 (58%), Positives = 52/67 (77%)
 Frame = +1

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           S A + +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNR
Sbjct: 772 SSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNR 951

Query: 372 RVKEKKV 378
           R+KEKK+
Sbjct: 952 RMKEKKL 972
>emb|AJ319668.1|XLA319668 Xenopus laevis partial mRNA for homeobox protein Hox A11 (hox A11
           gene)
          Length = 647

 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 38/67 (56%), Positives = 54/67 (79%)
 Frame = +1

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           +++SS +R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNR
Sbjct: 313 ANSSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 492

Query: 372 RVKEKKV 378
           R+KEKK+
Sbjct: 493 RMKEKKI 513
>gb|AF031481.1|AF031481 Ambystoma mexicanum homeobox transcription factor (Hoxd-11) mRNA,
           complete cds
          Length = 2124

 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 41/78 (52%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
 Frame = +1

Query: 302 STLPDVVSHPSDASSY-RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 360
           S+  +V +  S++S+  +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NLS
Sbjct: 610 SSSGEVTADKSNSSATPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLS 789

Query: 361 ERQVTIWFQNRRVKEKKV 378
           +RQV IWFQNRR++EKK+
Sbjct: 790 DRQVKIWFQNRRMREKKL 843
>ref|NM_008273.1| Mus musculus homeo box D11 (Hoxd11), mRNA
          Length = 1011

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 56/149 (37%), Positives = 72/149 (47%), Gaps = 5/149 (3%)
 Frame = +1

Query: 235 AGPYHHHQPVP----GYLDM-PVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYC 289
           AGP     P P    G  D     PG GG G S   P        +P     G  G+   
Sbjct: 565 AGPQPQPAPAPPQPEGAADKGDPKPGAGGGGGS---PCAKATPGPEPKGAAEGGGGEGEG 735

Query: 290 PKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDK 349
           P  +        +  P            +R RKKR PYTK Q++ELERE+  N +I K+K
Sbjct: 736 PPGEAGAEKSGGTVAP------------QRSRKKRCPYTKYQIRELEREFFFNVYINKEK 879

Query: 350 RRRISATTNLSERQVTIWFQNRRVKEKKV 378
           R ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 880 RLQLSRMLNLTDRQVKIWFQNRRMKEKKL 966
>emb|X57674.1|NVNVHBOX2 N.viridescens RNA for homeobox gene NvHbox 2
          Length = 1079

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 40/74 (54%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
 Frame = +1

Query: 306 DVVSHPSDASSY-RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQV 364
           +V +  S++S+  +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV
Sbjct: 583 EVAADKSNSSATPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQV 762

Query: 365 TIWFQNRRVKEKKV 378
            IWFQNRR+KEKK+
Sbjct: 763 KIWFQNRRMKEKKL 804
>ref|NM_005523.3| Homo sapiens homeo box A11 (HOXA11), mRNA
          Length = 942

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 4/92 (4%)
 Frame = +1

Query: 291 KEQTQPPHLWKSTLPDVVS-HPSD---ASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 346
           KE+ + P    S+ P+  S H  D    SS +R RKKR PYTK Q++ELERE+  + +I 
Sbjct: 628 KERRRRPE--SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYIN 801

Query: 347 KDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 802 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 897
>dbj|D10288.1|CHKCHOX4E Gallus gallus Chox-4e gene for homeodomain protein, partial cds
          Length = 511

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 37/61 (60%), Positives = 49/61 (79%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK
Sbjct: 73  QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 252

Query: 378 V 378
           +
Sbjct: 253 L 255
>emb|X60395.1|MMHOX46 M.musculus Hox-4.6 gene
          Length = 2205

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 37/61 (60%), Positives = 49/61 (79%)
 Frame = +2

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK
Sbjct: 1853 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 2032

Query: 378  V 378
            +
Sbjct: 2033 L 2035
>emb|X71422.1|MMHOXD11 M.musculus Hoxd-11 gene
          Length = 5593

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 37/61 (60%), Positives = 49/61 (79%)
 Frame = +2

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK
Sbjct: 3233 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 3412

Query: 378  V 378
            +
Sbjct: 3413 L 3415
>emb|X60762.1|MMHOX46E2 M.musculus Hox-4.6 gene, exon 2
          Length = 284

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 37/61 (60%), Positives = 49/61 (79%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK
Sbjct: 9   QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 188

Query: 378 V 378
           +
Sbjct: 189 L 191
>gb|AF154915.1|AF154915 Homo sapiens transcription factor HOXD12 (HOXD12) and transcription
            factor HOXD11 (HOXD11) genes, complete cds
          Length = 10469

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 37/61 (60%), Positives = 49/61 (79%)
 Frame = +2

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK
Sbjct: 9746 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 9925

Query: 378  V 378
            +
Sbjct: 9926 L 9928
 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 34/59 (57%), Positives = 46/59 (77%)
 Frame = +1

Query: 321  RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
            RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K+V+
Sbjct: 1393 RKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVV 1569
>gb|U20370.1|MMU20370 Mus musculus homeobox protein (Hoxa11) mRNA, complete cds
          Length = 2243

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 45/92 (48%), Positives = 62/92 (66%), Gaps = 4/92 (4%)
 Frame = +3

Query: 291 KEQTQPPHLWKSTLPDVVS-HPSD---ASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 346
           KE+ + P    S+ P+  S H  D    S  +R RKKR PYTK Q++ELERE+  + +I 
Sbjct: 675 KERRRRPE--SSSSPESSSGHTEDKAGGSGGQRTRKKRCPYTKYQIRELEREFFFSVYIN 848

Query: 347 KDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 849 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 944
>ref|NM_010450.1| Mus musculus homeo box A11 (Hoxa11), mRNA
          Length = 2246

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 45/92 (48%), Positives = 62/92 (66%), Gaps = 4/92 (4%)
 Frame = +1

Query: 291 KEQTQPPHLWKSTLPDVVS-HPSD---ASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 346
           KE+ + P    S+ P+  S H  D    S  +R RKKR PYTK Q++ELERE+  + +I 
Sbjct: 676 KERRRRPE--SSSSPESSSGHTEDKAGGSGGQRTRKKRCPYTKYQIRELEREFFFSVYIN 849

Query: 347 KDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 850 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 945
>gb|AF071164.1|AF071164 Homo sapiens homeobox A11 (HOXA11) gene, complete cds
          Length = 8624

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 37/67 (55%), Positives = 52/67 (77%)
 Frame = -3

Query: 312  SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
            S ++  +R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNR
Sbjct: 1269 SPSTGGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 1090

Query: 372  RVKEKKV 378
            R+KEKK+
Sbjct: 1089 RMKEKKI 1069
>gb|AF039307.1|AF039307 Homo sapiens homeobox A11 (HOXA11) gene, complete cds
          Length = 4322

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 37/67 (55%), Positives = 52/67 (77%)
 Frame = +1

Query: 312  SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
            S ++  +R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNR
Sbjct: 3907 SPSTGGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 4086

Query: 372  RVKEKKV 378
            R+KEKK+
Sbjct: 4087 RMKEKKI 4107
>gb|AF287137.1|AF287137 Danio rerio Hoxa-11b gene, complete cds
          Length = 852

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 37/67 (55%), Positives = 53/67 (78%)
 Frame = +1

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           S +S+ ++ RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNR
Sbjct: 607 SGSSNGQKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 786

Query: 372 RVKEKKV 378
           R+KEKK+
Sbjct: 787 RMKEKKL 807
>gb|AF287136.1|AF287136 Danio aequipinnatus Hoxa-11b gene, complete cds
          Length = 852

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 37/67 (55%), Positives = 53/67 (78%)
 Frame = +1

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           S +S+ ++ RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNR
Sbjct: 607 SGSSNGQKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 786

Query: 372 RVKEKKV 378
           R+KEKK+
Sbjct: 787 RMKEKKL 807
>emb|X58849.1|MMHOX47 Murine Hox-4.7 gene
          Length = 1139

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 37/75 (49%), Positives = 52/75 (69%)
 Frame = +3

Query: 307 VVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
           V   P   ++  R RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV I
Sbjct: 789 VAGLPWGGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKI 968

Query: 367 WFQNRRVKEKKVINK 381
           WFQNRR+K+K+V+ +
Sbjct: 969 WFQNRRMKKKRVVQR 1013
>gb|AF144679.1|AF144679 Lingula anatina Post-1 homeodomain protein gene, partial cds
          Length = 346

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 38/58 (65%), Positives = 45/58 (77%)
 Frame = +2

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           RKKR PY+K Q+ ELEREY +N +I+K KR  +S    LSERQV IWFQNRR+KEKKV
Sbjct: 29  RKKRKPYSKYQIAELEREYVSNTYISKPKRWELSQRLQLSERQVKIWFQNRRMKEKKV 202
>gb|AF287138.1|AF287138 Danio rerio Hoxa-11a gene, complete cds
          Length = 855

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 38/67 (56%), Positives = 52/67 (76%)
 Frame = +1

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           S A+S  R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV +WFQNR
Sbjct: 610 SGANSGPRFRKKRCPYTKFQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKMWFQNR 789

Query: 372 RVKEKKV 378
           R+KEKK+
Sbjct: 790 RMKEKKL 810
>gb|AF042652.1|AF042652 Strongylocentrotus purpuratus homeodomain protein SpHbox7 (Hbox7)
            mRNA, complete cds
          Length = 3769

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 36/66 (54%), Positives = 52/66 (78%)
 Frame = +3

Query: 321  RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
            R KR PY+K+Q+ ELE+E+ TN ++T+D+R ++S   +L+ERQV IWFQNRR+K KK+ +
Sbjct: 939  RTKRRPYSKLQIYELEKEFTTNMYLTRDRRSKLSQALDLTERQVKIWFQNRRMKMKKLND 1118

Query: 381  KLKTTS 386
            K KT S
Sbjct: 1119 KEKTQS 1136
>ref|NM_008274.1| Mus musculus homeo box D12 (Hoxd12), mRNA
          Length = 840

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 35/63 (55%), Positives = 48/63 (75%)
 Frame = +1

Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           R RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K+V
Sbjct: 628 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 807

Query: 379 INK 381
           + +
Sbjct: 808 VQR 816
>gb|U20371.1|MMU20371 Mus musculus homeobox protein (Hoxa11) gene, complete cds
          Length = 9038

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 36/61 (59%), Positives = 49/61 (80%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            +R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNRR+KEKK
Sbjct: 6843 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 7022

Query: 378  V 378
            +
Sbjct: 7023 I 7025
>gb|BC015565.1|BC015565 Homo sapiens, homeo box B9, clone MGC:12925 IMAGE:4139164, mRNA,
           complete cds
          Length = 2340

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 53/144 (36%), Positives = 72/144 (49%), Gaps = 8/144 (5%)
 Frame = +3

Query: 243 PVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWA-----LPN---GWNGQMYCPKEQT 294
           P  G   +   P LG PGE   +  G P  S +  A     L N   G+     C   + 
Sbjct: 420 PGQGQAAVKAEPLLGAPGELLKQ--GTPEYSLETSAGREAVLSNQRPGYGDNKICEGSED 593

Query: 295 QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
           +         PD  +  ++    R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++
Sbjct: 594 KER-------PDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 752

Query: 355 ATTNLSERQVTIWFQNRRVKEKKV 378
              NLSERQV IWFQNRR+K KK+
Sbjct: 753 RLLNLSERQVKIWFQNRRMKMKKM 824
>gb|L35011.1|MUSHOXAD Mus musculus (clone cos2W3E) Hox gene fragment
          Length = 231

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 35/63 (55%), Positives = 50/63 (78%)
 Frame = +3

Query: 317 YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 376
           + R RKKR PY+K+QL ELE E+  N+FIT+ +RR +S   NLS++QV IWFQNRR+K+K
Sbjct: 12  HSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKK 191

Query: 377 KVI 379
           +++
Sbjct: 192 RLL 200
>gb|AF328962.1|AF328963S2 Homo sapiens HOXC12 gene, exon 2 and complete cds
          Length = 322

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
 Frame = +1

Query: 296 PPHLWKSTLPDVVSHPSDASSY---RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRR 352
           P  LW +  P +  HP  A  Y    R RKKR PY+K+QL ELE E+  N+FIT+ +RR 
Sbjct: 1   PLILWPT--PAIHLHPG-APWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRE 171

Query: 353 ISATTNLSERQVTIWFQNRRVKEKKVI 379
           +S   NLS++QV IWFQNRR+K+K+++
Sbjct: 172 LSDRLNLSDQQVKIWFQNRRMKKKRLL 252
>ref|NM_024017.1| Homo sapiens homeo box B9 (HOXB9), mRNA
          Length = 753

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 53/144 (36%), Positives = 72/144 (49%), Gaps = 8/144 (5%)
 Frame = +1

Query: 243 PVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWA-----LPN---GWNGQMYCPKEQT 294
           P  G   +   P LG PGE   +  G P  S +  A     L N   G+     C   + 
Sbjct: 325 PGQGQAAVKAEPLLGAPGELLKQ--GTPEYSLETSAGREAVLSNQRPGYGDNKICEGSED 498

Query: 295 QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
           +         PD  +  ++    R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++
Sbjct: 499 KER-------PDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 657

Query: 355 ATTNLSERQVTIWFQNRRVKEKKV 378
              NLSERQV IWFQNRR+K KK+
Sbjct: 658 RLLNLSERQVKIWFQNRRMKMKKM 729
>emb|X83451.1|CIHBOX5 C.intestinalis DNA for homeobox (435 bp)
          Length = 435

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 36/58 (62%), Positives = 43/58 (74%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           RKKR PY+K Q+  LEREY  N FIT+ KR  I+    LS+RQV IWFQNRRVK+KK+
Sbjct: 4   RKKRQPYSKTQISSLEREYKANNFITRQKRENIARDLKLSDRQVKIWFQNRRVKDKKI 177
>emb|X62019.1|GGGHOX G.gallus Ghox 4.7 mRNA
          Length = 1419

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 36/68 (52%), Positives = 50/68 (72%)
 Frame = +1

Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           R RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K+V
Sbjct: 664 RSRKKRKPYTKQQIAELENEFLLNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 843

Query: 379 INKLKTTS 386
           + + +  S
Sbjct: 844 VMREQALS 867
>gb|L35010.1|MUSHOXAC Mus musculus (clone cos2W3A) Hox gene fragment
          Length = 242

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 36/60 (60%), Positives = 48/60 (80%)
 Frame = +3

Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           R RKKR PY+K Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 18  RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 197
>gb|AF276815.1|AF276815 Branchiostoma floridae homeodomain-containing protein Hox13 (Hox13)
           gene, exon 2 and partial cds
          Length = 270

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 36/70 (51%), Positives = 51/70 (72%)
 Frame = +2

Query: 309 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
           S  +D S  R GRKKR PYTK QL  LE+EY  N++++++ R  +S   NL++RQV IWF
Sbjct: 14  SPAADQSVARGGRKKRCPYTKYQLSVLEQEYIQNRYVSRETRLELSQRLNLTDRQVKIWF 193

Query: 369 QNRRVKEKKV 378
           QNRR+K+K++
Sbjct: 194 QNRRMKQKRL 223
>ref|XM_087004.1| Homo sapiens similar to homeo box D12 (LOC150793), mRNA
          Length = 730

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +2

Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           R RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K+V
Sbjct: 89  RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 268

Query: 379 I 379
           +
Sbjct: 269 V 271
>emb|X87751.1|DRHOXD11G D.rerio Hoxd-11 gene
          Length = 792

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 36/67 (53%), Positives = 51/67 (75%)
 Frame = +1

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           +  SS  + RKKR PY+K Q++ELERE+  N +I K+KR ++S   +L++RQV IWFQNR
Sbjct: 547 NSXSSATKSRKKRCPYSKYQIRELEREFFFNVYINKEKRLQLSRMLSLTDRQVKIWFQNR 726

Query: 372 RVKEKKV 378
           R+KEKK+
Sbjct: 727 RMKEKKL 747
>ref|XM_010803.1| Homo sapiens homeo box D12 (HOXD12), mRNA
          Length = 841

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +2

Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           R RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K+V
Sbjct: 629 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 808

Query: 379 I 379
           +
Sbjct: 809 V 811
>dbj|D10289.1|CHKCHOX4F Gallus gallus Chox-4f gene for homeodomain protein, partial cds
          Length = 790

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 36/68 (52%), Positives = 50/68 (72%)
 Frame = +2

Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           R RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K+V
Sbjct: 452 RSRKKRKPYTKQQIAELENEFLLNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 631

Query: 379 INKLKTTS 386
           + + +  S
Sbjct: 632 VMREQALS 655
>gb|AF071260.1|AF071260 Danio rerio homeobox protein (hoxc12b) gene, complete cds
          Length = 1600

 Score = 78.6 bits (192), Expect = 9e-13
 Identities = 35/70 (50%), Positives = 54/70 (77%)
 Frame = +1

Query: 317  YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 376
            +R+ RKKR PY+K+QL ELE E+  N+FIT+ +RR +S   NL+++QV IWFQNRR+K+K
Sbjct: 1369 HRQTRKKRKPYSKLQLNELEGEFILNEFITRQRRRELSDRLNLTDQQVKIWFQNRRMKKK 1548

Query: 377  KVINKLKTTS 386
            +++ + +  S
Sbjct: 1549 RLLMREQALS 1578
>gb|M34857.1|MUSHOX25A Mouse Hox-2.5 mRNA
          Length = 1413

 Score = 78.6 bits (192), Expect = 9e-13
 Identities = 36/63 (57%), Positives = 46/63 (72%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NLSERQV IWFQNRR+K KK
Sbjct: 178 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 357

Query: 378 VIN 380
           + N
Sbjct: 358 MNN 366
>ref|XM_028620.2| Homo sapiens homeo box C9 (HOXC9), mRNA
          Length = 1535

 Score = 78.6 bits (192), Expect = 9e-13
 Identities = 53/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
 Frame = +3

Query: 258 GPGESRHEP---LGLPME--SYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPS 312
           GPGE R  P    G P E     P  LP+     +   K + +   L      D  +  +
Sbjct: 480 GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADL------DPSNPVA 641

Query: 313 DASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRR 372
           +    R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR
Sbjct: 642 NWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRR 821

Query: 373 VKEKKVINKLKT 384
           +K KK +NK KT
Sbjct: 822 MKMKK-MNKEKT 854
>dbj|AK056414.1|AK056414 Homo sapiens cDNA FLJ31852 fis, clone NT2RP7000812, highly similar
           to HOMEOBOX PROTEIN HOX-B9
          Length = 2516

 Score = 78.6 bits (192), Expect = 9e-13
 Identities = 37/74 (50%), Positives = 50/74 (67%)
 Frame = +1

Query: 305 PDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQV 364
           PD  +  ++    R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NLSERQV
Sbjct: 535 PDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQV 714

Query: 365 TIWFQNRRVKEKKV 378
            IWFQNRR+K KK+
Sbjct: 715 KIWFQNRRMKMKKM 756
>dbj|AK000445.1|AK000445 Homo sapiens cDNA FLJ20438 fis, clone KAT04696, highly similar to
           HXC9_MOUSE HOMEOBOX PROTEIN HOX-C9
          Length = 1561

 Score = 78.6 bits (192), Expect = 9e-13
 Identities = 53/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
 Frame = +1

Query: 258 GPGESRHEP---LGLPME--SYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPS 312
           GPGE R  P    G P E     P  LP+     +   K + +   L      D  +  +
Sbjct: 409 GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADL------DPSNPVA 570

Query: 313 DASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRR 372
           +    R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR
Sbjct: 571 NWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRR 750

Query: 373 VKEKKVINKLKT 384
           +K KK +NK KT
Sbjct: 751 MKMKK-MNKEKT 783
>dbj|AB026968.1|AB026968 Oryzias latipes gene for HOXD9B, partial cds
          Length = 675

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 42/111 (37%), Positives = 64/111 (56%), Gaps = 2/111 (1%)
 Frame = +1

Query: 271 MESYQPW-ALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRG-RKKRVPYT 328
           +  + PW A P   +      ++Q Q     +   P    +PS +  + +  RKKR PYT
Sbjct: 169 LNGFSPWTAEPKKEDEDRESQQQQQQQQQRQRQAPPPDPENPSASWIHAKSTRKKRCPYT 348

Query: 329 KVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
           K Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK++
Sbjct: 349 KRQTLELEKEFLYNMYLTRDRRLEVAGLLNLTERQVKIWFQNRRMKMKKLM 501
>dbj|AK056123.1|AK056123 Homo sapiens cDNA FLJ31561 fis, clone NT2RI2001410
          Length = 2477

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 52/144 (36%), Positives = 72/144 (49%), Gaps = 8/144 (5%)
 Frame = +2

Query: 243 PVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWA-----LPN---GWNGQMYCPKEQT 294
           P  G   +   P LG PGE   +  G P  S +  A     L N   G+     C   + 
Sbjct: 308 PGQGQAAVKAEPLLGAPGELLKQ--GTPEYSLETSAGREAVLSNQRPGYGDNKICEGSED 481

Query: 295 QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
           +         PD  +  ++    R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++
Sbjct: 482 KER-------PDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 640

Query: 355 ATTNLSERQVTIWFQNRRVKEKKV 378
              NLSERQV IWFQNRR+K +K+
Sbjct: 641 RLLNLSERQVKIWFQNRRMKMRKM 712
>gb|AF071258.1|AF071258 Danio rerio homeobox protein (hoxc11a) gene, partial cds
          Length = 216

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 35/58 (60%), Positives = 47/58 (80%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           RKKR PY+K Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 4   RKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 177
>gb|AY014296.1|AY014295S2 Homo sapiens HOXB9 gene, exon 2 and complete cds
          Length = 392

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 35/61 (57%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NLSERQV IWFQNRR+K KK
Sbjct: 145 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 324

Query: 378 V 378
           +
Sbjct: 325 M 327
>gb|S66855.1|S66855 HoxB9=Hox-2.5 [mice, embryos, mRNA Partial, 786 nt]
          Length = 786

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 35/61 (57%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NLSERQV IWFQNRR+K KK
Sbjct: 580 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 759

Query: 378 V 378
           +
Sbjct: 760 M 762
>emb|X16172.1|HSHOX25 Human HOX-2.5 gene for homeodomain protein, partial
          Length = 238

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 35/61 (57%), Positives = 45/61 (73%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NLSERQV IWFQNRR+K KK
Sbjct: 32  RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 211

Query: 378 V 378
           +
Sbjct: 212 M 214
>dbj|AK012173.1|AK012173 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2610528H19:homeo box C9, full
           insert sequence
          Length = 1097

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 587 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 766

Query: 378 VINKLKT 384
            +NK KT
Sbjct: 767 -MNKEKT 784
>gb|AF071259.1|AF071259 Danio rerio homeobox protein (hoxc11b) gene, partial cds
          Length = 219

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 35/57 (61%), Positives = 46/57 (80%)
 Frame = +1

Query: 322 KKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           KKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 1   KKRCPYTKFQIRELEREFFFNVYINKEKRLQLSRILNLTDRQVKIWFQNRRMKEKKL 171
>ref|NM_008272.1| Mus musculus homeo box C9 (Hoxc9), mRNA
          Length = 1434

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 916 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 1095

Query: 378 VINKLKT 384
            +NK KT
Sbjct: 1096-MNKEKT 1113
>emb|X55318.1|MMHOX32A Mus musculus Hox-3.2 gene
          Length = 1434

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 916 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 1095

Query: 378 VINKLKT 384
            +NK KT
Sbjct: 1096-MNKEKT 1113
>emb|X07647.1|MMHOX32 Mouse mRNA for Hox 3.2 protein
          Length = 225

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 10  RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 189

Query: 378 VINKLKT 384
            +NK KT
Sbjct: 190 -MNKEKT 207
>gb|AC011194.15|AC011194 Mus musculus chromosome 11, clone RP23-196F5, complete sequence
          Length = 181320

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 35/61 (57%), Positives = 45/61 (73%)
 Frame = +3

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NLSERQV IWFQNRR+K KK
Sbjct: 70431 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 70610

Query: 378   V 378
             +
Sbjct: 70611 M 70613
 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 39/91 (42%), Positives = 55/91 (59%)
 Frame = +3

Query: 296    PPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA 355
              PP L   TLP      +   +   G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+ 
Sbjct: 100617 PPPLTGITLPRGSPLTALDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAH 100796

Query: 356    TTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
                 LSERQ+ IWFQNRR+K KK  NKLK+ S
Sbjct: 100797 ALCLSERQIKIWFQNRRMKWKK-DNKLKSMS 100886
 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 35/83 (42%), Positives = 49/83 (58%), Gaps = 1/83 (1%)
 Frame = +2

Query: 305   PDVVSHPSDASSYRRGRKK-RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
             P  +S P        GR++ R  Y++ Q  ELE+E+  N ++T+ +R  +S    L+ERQ
Sbjct: 79904 PSPLSRPFPPFPAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQ 80083

Query: 364   VTIWFQNRRVKEKKVINKLKTTS 386
             V IWFQNRR+K KK  NK K  S
Sbjct: 80084 VKIWFQNRRMKWKKENNKDKFPS 80152
 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +1

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              R+ R  YT  QL ELE+E+  NK++ + +R  I+A  +L+ERQV +WFQNRR+K K+
Sbjct: 148771 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 148941
 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 31/69 (44%), Positives = 45/69 (64%)
 Frame = +1

Query: 309    SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
              S P  A+S    ++ R  YT  QL ELE+E+  N+++ + +R  ++   NLSERQ+ IWF
Sbjct: 141430 SPPGSAAS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWF 141597

Query: 369    QNRRVKEKK 377
              QNRR+K KK
Sbjct: 141598 QNRRMKYKK 141624
 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 34/76 (44%), Positives = 48/76 (62%)
 Frame = +3

Query: 302   STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
             S  P  V+  S   S RRGR+    YT+ Q  ELE+E+  N+++T+ +R  I+    L+E
Sbjct: 96426 SVSPLCVTGSSFGPSGRRGRQT---YTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTE 96596

Query: 362   RQVTIWFQNRRVKEKK 377
             RQ+ IWFQNRR+K KK
Sbjct: 96597 RQIKIWFQNRRMKWKK 96644
 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 28/54 (51%), Positives = 40/54 (73%)
 Frame = +2

Query: 324    RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              R  +T  QL ELE+E+  NK++++ +R  I+AT  L+E QV IWFQNRR+K+KK
Sbjct: 162635 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 162796
 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +1

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              ++ R  YT+ Q+ ELE+E+  N+++T+ +R  I+    LSERQ+ IWFQNRR+K KK
Sbjct: 115840 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 116010
 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +3

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             ++ R  YT+ Q  ELE+E+  N+++T+ +R  I+ T  L+ERQ+ IWFQNRR+K KK
Sbjct: 85170 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKK 85340
>gb|M35603.1|MUSHOXMAA Mouse Hox-3.1 gene and Hox-3.2-Hox-3.1 intergenic region
          Length = 10272

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 10  RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 189

Query: 378 VINKLKT 384
            +NK KT
Sbjct: 190 -MNKEKT 207
 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 30/63 (47%), Positives = 41/63 (64%)
 Frame = +3

Query: 321  RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
            R  R  Y++ Q  ELE+E+  N ++T+ +R  +S    L+ERQV IWFQNRR+K KK  N
Sbjct: 8652 RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN 8831

Query: 381  KLK 383
            K K
Sbjct: 8832 KDK 8840
>gb|U61980.1|OAU61980 Ovis aries Hoxc-9 mRNA, partial cds
          Length = 444

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 76  RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 255

Query: 378 VINKLKT 384
            +NK KT
Sbjct: 256 -MNKEKT 273
>gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone RP11-361K8, complete sequence
          Length = 168215

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 35/61 (57%), Positives = 45/61 (73%)
 Frame = +2

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NLSERQV IWFQNRR+K KK
Sbjct: 70256 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 70435

Query: 378   V 378
             +
Sbjct: 70436 M 70438
 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 33/67 (49%), Positives = 47/67 (69%)
 Frame = +3

Query: 320    GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
              G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    LSERQ+ IWFQNRR+K KK  
Sbjct: 100929 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK-D 101105

Query: 380    NKLKTTS 386
              NKLK+ S
Sbjct: 101106 NKLKSMS 101126
 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 51/135 (37%), Positives = 67/135 (48%), Gaps = 3/135 (2%)
 Frame = +2

Query: 255   GLGGPGESRHEPLG-LPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPS- 312
             GL  P    H   G LP+  + P  +    N    CP     PP      LP V   P  
Sbjct: 79694 GLLAPPPPPHGVEGPLPLL*WSPRLVHESSNLLRPCPLPH--PP------LPSVSPFPPF 79849

Query: 313   -DASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
               A+  RRGR+    Y++ Q  ELE+E+  N ++T+ +R  +S    L+ERQV IWFQNR
Sbjct: 79850 PAAAGRRRGRQT---YSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNR 80020

Query: 372   RVKEKKVINKLKTTS 386
             R+K KK  NK K  S
Sbjct: 80021 RMKWKKENNKDKFPS 80065
 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +3

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              R+ R  YT  QL ELE+E+  NK++ + +R  I+A  +L+ERQV +WFQNRR+K K+
Sbjct: 149670 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 149840
 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 31/69 (44%), Positives = 45/69 (64%)
 Frame = +2

Query: 309    SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
              S P  A+S    ++ R  YT  QL ELE+E+  N+++ + +R  ++   NLSERQ+ IWF
Sbjct: 142289 SPPGSAAS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWF 142456

Query: 369    QNRRVKEKK 377
              QNRR+K KK
Sbjct: 142457 QNRRMKYKK 142483
 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 34/76 (44%), Positives = 48/76 (62%)
 Frame = +3

Query: 302   STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
             S  P  V+  S   S RRGR+    YT+ Q  ELE+E+  N+++T+ +R  I+    L+E
Sbjct: 96669 SASPLCVTGSSFGPSGRRGRQT---YTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTE 96839

Query: 362   RQVTIWFQNRRVKEKK 377
             RQ+ IWFQNRR+K KK
Sbjct: 96840 RQIKIWFQNRRMKWKK 96887
 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 28/54 (51%), Positives = 40/54 (73%)
 Frame = +1

Query: 324    RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              R  +T  QL ELE+E+  NK++++ +R  I+AT  L+E QV IWFQNRR+K+KK
Sbjct: 163696 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 163857
 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +1

Query: 321    RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
              ++ R  YT+ Q+ ELE+E+  N+++T+ +R  I+    LSERQ+ IWFQNRR+K KK
Sbjct: 116377 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 116547
 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +3

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             ++ R  YT+ Q  ELE+E+  N+++T+ +R  I+ T  L+ERQ+ IWFQNRR+K KK
Sbjct: 85281 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKK 85451
>gb|AY014302.1|AY014301S2 Homo sapiens HOXC9 gene, exon 2 and complete cds
          Length = 390

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 74  RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 253

Query: 378 VINKLKT 384
            +NK KT
Sbjct: 254 -MNKEKT 271
>emb|Y07698.1|DRHOXA11 D.rerio HOXA-11 gene, partial
          Length = 180

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 35/58 (60%), Positives = 47/58 (80%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 4   RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKM 177
>gb|S76303.1|S76303 Hox-C|Hox-3 {clone 27b} [rats, Sprague-Dawley, liver, Genomic, 240
           nt]
          Length = 240

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 49/67 (72%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 11  RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 190

Query: 378 VINKLKT 384
            +NK KT
Sbjct: 191 -MNKEKT 208
>gb|U31564.1|HEU31564 Heliocidaris erythrogramma HEHBOX7 (HeHbox7) gene, partial cds
          Length = 680

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 35/66 (53%), Positives = 50/66 (75%)
 Frame = +2

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
           R KR PY+K+Q+ ELE+E+  N ++T+D+R ++S   +L+ERQV IWFQNRR+K KK+  
Sbjct: 161 RTKRRPYSKLQIYELEKEFQANMYLTRDRRSKLSQALDLTERQVKIWFQNRRMKMKKLNE 340

Query: 381 KLKTTS 386
           K KT S
Sbjct: 341 KEKTQS 358
>gb|AF071240.1|AF071240 Danio rerio homeobox protein (hoxa11a) gene, complete cds
          Length = 1799

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 35/60 (58%), Positives = 48/60 (79%)
 Frame = +1

Query: 319  RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
            R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV +WFQNRR+KEKK+
Sbjct: 1555 RFRKKRCPYTKFQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKMWFQNRRMKEKKL 1734
>emb|Z35150.1|BFHOX10G B.floridae Hox-10 gene for homeobox protein (partial)
          Length = 287

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 34/61 (55%), Positives = 48/61 (77%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R GRKKR PYTK Q+ ELE+E+  N ++++++R+ IS   NLS+RQV IWFQNRR+K K+
Sbjct: 33  RVGRKKRCPYTKYQILELEKEFLFNMYVSRERRQEISRHVNLSDRQVKIWFQNRRMKMKR 212

Query: 378 V 378
           +
Sbjct: 213 M 215
>ref|NM_021193.1| Homo sapiens homeo box D12 (HOXD12), mRNA
          Length = 828

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 34/59 (57%), Positives = 46/59 (77%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
           RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++QV IWFQNRR+K+K+V+
Sbjct: 622 RKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVV 798
>gb|AF071250.1|AF071250 Danio rerio homeobox protein (hoxb10a) gene, partial cds
          Length = 700

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 35/69 (50%), Positives = 52/69 (74%)
 Frame = +2

Query: 316 SYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKE 375
           S + GRKKR PY+K Q+ ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K 
Sbjct: 281 SAKAGRKKRCPYSKHQILELEKEFLFNMYLTRERRLEISRSINLTDRQVKIWFQNRRMKL 460

Query: 376 KKVINKLKT 384
           KK+  + +T
Sbjct: 461 KKMTREHRT 487
>ref|XM_028621.1| Homo sapiens homeo box C10 (HOXC10), mRNA
          Length = 1852

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS T NL++RQV IWFQNRR+K KK
Sbjct: 796 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 975

Query: 378 V 378
           +
Sbjct: 976 M 978
>gb|U05571.1|SCU05571 Styela clava Ascidian homeobox protein mRNA, partial cds
          Length = 1205

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 33/58 (56%), Positives = 48/58 (81%)
 Frame = +2

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           GRKKRVPYTK QL ELE+E+  N+++++++R+ ++   +LS+RQV IWFQNRR+K KK
Sbjct: 32  GRKKRVPYTKYQLLELEKEFHYNQYLSRERRQEVAKAVSLSDRQVKIWFQNRRMKWKK 205
>gb|BC001293.1|BC001293 Homo sapiens, homeo box C10, clone MGC:5259 IMAGE:3458115, mRNA,
           complete cds
          Length = 1989

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS T NL++RQV IWFQNRR+K KK
Sbjct: 867 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 1046

Query: 378 V 378
           +
Sbjct: 1047M 1049
>gb|AF071267.1|AF071267 Danio rerio homeobox protein (hoxc9a) gene, complete cds
          Length = 1990

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 38/69 (55%), Positives = 49/69 (70%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 1740 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 1919

Query: 378  VINKLKTTS 386
             +NK K  S
Sbjct: 1920 -MNKEKNDS 1943
>gb|AF255675.1|AF255675 Homo sapiens homeoprotein C10 (HOXC10) mRNA, complete cds
          Length = 1870

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS T NL++RQV IWFQNRR+K KK
Sbjct: 796 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 975

Query: 378 V 378
           +
Sbjct: 976 M 978
>ref|NM_017409.1| Homo sapiens homeo box C10 (HOXC10), mRNA
          Length = 1870

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS T NL++RQV IWFQNRR+K KK
Sbjct: 796 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 975

Query: 378 V 378
           +
Sbjct: 976 M 978
>gb|AF075754.2|AF075754 Holothuria glaberrima homeodomain-containing DNA binding protein 12
           (Hbox12) mRNA, partial cds
          Length = 720

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 34/63 (53%), Positives = 49/63 (76%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
           R KR PY+K+Q+ ELE+E+  N ++T+D+R ++S T +L+ERQV IWFQNRR+K KK+  
Sbjct: 526 RTKRRPYSKLQIYELEKEFQHNMYLTRDRRAKLSQTLSLTERQVKIWFQNRRMKLKKITR 705

Query: 381 KLK 383
           K K
Sbjct: 706 KRK 714
>emb|X63507.1|MMHOX35 M.musculus HOX-3.5 gene
          Length = 6343

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 35/61 (57%), Positives = 47/61 (76%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS T NL++RQV IWFQNRR+K KK
Sbjct: 4863 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 5042

Query: 378  V 378
            +
Sbjct: 5043 M 5045
>gb|U05600.1|SPU05600 Styela plicata Ascidian homeobox protein gene, partial cds
          Length = 543

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 33/58 (56%), Positives = 48/58 (81%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           GRKKRVPYTK QL ELE+E+  N+++++++R+ ++   +LS+RQV IWFQNRR+K KK
Sbjct: 115 GRKKRVPYTKYQLLELEKEFHYNQYLSRERRQEVAKAVSLSDRQVKIWFQNRRMKWKK 288
>gb|S73920.1|S73920 Styela clava DNA binding protein AHox2 (AHox2) mRNA, partial cds
          Length = 180

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 33/58 (56%), Positives = 48/58 (81%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           GRKKRVPYTK QL ELE+E+  N+++++++R+ ++   +LS+RQV IWFQNRR+K KK
Sbjct: 1   GRKKRVPYTKYQLLELEKEFHYNQYLSRERRQEVAKAVSLSDRQVKIWFQNRRMKWKK 174
>gb|S73921.1|S73921 AHox3 [Styela plicata, Genomic, 180 nt]
          Length = 180

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 33/58 (56%), Positives = 48/58 (81%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           GRKKRVPYTK QL ELE+E+  N+++++++R+ ++   +LS+RQV IWFQNRR+K KK
Sbjct: 1   GRKKRVPYTKYQLLELEKEFHYNQYLSRERRQEVAKAVSLSDRQVKIWFQNRRMKWKK 174
>gb|BC019150.1|BC019150 Mus musculus, homeo box D9, clone MGC:29423 IMAGE:5064578, mRNA,
            complete cds
          Length = 2188

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 40/88 (45%), Positives = 57/88 (64%)
 Frame = +2

Query: 291  KEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKR 350
            +E+ QPP   +  L D  +  ++    R  RKKR PYTK Q  ELE+E+  N ++T+D+R
Sbjct: 1058 EEEKQPPQPPQQQL-DPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRR 1234

Query: 351  RRISATTNLSERQVTIWFQNRRVKEKKV 378
              ++   NL+ERQV IWFQNRR+K KK+
Sbjct: 1235 YEVARILNLTERQVKIWFQNRRMKMKKM 1318
>ref|XM_011611.3| Homo sapiens homeo box A10 (HOXA10), mRNA
          Length = 1499

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
 Frame = +3

Query: 231  QGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCP 290
            Q   AGP+    P  G+ D+P     G    +R E     ++S  P  L  G  G     
Sbjct: 966  QQLGAGPFPAQPPGRGF-DLPPALASGSADAARKERA---LDSPPPPTLACGSGGGSQGD 1133

Query: 291  KEQTQPPHLWKSTLPDVVSHPSDAS---------------------SYRRGRKKRVPYTK 329
            +E     H   S   ++   PS++S                     + + GRKKR PYTK
Sbjct: 1134 EEA----HASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTK 1301

Query: 330  VQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
             Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1302 HQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 1448
>gb|BC007600.1|BC007600 Homo sapiens, clone IMAGE:3347294, mRNA
          Length = 1586

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
 Frame = +3

Query: 231 QGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCP 290
           Q   AGP+    P  G+ D+P     G    +R E     ++S  P  L  G  G     
Sbjct: 375 QQLGAGPFPAQPPGRGF-DLPPALASGSADAARKERA---LDSPPPPTLACGSGGGSQGD 542

Query: 291 KEQTQPPHLWKSTLPDVVSHPSDAS---------------------SYRRGRKKRVPYTK 329
           +E     H   S   ++   PS++S                     + + GRKKR PYTK
Sbjct: 543 EEA----HASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTK 710

Query: 330 VQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
            Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK+
Sbjct: 711 HQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 857
>gb|AF453292.1|AF453292 Sus scrofa homeobox A11 mRNA, partial cds
          Length = 215

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 34/57 (59%), Positives = 46/57 (80%)
 Frame = +2

Query: 322 KKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           KKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 2   KKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 172
>gb|AF071256.1|AF071256 Danio rerio homeobox protein (hoxb9a) gene, complete cds
          Length = 2398

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 2088 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLTERQVKIWFQNRRMKMKK 2267

Query: 378  V 378
            +
Sbjct: 2268 M 2270
>gb|BC013971.1|BC013971 Homo sapiens, clone MGC:12859 IMAGE:4107013, mRNA, complete cds
          Length = 2627

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
 Frame = +2

Query: 231 QGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCP 290
           Q   AGP+    P  G+ D+P     G    +R E     ++S  P  L  G  G     
Sbjct: 707 QQLGAGPFPAQPPGRGF-DLPPALASGSADAARKERA---LDSPPPPTLACGSGGGSQGD 874

Query: 291 KEQTQPPHLWKSTLPDVVSHPSDAS---------------------SYRRGRKKRVPYTK 329
           +E     H   S   ++   PS++S                     + + GRKKR PYTK
Sbjct: 875 EEA----HASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTK 1042

Query: 330 VQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
            Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1043HQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 1189
>ref|NM_013555.1| Mus musculus homeo box D9 (Hoxd9), mRNA
          Length = 1020

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 40/88 (45%), Positives = 57/88 (64%)
 Frame = +1

Query: 291 KEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKR 350
           +E+ QPP   +  L D  +  ++    R  RKKR PYTK Q  ELE+E+  N ++T+D+R
Sbjct: 730 EEEKQPPQPPQQQL-DPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRR 906

Query: 351 RRISATTNLSERQVTIWFQNRRVKEKKV 378
             ++   NL+ERQV IWFQNRR+K KK+
Sbjct: 907 YEVARILNLTERQVKIWFQNRRMKMKKM 990
>dbj|D11330.1|MUSHOX36C Mouse Hox 3.6 gene
          Length = 180

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           GRKKR PYTK Q  ELE+E+  N ++T+++R  IS T NL++RQV IWFQNRR+K KK+
Sbjct: 1   GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKM 177
>gb|U92572.1|FRU92572 Fugu rubripes homeobox protein HOXC-9 (FrHOXC-9) gene, complete cds;
            homeobox protein HOXC-8 (FrHOXC-8) gene, complete cds;
            and homeobox protein HOXC-6 (FrHOXC-6) gene, complete cds
          Length = 20919

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 38/69 (55%), Positives = 49/69 (70%)
 Frame = +1

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 3979 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRFEVARVLNLTERQVKIWFQNRRMKMKK 4158

Query: 378  VINKLKTTS 386
             +NK K  S
Sbjct: 4159 -MNKEKNDS 4182
 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 29/61 (47%), Positives = 41/61 (66%)
 Frame = +3

Query: 321  RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
            R  R  Y++ Q  ELE+E+  N ++T+ +R  +S   +L+ERQV IWFQNRR+K KK  N
Sbjct: 9729 RNGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALSLTERQVKIWFQNRRMKWKKENN 9908

Query: 381  K 381
            K
Sbjct: 9909 K 9911
 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 28/66 (42%), Positives = 43/66 (64%)
 Frame = +2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
             R+ R  Y++ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK  N
Sbjct: 19772 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN 19951

Query: 381   KLKTTS 386
                T +
Sbjct: 19952 LTSTVT 19969
>dbj|AB026969.1|AB026969 Oryzias latipes mRNA for HOXB9A, partial cds
          Length = 456

 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 34/60 (56%), Positives = 44/60 (72%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 137 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARALNLTERQVKIWFQNRRMKMKK 316
>gb|AY052760.1| Euprymna scolopes posterior-1 homeodomain protein (Post1) mRNA,
           partial cds
          Length = 255

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 35/64 (54%), Positives = 48/64 (74%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
           RK+R PY+K Q+ ELEREYA + +I+K +R  +S   NLSERQ+ IWFQNRR+K KK+  
Sbjct: 43  RKRRRPYSKYQIAELEREYALSTYISKSRRWELSQLLNLSERQIKIWFQNRRIKAKKLQK 222

Query: 381 KLKT 384
           + +T
Sbjct: 223 RDET 234
>dbj|AB026970.1|AB026970 Oryzias latipes mRNA for HOXC9A, complete cds
          Length = 1106

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 38/69 (55%), Positives = 49/69 (70%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 631 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 810

Query: 378 VINKLKTTS 386
            +NK K  S
Sbjct: 811 -MNKEKGDS 834
>dbj|AB049973.1|AB049973 Dugesia japonica mRNA for Hox class homeodomain protein DjAbd-Bb,
            complete cds
          Length = 1641

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 47/140 (33%), Positives = 69/140 (48%)
 Frame = +2

Query: 239  HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
            +++Q  P     P +P + G       P   PM +   +A  N      +  +  T+   
Sbjct: 953  NYYQSTPNNASYPTIPYMSGT------PAYNPMYAAASFAASNSLFSSDFFSRFHTEDML 1114

Query: 299  LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 358
            L   +L +         +  R RKKR PYT+ Q   LE E+  N +IT+ KR  IS   +
Sbjct: 1115 LDSGSLTE---------AEMRSRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLH 1267

Query: 359  LSERQVTIWFQNRRVKEKKV 378
            LSERQV +WFQNRR+K+KK+
Sbjct: 1268 LSERQVKVWFQNRRMKKKKL 1327
>ref|NM_002148.1| Homo sapiens homeo box D10 (HOXD10), mRNA
          Length = 1126

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 823 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 1002

Query: 378 V 378
           +
Sbjct: 1003M 1005
>emb|X59373.1|HSHOX4D Human HOX4D mRNA for a homeobox protein
          Length = 1126

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 823 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 1002

Query: 378 V 378
           +
Sbjct: 1003M 1005
>gb|BC013463.1|BC013463 Mus musculus, clone MGC:18685 IMAGE:4240579, mRNA, complete cds
          Length = 1865

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 840 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 1019

Query: 378 V 378
           +
Sbjct: 1020M 1022
>gb|U51413.1|RPU51413 Rasbora paviei Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U51422.1|RHU51422 Rasbora heteromorpha Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U51412.1|DPU51412 Danio pulcher Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U51411.1|DKU51411 Danio kerri Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>emb|X87753.1|DRHOXD12G D.rerio Hoxd-12 gene
          Length = 831

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 35/66 (53%), Positives = 48/66 (72%)
 Frame = +1

Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           R RKKR PYTK QL ELE E+  N+FI + KR+ +S    LS++QV IWFQNRR+K+K++
Sbjct: 619 RSRKKRKPYTKPQLTELENEFMMNEFINRQKRKELSDRLELSDQQVKIWFQNRRMKKKRL 798

Query: 379 INKLKT 384
           + +  T
Sbjct: 799 MMREHT 816
>emb|X68976.1|NVHOXD N.viridescens mRNA for Hoxd-10
          Length = 1661

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 840 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 1019

Query: 378 V 378
           +
Sbjct: 1020M 1022
>gb|U31600.1|HEU31600 Heliocidaris erythrogramma HEHBOX10 (HeHbox10) gene, partial cds
          Length = 1318

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 39/79 (49%), Positives = 53/79 (66%), Gaps = 8/79 (10%)
 Frame = +1

Query: 308 VSHPSDASSYR--------RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNL 359
           V+H + ++SY         R RKKR PYTK Q  ELE+E+  N ++T+D+R  IS   +L
Sbjct: 64  VNHQTVSASYTWMAPPPNVRTRKKRKPYTKFQTFELEKEFLYNMYLTRDRRSHISRALSL 243

Query: 360 SERQVTIWFQNRRVKEKKV 378
           +ERQV IWFQNRR+K KK+
Sbjct: 244 TERQVKIWFQNRRMKLKKM 300
>dbj|D10287.1|CHKCHOX4D Gallus gallus Chox-4d gene for homeodomain protein, partial cds
          Length = 494

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 249 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 428

Query: 378 V 378
           +
Sbjct: 429 M 431
>gb|AF298186.1|AF298186 Ambystoma mexicanum homeodomain protein Hoxc10 short form (Hoxc10)
           mRNA, complete cds, alternatively spliced
          Length = 1598

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 562 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKK 741

Query: 378 V 378
           +
Sbjct: 742 M 744
>gb|AF151673.1|AF151673 Nereis virens Post2 homeobox protein (Post2) gene, partial cds
          Length = 838

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 37/85 (43%), Positives = 51/85 (59%)
 Frame = +1

Query: 300 WKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNL 359
           W  ++   ++     +   R RKKR PYT+ Q   LE E+  N +IT+ KR  IS   +L
Sbjct: 169 WHQSINQSINQCFLITDQPRQRKKRKPYTRYQTMVLENEFMGNSYITRQKRWEISCKLHL 348

Query: 360 SERQVTIWFQNRRVKEKKVINKLKT 384
           SERQV +WFQNRR+K KK+  + KT
Sbjct: 349 SERQVKVWFQNRRMKRKKLNERAKT 423
>gb|AF224262.1|AF224262 Heterodontus francisci HoxA10 (HoxA10), HoxA9 (HoxA9), HoxA7 (HoxA7),
             HoxA6 (HoxA6), HoxA5 (HoxA5), HoxA4 (HoxA4), HoxA3
             (HoxA3), HoxA2 (HoxA2), and HoxA1 (HoxA1) genes, complete
             cds
          Length = 81196

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 11281 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 11460

Query: 378   V 378
             +
Sbjct: 11461 I 11463
 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +1

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 2257 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 2436

Query: 378  V 378
            +
Sbjct: 2437 M 2439
 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 33/75 (44%), Positives = 50/75 (66%)
 Frame = +3

Query: 312   SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
             +D+     G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNR
Sbjct: 32562 TDSMGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 32741

Query: 372   RVKEKKVINKLKTTS 386
             R+K KK  NKLK+ S
Sbjct: 32742 RMKWKK-DNKLKSMS 32783
 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 31/66 (46%), Positives = 44/66 (65%)
 Frame = +1

Query: 320   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
             GR+ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK  
Sbjct: 29299 GRRGRQTYTRFQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 29478

Query: 380   NKLKTT 385
               L TT
Sbjct: 29479 KLLNTT 29496
 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +1

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R+ R  YT  QL ELE+E+  NK++ + +R  I+A  +L+ERQV +WFQNRR+K K+
Sbjct: 71860 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 72030
 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 29/57 (50%), Positives = 42/57 (72%)
 Frame = +2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             ++ R  YT+ Q+ ELE+E+  N+++T+ +R  I+ T  LSERQV IWFQNRR+K KK
Sbjct: 45368 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 45538
 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 28/54 (51%), Positives = 39/54 (71%)
 Frame = +3

Query: 324   RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R  +T  QL ELE+E+  NK++T+ +R  I+A   L+E QV IWFQNRR+K+KK
Sbjct: 77985 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQVKIWFQNRRMKQKK 78146
 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 26/57 (45%), Positives = 40/57 (69%)
 Frame = +2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             ++ R  YT  QL ELE+E+  N+++ + +R  ++   NL+ERQ+ IWFQNRR+K KK
Sbjct: 65615 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 65785
 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 26/57 (45%), Positives = 40/57 (69%)
 Frame = +2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             ++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK
Sbjct: 20435 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 20605
>emb|X68975.1|NVHOXC N.viridescens mRNA for Hoxc-10
          Length = 1279

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 248 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKK 427

Query: 378 V 378
           +
Sbjct: 428 M 430
>gb|AF298185.1|AF298185 Ambystoma mexicanum homeodomain protein Hoxc10 long form (Hoxc10)
           mRNA, complete cds, alternatively spliced
          Length = 1846

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 813 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKK 992

Query: 378 V 378
           +
Sbjct: 993 M 995
>gb|AF031245.1|AF031245 Ambystoma mexicanum homeobox transcription factor (Hoxd-10) mRNA,
           partial cds
          Length = 369

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 139 KSGRKKRSPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 318

Query: 378 V 378
           +
Sbjct: 319 M 321
>gb|AF144893.1|AF144893 Priapulus caudatus abdominal-B homeodomain protein (Abd-B) gene,
           partial cds
          Length = 345

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 36/68 (52%), Positives = 48/68 (69%)
 Frame = +3

Query: 310 HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQ 369
           +P + +S    RKKR PYTK Q  ELE+E+  N +++K KR  ++ T NL+ERQV IWFQ
Sbjct: 66  NPLEWTSNVSVRKKRKPYTKYQTLELEKEFLFNAYVSKQKRWELARTLNLTERQVKIWFQ 245

Query: 370 NRRVKEKK 377
           NRR+K KK
Sbjct: 246 NRRMKSKK 269
>ref|NM_002142.1| Homo sapiens homeo box A9 (HOXA9), mRNA
          Length = 597

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 388 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 567

Query: 378 V 378
           +
Sbjct: 568 I 570
>gb|U20941.1|AMU20941 Ambystoma mexicanum homeobox protein Hox-A9 mRNA, partial cds
          Length = 450

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 226 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 405

Query: 378 V 378
           +
Sbjct: 406 I 408
>ref|NM_010456.1| Mus musculus homeo box A9 (Hoxa9), mRNA
          Length = 2271

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 1873 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 2052

Query: 378  V 378
            +
Sbjct: 2053 I 2055
>dbj|AB005457.1|AB005457 Mus musculus mRNA for Hoxa-9, complete cds
          Length = 2271

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 1873 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 2052

Query: 378  V 378
            +
Sbjct: 2053 I 2055
>emb|X13537.1|CSHOX17B Guinea pig mRNA for Hox-1.7 protein (GPK/5)
          Length = 1083

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 363 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 542

Query: 378 V 378
           +
Sbjct: 543 I 545
>gb|U41813.1|HSU41813 Human class I homeoprotein (HOXA9) mRNA, partial cds
          Length = 1433

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 181 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 360

Query: 378 V 378
           +
Sbjct: 361 I 363
>gb|U92573.1|FRU92573 Fugu rubripes homeobox protein HOXA-9 (FrHOXA-10) gene, complete cds;
            and homeodomain protein HOXA-9 (FrHOXA-9) gene, complete
            cds
          Length = 13583

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 36/73 (49%), Positives = 52/73 (70%), Gaps = 3/73 (4%)
 Frame = +2

Query: 309  SHPSDASSY---RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
            S P +A ++   + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS  + L++RQV 
Sbjct: 4394 SKPDNAGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKVSTLTDRQVK 4573

Query: 366  IWFQNRRVKEKKV 378
            IWFQNRR+K KK+
Sbjct: 4574 IWFQNRRMKLKKM 4612
 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 33/57 (57%), Positives = 44/57 (76%)
 Frame = +3

Query: 321  RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            RKKR PYTK Q+ ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 9489 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 9659
>gb|U81511.1|HSU81511 Homo sapiens HOXA-9A and HOXA-9B (HOXA-9) gene, alternatively
            spliced, complete cds
          Length = 6671

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 5922 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 6101

Query: 378  V 378
            +
Sbjct: 6102 I 6104
>gb|AF071268.1|AF071268 Danio rerio homeobox protein (hoxd9a) gene, complete cds
          Length = 1400

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 1143 RSTRKKRCPYTKYQTLELEKEFLYNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 1322

Query: 378  V 378
            +
Sbjct: 1323 M 1325
>emb|AJ319749.1|XLA319749 Xenopus laevis partial mRNA for homebox protein Hoxa9 (hoxa9 gene)
          Length = 357

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 19  RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 198

Query: 378 V 378
           +
Sbjct: 199 I 201
>ref|XM_088184.1| Homo sapiens homeo box A9 (HOXA9), mRNA
          Length = 2036

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 663 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 842

Query: 378 V 378
           +
Sbjct: 843 I 845
>ref|XM_002545.1| Homo sapiens homeo box D9 (HOXD9), mRNA
          Length = 1134

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 853 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 1032

Query: 378 V 378
           +
Sbjct: 1033M 1035
>ref|NM_014213.1| Homo sapiens homeo box D9 (HOXD9), mRNA
          Length = 1133

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 853 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 1032

Query: 378 V 378
           +
Sbjct: 1033M 1035
>gb|AF071248.1|AF071248 Danio rerio homeobox protein (hoxa9a) gene, complete cds
          Length = 1900

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 36/64 (56%), Positives = 48/64 (74%)
 Frame = +2

Query: 321  RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
            RKKR PYTK Q+ ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK  N
Sbjct: 1088 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK-FN 1264

Query: 381  KLKT 384
            K +T
Sbjct: 1265 KNET 1276
>emb|X59372.1|HSHOX4C Human HOX4C mRNA for a homeobox protein
          Length = 1133

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 853 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 1032

Query: 378 V 378
           +
Sbjct: 1033M 1035
>gb|M28449.1|MUSHOXA Mouse Hox-1.7 protein mRNA, 3' end
          Length = 821

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 79  RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 258

Query: 378 V 378
           +
Sbjct: 259 I 261
>emb|X97750.1|GGHOXA9 G.gallus mRNA for Hoxa-9 protein
          Length = 577

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 301 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 480

Query: 378 V 378
           +
Sbjct: 481 I 483
>emb|X13536.1|CSHOX17A Guinea pig mRNA for Hox-1.7 protein (GPK/6)
          Length = 995

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 280 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 459

Query: 378 V 378
           +
Sbjct: 460 I 462
>gb|BC006537.1|BC006537 Homo sapiens, clone MGC:1934 IMAGE:2987903, mRNA, complete cds
          Length = 2065

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 672 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 851

Query: 378 V 378
           +
Sbjct: 852 I 854
>gb|BC010023.1|BC010023 Homo sapiens, Similar to homeo box A9, clone MGC:19648
           IMAGE:2987818, mRNA, complete cds
          Length = 2065

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 672 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 851

Query: 378 V 378
           +
Sbjct: 852 I 854
>gb|AF010258.1|AF010258 Homo sapiens homeodomain protein (HOXA9EC) gene, complete cds
          Length = 3325

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 2121 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 2300

Query: 378  V 378
            +
Sbjct: 2301 I 2303
>emb|X61916.1|XBHBEX X.borealis homeobox gene, exon
          Length = 651

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 235 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 414

Query: 378 V 378
           +
Sbjct: 415 I 417
>emb|X62669.1|MMHOX4 M.musculus genes HOX-4.4 and Hox-4.5
          Length = 8601

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 7599 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 7778

Query: 378  V 378
            +
Sbjct: 7779 M 7781
 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            + GR+KR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 2520 KSGREKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 2699

Query: 378  V 378
            +
Sbjct: 2700 M 2702
>emb|X15506.1|HSHOX52 Human Hox5.2 gene fragment
          Length = 240

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 28  RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 207

Query: 378 V 378
           +
Sbjct: 208 M 210
>gb|U82759.1|HSU82759 Human homeodomain protein HoxA9 mRNA, complete cds
          Length = 917

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 638 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLFNLTERQVKIWFQNRRMKMKK 817

Query: 378 V 378
           +
Sbjct: 818 I 820
>emb|X13147.1|TGHB4 Sea urchin HB4 gene for homeo domain protein
          Length = 420

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/58 (58%), Positives = 44/58 (75%)
 Frame = +2

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           GRKKR PYTK Q  ELE+E+  N ++T+D+R  I+   +L+ERQV IWFQNRR+K KK
Sbjct: 155 GRKKRCPYTKFQTLELEKEFLFNMYLTRDRRLEIARLLSLTERQVKIWFQNRRMKMKK 328
>gb|U51421.1|DRU51421 Danio rerio Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U51415.1|DPU51415 Devario pathirana Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U51416.1|DMU51416 Devario malabaricus Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U51409.1|DFU51409 Danio frankei Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U51420.1|DDU51420 Devario devario Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|AF254953.1|AF254953 Tripneustes gratilla homeodomain protein TgHBox4 mRNA, complete cds
          Length = 3634

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/58 (58%), Positives = 44/58 (75%)
 Frame = +2

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           GRKKR PYTK Q  ELE+E+  N ++T+D+R  I+   +L+ERQV IWFQNRR+K KK
Sbjct: 881 GRKKRCPYTKFQTLELEKEFLFNMYLTRDRRLEIARLLSLTERQVKIWFQNRRMKMKK 1054
>emb|Y16574.1|LSHOX9 Lineus sanguineus Hox-9 gene
          Length = 272

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 38/72 (52%), Positives = 50/72 (68%), Gaps = 2/72 (2%)
 Frame = +1

Query: 315 SSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 374
           S+  R RKKR PYT+ Q   LE E+ TN +IT+ KR  IS   +L+ERQV +WFQNRR+K
Sbjct: 25  STEPRTRKKRKPYTRYQTMVLENEFLTNSYITRQKRWEISCKLHLTERQVKVWFQNRRMK 204

Query: 375 EKKV--INKLKT 384
            KK+   +K+KT
Sbjct: 205 RKKLNARSKVKT 240
>gb|AF089743.1|AF089743 Morone saxatilis homeodomain protein Hox-A10 (Hoxa10), homeodomain
            protein Hox-A9 (Hoxa9), homeodomain protein Hox-A7
            (Hoxa7), homeodomain protein Hox-A5 (Hoxa5), and
            homeodomain protein Hox-A4 (Hoxa4) genes, complete cds
          Length = 30676

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 33/57 (57%), Positives = 44/57 (76%)
 Frame = +2

Query: 321  RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            RKKR PYTK Q+ ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 7472 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 7642
 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +2

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 1817 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVHLTDRQVKIWFQNRRMKLKK 1996

Query: 378  V 378
            +
Sbjct: 1997 M 1999
 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 32/65 (49%), Positives = 46/65 (70%)
 Frame = +2

Query: 320   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
             G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    LSERQ+ IWFQNRR+K KK  
Sbjct: 19967 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK-D 20143

Query: 380   NKLKT 384
             NKLK+
Sbjct: 20144 NKLKS 20158
 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 33/69 (47%), Positives = 46/69 (65%), Gaps = 2/69 (2%)
 Frame = +3

Query: 311   PSDASSYRRG--RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
             P   +SY  G  ++ R  YT+ Q  ELE+E+  N+++T+ +R  I+ T  LSERQV IWF
Sbjct: 30051 PPVNASYTGGVPKRSRTAYTRQQALELEKEFHFNRYLTRRRRVEIAHTMCLSERQVKIWF 30230

Query: 369   QNRRVKEKK 377
             QNRR+K KK
Sbjct: 30231 QNRRMKWKK 30257
 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 26/57 (45%), Positives = 40/57 (69%)
 Frame = +2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             ++ R  Y++ Q  ELE+E+  N+++T+ +R  I+    LSERQ+ IWFQNRR+K KK
Sbjct: 12977 KRGRQTYSRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 13147
>gb|AF353624.1|AF353624 Gallus gallus caudal-type homeobox protein CDXB (CDXB) mRNA,
           complete cds
          Length = 1453

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 52/158 (32%), Positives = 72/158 (44%), Gaps = 6/158 (3%)
 Frame = +1

Query: 230 HQGYAAGPYHHHQPVPGYLDMPVVPGLGG--PGESRHEPLGLP-MESYQPWALPNGWN-- 284
           H G     ++ + P PG         L G  PG+  + P     +    P  LP      
Sbjct: 265 HYGPQREDWNAYGPCPGPSGTAAAAQLSGSSPGQGSYSPAEYSSLHPAAPGGLPPAGTVG 444

Query: 285 GQMYCPKEQTQPPHLW-KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNK 343
            Q   P  Q    + W + T+P      +     R   K RV YT  Q  ELE+E+  N+
Sbjct: 445 TQQVSPTNQRHSSYEWMRKTVPT-----NTTGKTRTKEKYRVVYTDHQRLELEKEFHCNR 609

Query: 344 FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 381
           +IT  ++  ++A   LSERQV IWFQNRR KE+K+I K
Sbjct: 610 YITIRRKSELAANLGLSERQVKIWFQNRRAKERKIIKK 723
>gb|U51423.1|REU51423 Rasbora elegans Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR++ KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMELKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U51414.1|DCU51414 Devario cf. aequipinnatus Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 34/63 (53%), Positives = 47/63 (73%)
 Frame = +2

Query: 316 SYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKE 375
           S + GRKKR PY+K Q  ELE E+  N ++T+++R  IS + NL++RQV IWFQNRR+K 
Sbjct: 17  SAKSGRKKRCPYSKHQTLELEEEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKL 196

Query: 376 KKV 378
           KK+
Sbjct: 197 KKM 205
>dbj|AB026972.1|AB026972 Oryzias latipes mRNA for HOXA9A, complete cds
          Length = 1212

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 33/57 (57%), Positives = 44/57 (76%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           RKKR PYTK Q+ ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 724 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 894
>ref|NM_013554.1| Mus musculus homeo box D10 (Hoxd10), mRNA
          Length = 1023

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GR+KR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 790 KSGREKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 969

Query: 378 V 378
           +
Sbjct: 970 M 972
>emb|X97819.1|TCZEN T.castaneum mRNA for Zen Tc
          Length = 847

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
 Frame = +1

Query: 280 PNGWNGQMYCPKEQTQPPH----LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKEL 335
           P+ WN    CP +   PP+    L   T+ ++       +    G++ R  YT  QL EL
Sbjct: 145 PSDWN----CP-QYNAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRARTAYTSAQLVEL 309

Query: 336 EREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK-VINKLKT 384
           ERE+   K++++ +R +I+   NLSERQ+ IWFQNRR+K KK  +NK+ T
Sbjct: 310 EREFHHGKYLSRPRRIQIAENLNLSERQIKIWFQNRRMKHKKEQMNKVST 459
>emb|X14714.1|MMHOX52 Mus musculus Hox 5.2 gene for homeobox protein
          Length = 180

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 33/58 (56%), Positives = 44/58 (74%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK+
Sbjct: 4   RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 177
>gb|AY052761.1| Euprymna scolopes posterior-2 homeodomain protein (Post2) mRNA,
           partial cds
          Length = 282

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 35/72 (48%), Positives = 46/72 (63%)
 Frame = +1

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           S  S   +GRKKR PYT+ Q   LE E+  + +IT+ KR  IS    L+ERQV +WFQNR
Sbjct: 28  SQGSHETKGRKKRKPYTRYQTMVLENEFLNSSYITRQKRWEISCKLQLTERQVKVWFQNR 207

Query: 372 RVKEKKVINKLK 383
           R+K KK+  + K
Sbjct: 208 RMKRKKLNERAK 243
>dbj|AK002670.1|AK002670 Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:0610025N02:homeo box A10, full insert
           sequence
          Length = 1712

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +3

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 171 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 350

Query: 378 V 378
           +
Sbjct: 351 M 353
>gb|U35632.1|HSU35632 Human insulin promoter factor 1 (PDX-1) mRNA, complete cds
          Length = 942

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/148 (31%), Positives = 71/148 (47%)
 Frame = +3

Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
           A    HHH  +P  L +P            H P G   E  +P  L      Q+  P  +
Sbjct: 246 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVQLPFPWMK 383

Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
           +   H WK       +  + A+     ++ R  YT+ QL ELE+E+  NK+I++ +R  +
Sbjct: 384 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 551

Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINK 381
           +   NL+ER + IWFQNRR+K KK  +K
Sbjct: 552 AVMLNLTERHIKIWFQNRRMKWKKEEDK 635
>ref|NM_008263.1| Mus musculus homeo box A10 (Hoxa10), mRNA
          Length = 2578

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 1023 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 1202

Query: 378  V 378
            +
Sbjct: 1203 M 1205
>gb|L08757.1|MUSHOXAA Mus musculus homeobox protein (Hoxa10) mRNA, complete cds
          Length = 2578

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 1023 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 1202

Query: 378  V 378
            +
Sbjct: 1203 M 1205
>gb|AF281156.1|AF281156 Sus scrofa homeobox protein A10 mRNA, partial cds
          Length = 266

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 35  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 214

Query: 378 V 378
           +
Sbjct: 215 M 217
>ref|XM_088187.1| Homo sapiens hypothetical gene LOC155287 (LOC155287), mRNA
          Length = 1084

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 619 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 798

Query: 378 V 378
           +
Sbjct: 799 M 801
>gb|AF040714.1|AF040714 Homo sapiens homeobox protein A10 (HOXA10) gene, complete cds
          Length = 2691

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 2442 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 2621

Query: 378  V 378
            +
Sbjct: 2622 M 2624
>gb|M30599.1|HUMHOXAC Human homeobox protein mRNA, partial cds., clone PL1
          Length = 249

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 49  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 228

Query: 378 V 378
           +
Sbjct: 229 M 231
>emb|X58430.1|HSHOX18 Homo sapiens Hox1.8 gene for homeobox protein
          Length = 3510

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +3

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 1500 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 1679

Query: 378  V 378
            +
Sbjct: 1680 M 1682
>gb|AF227923.1|AF227923 Tribolium castaneum abdominal-B mRNA, complete cds
          Length = 2683

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 52/158 (32%), Positives = 75/158 (46%), Gaps = 10/158 (6%)
 Frame = +2

Query: 230 HQGYAAGPYHH--HQPVPGYLDMPVVPG--------LGGPGESRHEPLGLPMESYQPWAL 279
           +  Y++   HH  HQPVP YL      G        +       H+  G  + +Y P  +
Sbjct: 599 YSAYSSASRHHVDHQPVP-YLTPADDRGRVAAAAAMVAETASFHHDAAGYGLRNYGPEPV 775

Query: 280 PNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
           P+      Y P        +  S       +P + +     RKKR PY+K Q  ELE+E+
Sbjct: 776 PS----TPYPPPGSLGS--MGVSVPCGTSGNPLEWTGQVTVRKKRKPYSKFQTLELEKEF 937

Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             N +++K KR  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 938 LFNAYVSKQKRWELARNLNLTERQVKIWFQNRRMKNKK 1051
>ref|NM_018951.1| Homo sapiens homeo box A10 (HOXA10), mRNA
          Length = 1491

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +1

Query: 318  RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
            + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 1258 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 1437

Query: 378  V 378
            +
Sbjct: 1438 M 1440
>ref|NM_000209.1| Homo sapiens insulin promoter factor 1, homeodomain transcription
           factor (IPF1), mRNA
          Length = 1525

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/148 (31%), Positives = 71/148 (47%)
 Frame = +1

Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
           A    HHH  +P  L +P            H P G   E  +P  L      Q+  P  +
Sbjct: 331 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVQLPFPWMK 468

Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
           +   H WK       +  + A+     ++ R  YT+ QL ELE+E+  NK+I++ +R  +
Sbjct: 469 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 636

Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINK 381
           +   NL+ER + IWFQNRR+K KK  +K
Sbjct: 637 AVMLNLTERHIKIWFQNRRMKWKKEEDK 720
>emb|X99894.1|HSGSFGENE H.sapiens mRNA coding for insulin promoter factor 1
          Length = 1525

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/148 (31%), Positives = 71/148 (47%)
 Frame = +1

Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
           A    HHH  +P  L +P            H P G   E  +P  L      Q+  P  +
Sbjct: 331 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVQLPFPWMK 468

Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
           +   H WK       +  + A+     ++ R  YT+ QL ELE+E+  NK+I++ +R  +
Sbjct: 469 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 636

Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINK 381
           +   NL+ER + IWFQNRR+K KK  +K
Sbjct: 637 AVMLNLTERHIKIWFQNRRMKWKKEEDK 720
>emb|X14715.1|MMHOX53 Mus musculus Hox 5.3 gene for homeobox protein
          Length = 180

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/59 (55%), Positives = 46/59 (77%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           GR+KR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK+
Sbjct: 1   GREKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKM 177
>dbj|AB049972.1|AB049972 Dugesia japonica mRNA for Hox class homeodomain protein DjAbd-Ba,
            complete cds
          Length = 1477

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 35/80 (43%), Positives = 50/80 (61%)
 Frame = +2

Query: 302  STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
            ST   +    + +S   + RKKR PY++ Q   LE EY  N +IT+ KR  I+   +LSE
Sbjct: 926  STTKSITKSENKSSETVKTRKKRKPYSRYQTMILESEYVGNTYITRQKRWEIACKLHLSE 1105

Query: 362  RQVTIWFQNRRVKEKKVINK 381
            RQ+ +WFQNRR+K KK+ N+
Sbjct: 1106 RQIKVWFQNRRMKTKKIKNR 1165
>gb|U30329.1|HSU30329 Human insulin promoter factor 1 (IPF1) mRNA, complete cds
          Length = 1428

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/148 (31%), Positives = 71/148 (47%)
 Frame = +3

Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
           A    HHH  +P  L +P            H P G   E  +P  L      Q+  P  +
Sbjct: 252 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVQLPFPWMK 389

Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
           +   H WK       +  + A+     ++ R  YT+ QL ELE+E+  NK+I++ +R  +
Sbjct: 390 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 557

Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINK 381
           +   NL+ER + IWFQNRR+K KK  +K
Sbjct: 558 AVMLNLTERHIKIWFQNRRMKWKKEEDK 641
>emb|X87750.1|DRHOXD10G D.rerio Hoxd-10 gene
          Length = 1032

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 766 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVSLTDRQVKIWFQNRRMKLKK 945

Query: 378 V 378
           +
Sbjct: 946 M 948
>emb|X83450.1|CIHBOX4 C.intestinalis DNA for homeobox (214 bp)
          Length = 214

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 31/58 (53%), Positives = 46/58 (78%)
 Frame = +1

Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           R++R PYTK QL ELERE+  N+FI+++ R +I+    L++RQV IWFQNRR+K+K++
Sbjct: 4   RRRRRPYTKYQLSELEREFGANEFISREMREQIAVRVGLNDRQVKIWFQNRRMKKKRM 177
>emb|AJ314827.1|XLA314827 Xenopus laevis partial mRNA for homeobox protein Hox C12 (hoxc12
           gene)
          Length = 509

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 33/70 (47%), Positives = 50/70 (71%)
 Frame = +1

Query: 317 YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 376
           + R RKKR PY+K+QL ELE E+  N+ IT+ +RR +S   +LS++QV IWFQNRR+  K
Sbjct: 226 HTRSRKKRKPYSKIQLAELEGEFMVNEIITRQRRRELSDRLSLSDQQVKIWFQNRRMLRK 405

Query: 377 KVINKLKTTS 386
           +++ + +  S
Sbjct: 406 RLLMREQALS 435
>gb|S61771.1|S61771 Hox-1 cluster: Hox-1.8 {homeobox} [mice, Genomic, 183 nt]
          Length = 183

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 33/59 (55%), Positives = 46/59 (77%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1   GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 177
>emb|Z35149.1|BFHOX9G B.floridae Hox-9 gene for homeobox protein (partial)
          Length = 260

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 35/72 (48%), Positives = 49/72 (67%)
 Frame = +3

Query: 307 VVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
           VV++     +    RKKR PYT+ Q  ELE+E+  N ++T+++R  IS   NL+ERQV I
Sbjct: 6   VVANQPGWMNNHSSRKKRCPYTRFQTLELEKEFLYNMYLTRERRYEISQHVNLTERQVKI 185

Query: 367 WFQNRRVKEKKV 378
           WFQNRR+K KK+
Sbjct: 186 WFQNRRMKMKKM 221
>gb|U51418.1|DAU51418 Danio aff. tweediei Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 33/61 (54%), Positives = 46/61 (75%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PY K Q  ELE+E+  N ++T+++R  IS + NL++RQV IWFQNRR+K KK
Sbjct: 23  KSGRKKRCPYPKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U51417.1|DAU51417 Danio aff. albolineatus Hoxd10 gene, exon 2, partial cds
          Length = 264

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 33/61 (54%), Positives = 46/61 (75%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQV IWF NRR+K KK
Sbjct: 23  KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFPNRRMKLKK 202

Query: 378 V 378
           +
Sbjct: 203 M 205
>gb|U73854.1|MAU73854 Mesocricetus auratus homeodomain protein PDX1 (pdx1) mRNA, complete
           cds
          Length = 1488

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 49/152 (32%), Positives = 73/152 (47%)
 Frame = +1

Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
           A    HHH P    L  P      GP  +  EP GL   S           GQ+  P  +
Sbjct: 325 AVAHLHHHLPAQLGLAHPP----SGPFPNGTEPGGLEEPS----------RGQLPFPWMK 462

Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
           +   H WK       +  + A      ++ R  YT+ QL ELE+E+  NK+I++ +R  +
Sbjct: 463 STKAHAWKGQW----AGGAYAVEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 630

Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
           +   NL+ER + IWFQNRR+K KK  +K +++
Sbjct: 631 AVMLNLTERHIKIWFQNRRMKWKKEEDKKRSS 726
>dbj|D11331.1|MUSHOX18D Mouse Hox 1.8 gene
          Length = 180

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 33/59 (55%), Positives = 46/59 (77%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1   GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 177
>emb|Y07697.1|DRHOXA10 D.rerio HOXA-10 gene exon
          Length = 180

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 33/59 (55%), Positives = 46/59 (77%)
 Frame = +1

Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
           GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1   GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 177
>emb|X62619.1|BMABDBHB B.mori Abd-B gene homeobox
          Length = 240

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 35/69 (50%), Positives = 47/69 (67%)
 Frame = +1

Query: 309 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
           S+P D +     RKKR PY+K Q  ELE+E+  N +++K KR  ++   NL+ERQV IWF
Sbjct: 4   SNPLDWTGQVTVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLNLTERQVKIWF 183

Query: 369 QNRRVKEKK 377
           QNRR+K KK
Sbjct: 184 QNRRMKNKK 210
>emb|AJ131397.1|CSA131397 Cupiennius salei mRNA for abdominal-B
          Length = 2814

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 49/143 (34%), Positives = 69/143 (47%), Gaps = 4/143 (2%)
 Frame = +1

Query: 239 HHHQPVPGYL-DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNG---QMYCPKEQT 294
           H  QPV  +  D P VPG              PM++  P     G       ++CP    
Sbjct: 787 HTPQPVTYFTEDRPRVPG--------------PMDTVYPQTDTYGLRSFPTDVHCPTTYV 924

Query: 295 QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
           Q       +     ++P + +     RKKR PY+K Q  ELE+E+  N +++K KR  ++
Sbjct: 925 QTA---SGSEAMTTTNPLEWTGTVTVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELA 1095

Query: 355 ATTNLSERQVTIWFQNRRVKEKK 377
              NL+ERQV IWFQNRR+K KK
Sbjct: 1096RNLNLTERQVKIWFQNRRMKSKK 1164
>dbj|AB028838.1| Homo sapiens mRNA for homeobox protein GSH-2, complete cds
          Length = 1262

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 34/66 (51%), Positives = 47/66 (70%)
 Frame = +3

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           SDAS    G++ R  +T  QL ELERE+++N ++++ +R  I+   NLSE+QV IWFQNR
Sbjct: 894 SDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNR 1073

Query: 372 RVKEKK 377
           RVK KK
Sbjct: 1074RVKHKK 1091
>dbj|AB027048.1|AB027048 Oryzias latipes MF-Hox13-3 homeobox gene, partial sequence
          Length = 118

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 37/39 (94%), Positives = 37/39 (94%)
 Frame = +2

Query: 328 TKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
           TKVQLKELEREYA NKFITKDKRRRISA TNLSERQVTI
Sbjct: 2   TKVQLKELEREYAPNKFITKDKRRRISAQTNLSERQVTI 118
>gb|AF306344.1|AF306343S2 Homo sapiens homeobox protein 2 (GSH2) gene, exon 2 and complete
           cds
          Length = 491

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 34/66 (51%), Positives = 47/66 (70%)
 Frame = +2

Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
           SDAS    G++ R  +T  QL ELERE+++N ++++ +R  I+   NLSE+QV IWFQNR
Sbjct: 131 SDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNR 310

Query: 372 RVKEKK 377
           RVK KK
Sbjct: 311 RVKHKK 328
>ref|NM_013311.1| Homo sapiens insulin upstream factor 1 (IUF1), mRNA
          Length = 852

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 46/152 (30%), Positives = 73/152 (47%)
 Frame = +1

Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
           A    HHH  +P  L +P            H P G   E  +P  L       +  P  +
Sbjct: 232 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVHLPFPWMK 369

Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
           +   H WK       +  + A+     ++ R  YT+ QL ELE+E+  NK+I++ +R  +
Sbjct: 370 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 537

Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
           +   NL+ER + IWFQNRR+K KK  +K +++
Sbjct: 538 AVMLNLTERHIKIWFQNRRMKWKKEEDKKRSS 633
>gb|AF049893.1|AF049893 Homo sapiens insulin upstream factor 1 (IUF1) mRNA, complete cds
          Length = 852

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 46/152 (30%), Positives = 73/152 (47%)
 Frame = +1

Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
           A    HHH  +P  L +P            H P G   E  +P  L       +  P  +
Sbjct: 232 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVHLPFPWMK 369

Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
           +   H WK       +  + A+     ++ R  YT+ QL ELE+E+  NK+I++ +R  +
Sbjct: 370 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 537

Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
           +   NL+ER + IWFQNRR+K KK  +K +++
Sbjct: 538 AVMLNLTERHIKIWFQNRRMKWKKEEDKKRSS 633
>dbj|AB026967.1|AB026967 Oryzias latipes mRNA for HOXD9A, complete cds
          Length = 923

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 33/61 (54%), Positives = 45/61 (73%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   +L+ERQV IWFQNRR+K KK
Sbjct: 623 RSTRKKRCPYTKYQTLELEKEFLYNMYLTRDRRFEVARILSLTERQVKIWFQNRRMKMKK 802

Query: 378 V 378
           +
Sbjct: 803 M 805
>gb|AF172090.1|AF172090 Caenorhabditis elegans homeodomain protein NOB-1A (nob-1) mRNA,
           complete cds
          Length = 1037

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 35/77 (45%), Positives = 51/77 (65%)
 Frame = +3

Query: 302 STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
           +T P+   H   A S+  G+KKR PY K Q+  LE EY+ N+++T  +R  +SA   L E
Sbjct: 423 ATTPNAAMHLPWAISHD-GKKKRQPYKKDQISRLEYEYSVNQYLTNKRRSELSAQLMLDE 599

Query: 362 RQVTIWFQNRRVKEKKV 378
           +QV +WFQNRR+K+KK+
Sbjct: 600 KQVKVWFQNRRMKDKKL 650
>dbj|AB055742.1|AB055742 Oryzias latipes MF-hoxA13b gene, partial cds
          Length = 118

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 36/39 (92%), Positives = 38/39 (97%)
 Frame = +2

Query: 328 TKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
           TKVQLKELEREYA+NKFITKDKRRRISA TNL+ERQVTI
Sbjct: 2   TKVQLKELEREYASNKFITKDKRRRISAQTNLTERQVTI 118
>ref|NM_067173.1| Caenorhabditis elegans
          Length = 657

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 35/77 (45%), Positives = 51/77 (65%)
 Frame = +1

Query: 302 STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
           +T P+   H   A S+  G+KKR PY K Q+  LE EY+ N+++T  +R  +SA   L E
Sbjct: 358 ATTPNAAMHLPWAISHD-GKKKRQPYKKDQISRLEYEYSVNQYLTNKRRSELSAQLMLDE 534

Query: 362 RQVTIWFQNRRVKEKKV 378
           +QV +WFQNRR+K+KK+
Sbjct: 535 KQVKVWFQNRRMKDKKL 585
>emb|Z22638.1|HMHOXEXNA H.magnipapillata homeobox containing exon
          Length = 1986

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 31/66 (46%), Positives = 48/66 (71%)
 Frame = +1

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           +  ++KR+ Y+K QL ELE+E++ N F+ K++R  ++     S+RQ+ IWFQNRR+K KK
Sbjct: 793 KHSKRKRMSYSKFQLHELEKEFSFNHFLRKERRTELAKLLKFSDRQIKIWFQNRRMKFKK 972

Query: 378 VINKLK 383
            INK+K
Sbjct: 973 EINKVK 990
>gb|AF124593.1|AF124593 Cassiopea xamachana Scox-3 homeodomain protein (Scox-3) mRNA,
           partial cds
          Length = 989

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 5/167 (2%)
 Frame = +1

Query: 216 AEEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQ 275
           A  FS+    +A Y Q           P+  Y ++     L G        L  P++ ++
Sbjct: 118 ATSFSNFTPTYAEYCQSATQPHVSPANPMNSYFELNEASSLSGA-------LAAPLK-HK 273

Query: 276 PWA---LPNGWNGQMYCPKEQTQPPHLW-KSTLPDVVSH-PSDASSYRRGRKKRVPYTKV 330
           P+A         G        T   + W KST P+   + P  +   +  R+KR  YT+ 
Sbjct: 274 PFAELGSHTAAGGDTTGSYPSTFHQYSWLKSTNPEFWRNAPGSSPKPQERRRKRTAYTRK 453

Query: 331 QLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           QL ELE+E+  N F+T+++R +++++ +LSERQ+ IWFQNRR+K KK
Sbjct: 454 QLVELEKEFHFNHFLTRERRLQLASSLSLSERQIKIWFQNRRMKWKK 594
>emb|AJ252182.1|HVU252182 Hydra vulgaris partial cnox-3 gene for homeoprotein
          Length = 370

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 31/66 (46%), Positives = 48/66 (71%)
 Frame = +2

Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
           +  ++KR+ Y+K QL ELE+E++ N F+ K++R  ++     S+RQ+ IWFQNRR+K KK
Sbjct: 17  KHSKRKRMTYSKFQLHELEKEFSFNHFLRKERRTELAKLLKFSDRQIKIWFQNRRMKFKK 196

Query: 378 VINKLK 383
            INK+K
Sbjct: 197 EINKVK 214
  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Feb 19, 2002 12:00 AM
  Number of letters in database: 587,334,133
  Number of sequences in database:  1,164,257
  
Lambda     K      H
   0.317    0.135     0.00 

Gapped
Lambda     K      H
   0.267   0.0410 7.29e-304 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,788,924,736
Number of Sequences: 1164257
Number of extensions: 28132986
Number of successful extensions: 179290
Number of sequences better than 10.0: 3879
Number of HSP's better than 10.0 without gapping: 54977
Number of HSP's successfully gapped in prelim test: 12956
Number of HSP's that attempted gapping in prelim test: 95337
Number of HSP's gapped (non-prelim): 118453
length of query: 386
length of database: 1,627,433,809
effective HSP length: 137
effective length of query: 249
effective length of database: 1,467,930,600
effective search space: 365514719400
effective search space used: 365514719400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)