TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(386 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,164,257 sequences; 587,334,133 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_008264.1| Mus musculus homeo box A13 (Hoxa13), mRNA 488 e-136
ref|XM_004921.1| Homo sapiens homeo box A13 (HOXA13), mRNA 481 e-134
ref|NM_000522.1| Homo sapiens homeo box A13 (HOXA13), mRNA 476 e-132
gb|AY030050.1| Gallus gallus homeo box A13 (HOXA13) mRNA, c... 332 3e-89
gb|U59322.1|MMU59322 Mus musculus transcription factor HOXA... 330 1e-88
gb|AC004080.2| Homo sapiens chromosome 7 clone RP1-170O19, ... 323 2e-86
gb|U82827.1|HSU82827 Human transcription factor HOXA13 (HOX... 318 4e-85
gb|AC107365.2| Danio rerio, clone -241I7, complete sequence 236 2e-60
gb|AF255676.1|AF255676 Homo sapiens homeoprotein C13 (HOXC1... 228 5e-58
ref|NM_017410.1| Homo sapiens homeo box C13 (HOXC13), mRNA 228 5e-58
gb|AF193796.1|AF193796 Mus musculus homeodomain protein (Ho... 228 5e-58
ref|XM_006804.4| Homo sapiens homeo box C13 (HOXC13), mRNA 228 5e-58
gb|AF263466.2|AF263466 Homo sapiens HOXC13 (HOXC13) mRNA, c... 228 5e-58
gb|BC002754.1|BC002754 Homo sapiens, homeo box C13, clone M... 228 5e-58
dbj|AK024027.1|AK024027 Homo sapiens cDNA FLJ13965 fis, clo... 228 9e-58
ref|NM_008267.1| Mus musculus homeo box B13 (Hoxb13), mRNA 220 2e-55
gb|U57051.1|MMU57051 Mus musculus Hoxb-13 mRNA, complete cds 220 2e-55
gb|BC013639.1|BC013639 Mus musculus, homeo box B13, clone M... 220 2e-55
gb|BC007092.1|BC007092 Homo sapiens, homeo box B13, clone M... 216 2e-54
gb|U57052.1|HSU57052 Human Hoxb-13 mRNA, complete cds 216 2e-54
ref|XM_030437.1| Homo sapiens homeo box B13 (HOXB13), mRNA 216 2e-54
gb|U81599.1|HSU81599 Homo sapiens homeodomain protein HOXB1... 214 8e-54
ref|NM_006361.2| Homo sapiens homeo box B13 (HOXB13), mRNA 214 8e-54
ref|NM_000523.1| Homo sapiens homeo box D13 (HOXD13), mRNA 209 3e-52
gb|L09550.1|CHKHOXD13A Chicken homeobox protein hoxd13 mRNA... 209 3e-52
gb|U20942.1|AMU20942 Ambystoma mexicanum homeobox protein H... 209 4e-52
ref|NM_008275.1| Mus musculus homeo box D13 (Hoxd13), mRNA 207 1e-51
emb|X99291.1|MMHOXD13 M.musculus hoxd-13 gene 207 1e-51
gb|AF298184.1|AF298184 Ambystoma mexicanum homeodomain prot... 190 2e-46
emb|X87752.1|DRHOXD13G D.rerio Hoxd-13 gene 162 4e-38
emb|AJ314743.1|XLA314743 Xenopus laevis partial mRNA for ho... 148 7e-34
gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, co... 137 2e-30
gb|AC107364.1| Danio rerio, clone -10O19, complete sequence 136 3e-30
gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, comp... 131 9e-29
gb|AF071242.1|AF071242 Danio rerio homeobox protein (hoxa13... 131 1e-28
gb|AF224263.1|AF224263 Heterodontus francisci Evx2 (evx2), ... 130 3e-28
gb|AF071241.1|AF071241 Danio rerio homeobox protein (hoxa13... 128 8e-28
gb|AC015584.18| Mus musculus, clone RP23-400H17, complete s... 128 1e-27
gb|L35012.1|MUSHOXAE Mus musculus (clone cos2W3H) Hox gene ... 127 2e-27
gb|AF005220.1|HUMTFHOXD2 Homo sapiens transcription factor ... 127 2e-27
dbj|AB038155.1|AB038155 Homo sapiens mRNA for NUP98-HOXD13 ... 127 2e-27
gb|AC009336.13|AC009336 Homo sapiens chromosome 2, clone RP... 127 2e-27
dbj|AB032481.1|AB032481 Homo sapiens HOXD13 gene for homeob... 127 2e-27
gb|AC091179.5| Homo sapiens chromosome 17, clone CTD-2377D2... 125 5e-27
dbj|D10290.1|CHKCHOX4G Gallus gallus Chox-4g gene for homeo... 125 6e-27
gb|S80553.1|S80553 HOX-4 complex: Hox-4.8=homeobox gene [mi... 124 2e-26
emb|AJ335159.1|HSA335159 Homo sapiens genomic sequence surr... 120 2e-25
gb|AF071261.1|AF071261 Danio rerio homeobox protein (hoxc13... 119 5e-25
emb|Y07699.1|DRHOXA13 D.rerio HOXA-13 gene, partial 117 2e-24
gb|AF071262.1|AF071262 Danio rerio homeobox protein (hoxc13... 112 7e-23
emb|AJ335615.1|HSA335615 Homo sapiens genomic sequence surr... 106 3e-21
gb|BC016712.1|BC016712 Homo sapiens, clone IMAGE:4108342, mRNA 103 3e-20
emb|AJ324355.1|HSA324355 Homo sapiens genomic sequence surr... 96 7e-18
gb|AF005219.1|HUMTFHOXD1 Homo sapiens transcription factor ... 91 1e-16
emb|AJ335415.1|HSA335415 Homo sapiens genomic sequence surr... 91 1e-16
ref|NM_014212.1| Homo sapiens homeo box C11 (HOXC11), mRNA 86 4e-15
emb|AJ000041.1|HSHOXC11P Homo sapiens mRNA for HOXC11 86 4e-15
gb|BC001543.1|BC001543 Homo sapiens, homeo box C11, clone M... 86 4e-15
ref|XM_012215.3| Homo sapiens homeo box C11 (HOXC11), mRNA 86 4e-15
gb|M81249.1|CHKHOXA Gallus gallus homeodomain-containing pr... 86 7e-15
gb|AF151672.1|AF151672 Nereis virens Post1 homeobox protein... 84 2e-14
emb|X99679.1|HSHOXC13 H.sapiens mRNA for HOXC13 protein 84 3e-14
gb|M81250.1|CHKHOXB Gallus gallus homeodomain-containing pr... 83 4e-14
ref|NM_021192.1| Homo sapiens homeo box D11 (HOXD11), mRNA 83 4e-14
emb|AJ319668.1|XLA319668 Xenopus laevis partial mRNA for ho... 83 5e-14
gb|AF031481.1|AF031481 Ambystoma mexicanum homeobox transcr... 83 5e-14
ref|NM_008273.1| Mus musculus homeo box D11 (Hoxd11), mRNA 82 6e-14
emb|X57674.1|NVNVHBOX2 N.viridescens RNA for homeobox gene ... 82 6e-14
ref|NM_005523.3| Homo sapiens homeo box A11 (HOXA11), mRNA 82 6e-14
dbj|D10288.1|CHKCHOX4E Gallus gallus Chox-4e gene for homeo... 82 1e-13
emb|X60395.1|MMHOX46 M.musculus Hox-4.6 gene 82 1e-13
emb|X71422.1|MMHOXD11 M.musculus Hoxd-11 gene 82 1e-13
emb|X60762.1|MMHOX46E2 M.musculus Hox-4.6 gene, exon 2 82 1e-13
gb|AF154915.1|AF154915 Homo sapiens transcription factor HO... 82 1e-13
gb|U20370.1|MMU20370 Mus musculus homeobox protein (Hoxa11)... 81 2e-13
ref|NM_010450.1| Mus musculus homeo box A11 (Hoxa11), mRNA 81 2e-13
gb|AF071164.1|AF071164 Homo sapiens homeobox A11 (HOXA11) g... 80 2e-13
gb|AF039307.1|AF039307 Homo sapiens homeobox A11 (HOXA11) g... 80 2e-13
gb|AF287137.1|AF287137 Danio rerio Hoxa-11b gene, complete cds 80 3e-13
gb|AF287136.1|AF287136 Danio aequipinnatus Hoxa-11b gene, c... 80 3e-13
emb|X58849.1|MMHOX47 Murine Hox-4.7 gene 80 3e-13
gb|AF144679.1|AF144679 Lingula anatina Post-1 homeodomain p... 80 4e-13
gb|AF287138.1|AF287138 Danio rerio Hoxa-11a gene, complete cds 80 4e-13
gb|AF042652.1|AF042652 Strongylocentrotus purpuratus homeod... 80 4e-13
ref|NM_008274.1| Mus musculus homeo box D12 (Hoxd12), mRNA 80 4e-13
gb|U20371.1|MMU20371 Mus musculus homeobox protein (Hoxa11)... 80 4e-13
gb|BC015565.1|BC015565 Homo sapiens, homeo box B9, clone MG... 79 5e-13
gb|L35011.1|MUSHOXAD Mus musculus (clone cos2W3E) Hox gene ... 79 5e-13
gb|AF328962.1|AF328963S2 Homo sapiens HOXC12 gene, exon 2 a... 79 5e-13
ref|NM_024017.1| Homo sapiens homeo box B9 (HOXB9), mRNA 79 5e-13
emb|X83451.1|CIHBOX5 C.intestinalis DNA for homeobox (435 bp) 79 5e-13
emb|X62019.1|GGGHOX G.gallus Ghox 4.7 mRNA 79 7e-13
gb|L35010.1|MUSHOXAC Mus musculus (clone cos2W3A) Hox gene ... 79 7e-13
gb|AF276815.1|AF276815 Branchiostoma floridae homeodomain-c... 79 7e-13
ref|XM_087004.1| Homo sapiens similar to homeo box D12 (LOC... 79 7e-13
emb|X87751.1|DRHOXD11G D.rerio Hoxd-11 gene 79 7e-13
ref|XM_010803.1| Homo sapiens homeo box D12 (HOXD12), mRNA 79 7e-13
dbj|D10289.1|CHKCHOX4F Gallus gallus Chox-4f gene for homeo... 79 7e-13
gb|AF071260.1|AF071260 Danio rerio homeobox protein (hoxc12... 79 9e-13
gb|M34857.1|MUSHOX25A Mouse Hox-2.5 mRNA 79 9e-13
ref|XM_028620.2| Homo sapiens homeo box C9 (HOXC9), mRNA 79 9e-13
dbj|AK056414.1|AK056414 Homo sapiens cDNA FLJ31852 fis, clo... 79 9e-13
dbj|AK000445.1|AK000445 Homo sapiens cDNA FLJ20438 fis, clo... 79 9e-13
dbj|AB026968.1|AB026968 Oryzias latipes gene for HOXD9B, pa... 78 1e-12
dbj|AK056123.1|AK056123 Homo sapiens cDNA FLJ31561 fis, clo... 78 1e-12
gb|AF071258.1|AF071258 Danio rerio homeobox protein (hoxc11... 78 2e-12
gb|AY014296.1|AY014295S2 Homo sapiens HOXB9 gene, exon 2 an... 77 2e-12
gb|S66855.1|S66855 HoxB9=Hox-2.5 [mice, embryos, mRNA Parti... 77 2e-12
emb|X16172.1|HSHOX25 Human HOX-2.5 gene for homeodomain pro... 77 2e-12
dbj|AK012173.1|AK012173 Mus musculus 10 days embryo whole b... 77 2e-12
gb|AF071259.1|AF071259 Danio rerio homeobox protein (hoxc11... 77 2e-12
ref|NM_008272.1| Mus musculus homeo box C9 (Hoxc9), mRNA 77 2e-12
emb|X55318.1|MMHOX32A Mus musculus Hox-3.2 gene 77 2e-12
emb|X07647.1|MMHOX32 Mouse mRNA for Hox 3.2 protein 77 2e-12
gb|AC011194.15|AC011194 Mus musculus chromosome 11, clone R... 77 2e-12
gb|M35603.1|MUSHOXMAA Mouse Hox-3.1 gene and Hox-3.2-Hox-3.... 77 2e-12
gb|U61980.1|OAU61980 Ovis aries Hoxc-9 mRNA, partial cds 77 2e-12
gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone R... 77 2e-12
gb|AY014302.1|AY014301S2 Homo sapiens HOXC9 gene, exon 2 an... 77 2e-12
emb|Y07698.1|DRHOXA11 D.rerio HOXA-11 gene, partial 77 2e-12
gb|S76303.1|S76303 Hox-C|Hox-3 {clone 27b} [rats, Sprague-D... 77 2e-12
gb|U31564.1|HEU31564 Heliocidaris erythrogramma HEHBOX7 (He... 77 3e-12
gb|AF071240.1|AF071240 Danio rerio homeobox protein (hoxa11... 77 3e-12
emb|Z35150.1|BFHOX10G B.floridae Hox-10 gene for homeobox p... 77 3e-12
ref|NM_021193.1| Homo sapiens homeo box D12 (HOXD12), mRNA 77 3e-12
gb|AF071250.1|AF071250 Danio rerio homeobox protein (hoxb10... 77 3e-12
ref|XM_028621.1| Homo sapiens homeo box C10 (HOXC10), mRNA 77 3e-12
gb|U05571.1|SCU05571 Styela clava Ascidian homeobox protein... 77 3e-12
gb|BC001293.1|BC001293 Homo sapiens, homeo box C10, clone M... 77 3e-12
gb|AF071267.1|AF071267 Danio rerio homeobox protein (hoxc9a... 77 3e-12
gb|AF255675.1|AF255675 Homo sapiens homeoprotein C10 (HOXC1... 77 3e-12
ref|NM_017409.1| Homo sapiens homeo box C10 (HOXC10), mRNA 77 3e-12
gb|AF075754.2|AF075754 Holothuria glaberrima homeodomain-co... 77 3e-12
emb|X63507.1|MMHOX35 M.musculus HOX-3.5 gene 77 3e-12
gb|U05600.1|SPU05600 Styela plicata Ascidian homeobox prote... 77 3e-12
gb|S73920.1|S73920 Styela clava DNA binding protein AHox2 (... 77 3e-12
gb|S73921.1|S73921 AHox3 [Styela plicata, Genomic, 180 nt] 77 3e-12
gb|BC019150.1|BC019150 Mus musculus, homeo box D9, clone MG... 76 5e-12
ref|XM_011611.3| Homo sapiens homeo box A10 (HOXA10), mRNA 76 5e-12
gb|BC007600.1|BC007600 Homo sapiens, clone IMAGE:3347294, mRNA 76 5e-12
gb|AF453292.1|AF453292 Sus scrofa homeobox A11 mRNA, partia... 76 5e-12
gb|AF071256.1|AF071256 Danio rerio homeobox protein (hoxb9a... 76 5e-12
gb|BC013971.1|BC013971 Homo sapiens, clone MGC:12859 IMAGE:... 76 5e-12
ref|NM_013555.1| Mus musculus homeo box D9 (Hoxd9), mRNA 76 5e-12
dbj|D11330.1|MUSHOX36C Mouse Hox 3.6 gene 76 5e-12
gb|U92572.1|FRU92572 Fugu rubripes homeobox protein HOXC-9 ... 76 5e-12
dbj|AB026969.1|AB026969 Oryzias latipes mRNA for HOXB9A, pa... 76 5e-12
gb|AY052760.1| Euprymna scolopes posterior-1 homeodomain pr... 76 6e-12
dbj|AB026970.1|AB026970 Oryzias latipes mRNA for HOXC9A, co... 76 6e-12
dbj|AB049973.1|AB049973 Dugesia japonica mRNA for Hox class... 75 8e-12
ref|NM_002148.1| Homo sapiens homeo box D10 (HOXD10), mRNA 75 8e-12
emb|X59373.1|HSHOX4D Human HOX4D mRNA for a homeobox protein 75 8e-12
gb|BC013463.1|BC013463 Mus musculus, clone MGC:18685 IMAGE:... 75 8e-12
gb|U51413.1|RPU51413 Rasbora paviei Hoxd10 gene, exon 2, pa... 75 8e-12
gb|U51422.1|RHU51422 Rasbora heteromorpha Hoxd10 gene, exon... 75 8e-12
gb|U51412.1|DPU51412 Danio pulcher Hoxd10 gene, exon 2, par... 75 8e-12
gb|U51411.1|DKU51411 Danio kerri Hoxd10 gene, exon 2, parti... 75 8e-12
emb|X87753.1|DRHOXD12G D.rerio Hoxd-12 gene 75 8e-12
emb|X68976.1|NVHOXD N.viridescens mRNA for Hoxd-10 75 8e-12
gb|U31600.1|HEU31600 Heliocidaris erythrogramma HEHBOX10 (H... 75 8e-12
dbj|D10287.1|CHKCHOX4D Gallus gallus Chox-4d gene for homeo... 75 8e-12
gb|AF298186.1|AF298186 Ambystoma mexicanum homeodomain prot... 75 1e-11
gb|AF151673.1|AF151673 Nereis virens Post2 homeobox protein... 75 1e-11
gb|AF224262.1|AF224262 Heterodontus francisci HoxA10 (HoxA1... 75 1e-11
emb|X68975.1|NVHOXC N.viridescens mRNA for Hoxc-10 75 1e-11
gb|AF298185.1|AF298185 Ambystoma mexicanum homeodomain prot... 75 1e-11
gb|AF031245.1|AF031245 Ambystoma mexicanum homeobox transcr... 75 1e-11
gb|AF144893.1|AF144893 Priapulus caudatus abdominal-B homeo... 75 1e-11
ref|NM_002142.1| Homo sapiens homeo box A9 (HOXA9), mRNA 75 1e-11
gb|U20941.1|AMU20941 Ambystoma mexicanum homeobox protein H... 75 1e-11
ref|NM_010456.1| Mus musculus homeo box A9 (Hoxa9), mRNA 75 1e-11
dbj|AB005457.1|AB005457 Mus musculus mRNA for Hoxa-9, compl... 75 1e-11
emb|X13537.1|CSHOX17B Guinea pig mRNA for Hox-1.7 protein (... 75 1e-11
gb|U41813.1|HSU41813 Human class I homeoprotein (HOXA9) mRN... 75 1e-11
gb|U92573.1|FRU92573 Fugu rubripes homeobox protein HOXA-9 ... 75 1e-11
gb|U81511.1|HSU81511 Homo sapiens HOXA-9A and HOXA-9B (HOXA... 75 1e-11
gb|AF071268.1|AF071268 Danio rerio homeobox protein (hoxd9a... 75 1e-11
emb|AJ319749.1|XLA319749 Xenopus laevis partial mRNA for ho... 75 1e-11
ref|XM_088184.1| Homo sapiens homeo box A9 (HOXA9), mRNA 75 1e-11
ref|XM_002545.1| Homo sapiens homeo box D9 (HOXD9), mRNA 75 1e-11
ref|NM_014213.1| Homo sapiens homeo box D9 (HOXD9), mRNA 75 1e-11
gb|AF071248.1|AF071248 Danio rerio homeobox protein (hoxa9a... 75 1e-11
emb|X59372.1|HSHOX4C Human HOX4C mRNA for a homeobox protein 75 1e-11
gb|M28449.1|MUSHOXA Mouse Hox-1.7 protein mRNA, 3' end 75 1e-11
emb|X97750.1|GGHOXA9 G.gallus mRNA for Hoxa-9 protein 75 1e-11
emb|X13536.1|CSHOX17A Guinea pig mRNA for Hox-1.7 protein (... 75 1e-11
gb|BC006537.1|BC006537 Homo sapiens, clone MGC:1934 IMAGE:2... 75 1e-11
gb|BC010023.1|BC010023 Homo sapiens, Similar to homeo box A... 75 1e-11
gb|AF010258.1|AF010258 Homo sapiens homeodomain protein (HO... 75 1e-11
emb|X61916.1|XBHBEX X.borealis homeobox gene, exon 75 1e-11
emb|X62669.1|MMHOX4 M.musculus genes HOX-4.4 and Hox-4.5 75 1e-11
emb|X15506.1|HSHOX52 Human Hox5.2 gene fragment 75 1e-11
gb|U82759.1|HSU82759 Human homeodomain protein HoxA9 mRNA, ... 74 2e-11
emb|X13147.1|TGHB4 Sea urchin HB4 gene for homeo domain pro... 74 2e-11
gb|U51421.1|DRU51421 Danio rerio Hoxd10 gene, exon 2, parti... 74 2e-11
gb|U51415.1|DPU51415 Devario pathirana Hoxd10 gene, exon 2,... 74 2e-11
gb|U51416.1|DMU51416 Devario malabaricus Hoxd10 gene, exon ... 74 2e-11
gb|U51409.1|DFU51409 Danio frankei Hoxd10 gene, exon 2, par... 74 2e-11
gb|U51420.1|DDU51420 Devario devario Hoxd10 gene, exon 2, p... 74 2e-11
gb|AF254953.1|AF254953 Tripneustes gratilla homeodomain pro... 74 2e-11
emb|Y16574.1|LSHOX9 Lineus sanguineus Hox-9 gene 74 2e-11
gb|AF089743.1|AF089743 Morone saxatilis homeodomain protein... 74 2e-11
gb|AF353624.1|AF353624 Gallus gallus caudal-type homeobox p... 74 2e-11
gb|U51423.1|REU51423 Rasbora elegans Hoxd10 gene, exon 2, p... 74 2e-11
gb|U51414.1|DCU51414 Devario cf. aequipinnatus Hoxd10 gene,... 74 2e-11
dbj|AB026972.1|AB026972 Oryzias latipes mRNA for HOXA9A, co... 74 2e-11
ref|NM_013554.1| Mus musculus homeo box D10 (Hoxd10), mRNA 74 2e-11
emb|X97819.1|TCZEN T.castaneum mRNA for Zen Tc 74 2e-11
emb|X14714.1|MMHOX52 Mus musculus Hox 5.2 gene for homeobox... 74 2e-11
gb|AY052761.1| Euprymna scolopes posterior-2 homeodomain pr... 74 3e-11
dbj|AK002670.1|AK002670 Mus musculus adult male kidney cDNA... 74 3e-11
gb|U35632.1|HSU35632 Human insulin promoter factor 1 (PDX-1... 74 3e-11
ref|NM_008263.1| Mus musculus homeo box A10 (Hoxa10), mRNA 74 3e-11
gb|L08757.1|MUSHOXAA Mus musculus homeobox protein (Hoxa10)... 74 3e-11
gb|AF281156.1|AF281156 Sus scrofa homeobox protein A10 mRNA... 74 3e-11
ref|XM_088187.1| Homo sapiens hypothetical gene LOC155287 (... 74 3e-11
gb|AF040714.1|AF040714 Homo sapiens homeobox protein A10 (H... 74 3e-11
gb|M30599.1|HUMHOXAC Human homeobox protein mRNA, partial c... 74 3e-11
emb|X58430.1|HSHOX18 Homo sapiens Hox1.8 gene for homeobox ... 74 3e-11
gb|AF227923.1|AF227923 Tribolium castaneum abdominal-B mRNA... 74 3e-11
ref|NM_018951.1| Homo sapiens homeo box A10 (HOXA10), mRNA 74 3e-11
ref|NM_000209.1| Homo sapiens insulin promoter factor 1, ho... 74 3e-11
emb|X99894.1|HSGSFGENE H.sapiens mRNA coding for insulin pr... 74 3e-11
emb|X14715.1|MMHOX53 Mus musculus Hox 5.3 gene for homeobox... 74 3e-11
dbj|AB049972.1|AB049972 Dugesia japonica mRNA for Hox class... 74 3e-11
gb|U30329.1|HSU30329 Human insulin promoter factor 1 (IPF1)... 74 3e-11
emb|X87750.1|DRHOXD10G D.rerio Hoxd-10 gene 74 3e-11
emb|X83450.1|CIHBOX4 C.intestinalis DNA for homeobox (214 bp) 73 4e-11
emb|AJ314827.1|XLA314827 Xenopus laevis partial mRNA for ho... 73 4e-11
gb|S61771.1|S61771 Hox-1 cluster: Hox-1.8 {homeobox} [mice,... 73 4e-11
emb|Z35149.1|BFHOX9G B.floridae Hox-9 gene for homeobox pro... 73 4e-11
gb|U51418.1|DAU51418 Danio aff. tweediei Hoxd10 gene, exon ... 73 4e-11
gb|U51417.1|DAU51417 Danio aff. albolineatus Hoxd10 gene, e... 73 4e-11
gb|U73854.1|MAU73854 Mesocricetus auratus homeodomain prote... 73 4e-11
dbj|D11331.1|MUSHOX18D Mouse Hox 1.8 gene 73 4e-11
emb|Y07697.1|DRHOXA10 D.rerio HOXA-10 gene exon 73 4e-11
emb|X62619.1|BMABDBHB B.mori Abd-B gene homeobox 73 4e-11
emb|AJ131397.1|CSA131397 Cupiennius salei mRNA for abdominal-B 73 5e-11
dbj|AB028838.1| Homo sapiens mRNA for homeobox protein GSH-... 73 5e-11
dbj|AB027048.1|AB027048 Oryzias latipes MF-Hox13-3 homeobox... 73 5e-11
gb|AF306344.1|AF306343S2 Homo sapiens homeobox protein 2 (G... 73 5e-11
ref|NM_013311.1| Homo sapiens insulin upstream factor 1 (IU... 72 7e-11
gb|AF049893.1|AF049893 Homo sapiens insulin upstream factor... 72 7e-11
dbj|AB026967.1|AB026967 Oryzias latipes mRNA for HOXD9A, co... 72 7e-11
gb|AF172090.1|AF172090 Caenorhabditis elegans homeodomain p... 72 7e-11
dbj|AB055742.1|AB055742 Oryzias latipes MF-hoxA13b gene, pa... 72 7e-11
ref|NM_067173.1| Caenorhabditis elegans 72 7e-11
emb|Z22638.1|HMHOXEXNA H.magnipapillata homeobox containing... 72 7e-11
gb|AF124593.1|AF124593 Cassiopea xamachana Scox-3 homeodoma... 72 7e-11
emb|AJ252182.1|HVU252182 Hydra vulgaris partial cnox-3 gene... 72 7e-11
dbj|AB026971.1|AB026971 Oryzias latipes mRNA for HOXA9B, co... 72 8e-11
gb|AF124594.1|AF124594 Cassiopea xamachana Scox-4 homeodoma... 72 1e-10
gb|AF172092.1|AF172092 Caenorhabditis elegans homeodomain p... 72 1e-10
dbj|D11329.1|MUSHOX35B Mouse Hox 3.5 mRNA 72 1e-10
ref|NM_067172.1| Homeobox domain 72 1e-10
gb|S79041.1|S79041 Gsh-2=dispersed homeobox gene [mice, NIH... 71 1e-10
emb|Y07696.1|DRHOXA9 D.rerio HOXA-9 gene exon 71 1e-10
gb|AF071249.1|AF071249 Danio rerio homeobox protein (hoxa9b... 71 1e-10
ref|NM_010451.1| Mus musculus homeo box A2 (Hoxa2), mRNA 71 2e-10
gb|M95599.1|MUSHOMEO Mus musculus homeobox-containing prote... 71 2e-10
emb|X69161.1|SGABDBG S.gregaria Abd-B gene 71 2e-10
gb|M93292.1|MUSHOX111B Mouse homeobox protein (Hox1.11) mRN... 71 2e-10
gb|U04838.1|MMU04838 Mus musculus C57BL/6J homeobox protein... 71 2e-10
ref|NM_012581.1| Rattus norvegicus homeobox A2 (Hoxa2), mRNA 71 2e-10
gb|M91802.1|RATHOX111A Rattus norvegicus homeobox protein (... 71 2e-10
dbj|AB027049.1|AB027049 Oryzias latipes MF-Hox13-2 homeobox... 70 2e-10
ref|XM_062808.2| Homo sapiens similar to bA438F9.1 (novel p... 70 2e-10
dbj|AB044157.1|AB044157 Homo sapiens mRNA for homeobox prot... 70 2e-10
dbj|AB027047.1|AB027047 Oryzias latipes MF-Hox13-1 homeobox... 70 3e-10
gb|J03770.1|MUSHOX42A Mouse homeobox protein (hox-4.2) mRNA... 70 4e-10
emb|AJ133025.1|MAB133025 Megaselia abdita zen gene, exons 1-2 70 4e-10
gb|AF124592.1|AF124592 Cassiopea xamachana Scox-2 homeodoma... 70 4e-10
gb|AY036893.1| Podocoryne carnea transcription factor Cnox4... 69 6e-10
gb|AF321227.1|AF321227 Tribolium castaneum Ftz (ftz), Scr (... 69 6e-10
gb|AF071257.1|AF071257 Danio rerio homeobox protein (hoxc10... 69 6e-10
emb|AJ005421.1|TCAJ5421 Tribolium castaneum mRNA for caudal... 69 6e-10
ref|NM_022852.1| Rattus norvegicus pancreatic and duodenal ... 69 7e-10
gb|U04833.1|RNU04833 Rattus norvegicus NEDH islet/duodenum ... 69 7e-10
gb|S67435.1|S67435 somatostatin transactivating factor-1 [r... 69 7e-10
ref|NM_013553.1| Mus musculus homeo box C4 (Hoxc4), mRNA 69 9e-10
emb|X69019.1|MMHOX35MR M.musculus Hox-3.5 mRNA 69 9e-10
gb|AF144680.1|AF144680 Lingula anatina Post-2 homeodomain p... 69 9e-10
emb|X74323.1|GDHOXA2 G.gallus mRNA for Hoxa2 protein 69 9e-10
emb|X16134.1|DMABDBP3 Drosophila Abd-B P3 mRNA 69 9e-10
gb|AF144892.1|AF144892 Priapulus caudatus HB4 homeodomain p... 69 9e-10
gb|M21173.1|DROBXCA D.melanogaster iab-7 mRNA, partial cds,... 69 9e-10
ref|XM_082445.1| Abdominal B, mRNA 69 9e-10
emb|X15080.1|DMBX189B Drosophila pH189 mRNA of distal BX-C ... 69 9e-10
gb|AF043432.2|AF043432 Gallus gallus Mox-1 related protein ... 69 9e-10
dbj|AK016033.1|AK016033 Mus musculus adult male testis cDNA... 69 9e-10
dbj|AK020261.1|AK020261 Mus musculus adult male cecum cDNA,... 69 9e-10
ref|NM_080157.1| Drosophila melanogaster Abdominal B (Abd-B... 69 9e-10
emb|X51663.1|DMABDBCLA D.melanogaster RNA for Abd-B gene, c... 69 9e-10
ref|NM_008814.1| Mus musculus pancreatic and duodenal homeo... 69 9e-10
emb|X74342.1|MMIPF1 M.musculus mRNA for IPF1 protein 69 9e-10
gb|M26884.1|XELHOXAB2 X.laevis homeobox protein (Hox1A) gen... 69 9e-10
ref|NM_014620.1| Homo sapiens homeo box C4 (HOXC4), mRNA 69 9e-10
emb|X07495.1|HSHOX329 Human mRNA for cp19 homeobox from HOX... 69 9e-10
ref|NM_008178.1| Mus musculus genomic screened homeo box 1 ... 68 1e-09
gb|U21224.1|MMU21224 Mus musculus homeobox Gsh-1 mRNA, comp... 68 1e-09
ref|NM_010469.1| Mus musculus homeo box D4 (Hoxd4), mRNA 68 1e-09
gb|U32943.1|SAU32943 Schistocerca americana Antennapedia ho... 68 1e-09
ref|NG_000242.1| Drosophila melanogaster bicoid (bcd) on ch... 68 1e-09
emb|AL390738.4|AL390738 Human DNA sequence from clone RP11-... 68 1e-09
gb|AE003674.2|AE003674 Drosophila melanogaster genomic scaf... 68 1e-09
emb|X68347.1|SZEN1A Drosophila sp. zerknuellt (zen) z1 gene 68 1e-09
gb|U04302.1|U04302 Xenopus laevis homeobox protein (xCAD2) ... 68 1e-09
gb|AE001572.2|AE001572 Drosophila melanogaster Antennapedia... 68 1e-09
ref|NM_057445.1| Drosophila melanogaster zerknullt (zen), t... 68 1e-09
gb|AC002512.1|AC002512 Drosophila melanogaster (P1 DS00276 ... 68 1e-09
gb|AC095014.1| Drosophila melanogaster, chromosome 3R, regi... 68 1e-09
dbj|AB044158.1|AB044158 Homo sapiens gene for homeobox prot... 68 1e-09
gb|U19238.1|AMU19238 Ambystoma mexicanum homeobox protein (... 68 1e-09
ref|NG_000212.1| Drosophila melanogaster zerknullt (zen) on... 68 1e-09
emb|X16849.1|XLHBOX8 Xenopus laevis XlHbox 8 gene for homeo... 68 1e-09
gb|AF417198.1|AF417198 Silurana tropicalis cad2 mRNA, compl... 68 2e-09
gb|AF071234.1|AF071234 Petromyzon marinus homeobox protein ... 68 2e-09
ref|NM_057606.1| Drosophila melanogaster caudal (cad), tran... 68 2e-09
gb|AF080565.1|AF080565 Anopheles gambiae Antennapedia homeo... 68 2e-09
gb|AY069565.1| Drosophila melanogaster LD29596 full length ... 68 2e-09
gb|AF052054.1|AF052054 Pristionchus pacificus homeotic prot... 68 2e-09
ref|NG_000352.1| Drosophila melanogaster caudal (cad) on ch... 67 2e-09
emb|X57158.1|CHCHOXM Chicken CHOX M mRNA for HOX-4.3-relate... 67 2e-09
gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome ... 67 2e-09
gb|AE003668.3|AE003668 Drosophila melanogaster genomic scaf... 67 2e-09
gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence... 67 2e-09
emb|X07104.1|XLHBOX4 Xenopus mRNA containing homeobox (XlHb... 67 2e-09
gb|M62870.1|HYDCNOX2A Hydra vulgaris antennapedia class hom... 67 2e-09
dbj|D16683.1|BMOSHOWA Silkworm mRNA, homeobox gene caudal (... 67 2e-09
gb|AF417197.1|AF417197 Silurana tropicalis cad1 mRNA, compl... 67 2e-09
gb|S79684.1|S79684S1 Hirudo medicinalis homeobox protein (L... 67 2e-09
emb|AJ277388.1|HVU277388 Hydra vulgaris mRNA for cnox-2 hom... 67 2e-09
gb|BC011082.1|BC011082 Mus musculus, Similar to mesenchyme ... 67 3e-09
ref|NM_005193.1| Homo sapiens caudal type homeo box transcr... 67 3e-09
gb|AF239666.1|AF239666 Homo sapiens CDX1 homeobox protein (... 67 3e-09
ref|XM_008351.3| Homo sapiens mesenchyme homeo box 1 (MEOX1... 67 3e-09
gb|U15212.1|HSU15212 Human caudal-type homeobox protein (CD... 67 3e-09
gb|AF031246.1|AF031246 Ambystoma mexicanum homeobox transcr... 67 3e-09
gb|AF112141.1|AF112141 Oryzias latipes homeodomain transcri... 67 3e-09
ref|XM_003791.1| Homo sapiens caudal type homeo box transcr... 67 3e-09
gb|U51095.1|HSU51095 Human homeobox protein Cdx1 mRNA, comp... 67 3e-09
ref|NM_001804.1| Homo sapiens caudal type homeo box transcr... 67 3e-09
gb|L20432.1|XELMOX2 Xenopus laevis homeobox protein (MOX2) ... 67 3e-09
ref|NM_004527.1| Homo sapiens mesenchyme homeo box 1 (MEOX1... 67 3e-09
emb|Z15103.1|MMMOX1G M.musculus Mox-1 mRNA 67 3e-09
gb|U10492.1|HSMOX1 Human Mox1 protein (MOX1) mRNA, complete... 67 3e-09
ref|NM_010791.1| Mus musculus mesenchyme homeobox 1 (Meox1)... 67 3e-09
emb|Z14313.1|HRLOX2MR H.robusta Lox2 mRNA 67 4e-09
gb|AF137385.1| Helobdella triserialis LOX18 homeodomain pro... 67 4e-09
ref|NM_019558.1| Homo sapiens homeo box D8 (HOXD8), mRNA 67 4e-09
emb|X68324.1|BRHOX34A B.rerio hox-3.4 gene for homeobox pro... 67 4e-09
ref|NM_007674.1| Mus musculus caudal type homeo box 4 (Cdx4... 67 4e-09
gb|L08061.1|MUSCDX4A Mus musculus homeobox protein (cdx 4) ... 67 4e-09
ref|NM_006735.1| Homo sapiens homeo box A2 (HOXA2), mRNA 67 4e-09
gb|U92575.1|FRU92575 Fugu rubripes homeobox protein HOXB-4 ... 67 4e-09
emb|AJ401088.1|GGA401088 Gallus gallus mRNA for MOX-2 protein 67 4e-09
emb|X17566.1|HMLOX2G H.medicinalis Lox2 gene (homeobox gene) 67 4e-09
ref|NM_008268.1| Mus musculus homeo box B5 (Hoxb5), mRNA 66 5e-09
gb|M26283.1|MUSHOX21A Mouse homeobox (Hox2.1) protein mRNA,... 66 5e-09
gb|U41840.1|EDU41840 Eleutheria dichotoma Cnox3 homeodomain... 66 5e-09
gb|AF071247.1|AF071247 Danio rerio homeobox protein (hoxa5a... 66 5e-09
emb|X66958.1|BRCAD1 B.rerio caudal homeobox mRNA ZF-cad1 66 5e-09
gb|AF151696.1|AF151696 Pristionchus pacificus MAB-5 mRNA, c... 66 5e-09
ref|XM_008561.1| Homo sapiens homeo box B5 (HOXB5), mRNA 66 5e-09
gb|AF245689.1|AF245689 Acropora millepora homeodomain prote... 66 5e-09
dbj|AK012146.1|AK012146 Mus musculus 10 days embryo whole b... 66 5e-09
dbj|AB046532.1|AB046532 Gallus gallus CdxA mRNA for caudal-... 66 5e-09
dbj|AB026955.1|AB026955 Oryzias latipes mRNA for HOXC4A, co... 66 5e-09
emb|AJ005422.1|TCAJ5422 Tribolium castaneum mRNA for caudal... 66 5e-09
emb|X04706.1|HSHOM4 Human homeobox gene (clone HHO.c13) 66 5e-09
emb|X80668.1|CCCDX1 C.carpio cdx1 mRNA 66 5e-09
ref|NM_002147.1| Homo sapiens homeo box B5 (HOXB5), mRNA 66 5e-09
gb|M92299.1|HUMHOX2A Human homeobox 2.1 protein (HOX2A) mRN... 66 5e-09
gb|AF085283.1|AF085283 Nematostella vectensis hox2 protein ... 66 5e-09
gb|M26679.1|HUMHOX13G Homo sapiens homeobox protein (HOX-1.... 66 5e-09
dbj|AB030175.1|AB030175 Dicyema orientale mRNA for DoxC, co... 66 5e-09
gb|M20705.1|DROANTPRB D.melanogaster antennapedia gene (Ant... 66 6e-09
gb|M20704.1|DROANTPRA Drosophila melanogaster antennapedia ... 66 6e-09
ref|NM_079525.1| Drosophila melanogaster Antennapedia (Antp... 66 6e-09
gb|BC016763.1|BC016763 Homo sapiens, clone MGC:22628 IMAGE:... 66 6e-09
ref|XM_042818.1| Homo sapiens homeo box D4 (HOXD4), mRNA 66 6e-09
gb|S76300.1|S76300 Hox-B|Hox-2 {clone 17b} [rats, Sprague-D... 66 6e-09
emb|X03062.1|DMCAD Drosophila caudal (cad) mRNA fragment wi... 66 6e-09
gb|M21070.1|DROCADA2 D.melanogaster caudal gene (cad) encod... 65 8e-09
emb|X16846.1|GDGHOX21 Chicken homeobox gene Ghox 2.1 fragment 65 8e-09
emb|Z35143.1|BFHOX2G B.floridae Hox-2 gene for homeobox pro... 65 8e-09
ref|NM_010453.1| Mus musculus homeo box A5 (Hoxa5), mRNA 65 8e-09
emb|X12802.1|BRRZF21 Zebrafish mRNA for homeotic protein ZF-21 65 8e-09
emb|X07381.1|BRHOX21 Zebrafish Hox-2.1 gene homologue (ZF-21) 65 8e-09
emb|X68248.1|BRHOX2A B.rerio DNA hox-2.1 and hox-2.2 genes 65 8e-09
ref|XM_040801.1| Homo sapiens homeo box A5 (HOXA5), mRNA 65 8e-09
ref|NM_019102.1| Homo sapiens homeo box A5 (HOXA5), mRNA 65 8e-09
gb|AF287967.1|AF287967 Homo sapiens homeobox B7 (HOXB7) gen... 65 8e-09
ref|NM_014621.1| Homo sapiens homeo box D4 (HOXD4), mRNA 65 8e-09
emb|AL645798.2| Zebrafish DNA sequence from clone XX-227H09... 65 8e-09
emb|X16840.1|MMHX13 Mouse Hox 1.3 mRNA for a homeodomain pr... 65 8e-09
gb|M36604.1|MUSHOX13B Mouse homeobox 1.3 protein mRNA, comp... 65 8e-09
gb|AF071253.1|AF071253 Danio rerio homeobox protein (hoxb5b... 65 8e-09
emb|X52672.1|GGCHOXA Chicken Chox-a mRNA for homeodomain pr... 65 8e-09
gb|BC011063.1|BC011063 Mus musculus, Similar to homeo box A... 65 8e-09
gb|K02572.1|HUMHOM2 Human putative homeo box Hu1 65 8e-09
gb|M28021.1|MUSHOX13A Mouse homeo domain protein (Hox 1.3) ... 65 8e-09
emb|Y00208.1|MMHOX13 Mouse Hox 1.3 gene for homeo domain pr... 65 8e-09
dbj|AB050887.1|AB050887 Branchiostoma floridae DNA, enhance... 65 8e-09
gb|AF052463.1|AF052463 Branchiostoma floridae homeobox prot... 65 8e-09
emb|X03033.1|MMHOBOX1 Mus musculus gene for homeo-box prote... 65 8e-09
dbj|AB028207.1|AB028207 Branchiostoma floridae AmphiHox2 ge... 65 8e-09
dbj|AB026962.1|AB026962 Oryzias latipes gene for HOXB5B, pa... 65 8e-09
gb|BC013682.1|BC013682 Homo sapiens, clone MGC:9376 IMAGE:3... 65 8e-09
gb|M13373.1|DROANTDFD D.melanogaster (ANT-C locus) deformed... 65 1e-08
ref|NM_024016.1| Homo sapiens homeo box B8 (HOXB8), mRNA 65 1e-08
emb|X95414.1|DTHOXA Girardia tigrina DthoxA gene, partial 65 1e-08
gb|AF036325.1|AF036325 Danio rerio homeobox protein PDX-1 (... 65 1e-08
emb|Z32525.1|DTDNBIPR D.tigrina mRNA for DNA-binding protein 65 1e-08
gb|AE003673.2|AE003673 Drosophila melanogaster genomic scaf... 65 1e-08
emb|X13721.1|MMHOX24 Murine Hox-2.4 mRNA 65 1e-08
gb|S70444.1|S70444 Hoxa-4 [mice, testis, Genomic, 3002 nt] 65 1e-08
emb|X66861.1|MMHOX14B Mus musculus Hox-1.4 gene 65 1e-08
dbj|AB029759.1|AB029759 Paralichthys olivaceus mRNA for Hox... 65 1e-08
emb|X68045.1|BFHOMEOG B.floridae gene for amphihox3 65 1e-08
ref|NG_000557.1| Drosophila melanogaster Deformed (Dfd) on ... 65 1e-08
emb|X05136.1|DMDFD Drosophila mRNA for Deformed (Dfd) protein 65 1e-08
dbj|D83534.1|D83534 Bombyx mori Dfd mRNA, complete cds 65 1e-08
ref|NM_057853.1| Drosophila melanogaster Deformed (Dfd), tr... 65 1e-08
ref|NM_057320.1| Drosophila melanogaster proboscipedia (pb)... 65 1e-08
gb|S67058.1|S67058 Hoxa-4/Hox-1.4=Hoxa-4 [mice, Genomic, 25... 65 1e-08
gb|AF004387.1|AF004387 Helobdella robusta homeodomain prote... 65 1e-08
gb|AF124591.1|AF124591 Cassiopea xamachana Scox-1 homeodoma... 65 1e-08
ref|NM_010836.1| Mus musculus homeo box, msh-like 3 (Msx3),... 65 1e-08
gb|U62523.1|MMU62523 Mus musculus Msx3 mRNA, complete cds 65 1e-08
gb|M18399.1|MUSHOX24A Mouse homeo box (Hox2.4) region 65 1e-08
gb|AF104002.1|AF104002 Thermobia domestica abdominal-B prot... 65 1e-08
gb|M37565.1|RATHOMBX1A Rat homeobox protein R1a gene, compl... 65 1e-08
gb|AF035573.1|AF035573 Oryzias latipes developmental transc... 65 1e-08
dbj|AB024407.1|AB024407 Dugesia japonica mRNA for PLOX3-Dj,... 65 1e-08
emb|X99630.1|HSHOXC11 H.sapiens mRNA for HOXC11 protein, ex... 65 1e-08
gb|AF228509.1|AF228509 Tribolium castaneum prothoraxless mR... 65 1e-08
emb|X64626.1|CVCNOX2 C.viridissima homeobox gene cnox2 mRNA 65 1e-08
gb|AF277988.1|AF277988 Caenorhabditis briggsae LIN-39 mRNA,... 64 2e-08
ref|XM_088266.1| Homo sapiens mesenchyme homeo box 2 (growt... 64 2e-08
gb|AF187068.1|AF187068 Tribolium castaneum clone pcmxp5 pro... 64 2e-08
gb|L36328.1|HUMGAX Homo sapiens GAX mRNA, complete cds 64 2e-08
gb|AF452568.1|AF452568 Tribolium castaneum homeodomain tran... 64 2e-08
gb|S82178.1|S82168S2 IPF-1=insulin promoter factor 1 [human... 64 2e-08
emb|Z16406.1|MOX2A Mus musculus Mox-2A mRNA 64 2e-08
ref|NM_057322.1| Drosophila melanogaster proboscipedia (pb)... 64 2e-08
ref|NM_066253.1| C. elegans homeobox gene lin-39 64 2e-08
ref|NM_002141.1| Homo sapiens homeo box A4 (HOXA4), mRNA 64 2e-08
emb|AJ334855.1|HSA334855 Homo sapiens genomic sequence surr... 64 2e-08
gb|U81038.1|TCU81038 Tribolium castaneum transcription fact... 64 2e-08
gb|M74297.1|HUMHOX14 Human homeobox 1.4 protein mRNA, compl... 64 2e-08
emb|X63728.1|DMPROB D.melanogaster proboscipedia mRNA 64 2e-08
gb|AF363233.1|AF363233 Phascolion strombi homeodomain trans... 64 2e-08
gb|AF268446.1|AF268446 Podocoryne carnea GSX transcription ... 64 2e-08
emb|AL353195.14|AL353195 Human DNA sequence from clone RP11... 64 2e-08
ref|NM_005924.1| Homo sapiens mesenchyme homeo box 2 (growt... 64 2e-08
emb|X82629.1|HSMOX2 H.sapiens mRNA for Mox-2 64 2e-08
dbj|D16684.1|BMOAHP Silkworm mRNA for Antennapedia homologu... 64 2e-08
ref|NM_017149.1| Rattus norvegicus mesenchyme homeobox 2 (M... 64 2e-08
emb|Z17223.1|RNGAXMR R.norvegicus mRNA encoding Gax protein 64 2e-08
emb|AJ327718.1|HSA327718 Homo sapiens genomic sequence surr... 64 2e-08
gb|M24085.1|ZEFZF13A Zebrafish homeobox protein (ZF-13) gen... 64 2e-08
gb|AF071252.1|AF071252 Danio rerio homeobox protein (hoxb4a... 64 2e-08
emb|X92654.2|SGHOX3 S.gregaria mRNA for group 3 homeodomain... 64 2e-08
gb|L19248.1|CELHOMDOMB Caenorhabditis elegans homeodomain p... 64 2e-08
emb|X63729.1|DMAPROB D.melanogaster alternative probosciped... 64 2e-08
gb|AF308821.1|AF308821 Branchiostoma floridae Mnx homeodoma... 64 2e-08
gb|BC002076.1|BC002076 Mus musculus, Similar to mesenchyme ... 64 2e-08
gb|AF461700.1|AF461700 Gallus gallus MOX-2 homeobox mRNA, p... 64 2e-08
gb|U82487.1|BFU82487 Branchiostoma floridae engrailed prote... 64 2e-08
gb|L19639.1|CELLIN39A Caenorhabditis elegans homeobox prote... 64 2e-08
emb|Y16571.1|LSHOX3 Lineus sanguineus Hox-3 gene 64 2e-08
ref|XM_004917.1| Homo sapiens homeo box A4 (HOXA4), mRNA 64 2e-08
ref|NM_057323.1| Drosophila melanogaster proboscipedia (pb)... 64 2e-08
ref|NM_057321.1| Drosophila melanogaster proboscipedia (pb)... 64 2e-08
gb|BC017021.1|BC017021 Homo sapiens, mesenchyme homeo box 2... 64 2e-08
gb|AF035260.1|HUMPDX3 Homo sapiens insulin promoter factor ... 64 2e-08
ref|NM_023963.1| Rattus norvegicus CDX2 protein (Cdx2), mRNA 64 2e-08
emb|AJ278466.1|RNO278466 Rattus norvegicus mRNA for CDX2 pr... 64 2e-08
gb|AF275310.1| Haliotis rufescens Hox5 mRNA, complete cds 64 2e-08
emb|AJ132670.1|DME132670 Drosophila melanogaster buttonless... 64 2e-08
gb|M87803.1|MUSHOX43 Mus musculus homeobox protein (Hox-4.3... 64 2e-08
gb|U51096.1|HSU51096 Human homeobox protein Cdx2 mRNA, comp... 64 2e-08
gb|AC001650.1|AC001650 Drosophila melanogaster DNA sequence... 64 2e-08
ref|NG_000213.1| Drosophila melanogaster zerknullt-related ... 64 2e-08
emb|X56561.1|MMHOX43 Mouse Hox-4.3 gene, homeo box-containi... 64 2e-08
ref|NG_000110.1| Drosophila melanogaster proboscipedia (pb)... 64 2e-08
emb|X79494.1|DHFTZGEN D.hydei fushi tarazu gene 64 2e-08
ref|XM_039995.3| Homo sapiens caudal type homeo box transcr... 64 2e-08
ref|NM_001265.1| Homo sapiens caudal type homeo box transcr... 64 2e-08
emb|Y13709.1|HSCDX2 Homo sapiens caudal-type homeobox gene ... 64 2e-08
gb|AF163858.1|AF163858 Chaetopterus variopedatus homeoprote... 64 2e-08
emb|X68348.1|DSZEN2A Drosophila sp. zerknuellt (zen) z2 gene 64 2e-08
ref|NM_057446.1| Drosophila melanogaster zerknullt-related ... 64 2e-08
gb|AY014294.1|AY014293S2 Homo sapiens HOXB8 gene, exon 2 an... 64 2e-08
gb|M26883.1|XELHOXAB1 X.laevis homeobox protein (Hox1B) gen... 64 2e-08
gb|BC014461.1|BC014461 Homo sapiens, Similar to caudal type... 64 2e-08
emb|AJ130766.1|BFL130766 Branchiostoma floridae mRNA for Ms... 64 2e-08
ref|NM_019247.1| Rattus norvegicus paired-like homeodomain ... 64 2e-08
emb|AJ011005.2|RNO011005 Rattus norvegicus mRNA for Ptx3 pr... 64 2e-08
>ref|NM_008264.1| Mus musculus homeo box A13 (Hoxa13), mRNA
Length = 1318
Score = 488 bits (1255), Expect = e-136
Identities = 240/386 (62%), Positives = 240/386 (62%)
Frame = +2
Query: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME
Sbjct: 107 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 286
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
NQCRNLMAH
Sbjct: 287 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAAAAYSSAPGEAPPSAAAAA 466
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
LPYGYFGSGYYP
Sbjct: 467 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 646
Query: 181 CARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHH 240
CARMGPHPN GPAAEEFSSRAKEFAFYHQGYAAGPYHH
Sbjct: 647 CARMGPHPNAIKSCAQPASAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHH 826
Query: 241 HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 300
HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW
Sbjct: 827 HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 1006
Query: 301 KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 360
KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS
Sbjct: 1007KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 1186
Query: 361 ERQVTIWFQNRRVKEKKVINKLKTTS 386
ERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1187ERQVTIWFQNRRVKEKKVINKLKTTS 1264
>ref|XM_004921.1| Homo sapiens homeo box A13 (HOXA13), mRNA
Length = 1167
Score = 481 bits (1237), Expect = e-134
Identities = 238/388 (61%), Positives = 239/388 (61%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME
Sbjct: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 180
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
NQCRNLMAH
Sbjct: 181 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 360
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
LPYGYFGSGYYP
Sbjct: 361 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 540
Query: 181 CARMGPHPNXXXXXX--XXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
CARMGPHPN GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 541 CARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 720
Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 721 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 900
Query: 299 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 358
LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN
Sbjct: 901 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 1080
Query: 359 LSERQVTIWFQNRRVKEKKVINKLKTTS 386
LSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1081LSERQVTIWFQNRRVKEKKVINKLKTTS 1164
>ref|NM_000522.1| Homo sapiens homeo box A13 (HOXA13), mRNA
Length = 1167
Score = 476 bits (1225), Expect = e-132
Identities = 237/388 (61%), Positives = 238/388 (61%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME
Sbjct: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 180
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
NQCRNLMAH
Sbjct: 181 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 360
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
LPYGYFGSGYYP
Sbjct: 361 AAAAAAAAAAAAASSSGGPGPAGPAAAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 540
Query: 181 CARMGPHPNXXXXXXX--XXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
CARMGP PN GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 541 CARMGPPPNAIKSCPQPPSAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 720
Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 721 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 900
Query: 299 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 358
LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN
Sbjct: 901 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 1080
Query: 359 LSERQVTIWFQNRRVKEKKVINKLKTTS 386
LSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1081LSERQVTIWFQNRRVKEKKVINKLKTTS 1164
>gb|AY030050.1| Gallus gallus homeo box A13 (HOXA13) mRNA, complete cds
Length = 921
Score = 332 bits (851), Expect = 3e-89
Identities = 168/218 (77%), Positives = 178/218 (81%)
Frame = +1
Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
LPYGYFGSGYYPC RM H + EEF+SRAKEFAF
Sbjct: 250 LPYGYFGSGYYPC-RMTHH-----NAIKSCAQPASTFADKYMDTSVSGEEFTSRAKEFAF 411
Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
Y QGYAAGPY QPVPGYLD+PVVP +GGPGE RH+ L LPM+SYQPWA+ NGWNGQ+Y
Sbjct: 412 Y-QGYAAGPY---QPVPGYLDVPVVPTIGGPGEPRHDSL-LPMDSYQPWAITNGWNGQVY 576
Query: 289 CPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKD 348
CPKEQ+QPPHLWKSTLPDVVSHPSDA+SYRRGRKKRVPYTKVQLKELEREYATNKFITKD
Sbjct: 577 CPKEQSQPPHLWKSTLPDVVSHPSDANSYRRGRKKRVPYTKVQLKELEREYATNKFITKD 756
Query: 349 KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 757 KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 870
>gb|U59322.1|MMU59322 Mus musculus transcription factor HOXA13 (Hoxa13) gene, complete
cds
Length = 2280
Score = 330 bits (846), Expect = 1e-88
Identities = 159/305 (52%), Positives = 159/305 (52%)
Frame = +1
Query: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME
Sbjct: 355 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 534
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
NQCRNLMAH
Sbjct: 535 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAAAAYSSAPGEAPPSAAAAA 714
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
LPYGYFGSGYYP
Sbjct: 715 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 894
Query: 181 CARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHH 240
CARMGPHPN GPAAEEFSSRAKEFAFYHQGYAAGPYHH
Sbjct: 895 CARMGPHPNAIKSCAQPASAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHH 1074
Query: 241 HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 300
HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW
Sbjct: 1075HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 1254
Query: 301 KSTLP 305
KSTLP
Sbjct: 1255KSTLP 1269
Score = 163 bits (412), Expect = 3e-38
Identities = 82/83 (98%), Positives = 82/83 (98%)
Frame = +1
Query: 304 LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
L DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 1978 LTDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 2157
Query: 364 VTIWFQNRRVKEKKVINKLKTTS 386
VTIWFQNRRVKEKKVINKLKTTS
Sbjct: 2158 VTIWFQNRRVKEKKVINKLKTTS 2226
>gb|AC004080.2| Homo sapiens chromosome 7 clone RP1-170O19, complete sequence
Length = 129355
Score = 323 bits (828), Expect = 2e-86
Identities = 157/307 (51%), Positives = 158/307 (51%), Gaps = 2/307 (0%)
Frame = -1
Query: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME
Sbjct: 73447 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 73268
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
NQCRNLMAH
Sbjct: 73267 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 73088
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
LPYGYFGSGYYP
Sbjct: 73087 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 72908
Query: 181 CARMGPHPNXXXXXX--XXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
CARMGPHPN GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 72907 CARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 72728
Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 72727 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 72548
Query: 299 LWKSTLP 305
LWKSTLP
Sbjct: 72547 LWKSTLP 72527
Score = 162 bits (410), Expect = 5e-38
Identities = 82/83 (98%), Positives = 82/83 (98%)
Frame = -3
Query: 304 LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
L DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 71819 LLDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 71640
Query: 364 VTIWFQNRRVKEKKVINKLKTTS 386
VTIWFQNRRVKEKKVINKLKTTS
Sbjct: 71639 VTIWFQNRRVKEKKVINKLKTTS 71571
Score = 80.5 bits (197), Expect = 2e-13
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = -3
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S ++ +R RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNR
Sbjct: 56411 SPSTGGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 56232
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 56231 RMKEKKI 56211
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = -2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 37182 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 37003
Query: 378 V 378
+
Sbjct: 37002 I 37000
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = -1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 45502 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 45323
Query: 378 V 378
+
Sbjct: 45322 M 45320
Score = 66.2 bits (160), Expect = 5e-09
Identities = 39/93 (41%), Positives = 57/93 (60%), Gaps = 2/93 (2%)
Frame = -2
Query: 296 PPHLWKSTLPDVVSHPSDASSYR--RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
P LWK+ + + S A + G++ R YT+ Q ELE+E+ N+++T+ +R I
Sbjct: 15513 PGGLWKTGVGG*TADFSIADNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEI 15334
Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
+ LSERQ+ IWFQNRR+K KK NKLK+ S
Sbjct: 15333 AHALCLSERQIKIWFQNRRMKWKK-DNKLKSMS 15238
Score = 64.7 bits (156), Expect = 1e-08
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 13/97 (13%)
Frame = -3
Query: 294 TQPPHL--------WKSTLPDVVSHPSDAS---SYRRGRKKR--VPYTKVQLKELEREYA 340
+ PPHL ++S L ++ S S SY G KR YT+ Q+ ELE+E+
Sbjct: 3032 SSPPHLLSPPPFPLFRSLLLGLLFRGSGFSVNPSYNGGEPKRSRTAYTRQQVLELEKEFH 2853
Query: 341 TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
N+++T+ +R I+ T LSERQV IWFQNRR+K KK
Sbjct: 2852 FNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 2742
Score = 61.2 bits (147), Expect = 1e-07
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = -1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
GR+ R YT+ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+K KK
Sbjct: 19267 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE- 19091
Query: 380 NKL 382
NKL
Sbjct: 19090 NKL 19082
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/57 (45%), Positives = 40/57 (69%)
Frame = -2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+K KK
Sbjct: 28581 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 28411
>gb|U82827.1|HSU82827 Human transcription factor HOXA13 (HOXA13) gene, complete cds
Length = 2014
Score = 318 bits (816), Expect = 4e-85
Identities = 156/307 (50%), Positives = 157/307 (50%), Gaps = 2/307 (0%)
Frame = +1
Query: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME
Sbjct: 109 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 288
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
NQCRNLMAH
Sbjct: 289 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 468
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
LPYGYFGSGYYP
Sbjct: 469 AAAAAAAAAAAAASSSGGPGPAGPAAAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 648
Query: 181 CARMGPHPNXXXXXXX--XXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
CARMGP PN GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 649 CARMGPPPNAIKSCPQPPSAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 828
Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 829 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 1008
Query: 299 LWKSTLP 305
LWKSTLP
Sbjct: 1009LWKSTLP 1029
Score = 162 bits (410), Expect = 5e-38
Identities = 82/83 (98%), Positives = 82/83 (98%)
Frame = +2
Query: 304 LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
L DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 1736 LLDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 1915
Query: 364 VTIWFQNRRVKEKKVINKLKTTS 386
VTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1916 VTIWFQNRRVKEKKVINKLKTTS 1984
>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence
Length = 128411
Score = 236 bits (603), Expect = 2e-60
Identities = 141/264 (53%), Positives = 161/264 (60%), Gaps = 46/264 (17%)
Frame = -3
Query: 169 LPYGYFGSG-YYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAA---EEF-SSRA 223
+ YGYFG G YYPC RM H +A E++ SSRA
Sbjct: 104568 ISYGYFGGGGYYPC-RMSHHHGSGGGVKTCAQSPASGSPYGEKYMDTSASTGEDYTSSRA 104392
Query: 224 KEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP-NG 282
KEFA Y YA+ PY QPVP YLD+PVV + GP E RHE L LPMESYQPWA+ +G
Sbjct: 104391 KEFALY-SSYASSPY---QPVPSYLDVPVVQAISGPSEPRHESL-LPMESYQPWAITTSG 104227
Query: 283 WNGQMYCPKEQTQPPHLWKSTLP------------------------------------- 305
WNGQ+YC KEQ Q ++WKS++P
Sbjct: 104226 WNGQVYCTKEQQQTGNVWKSSIPGKFILRIAKRKKIHINNKLRRYVHLSLNPFNIYVIMN 104047
Query: 306 --DVVSHP-SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER 362
+ VSH +D SS+RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNLSER
Sbjct: 104046 SIESVSHGGADGSSFRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAQTNLSER 103867
Query: 363 QVTIWFQNRRVKEKKVINKLKTTS 386
QVTIWFQNRRVKEKKV+NKLK++S
Sbjct: 103866 QVTIWFQNRRVKEKKVVNKLKSSS 103795
Score = 78.2 bits (191), Expect = 1e-12
Identities = 36/60 (60%), Positives = 48/60 (80%)
Frame = -1
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 95822 RFRKKRCPYTKFQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 95643
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/64 (56%), Positives = 48/64 (74%)
Frame = -2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
RKKR PYTK Q+ ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK N
Sbjct: 83443 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK-FN 83267
Query: 381 KLKT 384
K +T
Sbjct: 83266 KNET 83255
Score = 66.2 bits (160), Expect = 5e-09
Identities = 33/65 (50%), Positives = 47/65 (71%)
Frame = -2
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
G++ R YT+ Q ELE+E+ N+++T+ +R I+ T LSERQ+ IWFQNRR+K KK
Sbjct: 73786 GKRPRTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK-D 73610
Query: 380 NKLKT 384
NKLK+
Sbjct: 73609 NKLKS 73595
Score = 62.8 bits (151), Expect = 5e-08
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Frame = -2
Query: 315 SSYRRG--RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRR 372
+SY G ++ R YT+ Q ELE+E+ N+++T+ +R I+ T LSERQV IWFQNRR
Sbjct: 65905 ASYSGGVPKRSRTAYTRQQALELEKEFHFNRYLTRRRRVEIAHTMCLSERQVKIWFQNRR 65726
Query: 373 VKEKK 377
+K KK
Sbjct: 65725 MKWKK 65711
Score = 61.6 bits (148), Expect = 1e-07
Identities = 30/69 (43%), Positives = 45/69 (64%)
Frame = -1
Query: 309 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
S P A+S ++ R YT QL ELE+E+ N+++ + +R ++ NL+ERQ+ IWF
Sbjct: 55607 SPPGSAAS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 55440
Query: 369 QNRRVKEKK 377
QNRR+K KK
Sbjct: 55439 QNRRMKYKK 55413
Score = 59.7 bits (143), Expect = 4e-07
Identities = 27/54 (50%), Positives = 40/54 (74%)
Frame = -2
Query: 324 RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R ++ QL ELE+E+ NK++T+ +R I+A+ L+E QV IWFQNRR+K+KK
Sbjct: 47275 RTNFSTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKK 47114
Score = 52.0 bits (123), Expect = 9e-05
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = -3
Query: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME 36
MT S+LL PRWI+P VMFLYDNGGGL D+ +KNME
Sbjct: 104841 MTTSLLLRPRWIDP-VMFLYDNGGGL--DDTSKNME 104743
Score = 38.9 bits (89), Expect = 0.80
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = -2
Query: 311 PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 370
P S RRG +R+ + + +EY +++++ +R I L+ER V +WF N
Sbjct: 51235 PYSGLSCRRGGSRRLRTAPLNSFWIRKEYHY-RYLSRPRRVEIVTLLELAER*VKVWF*N 51059
Query: 371 RRVKEKK 377
RR+K K+
Sbjct: 51058 RRIKHKR 51038
>gb|AF255676.1|AF255676 Homo sapiens homeoprotein C13 (HOXC13) mRNA, complete cds
Length = 2402
Score = 228 bits (582), Expect = 5e-58
Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
Frame = +2
Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
L YGY FG YY C R+ + N ++ SSRAKEFA
Sbjct: 470 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 634
Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
FY +A+ +Q +PGYLD+ VVPG+ G E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 635 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 796
Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
YC KEQ+Q HLWKS PDVV + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 797 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 976
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 977 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1084
>ref|NM_017410.1| Homo sapiens homeo box C13 (HOXC13), mRNA
Length = 2402
Score = 228 bits (582), Expect = 5e-58
Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
Frame = +2
Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
L YGY FG YY C R+ + N ++ SSRAKEFA
Sbjct: 470 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 634
Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
FY +A+ +Q +PGYLD+ VVPG+ G E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 635 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 796
Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
YC KEQ+Q HLWKS PDVV + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 797 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 976
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 977 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1084
>gb|AF193796.1|AF193796 Mus musculus homeodomain protein (Hoxc13) mRNA, complete cds
Length = 2451
Score = 228 bits (582), Expect = 5e-58
Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
L YGY FG YY C R+ + N ++ SSRAKEFA
Sbjct: 406 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 570
Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
FY +A+ +Q +PGYLD+ VVPG+ G E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 571 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 732
Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
YC KEQ+Q HLWKS PDVV + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 733 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 912
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 913 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1020
>ref|XM_006804.4| Homo sapiens homeo box C13 (HOXC13), mRNA
Length = 2395
Score = 228 bits (582), Expect = 5e-58
Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
Frame = +2
Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
L YGY FG YY C R+ + N ++ SSRAKEFA
Sbjct: 470 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 634
Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
FY +A+ +Q +PGYLD+ VVPG+ G E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 635 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 796
Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
YC KEQ+Q HLWKS PDVV + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 797 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 976
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 977 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1084
>gb|AF263466.2|AF263466 Homo sapiens HOXC13 (HOXC13) mRNA, complete cds
Length = 2391
Score = 228 bits (582), Expect = 5e-58
Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
L YGY FG YY C R+ + N ++ SSRAKEFA
Sbjct: 427 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 591
Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
FY +A+ +Q +PGYLD+ VVPG+ G E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 592 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 753
Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
YC KEQ+Q HLWKS PDVV + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 754 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 933
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 934 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1041
>gb|BC002754.1|BC002754 Homo sapiens, homeo box C13, clone MGC:3334 IMAGE:3629265, mRNA,
complete cds
Length = 2315
Score = 228 bits (582), Expect = 5e-58
Identities = 125/216 (57%), Positives = 147/216 (67%), Gaps = 1/216 (0%)
Frame = +3
Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
L YGY FG YY C R+ + N ++ SSRAKEFA
Sbjct: 417 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 581
Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
FY +A+ +Q +PGYLD+ VVPG+ G E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 582 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 743
Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
YC KEQ+Q HLWKS PDVV + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK
Sbjct: 744 YCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITK 923
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 924 EKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 1031
>dbj|AK024027.1|AK024027 Homo sapiens cDNA FLJ13965 fis, clone Y79AA1001391, moderately
similar to HOMEOBOX PROTEIN HOX-A13
Length = 1879
Score = 228 bits (580), Expect = 9e-58
Identities = 114/167 (68%), Positives = 134/167 (79%)
Frame = +3
Query: 217 EEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQP 276
++ SSRAKEFAFY +A+ +Q +PGYLD+ VVPG+ G E RH+ L +P+E YQ
Sbjct: 84 DDLSSRAKEFAFY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQH 245
Query: 277 WALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELE 336
WAL NGW+ Q+YC KEQ+Q HLWKS PDVV + SSYRRGRKKRVPYTKVQLKELE
Sbjct: 246 WALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELE 425
Query: 337 REYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
+EYA +KFITK+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 426 KEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 566
>ref|NM_008267.1| Mus musculus homeo box B13 (Hoxb13), mRNA
Length = 861
Score = 220 bits (560), Expect = 2e-55
Identities = 122/223 (54%), Positives = 143/223 (63%), Gaps = 5/223 (2%)
Frame = +1
Query: 169 LPYGYFGSGYYPC--ARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPA-AEEFSSRAKE 225
+PYGYFG GYY C +R P PA EE+ SR E
Sbjct: 235 VPYGYFGGGYYSCRVSRSSLKPCAQTAALATYPSET-----------PAPGEEYPSRPTE 381
Query: 226 FAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNG 285
FAFY GY GPY QP+ YLD+ VV LG PGE RH+ L LP++SYQPWAL GWN
Sbjct: 382 FAFY-PGYP-GPY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQPWALAGGWNS 543
Query: 286 QMYCPKEQTQPPHLWKSTL--PDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNK 343
QM C EQ P WK+ P V P D ++RRGRKKR+PY+K QL+ELEREYA NK
Sbjct: 544 QMCCQGEQNPPGPFWKAAFAEPSVQHPPPDGCAFRRGRKKRIPYSKGQLRELEREYAANK 723
Query: 344 FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
FITKDKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+KT++
Sbjct: 724 FITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKTST 852
>gb|U57051.1|MMU57051 Mus musculus Hoxb-13 mRNA, complete cds
Length = 861
Score = 220 bits (560), Expect = 2e-55
Identities = 122/223 (54%), Positives = 143/223 (63%), Gaps = 5/223 (2%)
Frame = +1
Query: 169 LPYGYFGSGYYPC--ARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPA-AEEFSSRAKE 225
+PYGYFG GYY C +R P PA EE+ SR E
Sbjct: 235 VPYGYFGGGYYSCRVSRSSLKPCAQTAALATYPSET-----------PAPGEEYPSRPTE 381
Query: 226 FAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNG 285
FAFY GY GPY QP+ YLD+ VV LG PGE RH+ L LP++SYQPWAL GWN
Sbjct: 382 FAFY-PGYP-GPY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQPWALAGGWNS 543
Query: 286 QMYCPKEQTQPPHLWKSTL--PDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNK 343
QM C EQ P WK+ P V P D ++RRGRKKR+PY+K QL+ELEREYA NK
Sbjct: 544 QMCCQGEQNPPGPFWKAAFAEPSVQHPPPDGCAFRRGRKKRIPYSKGQLRELEREYAANK 723
Query: 344 FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
FITKDKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+KT++
Sbjct: 724 FITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKTST 852
>gb|BC013639.1|BC013639 Mus musculus, homeo box B13, clone MGC:18675 IMAGE:4207456, mRNA,
complete cds
Length = 1344
Score = 220 bits (560), Expect = 2e-55
Identities = 122/223 (54%), Positives = 143/223 (63%), Gaps = 5/223 (2%)
Frame = +2
Query: 169 LPYGYFGSGYYPC--ARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPA-AEEFSSRAKE 225
+PYGYFG GYY C +R P PA EE+ SR E
Sbjct: 317 VPYGYFGGGYYSCRVSRSSLKPCAQTAALATYPSET-----------PAPGEEYPSRPTE 463
Query: 226 FAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNG 285
FAFY GY GPY QP+ YLD+ VV LG PGE RH+ L LP++SYQPWAL GWN
Sbjct: 464 FAFY-PGYP-GPY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQPWALAGGWNS 625
Query: 286 QMYCPKEQTQPPHLWKSTL--PDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNK 343
QM C EQ P WK+ P V P D ++RRGRKKR+PY+K QL+ELEREYA NK
Sbjct: 626 QMCCQGEQNPPGPFWKAAFAEPSVQHPPPDGCAFRRGRKKRIPYSKGQLRELEREYAANK 805
Query: 344 FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
FITKDKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+KT++
Sbjct: 806 FITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKTST 934
>gb|BC007092.1|BC007092 Homo sapiens, homeo box B13, clone MGC:14711 IMAGE:4250486, mRNA,
complete cds
Length = 1356
Score = 216 bits (551), Expect = 2e-54
Identities = 117/219 (53%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
Frame = +3
Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
+PYGYFG GYY C A EE+ SR EFAF
Sbjct: 318 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 473
Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
Y GY G Y QP+ YLD+ VV LG PGE RH+ L LP++SYQ WAL GWN QM
Sbjct: 474 Y-PGYP-GTY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 635
Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
C EQ P WK+ D HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 636 CQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITK 815
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 816 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 932
>gb|U57052.1|HSU57052 Human Hoxb-13 mRNA, complete cds
Length = 1026
Score = 216 bits (551), Expect = 2e-54
Identities = 117/219 (53%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
Frame = +1
Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
+PYGYFG GYY C A EE+ SR EFAF
Sbjct: 286 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 441
Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
Y GY G YH + YLD+ VV LG PGE RH+ L LP++SYQ WAL GWN QM
Sbjct: 442 Y-PGYP-GTYH---AMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 603
Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
C EQ P WK+ D HP DAS++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 604 CQGEQNPPGPFWKAAFADSSGQHPPDASAFRRGRKKRIPYSKGQLRELEREYAANKFITK 783
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 784 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 900
>ref|XM_030437.1| Homo sapiens homeo box B13 (HOXB13), mRNA
Length = 1269
Score = 216 bits (551), Expect = 2e-54
Identities = 117/219 (53%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
Frame = +2
Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
+PYGYFG GYY C A EE+ SR EFAF
Sbjct: 362 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 517
Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
Y GY G Y QP+ YLD+ VV LG PGE RH+ L LP++SYQ WAL GWN QM
Sbjct: 518 Y-PGYP-GTY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 679
Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
C EQ P WK+ D HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 680 CQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITK 859
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 860 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 976
>gb|U81599.1|HSU81599 Homo sapiens homeodomain protein HOXB13 mRNA, complete cds
Length = 1316
Score = 214 bits (546), Expect = 8e-54
Identities = 116/219 (52%), Positives = 136/219 (61%), Gaps = 1/219 (0%)
Frame = +3
Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
+PYGYFG GYY C A EE+ SR EFAF
Sbjct: 408 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 563
Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
Y GY G YH + YLD+ VV LG PGE RH+ L LP++SYQ WAL GWN QM
Sbjct: 564 Y-PGYP-GTYH---AMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 725
Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
C EQ P WK+ D HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 726 CQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITK 905
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 906 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 1022
>ref|NM_006361.2| Homo sapiens homeo box B13 (HOXB13), mRNA
Length = 1270
Score = 214 bits (546), Expect = 8e-54
Identities = 116/219 (52%), Positives = 136/219 (61%), Gaps = 1/219 (0%)
Frame = +2
Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
+PYGYFG GYY C A EE+ SR EFAF
Sbjct: 362 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 517
Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
Y GY G YH + YLD+ VV LG PGE RH+ L LP++SYQ WAL GWN QM
Sbjct: 518 Y-PGYP-GTYH---AMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 679
Query: 289 CPKEQTQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
C EQ P WK+ D HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITK
Sbjct: 680 CQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITK 859
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
DKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+ K+K ++
Sbjct: 860 DKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSA 976
>ref|NM_000523.1| Homo sapiens homeo box D13 (HOXD13), mRNA
Length = 1147
Score = 209 bits (532), Expect = 3e-52
Identities = 121/226 (53%), Positives = 137/226 (60%), Gaps = 9/226 (3%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N A E
Sbjct: 460 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 639
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE +FY QGY + PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 640 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 792
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
NGWN Q+YC K+Q Q H WKS+ P DV + D YRRGRKKRVPYTK+QLKELE EY
Sbjct: 793 NGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEY 972
Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
A NKFI KDKRRRISA TNLSERQVTIWFQNRRVK+KK+++KLK T
Sbjct: 973 AINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDT 1110
>gb|L09550.1|CHKHOXD13A Chicken homeobox protein hoxd13 mRNA, complete cds
Length = 1964
Score = 209 bits (532), Expect = 3e-52
Identities = 121/224 (54%), Positives = 137/224 (61%), Gaps = 9/224 (4%)
Frame = +2
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N A E S
Sbjct: 257 LGYGYHFGNGYYSCRMSNGVGIQQNALKSPPHASIGGFPVEKYMDVSSLTSTSVPANEVS 436
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE + Y QGY PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 437 TRAKEVSSY-QGYT-NPYQH---VPGYIDMV---STFGSGEPRHETY-ISMEGYQSWTLA 589
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
NGWNGQ+YC K+QTQ H WKS+ P DV + + YRRGRKKRVPYTK+QLKELE EY
Sbjct: 590 NGWNGQVYCAKDQTQSSHFWKSSFPGDVALNQPEMCVYRRGRKKRVPYTKLQLKELENEY 769
Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
A NKFI KDKRRRISA TNLSERQVTIWFQNRRVK+KK+++KLK
Sbjct: 770 AINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLK 901
>gb|U20942.1|AMU20942 Ambystoma mexicanum homeobox protein Hox-A13 mRNA, partial cds
Length = 432
Score = 209 bits (531), Expect = 4e-52
Identities = 100/106 (94%), Positives = 103/106 (96%)
Frame = +1
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYA 340
NGWNGQ+YC KEQ QPPHLWKS+LPDVV HPSDA+SYRRGRKKRVPYTKVQLKELEREYA
Sbjct: 4 NGWNGQVYCSKEQGQPPHLWKSSLPDVVWHPSDANSYRRGRKKRVPYTKVQLKELEREYA 183
Query: 341 TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 184 TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 321
>ref|NM_008275.1| Mus musculus homeo box D13 (Hoxd13), mRNA
Length = 1020
Score = 207 bits (528), Expect = 1e-51
Identities = 120/226 (53%), Positives = 136/226 (60%), Gaps = 9/226 (3%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N E
Sbjct: 361 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPTNEVP 540
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE +FY QGY + PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 541 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 693
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
NGWN Q+YC K+Q Q H WKS+ P DV + D YRRGRKKRVPYTK+QLKELE EY
Sbjct: 694 NGWNSQVYCAKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEY 873
Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
A NKFI KDKRRRISA TNLSERQVTIWFQNRRVK+KK+++KLK T
Sbjct: 874 AINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDT 1011
>emb|X99291.1|MMHOXD13 M.musculus hoxd-13 gene
Length = 1020
Score = 207 bits (528), Expect = 1e-51
Identities = 120/226 (53%), Positives = 136/226 (60%), Gaps = 9/226 (3%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N E
Sbjct: 361 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPTNEVP 540
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE +FY QGY + PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 541 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 693
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
NGWN Q+YC K+Q Q H WKS+ P DV + D YRRGRKKRVPYTK+QLKELE EY
Sbjct: 694 NGWNSQVYCAKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEY 873
Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
A NKFI KDKRRRISA TNLSERQVTIWFQNRRVK+KK+++KLK T
Sbjct: 874 AINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDT 1011
>gb|AF298184.1|AF298184 Ambystoma mexicanum homeodomain protein Hoxb13 (Hoxb13) mRNA,
partial cds
Length = 1360
Score = 190 bits (482), Expect = 2e-46
Identities = 110/214 (51%), Positives = 132/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 174 FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGY 233
FG GYY C R+ P A EE +R KE AFY GY
Sbjct: 2 FGGGYYSC-RVARTP-------LKACSLSGYPAEKYTDTAVAVEE--ARPKELAFY-PGY 148
Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGG-PGESRHEPLGLPMESYQPWALPNGWNGQMYCPKE 292
A GPY QPV YLD+ VV LGG PGE LP E YQPWAL GWN Q+ C K+
Sbjct: 149 A-GPY---QPVASYLDLSVVQSLGGGPGEP------LPAEPYQPWALGGGWNNQVCCSKD 298
Query: 293 QTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRR 352
+ WK+ LPD HP + + +RR RKKRVPY+K QL+ELE+EYA++KFITKD+RR+
Sbjct: 299 PSPAGAPWKTQLPDHGGHPQEGAPFRRDRKKRVPYSKGQLRELEKEYASSKFITKDRRRQ 478
Query: 353 ISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
I+ TNLSERQ+TIWFQNRRVKEKKV +K+K +S
Sbjct: 479 IATATNLSERQITIWFQNRRVKEKKVFSKMKPSS 580
>emb|X87752.1|DRHOXD13G D.rerio Hoxd-13 gene
Length = 771
Score = 162 bits (411), Expect = 4e-38
Identities = 91/160 (56%), Positives = 111/160 (68%)
Frame = +1
Query: 218 EFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPW 277
E SS KEFAFY QG AG Y +P ++D+PVV G+ RHE L ME +Q W
Sbjct: 295 EASSWLKEFAFY-QG-CAGSYPR---IPAFIDLPVVQR-AMMGDRRHETC-LTMEGHQHW 453
Query: 278 ALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELER 337
N + Q+YC ++QT+ PH+WK P + + AS +RGRKKRVPYTK QLKELER
Sbjct: 454 DWSNNCSSQLYCSQDQTRSPHIWK---PSLTEEAAAASFCQRGRKKRVPYTKFQLKELER 624
Query: 338 EYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
EY T KFITK+ RRRI+++TNLSERQVTIWFQNRRVK+KK
Sbjct: 625 EYNTTKFITKENRRRIASSTNLSERQVTIWFQNRRVKDKK 744
>emb|AJ314743.1|XLA314743 Xenopus laevis partial mRNA for homeobox protein (hoxa13 gene)
Length = 390
Score = 148 bits (374), Expect = 7e-34
Identities = 79/142 (55%), Positives = 88/142 (61%)
Frame = +1
Query: 173 YFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQG 232
YFGSGYYPC RM H G A E+F+SR KEFAFY Q
Sbjct: 1 YFGSGYYPC-RMSHHNGIKSCSQPSSFAEKYMDTS-----GSAGEDFASRPKEFAFY-QS 159
Query: 233 YAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKE 292
Y GPY QPVP YLDMPVV +G GE RHEPL LPM+ YQ W + NGWNGQ+YC K+
Sbjct: 160 YPPGPY---QPVPSYLDMPVVSTIGSTGEPRHEPL-LPMDGYQAWPITNGWNGQVYCAKD 327
Query: 293 QTQPPHLWKSTLPDVVSHPSDA 314
Q QP HLWKS+LPDVV H SD+
Sbjct: 328 QAQPTHLWKSSLPDVV-HQSDS 390
>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence
Length = 203106
Score = 137 bits (345), Expect = 2e-30
Identities = 72/97 (74%), Positives = 82/97 (84%), Gaps = 3/97 (3%)
Frame = +1
Query: 290 PKEQTQPPHL--WKSTLP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 346
P ++PPHL + +LP DVV + SSYRRGRKKRVPYTKVQLKELE+EYA +KFIT
Sbjct: 29938 PVALSRPPHLLLYAFSLPLDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFIT 30117
Query: 347 KDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 383
K+KRRRISATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 30118 KEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 30228
Score = 102 bits (253), Expect = 8e-20
Identities = 60/138 (43%), Positives = 76/138 (54%), Gaps = 1/138 (0%)
Frame = +3
Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
L YGY FG YY C R+ + N ++ SSRAKEFA
Sbjct: 24363 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 24527
Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
FY +A+ +Q +PGYLD+ VVPG+ G E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 24528 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 24689
Query: 288 YCPKEQTQPPHLWKSTLP 305
YC KEQ+Q HLWKS P
Sbjct: 24690 YCSKEQSQSAHLWKSPFP 24743
Score = 79.3 bits (194), Expect = 5e-13
Identities = 35/63 (55%), Positives = 50/63 (78%)
Frame = +1
Query: 317 YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 376
+ R RKKR PY+K+QL ELE E+ N+FIT+ +RR +S NLS++QV IWFQNRR+K+K
Sbjct: 41125 HSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKK 41304
Query: 377 KVI 379
+++
Sbjct: 41305 RLL 41313
Score = 79.3 bits (194), Expect = 5e-13
Identities = 39/68 (57%), Positives = 51/68 (74%)
Frame = +2
Query: 311 PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 370
P DA R RKKR PY+K Q++ELERE+ N +I K+KR ++S NL++RQV IWFQN
Sbjct: 59288 PPDAP---RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQN 59458
Query: 371 RRVKEKKV 378
RR+KEKK+
Sbjct: 59459 RRMKEKKL 59482
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 86747 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 86926
Query: 378 VINKLKT 384
+NK KT
Sbjct: 86927 -MNKEKT 86944
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS T NL++RQV IWFQNRR+K KK
Sbjct: 73668 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 73847
Query: 378 V 378
+
Sbjct: 73848 M 73850
Score = 61.2 bits (147), Expect = 1e-07
Identities = 27/58 (46%), Positives = 41/58 (70%)
Frame = +3
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
G++ R YT+ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+K KK
Sbjct: 118059 GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 118232
Score = 60.8 bits (146), Expect = 2e-07
Identities = 27/57 (47%), Positives = 42/57 (73%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q+ ELE+E+ N+++T+ +R I+ + LSERQ+ IWFQNRR+K KK
Sbjct: 138483 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK 138653
Score = 60.8 bits (146), Expect = 2e-07
Identities = 30/63 (47%), Positives = 41/63 (64%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
R R Y++ Q ELE+E+ N ++T+ +R +S L+ERQV IWFQNRR+K KK N
Sbjct: 95397 RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN 95576
Query: 381 KLK 383
K K
Sbjct: 95577 KDK 95585
Score = 58.9 bits (141), Expect = 7e-07
Identities = 29/66 (43%), Positives = 43/66 (64%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
R+ R Y++ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+K KK N
Sbjct: 113580 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN 113759
Query: 381 KLKTTS 386
T S
Sbjct: 113760 LTSTLS 113777
>gb|AC107364.1| Danio rerio, clone -10O19, complete sequence
Length = 96880
Score = 136 bits (343), Expect = 3e-30
Identities = 72/142 (50%), Positives = 85/142 (59%)
Frame = +2
Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
LPYGYFG YYPC RM + EEF SRAKEFAF
Sbjct: 59432 LPYGYFGGSYYPC-RMPK-----------SCTQPTTYGEKYMDTSVSGEEFPSRAKEFAF 59575
Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
Y QGY++GPY QPVP YLD+PVVP L P E RHE L LP+E+YQPWA+ NGW+ +Y
Sbjct: 59576 Y-QGYSSGPY---QPVPSYLDVPVVPALSAPSEPRHESL-LPVETYQPWAITNGWSSPVY 59740
Query: 289 CPKEQTQPPHLWKSTLPDVVSH 310
CPK+QTQ LWKS++ + H
Sbjct: 59741 CPKDQTQSSTLWKSSIQGKMLH 59806
Score = 131 bits (329), Expect = 1e-28
Identities = 65/75 (86%), Positives = 69/75 (91%)
Frame = +2
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
+D +S RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNL+ERQVTIWFQNR
Sbjct: 60194 TDGASVRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAHTNLTERQVTIWFQNR 60373
Query: 372 RVKEKKVINKLKTTS 386
RVKEKKV+NK K S
Sbjct: 60374 RVKEKKVVNKYKGIS 60418
Score = 77.8 bits (190), Expect = 2e-12
Identities = 35/61 (57%), Positives = 49/61 (79%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNRR+KEKK
Sbjct: 69551 QKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 69730
Query: 378 V 378
+
Sbjct: 69731 L 69733
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 75501 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 75680
Query: 378 V 378
+
Sbjct: 75681 M 75683
Score = 71.2 bits (173), Expect = 1e-10
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
RKKR PYTK Q ELE+E+ N ++++D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 80122 RKKRCPYTKHQTLELEKEFLFNMYLSRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 80292
Score = 63.5 bits (153), Expect = 3e-08
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R+ R YT QL ELE+E+ NK++ + +R I+A +L+ERQV +WFQNRR+K K+
Sbjct: 91823 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 91993
Score = 47.4 bits (111), Expect = 0.002
Identities = 24/36 (66%), Positives = 29/36 (79%)
Frame = +2
Query: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME 36
MTAS+LLH RWI+P VMFLYDNG D+++KNME
Sbjct: 59165 MTASLLLHSRWIDP-VMFLYDNG----LDDMSKNME 59257
>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence
Length = 171949
Score = 131 bits (330), Expect = 9e-29
Identities = 69/89 (77%), Positives = 75/89 (83%), Gaps = 4/89 (4%)
Frame = +1
Query: 299 LWKSTLP----DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
L S LP DVV + SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK+KRRRIS
Sbjct: 82570 LTSSRLPYLPADVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRIS 82749
Query: 355 ATTNLSERQVTIWFQNRRVKEKKVINKLK 383
ATTNLSERQVTIWFQNRRVKEKKV++K K
Sbjct: 82750 ATTNLSERQVTIWFQNRRVKEKKVVSKSK 82836
Score = 102 bits (253), Expect = 8e-20
Identities = 60/138 (43%), Positives = 76/138 (54%), Gaps = 1/138 (0%)
Frame = +2
Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFA 227
L YGY FG YY C R+ + N ++ SSRAKEFA
Sbjct: 76865 LGYGYPFGGSYYGC-RLSHNVNLQQKPCAYHPGDKYPEPSGAL----PGDDLSSRAKEFA 77029
Query: 228 FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQM 287
FY +A+ +Q +PGYLD+ VVPG+ G E RH+ L +P+E YQ WAL NGW+ Q+
Sbjct: 77030 FY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVEGYQHWALSNGWDSQV 77191
Query: 288 YCPKEQTQPPHLWKSTLP 305
YC KEQ+Q HLWKS P
Sbjct: 77192 YCSKEQSQSAHLWKSPFP 77245
Score = 79.3 bits (194), Expect = 5e-13
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Frame = +1
Query: 296 PPHLWKSTLPDVVSHPSDASSY---RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRR 352
P LW + P + HP A Y R RKKR PY+K+QL ELE E+ N+FIT+ +RR
Sbjct: 93889 PLILWPT--PAIHLHPG-APWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRE 94059
Query: 353 ISATTNLSERQVTIWFQNRRVKEKKVI 379
+S NLS++QV IWFQNRR+K+K+++
Sbjct: 94060 LSDRLNLSDQQVKIWFQNRRMKKKRLL 94140
Score = 79.3 bits (194), Expect = 5e-13
Identities = 39/68 (57%), Positives = 51/68 (74%)
Frame = +2
Query: 311 PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 370
P DA R RKKR PY+K Q++ELERE+ N +I K+KR ++S NL++RQV IWFQN
Sbjct: 112778 PPDAP---RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQN 112948
Query: 371 RRVKEKKV 378
RR+KEKK+
Sbjct: 112949 RRMKEKKL 112972
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 140063 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 140242
Query: 378 VINKLKT 384
+NK KT
Sbjct: 140243 -MNKEKT 140260
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS T NL++RQV IWFQNRR+K KK
Sbjct: 126817 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 126996
Query: 378 V 378
+
Sbjct: 126997 M 126999
Score = 60.8 bits (146), Expect = 2e-07
Identities = 30/63 (47%), Positives = 41/63 (64%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
R R Y++ Q ELE+E+ N ++T+ +R +S L+ERQV IWFQNRR+K KK N
Sbjct: 148704 RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN 148883
Query: 381 KLK 383
K K
Sbjct: 148884 KDK 148892
Score = 59.7 bits (143), Expect = 4e-07
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Frame = +2
Query: 270 PMESYQPWALPNGWNGQMYCPKEQTQPPH---LWKSTLPDVVSHPSDASSYRRGRKKRVP 326
P E+ W GW GQ + + Q L +P + A RRGR+
Sbjct: 167141 PKEAVSCWP---GWEGQDFARRNSLQRTLC*LLLVCFVPGSLGVGYGADR-RRGRQI--- 167299
Query: 327 YTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
Y++ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+K KK N T S
Sbjct: 167300 YSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLS 167479
>gb|AF071242.1|AF071242 Danio rerio homeobox protein (hoxa13b) gene, complete cds
Length = 1953
Score = 131 bits (329), Expect = 1e-28
Identities = 65/75 (86%), Positives = 69/75 (91%)
Frame = +2
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
+D +S RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNL+ERQVTIWFQNR
Sbjct: 1337 TDGASVRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAHTNLTERQVTIWFQNR 1516
Query: 372 RVKEKKVINKLKTTS 386
RVKEKKV+NK K S
Sbjct: 1517 RVKEKKVVNKYKGIS 1561
Score = 127 bits (318), Expect = 2e-27
Identities = 69/142 (48%), Positives = 82/142 (57%)
Frame = +2
Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
LPYGYFG YYPC RM + EEF SRAKEFAF
Sbjct: 575 LPYGYFGGSYYPC-RMPK-----------SCTQPTTYGEKYMDTSVSGEEFPSRAKEFAF 718
Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
Y QGY++ QPVP YLD+PVVP L P E RHE L LP+E+YQPWA+ NGW+ +Y
Sbjct: 719 Y-QGYSSALT---QPVPSYLDVPVVPALSAPSEPRHESL-LPVETYQPWAITNGWSSPVY 883
Query: 289 CPKEQTQPPHLWKSTLPDVVSH 310
CPK+QTQ LWKS++ + H
Sbjct: 884 CPKDQTQSSTLWKSSIQGKMLH 949
Score = 47.4 bits (111), Expect = 0.002
Identities = 24/36 (66%), Positives = 29/36 (79%)
Frame = +2
Query: 1 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME 36
MTAS+LLH RWI+P VMFLYDNG D+++KNME
Sbjct: 308 MTASLLLHSRWIDP-VMFLYDNG----LDDMSKNME 400
>gb|AF224263.1|AF224263 Heterodontus francisci Evx2 (evx2), HoxD13 (HoxD13), HoxD12 (HoxD12),
HoxD11 (HoxD11), HoxD10 (HoxD10), HoxD9 (HoxD9), HoxD8
(HoxD8), and HoxD5 (HoxD5) genes, complete cds
Length = 98786
Score = 130 bits (326), Expect = 3e-28
Identities = 62/78 (79%), Positives = 71/78 (90%)
Frame = +1
Query: 306 DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
DV+ + +D + YRRGRKKRVPYTK QLKELEREYATNKFITK+KRRRIS TNL+ERQVT
Sbjct: 43357 DVMHNQTDINIYRRGRKKRVPYTKTQLKELEREYATNKFITKEKRRRISTATNLTERQVT 43536
Query: 366 IWFQNRRVKEKKVINKLK 383
IWFQNRRVKEKKV++K+K
Sbjct: 43537 IWFQNRRVKEKKVVSKVK 43590
Score = 115 bits (289), Expect = 5e-24
Identities = 65/145 (44%), Positives = 76/145 (51%), Gaps = 5/145 (3%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCARMGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFSSRA 223
+ YGY FGS YY C +G +E S+RA
Sbjct: 42604 ISYGYHFGSSYYSCRNVGIQQTGLKSGAHASLAGYPVDKYMDVSSLTNTPVPTDEVSARA 42783
Query: 224 KEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGW 283
KEFAFY Q Y PY Q V GYLD+PVVP + G GE RHE L + ME YQPW N W
Sbjct: 42784 KEFAFY-QSYP-NPY---QRVSGYLDVPVVPTISGHGEPRHEAL-ISMEGYQPWTFANSW 42945
Query: 284 NGQMYCPKEQTQPPHLWKSTLPDVV 308
NGQ+YCPK+QTQ PH WKS L ++
Sbjct: 42946 NGQVYCPKDQTQTPHFWKSPLSGIM 43020
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/60 (61%), Positives = 48/60 (79%)
Frame = +1
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 58579 RCRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 58758
Score = 79.0 bits (193), Expect = 7e-13
Identities = 35/68 (51%), Positives = 51/68 (74%)
Frame = +3
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R R+KR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K++
Sbjct: 50463 RSRRKRKPYTKQQIAELENEFLANEFINRQKRKELSDRLNLSDQQVKIWFQNRRMKKKRL 50642
Query: 379 INKLKTTS 386
+ + +T S
Sbjct: 50643 VMREQTLS 50666
Score = 77.8 bits (190), Expect = 2e-12
Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Frame = +2
Query: 304 LPDVVSHPSDASSYRRG-RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER 362
LP HP+ + R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ER
Sbjct: 75428 LPFFPDHPAINWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTER 75607
Query: 363 QVTIWFQNRRVKEKKVINKLK 383
QV IWFQNRR+K KK +NK+K
Sbjct: 75608 QVKIWFQNRRMKMKK-MNKVK 75667
Score = 76.3 bits (186), Expect = 5e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 69357 KSGRKKRCPYTKYQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 69536
Query: 378 V 378
+
Sbjct: 69537 M 69539
Score = 63.2 bits (152), Expect = 4e-08
Identities = 31/65 (47%), Positives = 46/65 (70%)
Frame = +2
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
G++ R YT+ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+K KK
Sbjct: 93446 GKRTRTAYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK-D 93622
Query: 380 NKLKT 384
NKLK+
Sbjct: 93623 NKLKS 93637
Score = 62.0 bits (149), Expect = 9e-08
Identities = 33/70 (47%), Positives = 45/70 (64%)
Frame = +1
Query: 314 ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRV 373
A RRGR+ Y++ Q ELE+E+ N ++T+ +R +S L+ERQV IWFQNRR+
Sbjct: 82642 APGRRRGRQT---YSRFQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRM 82812
Query: 374 KEKKVINKLK 383
K KK NK K
Sbjct: 82813 KWKKENNKDK 82842
Score = 52.4 bits (124), Expect = 7e-05
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +2
Query: 315 SSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQV 364
+S R RKKRVPY+K Q+ ELE Y N+F+T + R IS L+ERQV
Sbjct: 34055 NSIHRQRKKRVPYSKQQIAELEMAYENNRFLTPEVRLNISFKLGLTERQV 34204
>gb|AF071241.1|AF071241 Danio rerio homeobox protein (hoxa13a) gene, partial cds
Length = 204
Score = 128 bits (322), Expect = 8e-28
Identities = 63/67 (94%), Positives = 66/67 (98%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNLSERQVTIWFQNRRVKEKKV+
Sbjct: 1 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAQTNLSERQVTIWFQNRRVKEKKVV 180
Query: 380 NKLKTTS 386
NKLK++S
Sbjct: 181 NKLKSSS 201
>gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence
Length = 214875
Score = 128 bits (321), Expect = 1e-27
Identities = 63/82 (76%), Positives = 69/82 (83%)
Frame = +1
Query: 304 LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
L DV + D YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQ
Sbjct: 106753 LGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQ 106932
Query: 364 VTIWFQNRRVKEKKVINKLKTT 385
VTIWFQNRRVK+KK+++KLK T
Sbjct: 106933 VTIWFQNRRVKDKKIVSKLKDT 106998
Score = 98.6 bits (244), Expect = 8e-19
Identities = 71/187 (37%), Positives = 85/187 (44%), Gaps = 10/187 (5%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N E
Sbjct: 105541 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPTNEVP 105720
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE +FY QGY + PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 105721 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 105873
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKV--QLKELERE 338
NGWN Q+YC K+Q Q H WKS S P ++ R GRKK+ PY V + L R
Sbjct: 105874 NGWNSQVYCAKDQPQGSHFWKS------SFPGRSNEKRGGRKKKSPYLGVVTYIPGLTRY 106035
Query: 339 YATNKFI 345
KF+
Sbjct: 106036 NPLEKFV 106056
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/61 (60%), Positives = 49/61 (79%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK
Sbjct: 120782 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 120961
Query: 378 V 378
+
Sbjct: 120962 L 120964
Score = 79.7 bits (195), Expect = 4e-13
Identities = 35/63 (55%), Positives = 48/63 (75%)
Frame = +1
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K+V
Sbjct: 112711 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 112890
Query: 379 INK 381
+ +
Sbjct: 112891 VQR 112899
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 131006 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 131185
Query: 378 V 378
+
Sbjct: 131186 M 131188
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 136080 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 136259
Query: 378 V 378
+
Sbjct: 136260 M 136262
Score = 63.9 bits (154), Expect = 2e-08
Identities = 35/72 (48%), Positives = 47/72 (64%)
Frame = +2
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S A RRGR+ Y++ Q ELE+E+ N ++T+ +R +S T L+ERQV IWFQNR
Sbjct: 143381 SAAPGRRRGRQT---YSRFQTLELEKEFLFNPYLTRKRRIEVSHTLALTERQVKIWFQNR 143551
Query: 372 RVKEKKVINKLK 383
R+K KK NK K
Sbjct: 143552 RMKWKKENNKDK 143587
Score = 62.4 bits (150), Expect = 7e-08
Identities = 28/57 (49%), Positives = 42/57 (73%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q+ ELE+E+ N+++T+ +R I+ T LSERQ+ IWFQNRR+K KK
Sbjct: 165163 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 165333
Score = 60.1 bits (144), Expect = 3e-07
Identities = 26/57 (45%), Positives = 40/57 (69%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT QL ELE+E+ N+++ + +R ++ NL+ERQ+ IWFQNRR+K KK
Sbjct: 183235 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 183405
Score = 55.5 bits (132), Expect = 8e-06
Identities = 25/54 (46%), Positives = 38/54 (70%)
Frame = +2
Query: 324 RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R ++ QL ELE+E+ NK++T+ +R I+ L++ QV IWFQNRR+K+KK
Sbjct: 200975 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNRRMKQKK 201136
>gb|L35012.1|MUSHOXAE Mus musculus (clone cos2W3H) Hox gene fragment
Length = 236
Score = 127 bits (319), Expect = 2e-27
Identities = 62/69 (89%), Positives = 67/69 (96%)
Frame = +3
Query: 315 SSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 374
SSYRRGRKKRVPYTKVQLKELE+EYA +KFITK+KRRRISATTNLSERQVTIWFQNRRVK
Sbjct: 6 SSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVK 185
Query: 375 EKKVINKLK 383
EKKV++K K
Sbjct: 186 EKKVVSKSK 212
>gb|AF005220.1|HUMTFHOXD2 Homo sapiens transcription factor HOXD13 (Hoxd13) gene, exon 2 and
complete cds
Length = 335
Score = 127 bits (319), Expect = 2e-27
Identities = 62/80 (77%), Positives = 68/80 (84%)
Frame = +2
Query: 306 DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
DV + D YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQVT
Sbjct: 59 DVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVT 238
Query: 366 IWFQNRRVKEKKVINKLKTT 385
IWFQNRRVK+KK+++KLK T
Sbjct: 239 IWFQNRRVKDKKIVSKLKDT 298
>dbj|AB038155.1|AB038155 Homo sapiens mRNA for NUP98-HOXD13 fusion protein, complete cds
Length = 1914
Score = 127 bits (319), Expect = 2e-27
Identities = 62/80 (77%), Positives = 68/80 (84%)
Frame = +3
Query: 306 DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
DV + D YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQVT
Sbjct: 1638 DVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVT 1817
Query: 366 IWFQNRRVKEKKVINKLKTT 385
IWFQNRRVK+KK+++KLK T
Sbjct: 1818 IWFQNRRVKDKKIVSKLKDT 1877
>gb|AC009336.13|AC009336 Homo sapiens chromosome 2, clone RP11-387A1, complete sequence
Length = 175667
Score = 127 bits (319), Expect = 2e-27
Identities = 62/80 (77%), Positives = 68/80 (84%)
Frame = +3
Query: 306 DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
DV + D YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQVT
Sbjct: 78471 DVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVT 78650
Query: 366 IWFQNRRVKEKKVINKLKTT 385
IWFQNRRVK+KK+++KLK T
Sbjct: 78651 IWFQNRRVKDKKIVSKLKDT 78710
Score = 91.3 bits (225), Expect = 1e-16
Identities = 59/145 (40%), Positives = 69/145 (46%), Gaps = 8/145 (5%)
Frame = +2
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N A E
Sbjct: 77252 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 77431
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE +FY QGY + PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 77432 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 77584
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP 305
NGWN Q+YC K+Q Q H WKS+ P
Sbjct: 77585 NGWNSQVYCTKDQPQGSHFWKSSFP 77659
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/61 (60%), Positives = 49/61 (79%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK
Sbjct: 92904 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 93083
Query: 378 V 378
+
Sbjct: 93084 L 93086
Score = 79.0 bits (193), Expect = 7e-13
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +3
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K+V
Sbjct: 84537 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 84716
Query: 379 I 379
+
Sbjct: 84717 V 84719
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 102987 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 103166
Query: 378 V 378
+
Sbjct: 103167 M 103169
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 107952 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 108131
Query: 378 V 378
+
Sbjct: 108132 M 108134
Score = 62.4 bits (150), Expect = 7e-08
Identities = 28/57 (49%), Positives = 42/57 (73%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q+ ELE+E+ N+++T+ +R I+ T LSERQ+ IWFQNRR+K KK
Sbjct: 136626 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 136796
Score = 62.0 bits (149), Expect = 9e-08
Identities = 34/72 (47%), Positives = 46/72 (63%)
Frame = +3
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S A RRGR+ Y++ Q ELE+E+ N ++T+ +R +S L+ERQV IWFQNR
Sbjct: 115302 SAAPGRRRGRQT---YSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNR 115472
Query: 372 RVKEKKVINKLK 383
R+K KK NK K
Sbjct: 115473 RMKWKKENNKDK 115508
Score = 60.8 bits (146), Expect = 2e-07
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +3
Query: 290 PKEQTQPPHLWKSTLPDVVSHPSDASSYRR-----GRKKRVPYTKVQLKELEREYATNKF 344
P + PH P + P ++ + ++ R YT QL ELE+E+ N++
Sbjct: 155439 PLSSPEGPHPLAQRPPSLPPCPGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRY 155618
Query: 345 ITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ + +R ++ NL+ERQ+ IWFQNRR+K KK
Sbjct: 155619 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 155717
Score = 57.8 bits (138), Expect = 2e-06
Identities = 30/90 (33%), Positives = 50/90 (55%)
Frame = +3
Query: 288 YCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITK 347
+CP+ P W + V ++ + R ++ QL ELE+E+ NK++T+
Sbjct: 173748 FCPR-----PQAWLTPCLYVAGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTR 173912
Query: 348 DKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+R I+ +L++ QV IWFQNRR+K+KK
Sbjct: 173913 ARRIEIANCLHLNDTQVKIWFQNRRMKQKK 174002
>dbj|AB032481.1|AB032481 Homo sapiens HOXD13 gene for homeobox transcription factor, complete
cds
Length = 10739
Score = 127 bits (319), Expect = 2e-27
Identities = 62/80 (77%), Positives = 68/80 (84%)
Frame = +2
Query: 306 DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
DV + D YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQVT
Sbjct: 10463 DVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVT 10642
Query: 366 IWFQNRRVKEKKVINKLKTT 385
IWFQNRRVK+KK+++KLK T
Sbjct: 10643 IWFQNRRVKDKKIVSKLKDT 10702
Score = 91.3 bits (225), Expect = 1e-16
Identities = 59/145 (40%), Positives = 69/145 (46%), Gaps = 8/145 (5%)
Frame = +3
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N A E
Sbjct: 9240 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 9419
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE +FY QGY + PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 9420 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 9572
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP 305
NGWN Q+YC K+Q Q H WKS+ P
Sbjct: 9573 NGWNSQVYCTKDQPQGSHFWKSSFP 9647
>gb|AC091179.5| Homo sapiens chromosome 17, clone CTD-2377D24, complete sequence
Length = 85424
Score = 125 bits (315), Expect = 5e-27
Identities = 58/77 (75%), Positives = 70/77 (90%)
Frame = +1
Query: 310 HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQ 369
HP DA ++RRGRKKR+PY+K QL+ELEREYA NKFITKDKRR+ISA T+LSERQ+TIWFQ
Sbjct: 27676 HPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQ 27855
Query: 370 NRRVKEKKVINKLKTTS 386
NRRVKEKKV+ K+K ++
Sbjct: 27856 NRRVKEKKVLAKVKNSA 27906
Score = 101 bits (251), Expect = 1e-19
Identities = 63/150 (42%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Frame = +3
Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
+PYGYFG GYY C A EE+ SR EFAF
Sbjct: 26343 VPYGYFGGGYYSCR--------VSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAF 26498
Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
Y GY G Y QP+ YLD+ VV LG PGE RH+ L LP++SYQ WAL GWN QM
Sbjct: 26499 Y-PGYP-GTY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSYQSWALAGGWNSQMC 26660
Query: 289 CPKEQTQPPHLWKS-------TLPDVVSHP 311
C EQ P WK+ TL +VS P
Sbjct: 26661 CQGEQNPPGPFWKAAFAGTSITLGPLVSEP 26750
>dbj|D10290.1|CHKCHOX4G Gallus gallus Chox-4g gene for homeodomain protein, partial cds
Length = 581
Score = 125 bits (314), Expect = 6e-27
Identities = 61/81 (75%), Positives = 69/81 (84%)
Frame = +1
Query: 303 TLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER 362
+L DV + + YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRRRISA TNLSER
Sbjct: 46 SLGDVALNQPEMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSER 225
Query: 363 QVTIWFQNRRVKEKKVINKLK 383
QVTIWFQNRRVK+KK+++KLK
Sbjct: 226 QVTIWFQNRRVKDKKIVSKLK 288
>gb|S80553.1|S80553 HOX-4 complex: Hox-4.8=homeobox gene [mice, Genomic, 288 nt]
Length = 288
Score = 124 bits (310), Expect = 2e-26
Identities = 61/82 (74%), Positives = 67/82 (81%)
Frame = +1
Query: 304 LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
L DV + D YRRGRKKRVPYTK+QLKELE EYA NKFI KDKRR IS TNLSERQ
Sbjct: 19 LGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRTISRATNLSERQ 198
Query: 364 VTIWFQNRRVKEKKVINKLKTT 385
VTIWFQNRRVK+KK+++KLK T
Sbjct: 199 VTIWFQNRRVKDKKIVSKLKDT 264
>emb|AJ335159.1|HSA335159 Homo sapiens genomic sequence surrounding NotI site, clone NL1-GK2C
Length = 677
Score = 120 bits (301), Expect = 2e-25
Identities = 71/217 (32%), Positives = 81/217 (36%), Gaps = 2/217 (0%)
Frame = +1
Query: 85 NQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 144
NQCRNLMAH
Sbjct: 13 NQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGP 192
Query: 145 XXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYPCARMGPHPNXXXXXXXX--XXXXX 202
LPYGYFGSGYYPCARMGPHPN
Sbjct: 193 AGAEAVKQCIPCSAAAQSSSGPAALPYGYFGSGYYPCARMGPHPNAIKLCAQPD*AAVGA 372
Query: 203 XXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGES 262
P EE SSRAKE AF HQGYA GPYHHH+ +P YL+MP+VPG GP
Sbjct: 373 VFWDKYMDTARPTCEELSSRAKESAF*HQGYADGPYHHHKHMPRYLEMPMVPGPRGPR*V 552
Query: 263 RHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHL 299
LG P + +G +G MY ++ P+L
Sbjct: 553 VPRTLGSYHGKVPPLGVVHGLDGHMYLAQKHA*LPYL 663
>gb|AF071261.1|AF071261 Danio rerio homeobox protein (hoxc13a) gene, partial cds
Length = 216
Score = 119 bits (298), Expect = 5e-25
Identities = 57/67 (85%), Positives = 63/67 (93%)
Frame = +2
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
GRKKRVPYTK+QLKELE+EYA +KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK +
Sbjct: 2 GRKKRVPYTKIQLKELEKEYAASKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKFV 181
Query: 380 NKLKTTS 386
+K KT +
Sbjct: 182 SKSKTNN 202
>emb|Y07699.1|DRHOXA13 D.rerio HOXA-13 gene, partial
Length = 180
Score = 117 bits (292), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNL+ERQVTIWFQNRRVKEKKV+
Sbjct: 1 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAHTNLTERQVTIWFQNRRVKEKKVV 180
>gb|AF071262.1|AF071262 Danio rerio homeobox protein (hoxc13b) gene, partial cds
Length = 222
Score = 112 bits (279), Expect = 7e-23
Identities = 54/67 (80%), Positives = 61/67 (90%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
GRKKRVPYTK+QLKELE+EYA +KFITKD+RRRISATT+LSERQVTIWFQNRRVKEKK +
Sbjct: 1 GRKKRVPYTKIQLKELEKEYAASKFITKDRRRRISATTSLSERQVTIWFQNRRVKEKKFV 180
Query: 380 NKLKTTS 386
K +S
Sbjct: 181 CKSSKSS 201
>emb|AJ335615.1|HSA335615 Homo sapiens genomic sequence surrounding NotI site, clone
NR5-FH20R
Length = 723
Score = 106 bits (265), Expect = 3e-21
Identities = 68/216 (31%), Positives = 71/216 (32%), Gaps = 2/216 (0%)
Frame = +1
Query: 85 NQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 144
NQCRNLMAH
Sbjct: 13 NQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGP 192
Query: 145 XXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYPCARMGPHPNXXXXXXXXX--XXXX 202
LPYGYFGSGYYPCARMGPHPN
Sbjct: 193 EGAKAAKQ*HPCSPAAHNWSGPAELPYGYFGSGYYPCARMGPHPNAIKWCAQAA*VVDVA 372
Query: 203 XXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGES 262
GPAAEE S E AF Q YAAGPY G P G P
Sbjct: 373 AFEDKYMDTAGPAAEEIISPP*EIAF*QQRYAAGPYTIIIRCLGTRICQWCPAYGAPASH 552
Query: 263 RHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
P GL +ESYQPW L WN Q P+E+ PH
Sbjct: 553 GTNPWGLSIESYQPWVLAKSWNNQNSPPQEEGAAPH 660
>gb|BC016712.1|BC016712 Homo sapiens, clone IMAGE:4108342, mRNA
Length = 1506
Score = 103 bits (256), Expect = 3e-20
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +3
Query: 336 EREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
EREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 3 EREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 155
>emb|AJ324355.1|HSA324355 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DO2R
Length = 863
Score = 95.5 bits (236), Expect = 7e-18
Identities = 65/164 (39%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N A E
Sbjct: 34 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 213
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE +FY QGY + PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 214 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 366
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKR 324
NGWN Q+YC K+Q Q H WKS+ P + RRGR+KR
Sbjct: 367 NGWNSQVYCTKDQPQGSHFWKSSFPG-XGRWRKGTDTRRGREKR 495
>gb|AF005219.1|HUMTFHOXD1 Homo sapiens transcription factor HOXD13 (Hoxd13) gene, exon 1
Length = 1030
Score = 91.3 bits (225), Expect = 1e-16
Identities = 59/145 (40%), Positives = 69/145 (46%), Gaps = 8/145 (5%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N A E
Sbjct: 460 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 639
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE +FY QGY + PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 640 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 792
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP 305
NGWN Q+YC K+Q Q H WKS+ P
Sbjct: 793 NGWNSQVYCTKDQPQGSHFWKSSFP 867
>emb|AJ335415.1|HSA335415 Homo sapiens genomic sequence surrounding NotI site, clone
NL3-CI19R
Length = 746
Score = 91.3 bits (225), Expect = 1e-16
Identities = 59/145 (40%), Positives = 69/145 (46%), Gaps = 8/145 (5%)
Frame = +1
Query: 169 LPYGY-FGSGYYPCAR---MGPHPNXXXXXXXXXXXXX----XXXXXXXXXXGPAAEEFS 220
L YGY FG+GYY C +G N A E
Sbjct: 34 LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVP 213
Query: 221 SRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP 280
+RAKE +FY QGY + PY H VPGY+DM G GE RHE + ME YQ W L
Sbjct: 214 ARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-ISMEGYQSWTLA 366
Query: 281 NGWNGQMYCPKEQTQPPHLWKSTLP 305
NGWN Q+YC K+Q Q H WKS+ P
Sbjct: 367 NGWNSQVYCTKDQPQGSHFWKSSFP 441
>ref|NM_014212.1| Homo sapiens homeo box C11 (HOXC11), mRNA
Length = 2018
Score = 86.3 bits (212), Expect = 4e-15
Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Frame = +3
Query: 249 DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVV 308
D P P G GE++ EP P A + +E T P + V
Sbjct: 534 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 698
Query: 309 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
P+ A + R RKKR PY+K Q++ELERE+ N +I K+KR ++S NL++RQV I
Sbjct: 699 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI 878
Query: 367 WFQNRRVKEKKV 378
WFQNRR+KEKK+
Sbjct: 879 WFQNRRMKEKKL 914
>emb|AJ000041.1|HSHOXC11P Homo sapiens mRNA for HOXC11
Length = 2018
Score = 86.3 bits (212), Expect = 4e-15
Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Frame = +3
Query: 249 DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVV 308
D P P G GE++ EP P A + +E T P + V
Sbjct: 534 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 698
Query: 309 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
P+ A + R RKKR PY+K Q++ELERE+ N +I K+KR ++S NL++RQV I
Sbjct: 699 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI 878
Query: 367 WFQNRRVKEKKV 378
WFQNRR+KEKK+
Sbjct: 879 WFQNRRMKEKKL 914
>gb|BC001543.1|BC001543 Homo sapiens, homeo box C11, clone MGC:4906 IMAGE:3462682, mRNA,
complete cds
Length = 2082
Score = 86.3 bits (212), Expect = 4e-15
Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Frame = +2
Query: 249 DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVV 308
D P P G GE++ EP P A + +E T P + V
Sbjct: 587 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 751
Query: 309 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
P+ A + R RKKR PY+K Q++ELERE+ N +I K+KR ++S NL++RQV I
Sbjct: 752 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI 931
Query: 367 WFQNRRVKEKKV 378
WFQNRR+KEKK+
Sbjct: 932 WFQNRRMKEKKL 967
>ref|XM_012215.3| Homo sapiens homeo box C11 (HOXC11), mRNA
Length = 1963
Score = 86.3 bits (212), Expect = 4e-15
Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Frame = +3
Query: 249 DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVV 308
D P P G GE++ EP P A + +E T P + V
Sbjct: 534 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 698
Query: 309 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
P+ A + R RKKR PY+K Q++ELERE+ N +I K+KR ++S NL++RQV I
Sbjct: 699 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI 878
Query: 367 WFQNRRVKEKKV 378
WFQNRR+KEKK+
Sbjct: 879 WFQNRRMKEKKL 914
>gb|M81249.1|CHKHOXA Gallus gallus homeodomain-containing protein (GHox4.6) mRNA,
complete cds
Length = 1006
Score = 85.5 bits (210), Expect = 7e-15
Identities = 59/166 (35%), Positives = 83/166 (49%), Gaps = 1/166 (0%)
Frame = +1
Query: 214 PAAEEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMES 273
PAA F QG+ ++ P P Y G GE + P S
Sbjct: 427 PAASNFYGSVGRNGILPQGF--DQFYEPAPAPPYQQHSEGEGDADKGELK------PQHS 582
Query: 274 YQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSY-RRGRKKRVPYTKVQL 332
A P+G ++ PP + V+ S++S+ +R RKKR PYTK Q+
Sbjct: 583 ACSKA-PSGQEKKVTTASGAASPPG-------EAVAEKSNSSAVPQRSRKKRCPYTKYQI 738
Query: 333 KELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
+ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 739 RELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 876
>gb|AF151672.1|AF151672 Nereis virens Post1 homeobox protein (Post1) gene, partial cds
Length = 379
Score = 84.0 bits (206), Expect = 2e-14
Identities = 40/61 (65%), Positives = 47/61 (76%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
RKKR PY+K Q+ ELE+EY N +ITK KR +S NLSERQV IWFQNRR+KEKKV +
Sbjct: 184 RKKRKPYSKYQIAELEKEYVNNTYITKPKRWELSQRLNLSERQVKIWFQNRRMKEKKVTD 363
Query: 381 K 381
K
Sbjct: 364 K 366
>emb|X99679.1|HSHOXC13 H.sapiens mRNA for HOXC13 protein
Length = 134
Score = 83.6 bits (205), Expect = 3e-14
Identities = 40/44 (90%), Positives = 43/44 (96%)
Frame = +1
Query: 332 LKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKE 375
LKELE+EYA +KFITK+KRRRISATTNLSERQVTIWFQNRRVKE
Sbjct: 1 LKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKE 132
>gb|M81250.1|CHKHOXB Gallus gallus homeodomain-containing protein (GHox1i) mRNA,
complete cds
Length = 2212
Score = 83.2 bits (204), Expect = 4e-14
Identities = 39/67 (58%), Positives = 53/67 (78%)
Frame = +1
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S +SS +R RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNR
Sbjct: 682 SGSSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 861
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 862 RMKEKKI 882
>ref|NM_021192.1| Homo sapiens homeo box D11 (HOXD11), mRNA
Length = 1017
Score = 83.2 bits (204), Expect = 4e-14
Identities = 39/67 (58%), Positives = 52/67 (77%)
Frame = +1
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S A + +R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNR
Sbjct: 772 SSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNR 951
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 952 RMKEKKL 972
>emb|AJ319668.1|XLA319668 Xenopus laevis partial mRNA for homeobox protein Hox A11 (hox A11
gene)
Length = 647
Score = 82.8 bits (203), Expect = 5e-14
Identities = 38/67 (56%), Positives = 54/67 (79%)
Frame = +1
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
+++SS +R RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNR
Sbjct: 313 ANSSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 492
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 493 RMKEKKI 513
>gb|AF031481.1|AF031481 Ambystoma mexicanum homeobox transcription factor (Hoxd-11) mRNA,
complete cds
Length = 2124
Score = 82.8 bits (203), Expect = 5e-14
Identities = 41/78 (52%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Frame = +1
Query: 302 STLPDVVSHPSDASSY-RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 360
S+ +V + S++S+ +R RKKR PYTK Q++ELERE+ N +I K+KR ++S NLS
Sbjct: 610 SSSGEVTADKSNSSATPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLS 789
Query: 361 ERQVTIWFQNRRVKEKKV 378
+RQV IWFQNRR++EKK+
Sbjct: 790 DRQVKIWFQNRRMREKKL 843
>ref|NM_008273.1| Mus musculus homeo box D11 (Hoxd11), mRNA
Length = 1011
Score = 82.4 bits (202), Expect = 6e-14
Identities = 56/149 (37%), Positives = 72/149 (47%), Gaps = 5/149 (3%)
Frame = +1
Query: 235 AGPYHHHQPVP----GYLDM-PVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYC 289
AGP P P G D PG GG G S P +P G G+
Sbjct: 565 AGPQPQPAPAPPQPEGAADKGDPKPGAGGGGGS---PCAKATPGPEPKGAAEGGGGEGEG 735
Query: 290 PKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDK 349
P + + P +R RKKR PYTK Q++ELERE+ N +I K+K
Sbjct: 736 PPGEAGAEKSGGTVAP------------QRSRKKRCPYTKYQIRELEREFFFNVYINKEK 879
Query: 350 RRRISATTNLSERQVTIWFQNRRVKEKKV 378
R ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 880 RLQLSRMLNLTDRQVKIWFQNRRMKEKKL 966
>emb|X57674.1|NVNVHBOX2 N.viridescens RNA for homeobox gene NvHbox 2
Length = 1079
Score = 82.4 bits (202), Expect = 6e-14
Identities = 40/74 (54%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
Frame = +1
Query: 306 DVVSHPSDASSY-RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQV 364
+V + S++S+ +R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV
Sbjct: 583 EVAADKSNSSATPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQV 762
Query: 365 TIWFQNRRVKEKKV 378
IWFQNRR+KEKK+
Sbjct: 763 KIWFQNRRMKEKKL 804
>ref|NM_005523.3| Homo sapiens homeo box A11 (HOXA11), mRNA
Length = 942
Score = 82.4 bits (202), Expect = 6e-14
Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 4/92 (4%)
Frame = +1
Query: 291 KEQTQPPHLWKSTLPDVVS-HPSD---ASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 346
KE+ + P S+ P+ S H D SS +R RKKR PYTK Q++ELERE+ + +I
Sbjct: 628 KERRRRPE--SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYIN 801
Query: 347 KDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 802 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 897
>dbj|D10288.1|CHKCHOX4E Gallus gallus Chox-4e gene for homeodomain protein, partial cds
Length = 511
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/61 (60%), Positives = 49/61 (79%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK
Sbjct: 73 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 252
Query: 378 V 378
+
Sbjct: 253 L 255
>emb|X60395.1|MMHOX46 M.musculus Hox-4.6 gene
Length = 2205
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/61 (60%), Positives = 49/61 (79%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK
Sbjct: 1853 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 2032
Query: 378 V 378
+
Sbjct: 2033 L 2035
>emb|X71422.1|MMHOXD11 M.musculus Hoxd-11 gene
Length = 5593
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/61 (60%), Positives = 49/61 (79%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK
Sbjct: 3233 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 3412
Query: 378 V 378
+
Sbjct: 3413 L 3415
>emb|X60762.1|MMHOX46E2 M.musculus Hox-4.6 gene, exon 2
Length = 284
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/61 (60%), Positives = 49/61 (79%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK
Sbjct: 9 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 188
Query: 378 V 378
+
Sbjct: 189 L 191
>gb|AF154915.1|AF154915 Homo sapiens transcription factor HOXD12 (HOXD12) and transcription
factor HOXD11 (HOXD11) genes, complete cds
Length = 10469
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/61 (60%), Positives = 49/61 (79%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+R RKKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK
Sbjct: 9746 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 9925
Query: 378 V 378
+
Sbjct: 9926 L 9928
Score = 77.0 bits (188), Expect = 3e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K+V+
Sbjct: 1393 RKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVV 1569
>gb|U20370.1|MMU20370 Mus musculus homeobox protein (Hoxa11) mRNA, complete cds
Length = 2243
Score = 80.9 bits (198), Expect = 2e-13
Identities = 45/92 (48%), Positives = 62/92 (66%), Gaps = 4/92 (4%)
Frame = +3
Query: 291 KEQTQPPHLWKSTLPDVVS-HPSD---ASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 346
KE+ + P S+ P+ S H D S +R RKKR PYTK Q++ELERE+ + +I
Sbjct: 675 KERRRRPE--SSSSPESSSGHTEDKAGGSGGQRTRKKRCPYTKYQIRELEREFFFSVYIN 848
Query: 347 KDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 849 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 944
>ref|NM_010450.1| Mus musculus homeo box A11 (Hoxa11), mRNA
Length = 2246
Score = 80.9 bits (198), Expect = 2e-13
Identities = 45/92 (48%), Positives = 62/92 (66%), Gaps = 4/92 (4%)
Frame = +1
Query: 291 KEQTQPPHLWKSTLPDVVS-HPSD---ASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 346
KE+ + P S+ P+ S H D S +R RKKR PYTK Q++ELERE+ + +I
Sbjct: 676 KERRRRPE--SSSSPESSSGHTEDKAGGSGGQRTRKKRCPYTKYQIRELEREFFFSVYIN 849
Query: 347 KDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 850 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 945
>gb|AF071164.1|AF071164 Homo sapiens homeobox A11 (HOXA11) gene, complete cds
Length = 8624
Score = 80.5 bits (197), Expect = 2e-13
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = -3
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S ++ +R RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNR
Sbjct: 1269 SPSTGGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 1090
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 1089 RMKEKKI 1069
>gb|AF039307.1|AF039307 Homo sapiens homeobox A11 (HOXA11) gene, complete cds
Length = 4322
Score = 80.5 bits (197), Expect = 2e-13
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +1
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S ++ +R RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNR
Sbjct: 3907 SPSTGGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 4086
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 4087 RMKEKKI 4107
>gb|AF287137.1|AF287137 Danio rerio Hoxa-11b gene, complete cds
Length = 852
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/67 (55%), Positives = 53/67 (78%)
Frame = +1
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S +S+ ++ RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNR
Sbjct: 607 SGSSNGQKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 786
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 787 RMKEKKL 807
>gb|AF287136.1|AF287136 Danio aequipinnatus Hoxa-11b gene, complete cds
Length = 852
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/67 (55%), Positives = 53/67 (78%)
Frame = +1
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S +S+ ++ RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNR
Sbjct: 607 SGSSNGQKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 786
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 787 RMKEKKL 807
>emb|X58849.1|MMHOX47 Murine Hox-4.7 gene
Length = 1139
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +3
Query: 307 VVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
V P ++ R RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV I
Sbjct: 789 VAGLPWGGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKI 968
Query: 367 WFQNRRVKEKKVINK 381
WFQNRR+K+K+V+ +
Sbjct: 969 WFQNRRMKKKRVVQR 1013
>gb|AF144679.1|AF144679 Lingula anatina Post-1 homeodomain protein gene, partial cds
Length = 346
Score = 79.7 bits (195), Expect = 4e-13
Identities = 38/58 (65%), Positives = 45/58 (77%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
RKKR PY+K Q+ ELEREY +N +I+K KR +S LSERQV IWFQNRR+KEKKV
Sbjct: 29 RKKRKPYSKYQIAELEREYVSNTYISKPKRWELSQRLQLSERQVKIWFQNRRMKEKKV 202
>gb|AF287138.1|AF287138 Danio rerio Hoxa-11a gene, complete cds
Length = 855
Score = 79.7 bits (195), Expect = 4e-13
Identities = 38/67 (56%), Positives = 52/67 (76%)
Frame = +1
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S A+S R RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV +WFQNR
Sbjct: 610 SGANSGPRFRKKRCPYTKFQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKMWFQNR 789
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 790 RMKEKKL 810
>gb|AF042652.1|AF042652 Strongylocentrotus purpuratus homeodomain protein SpHbox7 (Hbox7)
mRNA, complete cds
Length = 3769
Score = 79.7 bits (195), Expect = 4e-13
Identities = 36/66 (54%), Positives = 52/66 (78%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
R KR PY+K+Q+ ELE+E+ TN ++T+D+R ++S +L+ERQV IWFQNRR+K KK+ +
Sbjct: 939 RTKRRPYSKLQIYELEKEFTTNMYLTRDRRSKLSQALDLTERQVKIWFQNRRMKMKKLND 1118
Query: 381 KLKTTS 386
K KT S
Sbjct: 1119 KEKTQS 1136
>ref|NM_008274.1| Mus musculus homeo box D12 (Hoxd12), mRNA
Length = 840
Score = 79.7 bits (195), Expect = 4e-13
Identities = 35/63 (55%), Positives = 48/63 (75%)
Frame = +1
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K+V
Sbjct: 628 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 807
Query: 379 INK 381
+ +
Sbjct: 808 VQR 816
>gb|U20371.1|MMU20371 Mus musculus homeobox protein (Hoxa11) gene, complete cds
Length = 9038
Score = 79.7 bits (195), Expect = 4e-13
Identities = 36/61 (59%), Positives = 49/61 (80%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+R RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNRR+KEKK
Sbjct: 6843 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 7022
Query: 378 V 378
+
Sbjct: 7023 I 7025
>gb|BC015565.1|BC015565 Homo sapiens, homeo box B9, clone MGC:12925 IMAGE:4139164, mRNA,
complete cds
Length = 2340
Score = 79.3 bits (194), Expect = 5e-13
Identities = 53/144 (36%), Positives = 72/144 (49%), Gaps = 8/144 (5%)
Frame = +3
Query: 243 PVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWA-----LPN---GWNGQMYCPKEQT 294
P G + P LG PGE + G P S + A L N G+ C +
Sbjct: 420 PGQGQAAVKAEPLLGAPGELLKQ--GTPEYSLETSAGREAVLSNQRPGYGDNKICEGSED 593
Query: 295 QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
+ PD + ++ R RKKR PYTK Q ELE+E+ N ++T+D+R ++
Sbjct: 594 KER-------PDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 752
Query: 355 ATTNLSERQVTIWFQNRRVKEKKV 378
NLSERQV IWFQNRR+K KK+
Sbjct: 753 RLLNLSERQVKIWFQNRRMKMKKM 824
>gb|L35011.1|MUSHOXAD Mus musculus (clone cos2W3E) Hox gene fragment
Length = 231
Score = 79.3 bits (194), Expect = 5e-13
Identities = 35/63 (55%), Positives = 50/63 (78%)
Frame = +3
Query: 317 YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 376
+ R RKKR PY+K+QL ELE E+ N+FIT+ +RR +S NLS++QV IWFQNRR+K+K
Sbjct: 12 HSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKK 191
Query: 377 KVI 379
+++
Sbjct: 192 RLL 200
>gb|AF328962.1|AF328963S2 Homo sapiens HOXC12 gene, exon 2 and complete cds
Length = 322
Score = 79.3 bits (194), Expect = 5e-13
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Frame = +1
Query: 296 PPHLWKSTLPDVVSHPSDASSY---RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRR 352
P LW + P + HP A Y R RKKR PY+K+QL ELE E+ N+FIT+ +RR
Sbjct: 1 PLILWPT--PAIHLHPG-APWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRE 171
Query: 353 ISATTNLSERQVTIWFQNRRVKEKKVI 379
+S NLS++QV IWFQNRR+K+K+++
Sbjct: 172 LSDRLNLSDQQVKIWFQNRRMKKKRLL 252
>ref|NM_024017.1| Homo sapiens homeo box B9 (HOXB9), mRNA
Length = 753
Score = 79.3 bits (194), Expect = 5e-13
Identities = 53/144 (36%), Positives = 72/144 (49%), Gaps = 8/144 (5%)
Frame = +1
Query: 243 PVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWA-----LPN---GWNGQMYCPKEQT 294
P G + P LG PGE + G P S + A L N G+ C +
Sbjct: 325 PGQGQAAVKAEPLLGAPGELLKQ--GTPEYSLETSAGREAVLSNQRPGYGDNKICEGSED 498
Query: 295 QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
+ PD + ++ R RKKR PYTK Q ELE+E+ N ++T+D+R ++
Sbjct: 499 KER-------PDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 657
Query: 355 ATTNLSERQVTIWFQNRRVKEKKV 378
NLSERQV IWFQNRR+K KK+
Sbjct: 658 RLLNLSERQVKIWFQNRRMKMKKM 729
>emb|X83451.1|CIHBOX5 C.intestinalis DNA for homeobox (435 bp)
Length = 435
Score = 79.3 bits (194), Expect = 5e-13
Identities = 36/58 (62%), Positives = 43/58 (74%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
RKKR PY+K Q+ LEREY N FIT+ KR I+ LS+RQV IWFQNRRVK+KK+
Sbjct: 4 RKKRQPYSKTQISSLEREYKANNFITRQKRENIARDLKLSDRQVKIWFQNRRVKDKKI 177
>emb|X62019.1|GGGHOX G.gallus Ghox 4.7 mRNA
Length = 1419
Score = 79.0 bits (193), Expect = 7e-13
Identities = 36/68 (52%), Positives = 50/68 (72%)
Frame = +1
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K+V
Sbjct: 664 RSRKKRKPYTKQQIAELENEFLLNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 843
Query: 379 INKLKTTS 386
+ + + S
Sbjct: 844 VMREQALS 867
>gb|L35010.1|MUSHOXAC Mus musculus (clone cos2W3A) Hox gene fragment
Length = 242
Score = 79.0 bits (193), Expect = 7e-13
Identities = 36/60 (60%), Positives = 48/60 (80%)
Frame = +3
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PY+K Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 18 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 197
>gb|AF276815.1|AF276815 Branchiostoma floridae homeodomain-containing protein Hox13 (Hox13)
gene, exon 2 and partial cds
Length = 270
Score = 79.0 bits (193), Expect = 7e-13
Identities = 36/70 (51%), Positives = 51/70 (72%)
Frame = +2
Query: 309 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
S +D S R GRKKR PYTK QL LE+EY N++++++ R +S NL++RQV IWF
Sbjct: 14 SPAADQSVARGGRKKRCPYTKYQLSVLEQEYIQNRYVSRETRLELSQRLNLTDRQVKIWF 193
Query: 369 QNRRVKEKKV 378
QNRR+K+K++
Sbjct: 194 QNRRMKQKRL 223
>ref|XM_087004.1| Homo sapiens similar to homeo box D12 (LOC150793), mRNA
Length = 730
Score = 79.0 bits (193), Expect = 7e-13
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +2
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K+V
Sbjct: 89 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 268
Query: 379 I 379
+
Sbjct: 269 V 271
>emb|X87751.1|DRHOXD11G D.rerio Hoxd-11 gene
Length = 792
Score = 79.0 bits (193), Expect = 7e-13
Identities = 36/67 (53%), Positives = 51/67 (75%)
Frame = +1
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
+ SS + RKKR PY+K Q++ELERE+ N +I K+KR ++S +L++RQV IWFQNR
Sbjct: 547 NSXSSATKSRKKRCPYSKYQIRELEREFFFNVYINKEKRLQLSRMLSLTDRQVKIWFQNR 726
Query: 372 RVKEKKV 378
R+KEKK+
Sbjct: 727 RMKEKKL 747
>ref|XM_010803.1| Homo sapiens homeo box D12 (HOXD12), mRNA
Length = 841
Score = 79.0 bits (193), Expect = 7e-13
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +2
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K+V
Sbjct: 629 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 808
Query: 379 I 379
+
Sbjct: 809 V 811
>dbj|D10289.1|CHKCHOX4F Gallus gallus Chox-4f gene for homeodomain protein, partial cds
Length = 790
Score = 79.0 bits (193), Expect = 7e-13
Identities = 36/68 (52%), Positives = 50/68 (72%)
Frame = +2
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K+V
Sbjct: 452 RSRKKRKPYTKQQIAELENEFLLNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 631
Query: 379 INKLKTTS 386
+ + + S
Sbjct: 632 VMREQALS 655
>gb|AF071260.1|AF071260 Danio rerio homeobox protein (hoxc12b) gene, complete cds
Length = 1600
Score = 78.6 bits (192), Expect = 9e-13
Identities = 35/70 (50%), Positives = 54/70 (77%)
Frame = +1
Query: 317 YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 376
+R+ RKKR PY+K+QL ELE E+ N+FIT+ +RR +S NL+++QV IWFQNRR+K+K
Sbjct: 1369 HRQTRKKRKPYSKLQLNELEGEFILNEFITRQRRRELSDRLNLTDQQVKIWFQNRRMKKK 1548
Query: 377 KVINKLKTTS 386
+++ + + S
Sbjct: 1549 RLLMREQALS 1578
>gb|M34857.1|MUSHOX25A Mouse Hox-2.5 mRNA
Length = 1413
Score = 78.6 bits (192), Expect = 9e-13
Identities = 36/63 (57%), Positives = 46/63 (72%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NLSERQV IWFQNRR+K KK
Sbjct: 178 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 357
Query: 378 VIN 380
+ N
Sbjct: 358 MNN 366
>ref|XM_028620.2| Homo sapiens homeo box C9 (HOXC9), mRNA
Length = 1535
Score = 78.6 bits (192), Expect = 9e-13
Identities = 53/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Frame = +3
Query: 258 GPGESRHEP---LGLPME--SYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPS 312
GPGE R P G P E P LP+ + K + + L D + +
Sbjct: 480 GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADL------DPSNPVA 641
Query: 313 DASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRR 372
+ R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR
Sbjct: 642 NWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRR 821
Query: 373 VKEKKVINKLKT 384
+K KK +NK KT
Sbjct: 822 MKMKK-MNKEKT 854
>dbj|AK056414.1|AK056414 Homo sapiens cDNA FLJ31852 fis, clone NT2RP7000812, highly similar
to HOMEOBOX PROTEIN HOX-B9
Length = 2516
Score = 78.6 bits (192), Expect = 9e-13
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = +1
Query: 305 PDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQV 364
PD + ++ R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NLSERQV
Sbjct: 535 PDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQV 714
Query: 365 TIWFQNRRVKEKKV 378
IWFQNRR+K KK+
Sbjct: 715 KIWFQNRRMKMKKM 756
>dbj|AK000445.1|AK000445 Homo sapiens cDNA FLJ20438 fis, clone KAT04696, highly similar to
HXC9_MOUSE HOMEOBOX PROTEIN HOX-C9
Length = 1561
Score = 78.6 bits (192), Expect = 9e-13
Identities = 53/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Frame = +1
Query: 258 GPGESRHEP---LGLPME--SYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPS 312
GPGE R P G P E P LP+ + K + + L D + +
Sbjct: 409 GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADL------DPSNPVA 570
Query: 313 DASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRR 372
+ R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR
Sbjct: 571 NWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRR 750
Query: 373 VKEKKVINKLKT 384
+K KK +NK KT
Sbjct: 751 MKMKK-MNKEKT 783
>dbj|AB026968.1|AB026968 Oryzias latipes gene for HOXD9B, partial cds
Length = 675
Score = 78.2 bits (191), Expect = 1e-12
Identities = 42/111 (37%), Positives = 64/111 (56%), Gaps = 2/111 (1%)
Frame = +1
Query: 271 MESYQPW-ALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRG-RKKRVPYT 328
+ + PW A P + ++Q Q + P +PS + + + RKKR PYT
Sbjct: 169 LNGFSPWTAEPKKEDEDRESQQQQQQQQQRQRQAPPPDPENPSASWIHAKSTRKKRCPYT 348
Query: 329 KVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
K Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK++
Sbjct: 349 KRQTLELEKEFLYNMYLTRDRRLEVAGLLNLTERQVKIWFQNRRMKMKKLM 501
>dbj|AK056123.1|AK056123 Homo sapiens cDNA FLJ31561 fis, clone NT2RI2001410
Length = 2477
Score = 78.2 bits (191), Expect = 1e-12
Identities = 52/144 (36%), Positives = 72/144 (49%), Gaps = 8/144 (5%)
Frame = +2
Query: 243 PVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWA-----LPN---GWNGQMYCPKEQT 294
P G + P LG PGE + G P S + A L N G+ C +
Sbjct: 308 PGQGQAAVKAEPLLGAPGELLKQ--GTPEYSLETSAGREAVLSNQRPGYGDNKICEGSED 481
Query: 295 QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
+ PD + ++ R RKKR PYTK Q ELE+E+ N ++T+D+R ++
Sbjct: 482 KER-------PDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 640
Query: 355 ATTNLSERQVTIWFQNRRVKEKKV 378
NLSERQV IWFQNRR+K +K+
Sbjct: 641 RLLNLSERQVKIWFQNRRMKMRKM 712
>gb|AF071258.1|AF071258 Danio rerio homeobox protein (hoxc11a) gene, partial cds
Length = 216
Score = 77.8 bits (190), Expect = 2e-12
Identities = 35/58 (60%), Positives = 47/58 (80%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
RKKR PY+K Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 4 RKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 177
>gb|AY014296.1|AY014295S2 Homo sapiens HOXB9 gene, exon 2 and complete cds
Length = 392
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NLSERQV IWFQNRR+K KK
Sbjct: 145 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 324
Query: 378 V 378
+
Sbjct: 325 M 327
>gb|S66855.1|S66855 HoxB9=Hox-2.5 [mice, embryos, mRNA Partial, 786 nt]
Length = 786
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NLSERQV IWFQNRR+K KK
Sbjct: 580 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 759
Query: 378 V 378
+
Sbjct: 760 M 762
>emb|X16172.1|HSHOX25 Human HOX-2.5 gene for homeodomain protein, partial
Length = 238
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NLSERQV IWFQNRR+K KK
Sbjct: 32 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 211
Query: 378 V 378
+
Sbjct: 212 M 214
>dbj|AK012173.1|AK012173 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2610528H19:homeo box C9, full
insert sequence
Length = 1097
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 587 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 766
Query: 378 VINKLKT 384
+NK KT
Sbjct: 767 -MNKEKT 784
>gb|AF071259.1|AF071259 Danio rerio homeobox protein (hoxc11b) gene, partial cds
Length = 219
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/57 (61%), Positives = 46/57 (80%)
Frame = +1
Query: 322 KKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
KKR PYTK Q++ELERE+ N +I K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 1 KKRCPYTKFQIRELEREFFFNVYINKEKRLQLSRILNLTDRQVKIWFQNRRMKEKKL 171
>ref|NM_008272.1| Mus musculus homeo box C9 (Hoxc9), mRNA
Length = 1434
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 916 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 1095
Query: 378 VINKLKT 384
+NK KT
Sbjct: 1096-MNKEKT 1113
>emb|X55318.1|MMHOX32A Mus musculus Hox-3.2 gene
Length = 1434
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 916 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 1095
Query: 378 VINKLKT 384
+NK KT
Sbjct: 1096-MNKEKT 1113
>emb|X07647.1|MMHOX32 Mouse mRNA for Hox 3.2 protein
Length = 225
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 10 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 189
Query: 378 VINKLKT 384
+NK KT
Sbjct: 190 -MNKEKT 207
>gb|AC011194.15|AC011194 Mus musculus chromosome 11, clone RP23-196F5, complete sequence
Length = 181320
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NLSERQV IWFQNRR+K KK
Sbjct: 70431 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 70610
Query: 378 V 378
+
Sbjct: 70611 M 70613
Score = 66.2 bits (160), Expect = 5e-09
Identities = 39/91 (42%), Positives = 55/91 (59%)
Frame = +3
Query: 296 PPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA 355
PP L TLP + + G++ R YT+ Q ELE+E+ N+++T+ +R I+
Sbjct: 100617 PPPLTGITLPRGSPLTALDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAH 100796
Query: 356 TTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
LSERQ+ IWFQNRR+K KK NKLK+ S
Sbjct: 100797 ALCLSERQIKIWFQNRRMKWKK-DNKLKSMS 100886
Score = 63.5 bits (153), Expect = 3e-08
Identities = 35/83 (42%), Positives = 49/83 (58%), Gaps = 1/83 (1%)
Frame = +2
Query: 305 PDVVSHPSDASSYRRGRKK-RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
P +S P GR++ R Y++ Q ELE+E+ N ++T+ +R +S L+ERQ
Sbjct: 79904 PSPLSRPFPPFPAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQ 80083
Query: 364 VTIWFQNRRVKEKKVINKLKTTS 386
V IWFQNRR+K KK NK K S
Sbjct: 80084 VKIWFQNRRMKWKKENNKDKFPS 80152
Score = 63.5 bits (153), Expect = 3e-08
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R+ R YT QL ELE+E+ NK++ + +R I+A +L+ERQV +WFQNRR+K K+
Sbjct: 148771 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 148941
Score = 62.8 bits (151), Expect = 5e-08
Identities = 31/69 (44%), Positives = 45/69 (64%)
Frame = +1
Query: 309 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
S P A+S ++ R YT QL ELE+E+ N+++ + +R ++ NLSERQ+ IWF
Sbjct: 141430 SPPGSAAS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWF 141597
Query: 369 QNRRVKEKK 377
QNRR+K KK
Sbjct: 141598 QNRRMKYKK 141624
Score = 61.2 bits (147), Expect = 1e-07
Identities = 34/76 (44%), Positives = 48/76 (62%)
Frame = +3
Query: 302 STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
S P V+ S S RRGR+ YT+ Q ELE+E+ N+++T+ +R I+ L+E
Sbjct: 96426 SVSPLCVTGSSFGPSGRRGRQT---YTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTE 96596
Query: 362 RQVTIWFQNRRVKEKK 377
RQ+ IWFQNRR+K KK
Sbjct: 96597 RQIKIWFQNRRMKWKK 96644
Score = 60.8 bits (146), Expect = 2e-07
Identities = 28/54 (51%), Positives = 40/54 (73%)
Frame = +2
Query: 324 RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R +T QL ELE+E+ NK++++ +R I+AT L+E QV IWFQNRR+K+KK
Sbjct: 162635 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 162796
Score = 60.5 bits (145), Expect = 3e-07
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q+ ELE+E+ N+++T+ +R I+ LSERQ+ IWFQNRR+K KK
Sbjct: 115840 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 116010
Score = 59.3 bits (142), Expect = 6e-07
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q ELE+E+ N+++T+ +R I+ T L+ERQ+ IWFQNRR+K KK
Sbjct: 85170 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKK 85340
>gb|M35603.1|MUSHOXMAA Mouse Hox-3.1 gene and Hox-3.2-Hox-3.1 intergenic region
Length = 10272
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 10 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 189
Query: 378 VINKLKT 384
+NK KT
Sbjct: 190 -MNKEKT 207
Score = 60.8 bits (146), Expect = 2e-07
Identities = 30/63 (47%), Positives = 41/63 (64%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
R R Y++ Q ELE+E+ N ++T+ +R +S L+ERQV IWFQNRR+K KK N
Sbjct: 8652 RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN 8831
Query: 381 KLK 383
K K
Sbjct: 8832 KDK 8840
>gb|U61980.1|OAU61980 Ovis aries Hoxc-9 mRNA, partial cds
Length = 444
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 76 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 255
Query: 378 VINKLKT 384
+NK KT
Sbjct: 256 -MNKEKT 273
>gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone RP11-361K8, complete sequence
Length = 168215
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NLSERQV IWFQNRR+K KK
Sbjct: 70256 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 70435
Query: 378 V 378
+
Sbjct: 70436 M 70438
Score = 65.5 bits (158), Expect = 8e-09
Identities = 33/67 (49%), Positives = 47/67 (69%)
Frame = +3
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
G++ R YT+ Q ELE+E+ N+++T+ +R I+ LSERQ+ IWFQNRR+K KK
Sbjct: 100929 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK-D 101105
Query: 380 NKLKTTS 386
NKLK+ S
Sbjct: 101106 NKLKSMS 101126
Score = 64.7 bits (156), Expect = 1e-08
Identities = 51/135 (37%), Positives = 67/135 (48%), Gaps = 3/135 (2%)
Frame = +2
Query: 255 GLGGPGESRHEPLG-LPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPS- 312
GL P H G LP+ + P + N CP PP LP V P
Sbjct: 79694 GLLAPPPPPHGVEGPLPLL*WSPRLVHESSNLLRPCPLPH--PP------LPSVSPFPPF 79849
Query: 313 -DASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
A+ RRGR+ Y++ Q ELE+E+ N ++T+ +R +S L+ERQV IWFQNR
Sbjct: 79850 PAAAGRRRGRQT---YSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNR 80020
Query: 372 RVKEKKVINKLKTTS 386
R+K KK NK K S
Sbjct: 80021 RMKWKKENNKDKFPS 80065
Score = 63.5 bits (153), Expect = 3e-08
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R+ R YT QL ELE+E+ NK++ + +R I+A +L+ERQV +WFQNRR+K K+
Sbjct: 149670 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 149840
Score = 62.8 bits (151), Expect = 5e-08
Identities = 31/69 (44%), Positives = 45/69 (64%)
Frame = +2
Query: 309 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
S P A+S ++ R YT QL ELE+E+ N+++ + +R ++ NLSERQ+ IWF
Sbjct: 142289 SPPGSAAS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWF 142456
Query: 369 QNRRVKEKK 377
QNRR+K KK
Sbjct: 142457 QNRRMKYKK 142483
Score = 61.2 bits (147), Expect = 1e-07
Identities = 34/76 (44%), Positives = 48/76 (62%)
Frame = +3
Query: 302 STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
S P V+ S S RRGR+ YT+ Q ELE+E+ N+++T+ +R I+ L+E
Sbjct: 96669 SASPLCVTGSSFGPSGRRGRQT---YTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTE 96839
Query: 362 RQVTIWFQNRRVKEKK 377
RQ+ IWFQNRR+K KK
Sbjct: 96840 RQIKIWFQNRRMKWKK 96887
Score = 60.8 bits (146), Expect = 2e-07
Identities = 28/54 (51%), Positives = 40/54 (73%)
Frame = +1
Query: 324 RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R +T QL ELE+E+ NK++++ +R I+AT L+E QV IWFQNRR+K+KK
Sbjct: 163696 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 163857
Score = 60.5 bits (145), Expect = 3e-07
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q+ ELE+E+ N+++T+ +R I+ LSERQ+ IWFQNRR+K KK
Sbjct: 116377 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 116547
Score = 59.3 bits (142), Expect = 6e-07
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q ELE+E+ N+++T+ +R I+ T L+ERQ+ IWFQNRR+K KK
Sbjct: 85281 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKK 85451
>gb|AY014302.1|AY014301S2 Homo sapiens HOXC9 gene, exon 2 and complete cds
Length = 390
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 74 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 253
Query: 378 VINKLKT 384
+NK KT
Sbjct: 254 -MNKEKT 271
>emb|Y07698.1|DRHOXA11 D.rerio HOXA-11 gene, partial
Length = 180
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/58 (60%), Positives = 47/58 (80%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 4 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKM 177
>gb|S76303.1|S76303 Hox-C|Hox-3 {clone 27b} [rats, Sprague-Dawley, liver, Genomic, 240
nt]
Length = 240
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 11 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 190
Query: 378 VINKLKT 384
+NK KT
Sbjct: 191 -MNKEKT 208
>gb|U31564.1|HEU31564 Heliocidaris erythrogramma HEHBOX7 (HeHbox7) gene, partial cds
Length = 680
Score = 77.0 bits (188), Expect = 3e-12
Identities = 35/66 (53%), Positives = 50/66 (75%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
R KR PY+K+Q+ ELE+E+ N ++T+D+R ++S +L+ERQV IWFQNRR+K KK+
Sbjct: 161 RTKRRPYSKLQIYELEKEFQANMYLTRDRRSKLSQALDLTERQVKIWFQNRRMKMKKLNE 340
Query: 381 KLKTTS 386
K KT S
Sbjct: 341 KEKTQS 358
>gb|AF071240.1|AF071240 Danio rerio homeobox protein (hoxa11a) gene, complete cds
Length = 1799
Score = 77.0 bits (188), Expect = 3e-12
Identities = 35/60 (58%), Positives = 48/60 (79%)
Frame = +1
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV +WFQNRR+KEKK+
Sbjct: 1555 RFRKKRCPYTKFQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKMWFQNRRMKEKKL 1734
>emb|Z35150.1|BFHOX10G B.floridae Hox-10 gene for homeobox protein (partial)
Length = 287
Score = 77.0 bits (188), Expect = 3e-12
Identities = 34/61 (55%), Positives = 48/61 (77%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R GRKKR PYTK Q+ ELE+E+ N ++++++R+ IS NLS+RQV IWFQNRR+K K+
Sbjct: 33 RVGRKKRCPYTKYQILELEKEFLFNMYVSRERRQEISRHVNLSDRQVKIWFQNRRMKMKR 212
Query: 378 V 378
+
Sbjct: 213 M 215
>ref|NM_021193.1| Homo sapiens homeo box D12 (HOXD12), mRNA
Length = 828
Score = 77.0 bits (188), Expect = 3e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
RKKR PYTK Q+ ELE E+ N+FI + KR+ +S NLS++QV IWFQNRR+K+K+V+
Sbjct: 622 RKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVV 798
>gb|AF071250.1|AF071250 Danio rerio homeobox protein (hoxb10a) gene, partial cds
Length = 700
Score = 77.0 bits (188), Expect = 3e-12
Identities = 35/69 (50%), Positives = 52/69 (74%)
Frame = +2
Query: 316 SYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKE 375
S + GRKKR PY+K Q+ ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K
Sbjct: 281 SAKAGRKKRCPYSKHQILELEKEFLFNMYLTRERRLEISRSINLTDRQVKIWFQNRRMKL 460
Query: 376 KKVINKLKT 384
KK+ + +T
Sbjct: 461 KKMTREHRT 487
>ref|XM_028621.1| Homo sapiens homeo box C10 (HOXC10), mRNA
Length = 1852
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS T NL++RQV IWFQNRR+K KK
Sbjct: 796 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 975
Query: 378 V 378
+
Sbjct: 976 M 978
>gb|U05571.1|SCU05571 Styela clava Ascidian homeobox protein mRNA, partial cds
Length = 1205
Score = 76.6 bits (187), Expect = 3e-12
Identities = 33/58 (56%), Positives = 48/58 (81%)
Frame = +2
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
GRKKRVPYTK QL ELE+E+ N+++++++R+ ++ +LS+RQV IWFQNRR+K KK
Sbjct: 32 GRKKRVPYTKYQLLELEKEFHYNQYLSRERRQEVAKAVSLSDRQVKIWFQNRRMKWKK 205
>gb|BC001293.1|BC001293 Homo sapiens, homeo box C10, clone MGC:5259 IMAGE:3458115, mRNA,
complete cds
Length = 1989
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS T NL++RQV IWFQNRR+K KK
Sbjct: 867 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 1046
Query: 378 V 378
+
Sbjct: 1047M 1049
>gb|AF071267.1|AF071267 Danio rerio homeobox protein (hoxc9a) gene, complete cds
Length = 1990
Score = 76.6 bits (187), Expect = 3e-12
Identities = 38/69 (55%), Positives = 49/69 (70%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 1740 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 1919
Query: 378 VINKLKTTS 386
+NK K S
Sbjct: 1920 -MNKEKNDS 1943
>gb|AF255675.1|AF255675 Homo sapiens homeoprotein C10 (HOXC10) mRNA, complete cds
Length = 1870
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS T NL++RQV IWFQNRR+K KK
Sbjct: 796 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 975
Query: 378 V 378
+
Sbjct: 976 M 978
>ref|NM_017409.1| Homo sapiens homeo box C10 (HOXC10), mRNA
Length = 1870
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS T NL++RQV IWFQNRR+K KK
Sbjct: 796 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 975
Query: 378 V 378
+
Sbjct: 976 M 978
>gb|AF075754.2|AF075754 Holothuria glaberrima homeodomain-containing DNA binding protein 12
(Hbox12) mRNA, partial cds
Length = 720
Score = 76.6 bits (187), Expect = 3e-12
Identities = 34/63 (53%), Positives = 49/63 (76%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
R KR PY+K+Q+ ELE+E+ N ++T+D+R ++S T +L+ERQV IWFQNRR+K KK+
Sbjct: 526 RTKRRPYSKLQIYELEKEFQHNMYLTRDRRAKLSQTLSLTERQVKIWFQNRRMKLKKITR 705
Query: 381 KLK 383
K K
Sbjct: 706 KRK 714
>emb|X63507.1|MMHOX35 M.musculus HOX-3.5 gene
Length = 6343
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/61 (57%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS T NL++RQV IWFQNRR+K KK
Sbjct: 4863 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 5042
Query: 378 V 378
+
Sbjct: 5043 M 5045
>gb|U05600.1|SPU05600 Styela plicata Ascidian homeobox protein gene, partial cds
Length = 543
Score = 76.6 bits (187), Expect = 3e-12
Identities = 33/58 (56%), Positives = 48/58 (81%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
GRKKRVPYTK QL ELE+E+ N+++++++R+ ++ +LS+RQV IWFQNRR+K KK
Sbjct: 115 GRKKRVPYTKYQLLELEKEFHYNQYLSRERRQEVAKAVSLSDRQVKIWFQNRRMKWKK 288
>gb|S73920.1|S73920 Styela clava DNA binding protein AHox2 (AHox2) mRNA, partial cds
Length = 180
Score = 76.6 bits (187), Expect = 3e-12
Identities = 33/58 (56%), Positives = 48/58 (81%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
GRKKRVPYTK QL ELE+E+ N+++++++R+ ++ +LS+RQV IWFQNRR+K KK
Sbjct: 1 GRKKRVPYTKYQLLELEKEFHYNQYLSRERRQEVAKAVSLSDRQVKIWFQNRRMKWKK 174
>gb|S73921.1|S73921 AHox3 [Styela plicata, Genomic, 180 nt]
Length = 180
Score = 76.6 bits (187), Expect = 3e-12
Identities = 33/58 (56%), Positives = 48/58 (81%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
GRKKRVPYTK QL ELE+E+ N+++++++R+ ++ +LS+RQV IWFQNRR+K KK
Sbjct: 1 GRKKRVPYTKYQLLELEKEFHYNQYLSRERRQEVAKAVSLSDRQVKIWFQNRRMKWKK 174
>gb|BC019150.1|BC019150 Mus musculus, homeo box D9, clone MGC:29423 IMAGE:5064578, mRNA,
complete cds
Length = 2188
Score = 76.3 bits (186), Expect = 5e-12
Identities = 40/88 (45%), Positives = 57/88 (64%)
Frame = +2
Query: 291 KEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKR 350
+E+ QPP + L D + ++ R RKKR PYTK Q ELE+E+ N ++T+D+R
Sbjct: 1058 EEEKQPPQPPQQQL-DPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRR 1234
Query: 351 RRISATTNLSERQVTIWFQNRRVKEKKV 378
++ NL+ERQV IWFQNRR+K KK+
Sbjct: 1235 YEVARILNLTERQVKIWFQNRRMKMKKM 1318
>ref|XM_011611.3| Homo sapiens homeo box A10 (HOXA10), mRNA
Length = 1499
Score = 76.3 bits (186), Expect = 5e-12
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Frame = +3
Query: 231 QGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCP 290
Q AGP+ P G+ D+P G +R E ++S P L G G
Sbjct: 966 QQLGAGPFPAQPPGRGF-DLPPALASGSADAARKERA---LDSPPPPTLACGSGGGSQGD 1133
Query: 291 KEQTQPPHLWKSTLPDVVSHPSDAS---------------------SYRRGRKKRVPYTK 329
+E H S ++ PS++S + + GRKKR PYTK
Sbjct: 1134 EEA----HASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTK 1301
Query: 330 VQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1302 HQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 1448
>gb|BC007600.1|BC007600 Homo sapiens, clone IMAGE:3347294, mRNA
Length = 1586
Score = 76.3 bits (186), Expect = 5e-12
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Frame = +3
Query: 231 QGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCP 290
Q AGP+ P G+ D+P G +R E ++S P L G G
Sbjct: 375 QQLGAGPFPAQPPGRGF-DLPPALASGSADAARKERA---LDSPPPPTLACGSGGGSQGD 542
Query: 291 KEQTQPPHLWKSTLPDVVSHPSDAS---------------------SYRRGRKKRVPYTK 329
+E H S ++ PS++S + + GRKKR PYTK
Sbjct: 543 EEA----HASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTK 710
Query: 330 VQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK+
Sbjct: 711 HQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 857
>gb|AF453292.1|AF453292 Sus scrofa homeobox A11 mRNA, partial cds
Length = 215
Score = 76.3 bits (186), Expect = 5e-12
Identities = 34/57 (59%), Positives = 46/57 (80%)
Frame = +2
Query: 322 KKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
KKR PYTK Q++ELERE+ + +I K+KR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 2 KKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 172
>gb|AF071256.1|AF071256 Danio rerio homeobox protein (hoxb9a) gene, complete cds
Length = 2398
Score = 76.3 bits (186), Expect = 5e-12
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 2088 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLTERQVKIWFQNRRMKMKK 2267
Query: 378 V 378
+
Sbjct: 2268 M 2270
>gb|BC013971.1|BC013971 Homo sapiens, clone MGC:12859 IMAGE:4107013, mRNA, complete cds
Length = 2627
Score = 76.3 bits (186), Expect = 5e-12
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Frame = +2
Query: 231 QGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCP 290
Q AGP+ P G+ D+P G +R E ++S P L G G
Sbjct: 707 QQLGAGPFPAQPPGRGF-DLPPALASGSADAARKERA---LDSPPPPTLACGSGGGSQGD 874
Query: 291 KEQTQPPHLWKSTLPDVVSHPSDAS---------------------SYRRGRKKRVPYTK 329
+E H S ++ PS++S + + GRKKR PYTK
Sbjct: 875 EEA----HASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTK 1042
Query: 330 VQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1043HQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 1189
>ref|NM_013555.1| Mus musculus homeo box D9 (Hoxd9), mRNA
Length = 1020
Score = 76.3 bits (186), Expect = 5e-12
Identities = 40/88 (45%), Positives = 57/88 (64%)
Frame = +1
Query: 291 KEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKR 350
+E+ QPP + L D + ++ R RKKR PYTK Q ELE+E+ N ++T+D+R
Sbjct: 730 EEEKQPPQPPQQQL-DPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRR 906
Query: 351 RRISATTNLSERQVTIWFQNRRVKEKKV 378
++ NL+ERQV IWFQNRR+K KK+
Sbjct: 907 YEVARILNLTERQVKIWFQNRRMKMKKM 990
>dbj|D11330.1|MUSHOX36C Mouse Hox 3.6 gene
Length = 180
Score = 76.3 bits (186), Expect = 5e-12
Identities = 35/59 (59%), Positives = 46/59 (77%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
GRKKR PYTK Q ELE+E+ N ++T+++R IS T NL++RQV IWFQNRR+K KK+
Sbjct: 1 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKM 177
>gb|U92572.1|FRU92572 Fugu rubripes homeobox protein HOXC-9 (FrHOXC-9) gene, complete cds;
homeobox protein HOXC-8 (FrHOXC-8) gene, complete cds;
and homeobox protein HOXC-6 (FrHOXC-6) gene, complete cds
Length = 20919
Score = 76.3 bits (186), Expect = 5e-12
Identities = 38/69 (55%), Positives = 49/69 (70%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 3979 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRFEVARVLNLTERQVKIWFQNRRMKMKK 4158
Query: 378 VINKLKTTS 386
+NK K S
Sbjct: 4159 -MNKEKNDS 4182
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/61 (47%), Positives = 41/61 (66%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
R R Y++ Q ELE+E+ N ++T+ +R +S +L+ERQV IWFQNRR+K KK N
Sbjct: 9729 RNGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALSLTERQVKIWFQNRRMKWKKENN 9908
Query: 381 K 381
K
Sbjct: 9909 K 9911
Score = 58.2 bits (139), Expect = 1e-06
Identities = 28/66 (42%), Positives = 43/66 (64%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
R+ R Y++ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+K KK N
Sbjct: 19772 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN 19951
Query: 381 KLKTTS 386
T +
Sbjct: 19952 LTSTVT 19969
>dbj|AB026969.1|AB026969 Oryzias latipes mRNA for HOXB9A, partial cds
Length = 456
Score = 76.3 bits (186), Expect = 5e-12
Identities = 34/60 (56%), Positives = 44/60 (72%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 137 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARALNLTERQVKIWFQNRRMKMKK 316
>gb|AY052760.1| Euprymna scolopes posterior-1 homeodomain protein (Post1) mRNA,
partial cds
Length = 255
Score = 75.9 bits (185), Expect = 6e-12
Identities = 35/64 (54%), Positives = 48/64 (74%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
RK+R PY+K Q+ ELEREYA + +I+K +R +S NLSERQ+ IWFQNRR+K KK+
Sbjct: 43 RKRRRPYSKYQIAELEREYALSTYISKSRRWELSQLLNLSERQIKIWFQNRRIKAKKLQK 222
Query: 381 KLKT 384
+ +T
Sbjct: 223 RDET 234
>dbj|AB026970.1|AB026970 Oryzias latipes mRNA for HOXC9A, complete cds
Length = 1106
Score = 75.9 bits (185), Expect = 6e-12
Identities = 38/69 (55%), Positives = 49/69 (70%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 631 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 810
Query: 378 VINKLKTTS 386
+NK K S
Sbjct: 811 -MNKEKGDS 834
>dbj|AB049973.1|AB049973 Dugesia japonica mRNA for Hox class homeodomain protein DjAbd-Bb,
complete cds
Length = 1641
Score = 75.5 bits (184), Expect = 8e-12
Identities = 47/140 (33%), Positives = 69/140 (48%)
Frame = +2
Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
+++Q P P +P + G P PM + +A N + + T+
Sbjct: 953 NYYQSTPNNASYPTIPYMSGT------PAYNPMYAAASFAASNSLFSSDFFSRFHTEDML 1114
Query: 299 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 358
L +L + + R RKKR PYT+ Q LE E+ N +IT+ KR IS +
Sbjct: 1115 LDSGSLTE---------AEMRSRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLH 1267
Query: 359 LSERQVTIWFQNRRVKEKKV 378
LSERQV +WFQNRR+K+KK+
Sbjct: 1268 LSERQVKVWFQNRRMKKKKL 1327
>ref|NM_002148.1| Homo sapiens homeo box D10 (HOXD10), mRNA
Length = 1126
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 823 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 1002
Query: 378 V 378
+
Sbjct: 1003M 1005
>emb|X59373.1|HSHOX4D Human HOX4D mRNA for a homeobox protein
Length = 1126
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 823 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 1002
Query: 378 V 378
+
Sbjct: 1003M 1005
>gb|BC013463.1|BC013463 Mus musculus, clone MGC:18685 IMAGE:4240579, mRNA, complete cds
Length = 1865
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 840 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 1019
Query: 378 V 378
+
Sbjct: 1020M 1022
>gb|U51413.1|RPU51413 Rasbora paviei Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U51422.1|RHU51422 Rasbora heteromorpha Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U51412.1|DPU51412 Danio pulcher Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U51411.1|DKU51411 Danio kerri Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>emb|X87753.1|DRHOXD12G D.rerio Hoxd-12 gene
Length = 831
Score = 75.5 bits (184), Expect = 8e-12
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 319 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R RKKR PYTK QL ELE E+ N+FI + KR+ +S LS++QV IWFQNRR+K+K++
Sbjct: 619 RSRKKRKPYTKPQLTELENEFMMNEFINRQKRKELSDRLELSDQQVKIWFQNRRMKKKRL 798
Query: 379 INKLKT 384
+ + T
Sbjct: 799 MMREHT 816
>emb|X68976.1|NVHOXD N.viridescens mRNA for Hoxd-10
Length = 1661
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 840 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 1019
Query: 378 V 378
+
Sbjct: 1020M 1022
>gb|U31600.1|HEU31600 Heliocidaris erythrogramma HEHBOX10 (HeHbox10) gene, partial cds
Length = 1318
Score = 75.5 bits (184), Expect = 8e-12
Identities = 39/79 (49%), Positives = 53/79 (66%), Gaps = 8/79 (10%)
Frame = +1
Query: 308 VSHPSDASSYR--------RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNL 359
V+H + ++SY R RKKR PYTK Q ELE+E+ N ++T+D+R IS +L
Sbjct: 64 VNHQTVSASYTWMAPPPNVRTRKKRKPYTKFQTFELEKEFLYNMYLTRDRRSHISRALSL 243
Query: 360 SERQVTIWFQNRRVKEKKV 378
+ERQV IWFQNRR+K KK+
Sbjct: 244 TERQVKIWFQNRRMKLKKM 300
>dbj|D10287.1|CHKCHOX4D Gallus gallus Chox-4d gene for homeodomain protein, partial cds
Length = 494
Score = 75.5 bits (184), Expect = 8e-12
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 249 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 428
Query: 378 V 378
+
Sbjct: 429 M 431
>gb|AF298186.1|AF298186 Ambystoma mexicanum homeodomain protein Hoxc10 short form (Hoxc10)
mRNA, complete cds, alternatively spliced
Length = 1598
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 562 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKK 741
Query: 378 V 378
+
Sbjct: 742 M 744
>gb|AF151673.1|AF151673 Nereis virens Post2 homeobox protein (Post2) gene, partial cds
Length = 838
Score = 75.1 bits (183), Expect = 1e-11
Identities = 37/85 (43%), Positives = 51/85 (59%)
Frame = +1
Query: 300 WKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNL 359
W ++ ++ + R RKKR PYT+ Q LE E+ N +IT+ KR IS +L
Sbjct: 169 WHQSINQSINQCFLITDQPRQRKKRKPYTRYQTMVLENEFMGNSYITRQKRWEISCKLHL 348
Query: 360 SERQVTIWFQNRRVKEKKVINKLKT 384
SERQV +WFQNRR+K KK+ + KT
Sbjct: 349 SERQVKVWFQNRRMKRKKLNERAKT 423
>gb|AF224262.1|AF224262 Heterodontus francisci HoxA10 (HoxA10), HoxA9 (HoxA9), HoxA7 (HoxA7),
HoxA6 (HoxA6), HoxA5 (HoxA5), HoxA4 (HoxA4), HoxA3
(HoxA3), HoxA2 (HoxA2), and HoxA1 (HoxA1) genes, complete
cds
Length = 81196
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 11281 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 11460
Query: 378 V 378
+
Sbjct: 11461 I 11463
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 2257 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 2436
Query: 378 V 378
+
Sbjct: 2437 M 2439
Score = 65.1 bits (157), Expect = 1e-08
Identities = 33/75 (44%), Positives = 50/75 (66%)
Frame = +3
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
+D+ G++ R YT+ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNR
Sbjct: 32562 TDSMGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 32741
Query: 372 RVKEKKVINKLKTTS 386
R+K KK NKLK+ S
Sbjct: 32742 RMKWKK-DNKLKSMS 32783
Score = 63.5 bits (153), Expect = 3e-08
Identities = 31/66 (46%), Positives = 44/66 (65%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
GR+ R YT+ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+K KK
Sbjct: 29299 GRRGRQTYTRFQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 29478
Query: 380 NKLKTT 385
L TT
Sbjct: 29479 KLLNTT 29496
Score = 63.5 bits (153), Expect = 3e-08
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R+ R YT QL ELE+E+ NK++ + +R I+A +L+ERQV +WFQNRR+K K+
Sbjct: 71860 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 72030
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/57 (50%), Positives = 42/57 (72%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q+ ELE+E+ N+++T+ +R I+ T LSERQV IWFQNRR+K KK
Sbjct: 45368 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 45538
Score = 60.8 bits (146), Expect = 2e-07
Identities = 28/54 (51%), Positives = 39/54 (71%)
Frame = +3
Query: 324 RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R +T QL ELE+E+ NK++T+ +R I+A L+E QV IWFQNRR+K+KK
Sbjct: 77985 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQVKIWFQNRRMKQKK 78146
Score = 60.5 bits (145), Expect = 3e-07
Identities = 26/57 (45%), Positives = 40/57 (69%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT QL ELE+E+ N+++ + +R ++ NL+ERQ+ IWFQNRR+K KK
Sbjct: 65615 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 65785
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/57 (45%), Positives = 40/57 (69%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R YT+ Q ELE+E+ N+++T+ +R I+ L+ERQ+ IWFQNRR+K KK
Sbjct: 20435 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 20605
>emb|X68975.1|NVHOXC N.viridescens mRNA for Hoxc-10
Length = 1279
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 248 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKK 427
Query: 378 V 378
+
Sbjct: 428 M 430
>gb|AF298185.1|AF298185 Ambystoma mexicanum homeodomain protein Hoxc10 long form (Hoxc10)
mRNA, complete cds, alternatively spliced
Length = 1846
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 813 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKK 992
Query: 378 V 378
+
Sbjct: 993 M 995
>gb|AF031245.1|AF031245 Ambystoma mexicanum homeobox transcription factor (Hoxd-10) mRNA,
partial cds
Length = 369
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/61 (55%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 139 KSGRKKRSPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 318
Query: 378 V 378
+
Sbjct: 319 M 321
>gb|AF144893.1|AF144893 Priapulus caudatus abdominal-B homeodomain protein (Abd-B) gene,
partial cds
Length = 345
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/68 (52%), Positives = 48/68 (69%)
Frame = +3
Query: 310 HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQ 369
+P + +S RKKR PYTK Q ELE+E+ N +++K KR ++ T NL+ERQV IWFQ
Sbjct: 66 NPLEWTSNVSVRKKRKPYTKYQTLELEKEFLFNAYVSKQKRWELARTLNLTERQVKIWFQ 245
Query: 370 NRRVKEKK 377
NRR+K KK
Sbjct: 246 NRRMKSKK 269
>ref|NM_002142.1| Homo sapiens homeo box A9 (HOXA9), mRNA
Length = 597
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 388 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 567
Query: 378 V 378
+
Sbjct: 568 I 570
>gb|U20941.1|AMU20941 Ambystoma mexicanum homeobox protein Hox-A9 mRNA, partial cds
Length = 450
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 226 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 405
Query: 378 V 378
+
Sbjct: 406 I 408
>ref|NM_010456.1| Mus musculus homeo box A9 (Hoxa9), mRNA
Length = 2271
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 1873 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 2052
Query: 378 V 378
+
Sbjct: 2053 I 2055
>dbj|AB005457.1|AB005457 Mus musculus mRNA for Hoxa-9, complete cds
Length = 2271
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 1873 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 2052
Query: 378 V 378
+
Sbjct: 2053 I 2055
>emb|X13537.1|CSHOX17B Guinea pig mRNA for Hox-1.7 protein (GPK/5)
Length = 1083
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 363 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 542
Query: 378 V 378
+
Sbjct: 543 I 545
>gb|U41813.1|HSU41813 Human class I homeoprotein (HOXA9) mRNA, partial cds
Length = 1433
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 181 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 360
Query: 378 V 378
+
Sbjct: 361 I 363
>gb|U92573.1|FRU92573 Fugu rubripes homeobox protein HOXA-9 (FrHOXA-10) gene, complete cds;
and homeodomain protein HOXA-9 (FrHOXA-9) gene, complete
cds
Length = 13583
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/73 (49%), Positives = 52/73 (70%), Gaps = 3/73 (4%)
Frame = +2
Query: 309 SHPSDASSY---RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 365
S P +A ++ + GRKKR PYTK Q ELE+E+ N ++T+++R IS + L++RQV
Sbjct: 4394 SKPDNAGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKVSTLTDRQVK 4573
Query: 366 IWFQNRRVKEKKV 378
IWFQNRR+K KK+
Sbjct: 4574 IWFQNRRMKLKKM 4612
Score = 73.9 bits (180), Expect = 2e-11
Identities = 33/57 (57%), Positives = 44/57 (76%)
Frame = +3
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
RKKR PYTK Q+ ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 9489 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 9659
>gb|U81511.1|HSU81511 Homo sapiens HOXA-9A and HOXA-9B (HOXA-9) gene, alternatively
spliced, complete cds
Length = 6671
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 5922 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 6101
Query: 378 V 378
+
Sbjct: 6102 I 6104
>gb|AF071268.1|AF071268 Danio rerio homeobox protein (hoxd9a) gene, complete cds
Length = 1400
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 1143 RSTRKKRCPYTKYQTLELEKEFLYNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 1322
Query: 378 V 378
+
Sbjct: 1323 M 1325
>emb|AJ319749.1|XLA319749 Xenopus laevis partial mRNA for homebox protein Hoxa9 (hoxa9 gene)
Length = 357
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 19 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 198
Query: 378 V 378
+
Sbjct: 199 I 201
>ref|XM_088184.1| Homo sapiens homeo box A9 (HOXA9), mRNA
Length = 2036
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 663 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 842
Query: 378 V 378
+
Sbjct: 843 I 845
>ref|XM_002545.1| Homo sapiens homeo box D9 (HOXD9), mRNA
Length = 1134
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 853 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 1032
Query: 378 V 378
+
Sbjct: 1033M 1035
>ref|NM_014213.1| Homo sapiens homeo box D9 (HOXD9), mRNA
Length = 1133
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 853 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 1032
Query: 378 V 378
+
Sbjct: 1033M 1035
>gb|AF071248.1|AF071248 Danio rerio homeobox protein (hoxa9a) gene, complete cds
Length = 1900
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/64 (56%), Positives = 48/64 (74%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
RKKR PYTK Q+ ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK N
Sbjct: 1088 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK-FN 1264
Query: 381 KLKT 384
K +T
Sbjct: 1265 KNET 1276
>emb|X59372.1|HSHOX4C Human HOX4C mRNA for a homeobox protein
Length = 1133
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 853 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 1032
Query: 378 V 378
+
Sbjct: 1033M 1035
>gb|M28449.1|MUSHOXA Mouse Hox-1.7 protein mRNA, 3' end
Length = 821
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 79 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 258
Query: 378 V 378
+
Sbjct: 259 I 261
>emb|X97750.1|GGHOXA9 G.gallus mRNA for Hoxa-9 protein
Length = 577
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 301 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 480
Query: 378 V 378
+
Sbjct: 481 I 483
>emb|X13536.1|CSHOX17A Guinea pig mRNA for Hox-1.7 protein (GPK/6)
Length = 995
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 280 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 459
Query: 378 V 378
+
Sbjct: 460 I 462
>gb|BC006537.1|BC006537 Homo sapiens, clone MGC:1934 IMAGE:2987903, mRNA, complete cds
Length = 2065
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 672 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 851
Query: 378 V 378
+
Sbjct: 852 I 854
>gb|BC010023.1|BC010023 Homo sapiens, Similar to homeo box A9, clone MGC:19648
IMAGE:2987818, mRNA, complete cds
Length = 2065
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 672 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 851
Query: 378 V 378
+
Sbjct: 852 I 854
>gb|AF010258.1|AF010258 Homo sapiens homeodomain protein (HOXA9EC) gene, complete cds
Length = 3325
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 2121 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 2300
Query: 378 V 378
+
Sbjct: 2301 I 2303
>emb|X61916.1|XBHBEX X.borealis homeobox gene, exon
Length = 651
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 235 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 414
Query: 378 V 378
+
Sbjct: 415 I 417
>emb|X62669.1|MMHOX4 M.musculus genes HOX-4.4 and Hox-4.5
Length = 8601
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 7599 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 7778
Query: 378 V 378
+
Sbjct: 7779 M 7781
Score = 73.9 bits (180), Expect = 2e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GR+KR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 2520 KSGREKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 2699
Query: 378 V 378
+
Sbjct: 2700 M 2702
>emb|X15506.1|HSHOX52 Human Hox5.2 gene fragment
Length = 240
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 28 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 207
Query: 378 V 378
+
Sbjct: 208 M 210
>gb|U82759.1|HSU82759 Human homeodomain protein HoxA9 mRNA, complete cds
Length = 917
Score = 74.3 bits (181), Expect = 2e-11
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 638 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLFNLTERQVKIWFQNRRMKMKK 817
Query: 378 V 378
+
Sbjct: 818 I 820
>emb|X13147.1|TGHB4 Sea urchin HB4 gene for homeo domain protein
Length = 420
Score = 74.3 bits (181), Expect = 2e-11
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = +2
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
GRKKR PYTK Q ELE+E+ N ++T+D+R I+ +L+ERQV IWFQNRR+K KK
Sbjct: 155 GRKKRCPYTKFQTLELEKEFLFNMYLTRDRRLEIARLLSLTERQVKIWFQNRRMKMKK 328
>gb|U51421.1|DRU51421 Danio rerio Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U51415.1|DPU51415 Devario pathirana Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U51416.1|DMU51416 Devario malabaricus Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U51409.1|DFU51409 Danio frankei Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U51420.1|DDU51420 Devario devario Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R I+ + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEITKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|AF254953.1|AF254953 Tripneustes gratilla homeodomain protein TgHBox4 mRNA, complete cds
Length = 3634
Score = 74.3 bits (181), Expect = 2e-11
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = +2
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
GRKKR PYTK Q ELE+E+ N ++T+D+R I+ +L+ERQV IWFQNRR+K KK
Sbjct: 881 GRKKRCPYTKFQTLELEKEFLFNMYLTRDRRLEIARLLSLTERQVKIWFQNRRMKMKK 1054
>emb|Y16574.1|LSHOX9 Lineus sanguineus Hox-9 gene
Length = 272
Score = 73.9 bits (180), Expect = 2e-11
Identities = 38/72 (52%), Positives = 50/72 (68%), Gaps = 2/72 (2%)
Frame = +1
Query: 315 SSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 374
S+ R RKKR PYT+ Q LE E+ TN +IT+ KR IS +L+ERQV +WFQNRR+K
Sbjct: 25 STEPRTRKKRKPYTRYQTMVLENEFLTNSYITRQKRWEISCKLHLTERQVKVWFQNRRMK 204
Query: 375 EKKV--INKLKT 384
KK+ +K+KT
Sbjct: 205 RKKLNARSKVKT 240
>gb|AF089743.1|AF089743 Morone saxatilis homeodomain protein Hox-A10 (Hoxa10), homeodomain
protein Hox-A9 (Hoxa9), homeodomain protein Hox-A7
(Hoxa7), homeodomain protein Hox-A5 (Hoxa5), and
homeodomain protein Hox-A4 (Hoxa4) genes, complete cds
Length = 30676
Score = 73.9 bits (180), Expect = 2e-11
Identities = 33/57 (57%), Positives = 44/57 (76%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
RKKR PYTK Q+ ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 7472 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 7642
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 1817 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVHLTDRQVKIWFQNRRMKLKK 1996
Query: 378 V 378
+
Sbjct: 1997 M 1999
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = +2
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
G++ R YT+ Q ELE+E+ N+++T+ +R I+ LSERQ+ IWFQNRR+K KK
Sbjct: 19967 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK-D 20143
Query: 380 NKLKT 384
NKLK+
Sbjct: 20144 NKLKS 20158
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/69 (47%), Positives = 46/69 (65%), Gaps = 2/69 (2%)
Frame = +3
Query: 311 PSDASSYRRG--RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
P +SY G ++ R YT+ Q ELE+E+ N+++T+ +R I+ T LSERQV IWF
Sbjct: 30051 PPVNASYTGGVPKRSRTAYTRQQALELEKEFHFNRYLTRRRRVEIAHTMCLSERQVKIWF 30230
Query: 369 QNRRVKEKK 377
QNRR+K KK
Sbjct: 30231 QNRRMKWKK 30257
Score = 57.0 bits (136), Expect = 3e-06
Identities = 26/57 (45%), Positives = 40/57 (69%)
Frame = +2
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
++ R Y++ Q ELE+E+ N+++T+ +R I+ LSERQ+ IWFQNRR+K KK
Sbjct: 12977 KRGRQTYSRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 13147
>gb|AF353624.1|AF353624 Gallus gallus caudal-type homeobox protein CDXB (CDXB) mRNA,
complete cds
Length = 1453
Score = 73.9 bits (180), Expect = 2e-11
Identities = 52/158 (32%), Positives = 72/158 (44%), Gaps = 6/158 (3%)
Frame = +1
Query: 230 HQGYAAGPYHHHQPVPGYLDMPVVPGLGG--PGESRHEPLGLP-MESYQPWALPNGWN-- 284
H G ++ + P PG L G PG+ + P + P LP
Sbjct: 265 HYGPQREDWNAYGPCPGPSGTAAAAQLSGSSPGQGSYSPAEYSSLHPAAPGGLPPAGTVG 444
Query: 285 GQMYCPKEQTQPPHLW-KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNK 343
Q P Q + W + T+P + R K RV YT Q ELE+E+ N+
Sbjct: 445 TQQVSPTNQRHSSYEWMRKTVPT-----NTTGKTRTKEKYRVVYTDHQRLELEKEFHCNR 609
Query: 344 FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 381
+IT ++ ++A LSERQV IWFQNRR KE+K+I K
Sbjct: 610 YITIRRKSELAANLGLSERQVKIWFQNRRAKERKIIKK 723
>gb|U51423.1|REU51423 Rasbora elegans Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 73.9 bits (180), Expect = 2e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR++ KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMELKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U51414.1|DCU51414 Devario cf. aequipinnatus Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 73.9 bits (180), Expect = 2e-11
Identities = 34/63 (53%), Positives = 47/63 (73%)
Frame = +2
Query: 316 SYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKE 375
S + GRKKR PY+K Q ELE E+ N ++T+++R IS + NL++RQV IWFQNRR+K
Sbjct: 17 SAKSGRKKRCPYSKHQTLELEEEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKL 196
Query: 376 KKV 378
KK+
Sbjct: 197 KKM 205
>dbj|AB026972.1|AB026972 Oryzias latipes mRNA for HOXA9A, complete cds
Length = 1212
Score = 73.9 bits (180), Expect = 2e-11
Identities = 33/57 (57%), Positives = 44/57 (76%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
RKKR PYTK Q+ ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 724 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 894
>ref|NM_013554.1| Mus musculus homeo box D10 (Hoxd10), mRNA
Length = 1023
Score = 73.9 bits (180), Expect = 2e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GR+KR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 790 KSGREKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 969
Query: 378 V 378
+
Sbjct: 970 M 972
>emb|X97819.1|TCZEN T.castaneum mRNA for Zen Tc
Length = 847
Score = 73.9 bits (180), Expect = 2e-11
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Frame = +1
Query: 280 PNGWNGQMYCPKEQTQPPH----LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKEL 335
P+ WN CP + PP+ L T+ ++ + G++ R YT QL EL
Sbjct: 145 PSDWN----CP-QYNAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRARTAYTSAQLVEL 309
Query: 336 EREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK-VINKLKT 384
ERE+ K++++ +R +I+ NLSERQ+ IWFQNRR+K KK +NK+ T
Sbjct: 310 EREFHHGKYLSRPRRIQIAENLNLSERQIKIWFQNRRMKHKKEQMNKVST 459
>emb|X14714.1|MMHOX52 Mus musculus Hox 5.2 gene for homeobox protein
Length = 180
Score = 73.9 bits (180), Expect = 2e-11
Identities = 33/58 (56%), Positives = 44/58 (74%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
RKKR PYTK Q ELE+E+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK+
Sbjct: 4 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 177
>gb|AY052761.1| Euprymna scolopes posterior-2 homeodomain protein (Post2) mRNA,
partial cds
Length = 282
Score = 73.6 bits (179), Expect = 3e-11
Identities = 35/72 (48%), Positives = 46/72 (63%)
Frame = +1
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
S S +GRKKR PYT+ Q LE E+ + +IT+ KR IS L+ERQV +WFQNR
Sbjct: 28 SQGSHETKGRKKRKPYTRYQTMVLENEFLNSSYITRQKRWEISCKLQLTERQVKVWFQNR 207
Query: 372 RVKEKKVINKLK 383
R+K KK+ + K
Sbjct: 208 RMKRKKLNERAK 243
>dbj|AK002670.1|AK002670 Mus musculus adult male kidney cDNA, RIKEN full-length enriched
library, clone:0610025N02:homeo box A10, full insert
sequence
Length = 1712
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 171 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 350
Query: 378 V 378
+
Sbjct: 351 M 353
>gb|U35632.1|HSU35632 Human insulin promoter factor 1 (PDX-1) mRNA, complete cds
Length = 942
Score = 73.6 bits (179), Expect = 3e-11
Identities = 47/148 (31%), Positives = 71/148 (47%)
Frame = +3
Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
A HHH +P L +P H P G E +P L Q+ P +
Sbjct: 246 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVQLPFPWMK 383
Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
+ H WK + + A+ ++ R YT+ QL ELE+E+ NK+I++ +R +
Sbjct: 384 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 551
Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINK 381
+ NL+ER + IWFQNRR+K KK +K
Sbjct: 552 AVMLNLTERHIKIWFQNRRMKWKKEEDK 635
>ref|NM_008263.1| Mus musculus homeo box A10 (Hoxa10), mRNA
Length = 2578
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 1023 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 1202
Query: 378 V 378
+
Sbjct: 1203 M 1205
>gb|L08757.1|MUSHOXAA Mus musculus homeobox protein (Hoxa10) mRNA, complete cds
Length = 2578
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 1023 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 1202
Query: 378 V 378
+
Sbjct: 1203 M 1205
>gb|AF281156.1|AF281156 Sus scrofa homeobox protein A10 mRNA, partial cds
Length = 266
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 35 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 214
Query: 378 V 378
+
Sbjct: 215 M 217
>ref|XM_088187.1| Homo sapiens hypothetical gene LOC155287 (LOC155287), mRNA
Length = 1084
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 619 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 798
Query: 378 V 378
+
Sbjct: 799 M 801
>gb|AF040714.1|AF040714 Homo sapiens homeobox protein A10 (HOXA10) gene, complete cds
Length = 2691
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 2442 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 2621
Query: 378 V 378
+
Sbjct: 2622 M 2624
>gb|M30599.1|HUMHOXAC Human homeobox protein mRNA, partial cds., clone PL1
Length = 249
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 49 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 228
Query: 378 V 378
+
Sbjct: 229 M 231
>emb|X58430.1|HSHOX18 Homo sapiens Hox1.8 gene for homeobox protein
Length = 3510
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +3
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 1500 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 1679
Query: 378 V 378
+
Sbjct: 1680 M 1682
>gb|AF227923.1|AF227923 Tribolium castaneum abdominal-B mRNA, complete cds
Length = 2683
Score = 73.6 bits (179), Expect = 3e-11
Identities = 52/158 (32%), Positives = 75/158 (46%), Gaps = 10/158 (6%)
Frame = +2
Query: 230 HQGYAAGPYHH--HQPVPGYLDMPVVPG--------LGGPGESRHEPLGLPMESYQPWAL 279
+ Y++ HH HQPVP YL G + H+ G + +Y P +
Sbjct: 599 YSAYSSASRHHVDHQPVP-YLTPADDRGRVAAAAAMVAETASFHHDAAGYGLRNYGPEPV 775
Query: 280 PNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREY 339
P+ Y P + S +P + + RKKR PY+K Q ELE+E+
Sbjct: 776 PS----TPYPPPGSLGS--MGVSVPCGTSGNPLEWTGQVTVRKKRKPYSKFQTLELEKEF 937
Query: 340 ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
N +++K KR ++ NL+ERQV IWFQNRR+K KK
Sbjct: 938 LFNAYVSKQKRWELARNLNLTERQVKIWFQNRRMKNKK 1051
>ref|NM_018951.1| Homo sapiens homeo box A10 (HOXA10), mRNA
Length = 1491
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 1258 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 1437
Query: 378 V 378
+
Sbjct: 1438 M 1440
>ref|NM_000209.1| Homo sapiens insulin promoter factor 1, homeodomain transcription
factor (IPF1), mRNA
Length = 1525
Score = 73.6 bits (179), Expect = 3e-11
Identities = 47/148 (31%), Positives = 71/148 (47%)
Frame = +1
Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
A HHH +P L +P H P G E +P L Q+ P +
Sbjct: 331 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVQLPFPWMK 468
Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
+ H WK + + A+ ++ R YT+ QL ELE+E+ NK+I++ +R +
Sbjct: 469 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 636
Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINK 381
+ NL+ER + IWFQNRR+K KK +K
Sbjct: 637 AVMLNLTERHIKIWFQNRRMKWKKEEDK 720
>emb|X99894.1|HSGSFGENE H.sapiens mRNA coding for insulin promoter factor 1
Length = 1525
Score = 73.6 bits (179), Expect = 3e-11
Identities = 47/148 (31%), Positives = 71/148 (47%)
Frame = +1
Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
A HHH +P L +P H P G E +P L Q+ P +
Sbjct: 331 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVQLPFPWMK 468
Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
+ H WK + + A+ ++ R YT+ QL ELE+E+ NK+I++ +R +
Sbjct: 469 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 636
Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINK 381
+ NL+ER + IWFQNRR+K KK +K
Sbjct: 637 AVMLNLTERHIKIWFQNRRMKWKKEEDK 720
>emb|X14715.1|MMHOX53 Mus musculus Hox 5.3 gene for homeobox protein
Length = 180
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
GR+KR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK+
Sbjct: 1 GREKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKM 177
>dbj|AB049972.1|AB049972 Dugesia japonica mRNA for Hox class homeodomain protein DjAbd-Ba,
complete cds
Length = 1477
Score = 73.6 bits (179), Expect = 3e-11
Identities = 35/80 (43%), Positives = 50/80 (61%)
Frame = +2
Query: 302 STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
ST + + +S + RKKR PY++ Q LE EY N +IT+ KR I+ +LSE
Sbjct: 926 STTKSITKSENKSSETVKTRKKRKPYSRYQTMILESEYVGNTYITRQKRWEIACKLHLSE 1105
Query: 362 RQVTIWFQNRRVKEKKVINK 381
RQ+ +WFQNRR+K KK+ N+
Sbjct: 1106 RQIKVWFQNRRMKTKKIKNR 1165
>gb|U30329.1|HSU30329 Human insulin promoter factor 1 (IPF1) mRNA, complete cds
Length = 1428
Score = 73.6 bits (179), Expect = 3e-11
Identities = 47/148 (31%), Positives = 71/148 (47%)
Frame = +3
Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
A HHH +P L +P H P G E +P L Q+ P +
Sbjct: 252 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVQLPFPWMK 389
Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
+ H WK + + A+ ++ R YT+ QL ELE+E+ NK+I++ +R +
Sbjct: 390 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 557
Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINK 381
+ NL+ER + IWFQNRR+K KK +K
Sbjct: 558 AVMLNLTERHIKIWFQNRRMKWKKEEDK 641
>emb|X87750.1|DRHOXD10G D.rerio Hoxd-10 gene
Length = 1032
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/61 (54%), Positives = 47/61 (76%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK
Sbjct: 766 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVSLTDRQVKIWFQNRRMKLKK 945
Query: 378 V 378
+
Sbjct: 946 M 948
>emb|X83450.1|CIHBOX4 C.intestinalis DNA for homeobox (214 bp)
Length = 214
Score = 73.2 bits (178), Expect = 4e-11
Identities = 31/58 (53%), Positives = 46/58 (78%)
Frame = +1
Query: 321 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
R++R PYTK QL ELERE+ N+FI+++ R +I+ L++RQV IWFQNRR+K+K++
Sbjct: 4 RRRRRPYTKYQLSELEREFGANEFISREMREQIAVRVGLNDRQVKIWFQNRRMKKKRM 177
>emb|AJ314827.1|XLA314827 Xenopus laevis partial mRNA for homeobox protein Hox C12 (hoxc12
gene)
Length = 509
Score = 73.2 bits (178), Expect = 4e-11
Identities = 33/70 (47%), Positives = 50/70 (71%)
Frame = +1
Query: 317 YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 376
+ R RKKR PY+K+QL ELE E+ N+ IT+ +RR +S +LS++QV IWFQNRR+ K
Sbjct: 226 HTRSRKKRKPYSKIQLAELEGEFMVNEIITRQRRRELSDRLSLSDQQVKIWFQNRRMLRK 405
Query: 377 KVINKLKTTS 386
+++ + + S
Sbjct: 406 RLLMREQALS 435
>gb|S61771.1|S61771 Hox-1 cluster: Hox-1.8 {homeobox} [mice, Genomic, 183 nt]
Length = 183
Score = 73.2 bits (178), Expect = 4e-11
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 177
>emb|Z35149.1|BFHOX9G B.floridae Hox-9 gene for homeobox protein (partial)
Length = 260
Score = 73.2 bits (178), Expect = 4e-11
Identities = 35/72 (48%), Positives = 49/72 (67%)
Frame = +3
Query: 307 VVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
VV++ + RKKR PYT+ Q ELE+E+ N ++T+++R IS NL+ERQV I
Sbjct: 6 VVANQPGWMNNHSSRKKRCPYTRFQTLELEKEFLYNMYLTRERRYEISQHVNLTERQVKI 185
Query: 367 WFQNRRVKEKKV 378
WFQNRR+K KK+
Sbjct: 186 WFQNRRMKMKKM 221
>gb|U51418.1|DAU51418 Danio aff. tweediei Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 73.2 bits (178), Expect = 4e-11
Identities = 33/61 (54%), Positives = 46/61 (75%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PY K Q ELE+E+ N ++T+++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 23 KSGRKKRCPYPKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U51417.1|DAU51417 Danio aff. albolineatus Hoxd10 gene, exon 2, partial cds
Length = 264
Score = 73.2 bits (178), Expect = 4e-11
Identities = 33/61 (54%), Positives = 46/61 (75%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ GRKKR PYTK Q ELE+E+ N ++T+++R IS + NL++RQV IWF NRR+K KK
Sbjct: 23 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFPNRRMKLKK 202
Query: 378 V 378
+
Sbjct: 203 M 205
>gb|U73854.1|MAU73854 Mesocricetus auratus homeodomain protein PDX1 (pdx1) mRNA, complete
cds
Length = 1488
Score = 73.2 bits (178), Expect = 4e-11
Identities = 49/152 (32%), Positives = 73/152 (47%)
Frame = +1
Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
A HHH P L P GP + EP GL S GQ+ P +
Sbjct: 325 AVAHLHHHLPAQLGLAHPP----SGPFPNGTEPGGLEEPS----------RGQLPFPWMK 462
Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
+ H WK + + A ++ R YT+ QL ELE+E+ NK+I++ +R +
Sbjct: 463 STKAHAWKGQW----AGGAYAVEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 630
Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
+ NL+ER + IWFQNRR+K KK +K +++
Sbjct: 631 AVMLNLTERHIKIWFQNRRMKWKKEEDKKRSS 726
>dbj|D11331.1|MUSHOX18D Mouse Hox 1.8 gene
Length = 180
Score = 73.2 bits (178), Expect = 4e-11
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 177
>emb|Y07697.1|DRHOXA10 D.rerio HOXA-10 gene exon
Length = 180
Score = 73.2 bits (178), Expect = 4e-11
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +1
Query: 320 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
GRKKR PYTK Q ELE+E+ N ++T+++R IS + +L++RQV IWFQNRR+K KK+
Sbjct: 1 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 177
>emb|X62619.1|BMABDBHB B.mori Abd-B gene homeobox
Length = 240
Score = 73.2 bits (178), Expect = 4e-11
Identities = 35/69 (50%), Positives = 47/69 (67%)
Frame = +1
Query: 309 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 368
S+P D + RKKR PY+K Q ELE+E+ N +++K KR ++ NL+ERQV IWF
Sbjct: 4 SNPLDWTGQVTVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLNLTERQVKIWF 183
Query: 369 QNRRVKEKK 377
QNRR+K KK
Sbjct: 184 QNRRMKNKK 210
>emb|AJ131397.1|CSA131397 Cupiennius salei mRNA for abdominal-B
Length = 2814
Score = 72.8 bits (177), Expect = 5e-11
Identities = 49/143 (34%), Positives = 69/143 (47%), Gaps = 4/143 (2%)
Frame = +1
Query: 239 HHHQPVPGYL-DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNG---QMYCPKEQT 294
H QPV + D P VPG PM++ P G ++CP
Sbjct: 787 HTPQPVTYFTEDRPRVPG--------------PMDTVYPQTDTYGLRSFPTDVHCPTTYV 924
Query: 295 QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 354
Q + ++P + + RKKR PY+K Q ELE+E+ N +++K KR ++
Sbjct: 925 QTA---SGSEAMTTTNPLEWTGTVTVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELA 1095
Query: 355 ATTNLSERQVTIWFQNRRVKEKK 377
NL+ERQV IWFQNRR+K KK
Sbjct: 1096RNLNLTERQVKIWFQNRRMKSKK 1164
>dbj|AB028838.1| Homo sapiens mRNA for homeobox protein GSH-2, complete cds
Length = 1262
Score = 72.8 bits (177), Expect = 5e-11
Identities = 34/66 (51%), Positives = 47/66 (70%)
Frame = +3
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
SDAS G++ R +T QL ELERE+++N ++++ +R I+ NLSE+QV IWFQNR
Sbjct: 894 SDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNR 1073
Query: 372 RVKEKK 377
RVK KK
Sbjct: 1074RVKHKK 1091
>dbj|AB027048.1|AB027048 Oryzias latipes MF-Hox13-3 homeobox gene, partial sequence
Length = 118
Score = 72.8 bits (177), Expect = 5e-11
Identities = 37/39 (94%), Positives = 37/39 (94%)
Frame = +2
Query: 328 TKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
TKVQLKELEREYA NKFITKDKRRRISA TNLSERQVTI
Sbjct: 2 TKVQLKELEREYAPNKFITKDKRRRISAQTNLSERQVTI 118
>gb|AF306344.1|AF306343S2 Homo sapiens homeobox protein 2 (GSH2) gene, exon 2 and complete
cds
Length = 491
Score = 72.8 bits (177), Expect = 5e-11
Identities = 34/66 (51%), Positives = 47/66 (70%)
Frame = +2
Query: 312 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
SDAS G++ R +T QL ELERE+++N ++++ +R I+ NLSE+QV IWFQNR
Sbjct: 131 SDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNR 310
Query: 372 RVKEKK 377
RVK KK
Sbjct: 311 RVKHKK 328
>ref|NM_013311.1| Homo sapiens insulin upstream factor 1 (IUF1), mRNA
Length = 852
Score = 72.4 bits (176), Expect = 7e-11
Identities = 46/152 (30%), Positives = 73/152 (47%)
Frame = +1
Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
A HHH +P L +P H P G E +P L + P +
Sbjct: 232 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVHLPFPWMK 369
Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
+ H WK + + A+ ++ R YT+ QL ELE+E+ NK+I++ +R +
Sbjct: 370 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 537
Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
+ NL+ER + IWFQNRR+K KK +K +++
Sbjct: 538 AVMLNLTERHIKIWFQNRRMKWKKEEDKKRSS 633
>gb|AF049893.1|AF049893 Homo sapiens insulin upstream factor 1 (IUF1) mRNA, complete cds
Length = 852
Score = 72.4 bits (176), Expect = 7e-11
Identities = 46/152 (30%), Positives = 73/152 (47%)
Frame = +1
Query: 234 AAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 293
A HHH +P L +P H P G E +P L + P +
Sbjct: 232 AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVHLPFPWMK 369
Query: 294 TQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
+ H WK + + A+ ++ R YT+ QL ELE+E+ NK+I++ +R +
Sbjct: 370 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 537
Query: 354 SATTNLSERQVTIWFQNRRVKEKKVINKLKTT 385
+ NL+ER + IWFQNRR+K KK +K +++
Sbjct: 538 AVMLNLTERHIKIWFQNRRMKWKKEEDKKRSS 633
>dbj|AB026967.1|AB026967 Oryzias latipes mRNA for HOXD9A, complete cds
Length = 923
Score = 72.4 bits (176), Expect = 7e-11
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
R RKKR PYTK Q ELE+E+ N ++T+D+R ++ +L+ERQV IWFQNRR+K KK
Sbjct: 623 RSTRKKRCPYTKYQTLELEKEFLYNMYLTRDRRFEVARILSLTERQVKIWFQNRRMKMKK 802
Query: 378 V 378
+
Sbjct: 803 M 805
>gb|AF172090.1|AF172090 Caenorhabditis elegans homeodomain protein NOB-1A (nob-1) mRNA,
complete cds
Length = 1037
Score = 72.4 bits (176), Expect = 7e-11
Identities = 35/77 (45%), Positives = 51/77 (65%)
Frame = +3
Query: 302 STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
+T P+ H A S+ G+KKR PY K Q+ LE EY+ N+++T +R +SA L E
Sbjct: 423 ATTPNAAMHLPWAISHD-GKKKRQPYKKDQISRLEYEYSVNQYLTNKRRSELSAQLMLDE 599
Query: 362 RQVTIWFQNRRVKEKKV 378
+QV +WFQNRR+K+KK+
Sbjct: 600 KQVKVWFQNRRMKDKKL 650
>dbj|AB055742.1|AB055742 Oryzias latipes MF-hoxA13b gene, partial cds
Length = 118
Score = 72.4 bits (176), Expect = 7e-11
Identities = 36/39 (92%), Positives = 38/39 (97%)
Frame = +2
Query: 328 TKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 366
TKVQLKELEREYA+NKFITKDKRRRISA TNL+ERQVTI
Sbjct: 2 TKVQLKELEREYASNKFITKDKRRRISAQTNLTERQVTI 118
>ref|NM_067173.1| Caenorhabditis elegans
Length = 657
Score = 72.4 bits (176), Expect = 7e-11
Identities = 35/77 (45%), Positives = 51/77 (65%)
Frame = +1
Query: 302 STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 361
+T P+ H A S+ G+KKR PY K Q+ LE EY+ N+++T +R +SA L E
Sbjct: 358 ATTPNAAMHLPWAISHD-GKKKRQPYKKDQISRLEYEYSVNQYLTNKRRSELSAQLMLDE 534
Query: 362 RQVTIWFQNRRVKEKKV 378
+QV +WFQNRR+K+KK+
Sbjct: 535 KQVKVWFQNRRMKDKKL 585
>emb|Z22638.1|HMHOXEXNA H.magnipapillata homeobox containing exon
Length = 1986
Score = 72.4 bits (176), Expect = 7e-11
Identities = 31/66 (46%), Positives = 48/66 (71%)
Frame = +1
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ ++KR+ Y+K QL ELE+E++ N F+ K++R ++ S+RQ+ IWFQNRR+K KK
Sbjct: 793 KHSKRKRMSYSKFQLHELEKEFSFNHFLRKERRTELAKLLKFSDRQIKIWFQNRRMKFKK 972
Query: 378 VINKLK 383
INK+K
Sbjct: 973 EINKVK 990
>gb|AF124593.1|AF124593 Cassiopea xamachana Scox-3 homeodomain protein (Scox-3) mRNA,
partial cds
Length = 989
Score = 72.4 bits (176), Expect = 7e-11
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 5/167 (2%)
Frame = +1
Query: 216 AEEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQ 275
A FS+ +A Y Q P+ Y ++ L G L P++ ++
Sbjct: 118 ATSFSNFTPTYAEYCQSATQPHVSPANPMNSYFELNEASSLSGA-------LAAPLK-HK 273
Query: 276 PWA---LPNGWNGQMYCPKEQTQPPHLW-KSTLPDVVSH-PSDASSYRRGRKKRVPYTKV 330
P+A G T + W KST P+ + P + + R+KR YT+
Sbjct: 274 PFAELGSHTAAGGDTTGSYPSTFHQYSWLKSTNPEFWRNAPGSSPKPQERRRKRTAYTRK 453
Query: 331 QLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
QL ELE+E+ N F+T+++R +++++ +LSERQ+ IWFQNRR+K KK
Sbjct: 454 QLVELEKEFHFNHFLTRERRLQLASSLSLSERQIKIWFQNRRMKWKK 594
>emb|AJ252182.1|HVU252182 Hydra vulgaris partial cnox-3 gene for homeoprotein
Length = 370
Score = 72.4 bits (176), Expect = 7e-11
Identities = 31/66 (46%), Positives = 48/66 (71%)
Frame = +2
Query: 318 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
+ ++KR+ Y+K QL ELE+E++ N F+ K++R ++ S+RQ+ IWFQNRR+K KK
Sbjct: 17 KHSKRKRMTYSKFQLHELEKEFSFNHFLRKERRTELAKLLKFSDRQIKIWFQNRRMKFKK 196
Query: 378 VINKLK 383
INK+K
Sbjct: 197 EINKVK 214
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 19, 2002 12:00 AM
Number of letters in database: 587,334,133
Number of sequences in database: 1,164,257
Lambda K H
0.317 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,788,924,736
Number of Sequences: 1164257
Number of extensions: 28132986
Number of successful extensions: 179290
Number of sequences better than 10.0: 3879
Number of HSP's better than 10.0 without gapping: 54977
Number of HSP's successfully gapped in prelim test: 12956
Number of HSP's that attempted gapping in prelim test: 95337
Number of HSP's gapped (non-prelim): 118453
length of query: 386
length of database: 1,627,433,809
effective HSP length: 137
effective length of query: 249
effective length of database: 1,467,930,600
effective search space: 365514719400
effective search space used: 365514719400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)