TBLASTN 2.2.2 [Dec-14-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 
         (386 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
           1,164,257 sequences; 587,334,133 total letters

Searching... please wait.. done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NM_008264.1|  Mus musculus homeo box A13 (Hoxa13), mRNA       488  e-136
ref|XM_004921.1|  Homo sapiens homeo box A13 (HOXA13), mRNA       481  e-134
ref|NM_000522.1|  Homo sapiens homeo box A13 (HOXA13), mRNA       476  e-132
gb|AY030050.1|  Gallus gallus homeo box A13 (HOXA13) mRNA, c...   332  3e-89
gb|U59322.1|MMU59322  Mus musculus transcription factor HOXA...   330  1e-88
gb|AC004080.2|  Homo sapiens chromosome 7 clone RP1-170O19, ...   323  2e-86
gb|U82827.1|HSU82827  Human transcription factor HOXA13 (HOX...   318  4e-85
gb|AC107365.2|  Danio rerio, clone -241I7, complete sequence      236  2e-60
gb|AF255676.1|AF255676  Homo sapiens homeoprotein C13 (HOXC1...   228  5e-58
ref|NM_017410.1|  Homo sapiens homeo box C13 (HOXC13), mRNA       228  5e-58
gb|AF193796.1|AF193796  Mus musculus homeodomain protein (Ho...   228  5e-58
ref|XM_006804.4|  Homo sapiens homeo box C13 (HOXC13), mRNA       228  5e-58
gb|AF263466.2|AF263466  Homo sapiens HOXC13 (HOXC13) mRNA, c...   228  5e-58
gb|BC002754.1|BC002754  Homo sapiens, homeo box C13, clone M...   228  5e-58
dbj|AK024027.1|AK024027  Homo sapiens cDNA FLJ13965 fis, clo...   228  9e-58
ref|NM_008267.1|  Mus musculus homeo box B13 (Hoxb13), mRNA       220  2e-55
gb|U57051.1|MMU57051  Mus musculus Hoxb-13 mRNA, complete cds     220  2e-55
gb|BC013639.1|BC013639  Mus musculus, homeo box B13, clone M...   220  2e-55
gb|BC007092.1|BC007092  Homo sapiens, homeo box B13, clone M...   216  2e-54
gb|U57052.1|HSU57052  Human Hoxb-13 mRNA, complete cds            216  2e-54
ref|XM_030437.1|  Homo sapiens homeo box B13 (HOXB13), mRNA       216  2e-54
gb|U81599.1|HSU81599  Homo sapiens homeodomain protein HOXB1...   214  8e-54
ref|NM_006361.2|  Homo sapiens homeo box B13 (HOXB13), mRNA       214  8e-54
ref|NM_000523.1|  Homo sapiens homeo box D13 (HOXD13), mRNA       209  3e-52
gb|L09550.1|CHKHOXD13A  Chicken homeobox protein hoxd13 mRNA...   209  3e-52
gb|U20942.1|AMU20942  Ambystoma mexicanum homeobox protein H...   209  4e-52
ref|NM_008275.1|  Mus musculus homeo box D13 (Hoxd13), mRNA       207  1e-51
emb|X99291.1|MMHOXD13  M.musculus hoxd-13 gene                    207  1e-51
gb|AF298184.1|AF298184  Ambystoma mexicanum homeodomain prot...   190  2e-46
emb|X87752.1|DRHOXD13G  D.rerio Hoxd-13 gene                      162  4e-38
emb|AJ314743.1|XLA314743  Xenopus laevis partial mRNA for ho...   148  7e-34
gb|AC021667.21|AC021667  Mus musculus, clone RP23-304J12, co...   137  2e-30
gb|AC107364.1|  Danio rerio, clone -10O19, complete sequence      136  3e-30
gb|AC012531.11|AC012531  Homo sapiens, clone RP11-83K1, comp...   131  9e-29
gb|AF071242.1|AF071242  Danio rerio homeobox protein (hoxa13...   131  1e-28
gb|AF224263.1|AF224263  Heterodontus francisci Evx2 (evx2), ...   130  3e-28
gb|AF071241.1|AF071241  Danio rerio homeobox protein (hoxa13...   128  8e-28
gb|AC015584.18|  Mus musculus, clone RP23-400H17, complete s...   128  1e-27
gb|L35012.1|MUSHOXAE  Mus musculus (clone cos2W3H) Hox gene ...   127  2e-27
gb|AF005220.1|HUMTFHOXD2  Homo sapiens transcription factor ...   127  2e-27
dbj|AB038155.1|AB038155  Homo sapiens mRNA for NUP98-HOXD13 ...   127  2e-27
gb|AC009336.13|AC009336  Homo sapiens chromosome 2, clone RP...   127  2e-27
dbj|AB032481.1|AB032481  Homo sapiens HOXD13 gene for homeob...   127  2e-27
gb|AC091179.5|  Homo sapiens chromosome 17, clone CTD-2377D2...   125  5e-27
dbj|D10290.1|CHKCHOX4G  Gallus gallus Chox-4g gene for homeo...   125  6e-27
gb|S80553.1|S80553  HOX-4 complex: Hox-4.8=homeobox gene [mi...   124  2e-26
emb|AJ335159.1|HSA335159  Homo sapiens genomic sequence surr...   120  2e-25
gb|AF071261.1|AF071261  Danio rerio homeobox protein (hoxc13...   119  5e-25
emb|Y07699.1|DRHOXA13  D.rerio HOXA-13 gene, partial              117  2e-24
gb|AF071262.1|AF071262  Danio rerio homeobox protein (hoxc13...   112  7e-23
emb|AJ335615.1|HSA335615  Homo sapiens genomic sequence surr...   106  3e-21
gb|BC016712.1|BC016712  Homo sapiens, clone IMAGE:4108342, mRNA   103  3e-20
emb|AJ324355.1|HSA324355  Homo sapiens genomic sequence surr...    96  7e-18
gb|AF005219.1|HUMTFHOXD1  Homo sapiens transcription factor ...    91  1e-16
emb|AJ335415.1|HSA335415  Homo sapiens genomic sequence surr...    91  1e-16
ref|NM_014212.1|  Homo sapiens homeo box C11 (HOXC11), mRNA        86  4e-15
emb|AJ000041.1|HSHOXC11P  Homo sapiens mRNA for HOXC11             86  4e-15
gb|BC001543.1|BC001543  Homo sapiens, homeo box C11, clone M...    86  4e-15
ref|XM_012215.3|  Homo sapiens homeo box C11 (HOXC11), mRNA        86  4e-15
gb|M81249.1|CHKHOXA  Gallus gallus homeodomain-containing pr...    86  7e-15
gb|AF151672.1|AF151672  Nereis virens Post1 homeobox protein...    84  2e-14
emb|X99679.1|HSHOXC13  H.sapiens mRNA for HOXC13 protein           84  3e-14
gb|M81250.1|CHKHOXB  Gallus gallus homeodomain-containing pr...    83  4e-14
ref|NM_021192.1|  Homo sapiens homeo box D11 (HOXD11), mRNA        83  4e-14
emb|AJ319668.1|XLA319668  Xenopus laevis partial mRNA for ho...    83  5e-14
gb|AF031481.1|AF031481  Ambystoma mexicanum homeobox transcr...    83  5e-14
ref|NM_008273.1|  Mus musculus homeo box D11 (Hoxd11), mRNA        82  6e-14
emb|X57674.1|NVNVHBOX2  N.viridescens RNA for homeobox gene ...    82  6e-14
ref|NM_005523.3|  Homo sapiens homeo box A11 (HOXA11), mRNA        82  6e-14
dbj|D10288.1|CHKCHOX4E  Gallus gallus Chox-4e gene for homeo...    82  1e-13
emb|X60395.1|MMHOX46  M.musculus Hox-4.6 gene                      82  1e-13
emb|X71422.1|MMHOXD11  M.musculus Hoxd-11 gene                     82  1e-13
emb|X60762.1|MMHOX46E2  M.musculus Hox-4.6 gene, exon 2            82  1e-13
gb|AF154915.1|AF154915  Homo sapiens transcription factor HO...    82  1e-13
gb|U20370.1|MMU20370  Mus musculus homeobox protein (Hoxa11)...    81  2e-13
ref|NM_010450.1|  Mus musculus homeo box A11 (Hoxa11), mRNA        81  2e-13
gb|AF071164.1|AF071164  Homo sapiens homeobox A11 (HOXA11) g...    80  2e-13
gb|AF039307.1|AF039307  Homo sapiens homeobox A11 (HOXA11) g...    80  2e-13
gb|AF287137.1|AF287137  Danio rerio Hoxa-11b gene, complete cds    80  3e-13
gb|AF287136.1|AF287136  Danio aequipinnatus Hoxa-11b gene, c...    80  3e-13
emb|X58849.1|MMHOX47  Murine Hox-4.7 gene                          80  3e-13
gb|AF144679.1|AF144679  Lingula anatina Post-1 homeodomain p...    80  4e-13
gb|AF287138.1|AF287138  Danio rerio Hoxa-11a gene, complete cds    80  4e-13
gb|AF042652.1|AF042652  Strongylocentrotus purpuratus homeod...    80  4e-13
ref|NM_008274.1|  Mus musculus homeo box D12 (Hoxd12), mRNA        80  4e-13
gb|U20371.1|MMU20371  Mus musculus homeobox protein (Hoxa11)...    80  4e-13
gb|BC015565.1|BC015565  Homo sapiens, homeo box B9, clone MG...    79  5e-13
gb|L35011.1|MUSHOXAD  Mus musculus (clone cos2W3E) Hox gene ...    79  5e-13
gb|AF328962.1|AF328963S2  Homo sapiens HOXC12 gene, exon 2 a...    79  5e-13
ref|NM_024017.1|  Homo sapiens homeo box B9 (HOXB9), mRNA          79  5e-13
emb|X83451.1|CIHBOX5  C.intestinalis DNA for homeobox (435 bp)     79  5e-13
emb|X62019.1|GGGHOX  G.gallus Ghox 4.7 mRNA                        79  7e-13
gb|L35010.1|MUSHOXAC  Mus musculus (clone cos2W3A) Hox gene ...    79  7e-13
gb|AF276815.1|AF276815  Branchiostoma floridae homeodomain-c...    79  7e-13
ref|XM_087004.1|  Homo sapiens similar to homeo box D12 (LOC...    79  7e-13
emb|X87751.1|DRHOXD11G  D.rerio Hoxd-11 gene                       79  7e-13
ref|XM_010803.1|  Homo sapiens homeo box D12 (HOXD12), mRNA        79  7e-13
dbj|D10289.1|CHKCHOX4F  Gallus gallus Chox-4f gene for homeo...    79  7e-13
gb|AF071260.1|AF071260  Danio rerio homeobox protein (hoxc12...    79  9e-13
gb|M34857.1|MUSHOX25A  Mouse Hox-2.5 mRNA                          79  9e-13
ref|XM_028620.2|  Homo sapiens homeo box C9 (HOXC9), mRNA          79  9e-13
dbj|AK056414.1|AK056414  Homo sapiens cDNA FLJ31852 fis, clo...    79  9e-13
dbj|AK000445.1|AK000445  Homo sapiens cDNA FLJ20438 fis, clo...    79  9e-13
dbj|AB026968.1|AB026968  Oryzias latipes gene for HOXD9B, pa...    78  1e-12
dbj|AK056123.1|AK056123  Homo sapiens cDNA FLJ31561 fis, clo...    78  1e-12
gb|AF071258.1|AF071258  Danio rerio homeobox protein (hoxc11...    78  2e-12
gb|AY014296.1|AY014295S2  Homo sapiens HOXB9 gene, exon 2 an...    77  2e-12
gb|S66855.1|S66855  HoxB9=Hox-2.5 [mice, embryos, mRNA Parti...    77  2e-12
emb|X16172.1|HSHOX25  Human HOX-2.5 gene for homeodomain pro...    77  2e-12
dbj|AK012173.1|AK012173  Mus musculus 10 days embryo whole b...    77  2e-12
gb|AF071259.1|AF071259  Danio rerio homeobox protein (hoxc11...    77  2e-12
ref|NM_008272.1|  Mus musculus homeo box C9 (Hoxc9), mRNA          77  2e-12
emb|X55318.1|MMHOX32A  Mus musculus Hox-3.2 gene                   77  2e-12
emb|X07647.1|MMHOX32  Mouse mRNA for Hox 3.2 protein               77  2e-12
gb|AC011194.15|AC011194  Mus musculus chromosome 11, clone R...    77  2e-12
gb|M35603.1|MUSHOXMAA  Mouse Hox-3.1 gene and Hox-3.2-Hox-3....    77  2e-12
gb|U61980.1|OAU61980  Ovis aries Hoxc-9 mRNA, partial cds          77  2e-12
gb|AC009789.21|AC009789  Homo sapiens chromosome 17, clone R...    77  2e-12
gb|AY014302.1|AY014301S2  Homo sapiens HOXC9 gene, exon 2 an...    77  2e-12
emb|Y07698.1|DRHOXA11  D.rerio HOXA-11 gene, partial               77  2e-12
gb|S76303.1|S76303  Hox-C|Hox-3 {clone 27b} [rats, Sprague-D...    77  2e-12
gb|U31564.1|HEU31564  Heliocidaris erythrogramma HEHBOX7 (He...    77  3e-12
gb|AF071240.1|AF071240  Danio rerio homeobox protein (hoxa11...    77  3e-12
emb|Z35150.1|BFHOX10G  B.floridae Hox-10 gene for homeobox p...    77  3e-12
ref|NM_021193.1|  Homo sapiens homeo box D12 (HOXD12), mRNA        77  3e-12
gb|AF071250.1|AF071250  Danio rerio homeobox protein (hoxb10...    77  3e-12
ref|XM_028621.1|  Homo sapiens homeo box C10 (HOXC10), mRNA        77  3e-12
gb|U05571.1|SCU05571  Styela clava Ascidian homeobox protein...    77  3e-12
gb|BC001293.1|BC001293  Homo sapiens, homeo box C10, clone M...    77  3e-12
gb|AF071267.1|AF071267  Danio rerio homeobox protein (hoxc9a...    77  3e-12
gb|AF255675.1|AF255675  Homo sapiens homeoprotein C10 (HOXC1...    77  3e-12
ref|NM_017409.1|  Homo sapiens homeo box C10 (HOXC10), mRNA        77  3e-12
gb|AF075754.2|AF075754  Holothuria glaberrima homeodomain-co...    77  3e-12
emb|X63507.1|MMHOX35  M.musculus HOX-3.5 gene                      77  3e-12
gb|U05600.1|SPU05600  Styela plicata Ascidian homeobox prote...    77  3e-12
gb|S73920.1|S73920  Styela clava DNA binding protein AHox2 (...    77  3e-12
gb|S73921.1|S73921  AHox3 [Styela plicata, Genomic, 180 nt]        77  3e-12
gb|BC019150.1|BC019150  Mus musculus, homeo box D9, clone MG...    76  5e-12
ref|XM_011611.3|  Homo sapiens homeo box A10 (HOXA10), mRNA        76  5e-12
gb|BC007600.1|BC007600  Homo sapiens, clone IMAGE:3347294, mRNA    76  5e-12
gb|AF453292.1|AF453292  Sus scrofa homeobox A11 mRNA, partia...    76  5e-12
gb|AF071256.1|AF071256  Danio rerio homeobox protein (hoxb9a...    76  5e-12
gb|BC013971.1|BC013971  Homo sapiens, clone MGC:12859 IMAGE:...    76  5e-12
ref|NM_013555.1|  Mus musculus homeo box D9 (Hoxd9), mRNA          76  5e-12
dbj|D11330.1|MUSHOX36C  Mouse Hox 3.6 gene                         76  5e-12
gb|U92572.1|FRU92572  Fugu rubripes homeobox protein HOXC-9 ...    76  5e-12
dbj|AB026969.1|AB026969  Oryzias latipes mRNA for HOXB9A, pa...    76  5e-12
gb|AY052760.1|  Euprymna scolopes posterior-1 homeodomain pr...    76  6e-12
dbj|AB026970.1|AB026970  Oryzias latipes mRNA for HOXC9A, co...    76  6e-12
dbj|AB049973.1|AB049973  Dugesia japonica mRNA for Hox class...    75  8e-12
ref|NM_002148.1|  Homo sapiens homeo box D10 (HOXD10), mRNA        75  8e-12
emb|X59373.1|HSHOX4D  Human HOX4D mRNA for a homeobox protein      75  8e-12
gb|BC013463.1|BC013463  Mus musculus, clone MGC:18685 IMAGE:...    75  8e-12
gb|U51413.1|RPU51413  Rasbora paviei Hoxd10 gene, exon 2, pa...    75  8e-12
gb|U51422.1|RHU51422  Rasbora heteromorpha Hoxd10 gene, exon...    75  8e-12
gb|U51412.1|DPU51412  Danio pulcher Hoxd10 gene, exon 2, par...    75  8e-12
gb|U51411.1|DKU51411  Danio kerri Hoxd10 gene, exon 2, parti...    75  8e-12
emb|X87753.1|DRHOXD12G  D.rerio Hoxd-12 gene                       75  8e-12
emb|X68976.1|NVHOXD  N.viridescens mRNA for Hoxd-10                75  8e-12
gb|U31600.1|HEU31600  Heliocidaris erythrogramma HEHBOX10 (H...    75  8e-12
dbj|D10287.1|CHKCHOX4D  Gallus gallus Chox-4d gene for homeo...    75  8e-12
gb|AF298186.1|AF298186  Ambystoma mexicanum homeodomain prot...    75  1e-11
gb|AF151673.1|AF151673  Nereis virens Post2 homeobox protein...    75  1e-11
gb|AF224262.1|AF224262  Heterodontus francisci HoxA10 (HoxA1...    75  1e-11
emb|X68975.1|NVHOXC  N.viridescens mRNA for Hoxc-10                75  1e-11
gb|AF298185.1|AF298185  Ambystoma mexicanum homeodomain prot...    75  1e-11
gb|AF031245.1|AF031245  Ambystoma mexicanum homeobox transcr...    75  1e-11
gb|AF144893.1|AF144893  Priapulus caudatus abdominal-B homeo...    75  1e-11
ref|NM_002142.1|  Homo sapiens homeo box A9 (HOXA9), mRNA          75  1e-11
gb|U20941.1|AMU20941  Ambystoma mexicanum homeobox protein H...    75  1e-11
ref|NM_010456.1|  Mus musculus homeo box A9 (Hoxa9), mRNA          75  1e-11
dbj|AB005457.1|AB005457  Mus musculus mRNA for Hoxa-9, compl...    75  1e-11
emb|X13537.1|CSHOX17B  Guinea pig mRNA for Hox-1.7 protein (...    75  1e-11
gb|U41813.1|HSU41813  Human class I homeoprotein (HOXA9) mRN...    75  1e-11
gb|U92573.1|FRU92573  Fugu rubripes homeobox protein HOXA-9 ...    75  1e-11
gb|U81511.1|HSU81511  Homo sapiens HOXA-9A and HOXA-9B (HOXA...    75  1e-11
gb|AF071268.1|AF071268  Danio rerio homeobox protein (hoxd9a...    75  1e-11
emb|AJ319749.1|XLA319749  Xenopus laevis partial mRNA for ho...    75  1e-11
ref|XM_088184.1|  Homo sapiens homeo box A9 (HOXA9), mRNA          75  1e-11
ref|XM_002545.1|  Homo sapiens homeo box D9 (HOXD9), mRNA          75  1e-11
ref|NM_014213.1|  Homo sapiens homeo box D9 (HOXD9), mRNA          75  1e-11
gb|AF071248.1|AF071248  Danio rerio homeobox protein (hoxa9a...    75  1e-11
emb|X59372.1|HSHOX4C  Human HOX4C mRNA for a homeobox protein      75  1e-11
gb|M28449.1|MUSHOXA  Mouse Hox-1.7 protein mRNA, 3' end            75  1e-11
emb|X97750.1|GGHOXA9  G.gallus mRNA for Hoxa-9 protein             75  1e-11
emb|X13536.1|CSHOX17A  Guinea pig mRNA for Hox-1.7 protein (...    75  1e-11
gb|BC006537.1|BC006537  Homo sapiens, clone MGC:1934 IMAGE:2...    75  1e-11
gb|BC010023.1|BC010023  Homo sapiens, Similar to homeo box A...    75  1e-11
gb|AF010258.1|AF010258  Homo sapiens homeodomain protein (HO...    75  1e-11
emb|X61916.1|XBHBEX  X.borealis homeobox gene, exon                75  1e-11
emb|X62669.1|MMHOX4  M.musculus genes HOX-4.4 and Hox-4.5          75  1e-11
emb|X15506.1|HSHOX52  Human Hox5.2 gene fragment                   75  1e-11
gb|U82759.1|HSU82759  Human homeodomain protein HoxA9 mRNA, ...    74  2e-11
emb|X13147.1|TGHB4  Sea urchin HB4 gene for homeo domain pro...    74  2e-11
gb|U51421.1|DRU51421  Danio rerio Hoxd10 gene, exon 2, parti...    74  2e-11
gb|U51415.1|DPU51415  Devario pathirana Hoxd10 gene, exon 2,...    74  2e-11
gb|U51416.1|DMU51416  Devario malabaricus Hoxd10 gene, exon ...    74  2e-11
gb|U51409.1|DFU51409  Danio frankei Hoxd10 gene, exon 2, par...    74  2e-11
gb|U51420.1|DDU51420  Devario devario Hoxd10 gene, exon 2, p...    74  2e-11
gb|AF254953.1|AF254953  Tripneustes gratilla homeodomain pro...    74  2e-11
emb|Y16574.1|LSHOX9  Lineus sanguineus Hox-9 gene                  74  2e-11
gb|AF089743.1|AF089743  Morone saxatilis homeodomain protein...    74  2e-11
gb|AF353624.1|AF353624  Gallus gallus caudal-type homeobox p...    74  2e-11
gb|U51423.1|REU51423  Rasbora elegans Hoxd10 gene, exon 2, p...    74  2e-11
gb|U51414.1|DCU51414  Devario cf. aequipinnatus Hoxd10 gene,...    74  2e-11
dbj|AB026972.1|AB026972  Oryzias latipes mRNA for HOXA9A, co...    74  2e-11
ref|NM_013554.1|  Mus musculus homeo box D10 (Hoxd10), mRNA        74  2e-11
emb|X97819.1|TCZEN  T.castaneum mRNA for Zen Tc                    74  2e-11
emb|X14714.1|MMHOX52  Mus musculus Hox 5.2 gene for homeobox...    74  2e-11
gb|AY052761.1|  Euprymna scolopes posterior-2 homeodomain pr...    74  3e-11
dbj|AK002670.1|AK002670  Mus musculus adult male kidney cDNA...    74  3e-11
gb|U35632.1|HSU35632  Human insulin promoter factor 1 (PDX-1...    74  3e-11
ref|NM_008263.1|  Mus musculus homeo box A10 (Hoxa10), mRNA        74  3e-11
gb|L08757.1|MUSHOXAA  Mus musculus homeobox protein (Hoxa10)...    74  3e-11
gb|AF281156.1|AF281156  Sus scrofa homeobox protein A10 mRNA...    74  3e-11
ref|XM_088187.1|  Homo sapiens hypothetical gene LOC155287 (...    74  3e-11
gb|AF040714.1|AF040714  Homo sapiens homeobox protein A10 (H...    74  3e-11
gb|M30599.1|HUMHOXAC  Human homeobox protein mRNA, partial c...    74  3e-11
emb|X58430.1|HSHOX18  Homo sapiens Hox1.8 gene for homeobox ...    74  3e-11
gb|AF227923.1|AF227923  Tribolium castaneum abdominal-B mRNA...    74  3e-11
ref|NM_018951.1|  Homo sapiens homeo box A10 (HOXA10), mRNA        74  3e-11
ref|NM_000209.1|  Homo sapiens insulin promoter factor 1, ho...    74  3e-11
emb|X99894.1|HSGSFGENE  H.sapiens mRNA coding for insulin pr...    74  3e-11
emb|X14715.1|MMHOX53  Mus musculus Hox 5.3 gene for homeobox...    74  3e-11
dbj|AB049972.1|AB049972  Dugesia japonica mRNA for Hox class...    74  3e-11
gb|U30329.1|HSU30329  Human insulin promoter factor 1 (IPF1)...    74  3e-11
emb|X87750.1|DRHOXD10G  D.rerio Hoxd-10 gene                       74  3e-11
emb|X83450.1|CIHBOX4  C.intestinalis DNA for homeobox (214 bp)     73  4e-11
emb|AJ314827.1|XLA314827  Xenopus laevis partial mRNA for ho...    73  4e-11
gb|S61771.1|S61771  Hox-1 cluster: Hox-1.8 {homeobox} [mice,...    73  4e-11
emb|Z35149.1|BFHOX9G  B.floridae Hox-9 gene for homeobox pro...    73  4e-11
gb|U51418.1|DAU51418  Danio aff. tweediei Hoxd10 gene, exon ...    73  4e-11
gb|U51417.1|DAU51417  Danio aff. albolineatus Hoxd10 gene, e...    73  4e-11
gb|U73854.1|MAU73854  Mesocricetus auratus homeodomain prote...    73  4e-11
dbj|D11331.1|MUSHOX18D  Mouse Hox 1.8 gene                         73  4e-11
emb|Y07697.1|DRHOXA10  D.rerio HOXA-10 gene exon                   73  4e-11
emb|X62619.1|BMABDBHB  B.mori Abd-B gene homeobox                  73  4e-11
emb|AJ131397.1|CSA131397  Cupiennius salei mRNA for abdominal-B    73  5e-11
dbj|AB028838.1|  Homo sapiens mRNA for homeobox protein GSH-...    73  5e-11
dbj|AB027048.1|AB027048  Oryzias latipes MF-Hox13-3 homeobox...    73  5e-11
gb|AF306344.1|AF306343S2  Homo sapiens homeobox protein 2 (G...    73  5e-11
ref|NM_013311.1|  Homo sapiens insulin upstream factor 1 (IU...    72  7e-11
gb|AF049893.1|AF049893  Homo sapiens insulin upstream factor...    72  7e-11
dbj|AB026967.1|AB026967  Oryzias latipes mRNA for HOXD9A, co...    72  7e-11
gb|AF172090.1|AF172090  Caenorhabditis elegans homeodomain p...    72  7e-11
dbj|AB055742.1|AB055742  Oryzias latipes MF-hoxA13b gene, pa...    72  7e-11
ref|NM_067173.1|  Caenorhabditis elegans                           72  7e-11
emb|Z22638.1|HMHOXEXNA  H.magnipapillata homeobox containing...    72  7e-11
gb|AF124593.1|AF124593  Cassiopea xamachana Scox-3 homeodoma...    72  7e-11
emb|AJ252182.1|HVU252182  Hydra vulgaris partial cnox-3 gene...    72  7e-11
dbj|AB026971.1|AB026971  Oryzias latipes mRNA for HOXA9B, co...    72  8e-11
gb|AF124594.1|AF124594  Cassiopea xamachana Scox-4 homeodoma...    72  1e-10
gb|AF172092.1|AF172092  Caenorhabditis elegans homeodomain p...    72  1e-10
dbj|D11329.1|MUSHOX35B  Mouse Hox 3.5 mRNA                         72  1e-10
ref|NM_067172.1|  Homeobox domain                                  72  1e-10
gb|S79041.1|S79041  Gsh-2=dispersed homeobox gene [mice, NIH...    71  1e-10
emb|Y07696.1|DRHOXA9  D.rerio HOXA-9 gene exon                     71  1e-10
gb|AF071249.1|AF071249  Danio rerio homeobox protein (hoxa9b...    71  1e-10
ref|NM_010451.1|  Mus musculus homeo box A2 (Hoxa2), mRNA          71  2e-10
gb|M95599.1|MUSHOMEO  Mus musculus homeobox-containing prote...    71  2e-10
emb|X69161.1|SGABDBG  S.gregaria Abd-B gene                        71  2e-10
gb|M93292.1|MUSHOX111B  Mouse homeobox protein (Hox1.11) mRN...    71  2e-10
gb|U04838.1|MMU04838  Mus musculus C57BL/6J homeobox protein...    71  2e-10
ref|NM_012581.1|  Rattus norvegicus homeobox A2 (Hoxa2), mRNA      71  2e-10
gb|M91802.1|RATHOX111A  Rattus norvegicus homeobox protein (...    71  2e-10
dbj|AB027049.1|AB027049  Oryzias latipes MF-Hox13-2 homeobox...    70  2e-10
ref|XM_062808.2|  Homo sapiens similar to bA438F9.1 (novel p...    70  2e-10
dbj|AB044157.1|AB044157  Homo sapiens mRNA for homeobox prot...    70  2e-10
dbj|AB027047.1|AB027047  Oryzias latipes MF-Hox13-1 homeobox...    70  3e-10
gb|J03770.1|MUSHOX42A  Mouse homeobox protein (hox-4.2) mRNA...    70  4e-10
emb|AJ133025.1|MAB133025  Megaselia abdita zen gene, exons 1-2     70  4e-10
gb|AF124592.1|AF124592  Cassiopea xamachana Scox-2 homeodoma...    70  4e-10
gb|AY036893.1|  Podocoryne carnea transcription factor Cnox4...    69  6e-10
gb|AF321227.1|AF321227  Tribolium castaneum Ftz (ftz), Scr (...    69  6e-10
gb|AF071257.1|AF071257  Danio rerio homeobox protein (hoxc10...    69  6e-10
emb|AJ005421.1|TCAJ5421  Tribolium castaneum mRNA for caudal...    69  6e-10
ref|NM_022852.1|  Rattus norvegicus pancreatic and duodenal ...    69  7e-10
gb|U04833.1|RNU04833  Rattus norvegicus NEDH islet/duodenum ...    69  7e-10
gb|S67435.1|S67435  somatostatin transactivating factor-1 [r...    69  7e-10
ref|NM_013553.1|  Mus musculus homeo box C4 (Hoxc4), mRNA          69  9e-10
emb|X69019.1|MMHOX35MR  M.musculus Hox-3.5 mRNA                    69  9e-10
gb|AF144680.1|AF144680  Lingula anatina Post-2 homeodomain p...    69  9e-10
emb|X74323.1|GDHOXA2  G.gallus mRNA for Hoxa2 protein              69  9e-10
emb|X16134.1|DMABDBP3  Drosophila Abd-B P3 mRNA                    69  9e-10
gb|AF144892.1|AF144892  Priapulus caudatus HB4 homeodomain p...    69  9e-10
gb|M21173.1|DROBXCA  D.melanogaster iab-7 mRNA, partial cds,...    69  9e-10
ref|XM_082445.1|  Abdominal B, mRNA                                69  9e-10
emb|X15080.1|DMBX189B  Drosophila pH189 mRNA of distal BX-C ...    69  9e-10
gb|AF043432.2|AF043432  Gallus gallus Mox-1 related protein ...    69  9e-10
dbj|AK016033.1|AK016033  Mus musculus adult male testis cDNA...    69  9e-10
dbj|AK020261.1|AK020261  Mus musculus adult male cecum cDNA,...    69  9e-10
ref|NM_080157.1|  Drosophila melanogaster Abdominal B (Abd-B...    69  9e-10
emb|X51663.1|DMABDBCLA  D.melanogaster RNA for Abd-B gene, c...    69  9e-10
ref|NM_008814.1|  Mus musculus pancreatic and duodenal homeo...    69  9e-10
emb|X74342.1|MMIPF1  M.musculus mRNA for IPF1 protein              69  9e-10
gb|M26884.1|XELHOXAB2  X.laevis homeobox protein (Hox1A) gen...    69  9e-10
ref|NM_014620.1|  Homo sapiens homeo box C4 (HOXC4), mRNA          69  9e-10
emb|X07495.1|HSHOX329  Human mRNA for cp19 homeobox from HOX...    69  9e-10
ref|NM_008178.1|  Mus musculus genomic screened homeo box 1 ...    68  1e-09
gb|U21224.1|MMU21224  Mus musculus homeobox Gsh-1 mRNA, comp...    68  1e-09
ref|NM_010469.1|  Mus musculus homeo box D4 (Hoxd4), mRNA          68  1e-09
gb|U32943.1|SAU32943  Schistocerca americana Antennapedia ho...    68  1e-09
ref|NG_000242.1|  Drosophila melanogaster bicoid (bcd) on ch...    68  1e-09
emb|AL390738.4|AL390738  Human DNA sequence from clone RP11-...    68  1e-09
gb|AE003674.2|AE003674  Drosophila melanogaster genomic scaf...    68  1e-09
emb|X68347.1|SZEN1A  Drosophila sp. zerknuellt (zen) z1 gene       68  1e-09
gb|U04302.1|U04302  Xenopus laevis homeobox protein (xCAD2) ...    68  1e-09
gb|AE001572.2|AE001572  Drosophila melanogaster Antennapedia...    68  1e-09
ref|NM_057445.1|  Drosophila melanogaster zerknullt (zen), t...    68  1e-09
gb|AC002512.1|AC002512  Drosophila melanogaster (P1 DS00276 ...    68  1e-09
gb|AC095014.1|  Drosophila melanogaster, chromosome 3R, regi...    68  1e-09
dbj|AB044158.1|AB044158  Homo sapiens gene for homeobox prot...    68  1e-09
gb|U19238.1|AMU19238  Ambystoma mexicanum homeobox protein (...    68  1e-09
ref|NG_000212.1|  Drosophila melanogaster zerknullt (zen) on...    68  1e-09
emb|X16849.1|XLHBOX8  Xenopus laevis XlHbox 8 gene for homeo...    68  1e-09
gb|AF417198.1|AF417198  Silurana tropicalis cad2 mRNA, compl...    68  2e-09
gb|AF071234.1|AF071234  Petromyzon marinus homeobox protein ...    68  2e-09
ref|NM_057606.1|  Drosophila melanogaster caudal (cad), tran...    68  2e-09
gb|AF080565.1|AF080565  Anopheles gambiae Antennapedia homeo...    68  2e-09
gb|AY069565.1|  Drosophila melanogaster LD29596 full length ...    68  2e-09
gb|AF052054.1|AF052054  Pristionchus pacificus homeotic prot...    68  2e-09
ref|NG_000352.1|  Drosophila melanogaster caudal (cad) on ch...    67  2e-09
emb|X57158.1|CHCHOXM  Chicken CHOX M mRNA for HOX-4.3-relate...    67  2e-09
gb|AC007467.4|AC007467  Drosophila melanogaster, chromosome ...    67  2e-09
gb|AE003668.3|AE003668  Drosophila melanogaster genomic scaf...    67  2e-09
gb|AC004759.1|AC004759  Drosophila melanogaster DNA sequence...    67  2e-09
emb|X07104.1|XLHBOX4  Xenopus mRNA containing homeobox (XlHb...    67  2e-09
gb|M62870.1|HYDCNOX2A  Hydra vulgaris antennapedia class hom...    67  2e-09
dbj|D16683.1|BMOSHOWA  Silkworm mRNA, homeobox gene caudal (...    67  2e-09
gb|AF417197.1|AF417197  Silurana tropicalis cad1 mRNA, compl...    67  2e-09
gb|S79684.1|S79684S1  Hirudo medicinalis homeobox protein (L...    67  2e-09
emb|AJ277388.1|HVU277388  Hydra vulgaris mRNA for cnox-2 hom...    67  2e-09
gb|BC011082.1|BC011082  Mus musculus, Similar to mesenchyme ...    67  3e-09
ref|NM_005193.1|  Homo sapiens caudal type homeo box transcr...    67  3e-09
gb|AF239666.1|AF239666  Homo sapiens CDX1 homeobox protein (...    67  3e-09
ref|XM_008351.3|  Homo sapiens mesenchyme homeo box 1 (MEOX1...    67  3e-09
gb|U15212.1|HSU15212  Human caudal-type homeobox protein (CD...    67  3e-09
gb|AF031246.1|AF031246  Ambystoma mexicanum homeobox transcr...    67  3e-09
gb|AF112141.1|AF112141  Oryzias latipes homeodomain transcri...    67  3e-09
ref|XM_003791.1|  Homo sapiens caudal type homeo box transcr...    67  3e-09
gb|U51095.1|HSU51095  Human homeobox protein Cdx1 mRNA, comp...    67  3e-09
ref|NM_001804.1|  Homo sapiens caudal type homeo box transcr...    67  3e-09
gb|L20432.1|XELMOX2  Xenopus laevis homeobox protein (MOX2) ...    67  3e-09
ref|NM_004527.1|  Homo sapiens mesenchyme homeo box 1 (MEOX1...    67  3e-09
emb|Z15103.1|MMMOX1G  M.musculus Mox-1 mRNA                        67  3e-09
gb|U10492.1|HSMOX1  Human Mox1 protein (MOX1) mRNA, complete...    67  3e-09
ref|NM_010791.1|  Mus musculus mesenchyme homeobox 1 (Meox1)...    67  3e-09
emb|Z14313.1|HRLOX2MR  H.robusta Lox2 mRNA                         67  4e-09
gb|AF137385.1|  Helobdella triserialis LOX18 homeodomain pro...    67  4e-09
ref|NM_019558.1|  Homo sapiens homeo box D8 (HOXD8), mRNA          67  4e-09
emb|X68324.1|BRHOX34A  B.rerio hox-3.4 gene for homeobox pro...    67  4e-09
ref|NM_007674.1|  Mus musculus caudal type homeo box 4 (Cdx4...    67  4e-09
gb|L08061.1|MUSCDX4A  Mus musculus homeobox protein (cdx 4) ...    67  4e-09
ref|NM_006735.1|  Homo sapiens homeo box A2 (HOXA2), mRNA          67  4e-09
gb|U92575.1|FRU92575  Fugu rubripes homeobox protein HOXB-4 ...    67  4e-09
emb|AJ401088.1|GGA401088  Gallus gallus mRNA for MOX-2 protein     67  4e-09
emb|X17566.1|HMLOX2G  H.medicinalis Lox2 gene (homeobox gene)      67  4e-09
ref|NM_008268.1|  Mus musculus homeo box B5 (Hoxb5), mRNA          66  5e-09
gb|M26283.1|MUSHOX21A  Mouse homeobox (Hox2.1) protein mRNA,...    66  5e-09
gb|U41840.1|EDU41840  Eleutheria dichotoma Cnox3 homeodomain...    66  5e-09
gb|AF071247.1|AF071247  Danio rerio homeobox protein (hoxa5a...    66  5e-09
emb|X66958.1|BRCAD1  B.rerio caudal homeobox mRNA ZF-cad1          66  5e-09
gb|AF151696.1|AF151696  Pristionchus pacificus MAB-5 mRNA, c...    66  5e-09
ref|XM_008561.1|  Homo sapiens homeo box B5 (HOXB5), mRNA          66  5e-09
gb|AF245689.1|AF245689  Acropora millepora homeodomain prote...    66  5e-09
dbj|AK012146.1|AK012146  Mus musculus 10 days embryo whole b...    66  5e-09
dbj|AB046532.1|AB046532  Gallus gallus CdxA mRNA for caudal-...    66  5e-09
dbj|AB026955.1|AB026955  Oryzias latipes mRNA for HOXC4A, co...    66  5e-09
emb|AJ005422.1|TCAJ5422  Tribolium castaneum mRNA for caudal...    66  5e-09
emb|X04706.1|HSHOM4  Human homeobox gene (clone HHO.c13)           66  5e-09
emb|X80668.1|CCCDX1  C.carpio cdx1 mRNA                            66  5e-09
ref|NM_002147.1|  Homo sapiens homeo box B5 (HOXB5), mRNA          66  5e-09
gb|M92299.1|HUMHOX2A  Human homeobox 2.1 protein (HOX2A) mRN...    66  5e-09
gb|AF085283.1|AF085283  Nematostella vectensis hox2 protein ...    66  5e-09
gb|M26679.1|HUMHOX13G  Homo sapiens homeobox protein (HOX-1....    66  5e-09
dbj|AB030175.1|AB030175  Dicyema orientale mRNA for DoxC, co...    66  5e-09
gb|M20705.1|DROANTPRB  D.melanogaster antennapedia gene (Ant...    66  6e-09
gb|M20704.1|DROANTPRA  Drosophila melanogaster antennapedia ...    66  6e-09
ref|NM_079525.1|  Drosophila melanogaster Antennapedia (Antp...    66  6e-09
gb|BC016763.1|BC016763  Homo sapiens, clone MGC:22628 IMAGE:...    66  6e-09
ref|XM_042818.1|  Homo sapiens homeo box D4 (HOXD4), mRNA          66  6e-09
gb|S76300.1|S76300  Hox-B|Hox-2 {clone 17b} [rats, Sprague-D...    66  6e-09
emb|X03062.1|DMCAD  Drosophila caudal (cad) mRNA fragment wi...    66  6e-09
gb|M21070.1|DROCADA2  D.melanogaster caudal gene (cad) encod...    65  8e-09
emb|X16846.1|GDGHOX21  Chicken homeobox gene Ghox 2.1 fragment     65  8e-09
emb|Z35143.1|BFHOX2G  B.floridae Hox-2 gene for homeobox pro...    65  8e-09
ref|NM_010453.1|  Mus musculus homeo box A5 (Hoxa5), mRNA          65  8e-09
emb|X12802.1|BRRZF21  Zebrafish mRNA for homeotic protein ZF-21    65  8e-09
emb|X07381.1|BRHOX21  Zebrafish Hox-2.1 gene homologue (ZF-21)     65  8e-09
emb|X68248.1|BRHOX2A  B.rerio DNA hox-2.1 and hox-2.2 genes        65  8e-09
ref|XM_040801.1|  Homo sapiens homeo box A5 (HOXA5), mRNA          65  8e-09
ref|NM_019102.1|  Homo sapiens homeo box A5 (HOXA5), mRNA          65  8e-09
gb|AF287967.1|AF287967  Homo sapiens homeobox B7 (HOXB7) gen...    65  8e-09
ref|NM_014621.1|  Homo sapiens homeo box D4 (HOXD4), mRNA          65  8e-09
emb|AL645798.2|  Zebrafish DNA sequence from clone XX-227H09...    65  8e-09
emb|X16840.1|MMHX13  Mouse Hox 1.3 mRNA for a homeodomain pr...    65  8e-09
gb|M36604.1|MUSHOX13B  Mouse homeobox 1.3 protein mRNA, comp...    65  8e-09
gb|AF071253.1|AF071253  Danio rerio homeobox protein (hoxb5b...    65  8e-09
emb|X52672.1|GGCHOXA  Chicken Chox-a mRNA for homeodomain pr...    65  8e-09
gb|BC011063.1|BC011063  Mus musculus, Similar to homeo box A...    65  8e-09
gb|K02572.1|HUMHOM2  Human putative homeo box Hu1                  65  8e-09
gb|M28021.1|MUSHOX13A  Mouse homeo domain protein (Hox 1.3) ...    65  8e-09
emb|Y00208.1|MMHOX13  Mouse Hox 1.3 gene for homeo domain pr...    65  8e-09
dbj|AB050887.1|AB050887  Branchiostoma floridae DNA, enhance...    65  8e-09
gb|AF052463.1|AF052463  Branchiostoma floridae homeobox prot...    65  8e-09
emb|X03033.1|MMHOBOX1  Mus musculus gene for homeo-box prote...    65  8e-09
dbj|AB028207.1|AB028207  Branchiostoma floridae AmphiHox2 ge...    65  8e-09
dbj|AB026962.1|AB026962  Oryzias latipes gene for HOXB5B, pa...    65  8e-09
gb|BC013682.1|BC013682  Homo sapiens, clone MGC:9376 IMAGE:3...    65  8e-09
gb|M13373.1|DROANTDFD  D.melanogaster (ANT-C locus) deformed...    65  1e-08
ref|NM_024016.1|  Homo sapiens homeo box B8 (HOXB8), mRNA          65  1e-08
emb|X95414.1|DTHOXA  Girardia tigrina DthoxA gene, partial         65  1e-08
gb|AF036325.1|AF036325  Danio rerio homeobox protein PDX-1 (...    65  1e-08
emb|Z32525.1|DTDNBIPR  D.tigrina mRNA for DNA-binding protein      65  1e-08
gb|AE003673.2|AE003673  Drosophila melanogaster genomic scaf...    65  1e-08
emb|X13721.1|MMHOX24  Murine Hox-2.4 mRNA                          65  1e-08
gb|S70444.1|S70444  Hoxa-4 [mice, testis, Genomic, 3002 nt]        65  1e-08
emb|X66861.1|MMHOX14B  Mus musculus Hox-1.4 gene                   65  1e-08
dbj|AB029759.1|AB029759  Paralichthys olivaceus mRNA for Hox...    65  1e-08
emb|X68045.1|BFHOMEOG  B.floridae gene for amphihox3               65  1e-08
ref|NG_000557.1|  Drosophila melanogaster Deformed (Dfd) on ...    65  1e-08
emb|X05136.1|DMDFD  Drosophila mRNA for Deformed (Dfd) protein     65  1e-08
dbj|D83534.1|D83534  Bombyx mori Dfd mRNA, complete cds            65  1e-08
ref|NM_057853.1|  Drosophila melanogaster Deformed (Dfd), tr...    65  1e-08
ref|NM_057320.1|  Drosophila melanogaster proboscipedia (pb)...    65  1e-08
gb|S67058.1|S67058  Hoxa-4/Hox-1.4=Hoxa-4 [mice, Genomic, 25...    65  1e-08
gb|AF004387.1|AF004387  Helobdella robusta homeodomain prote...    65  1e-08
gb|AF124591.1|AF124591  Cassiopea xamachana Scox-1 homeodoma...    65  1e-08
ref|NM_010836.1|  Mus musculus homeo box, msh-like 3 (Msx3),...    65  1e-08
gb|U62523.1|MMU62523  Mus musculus Msx3 mRNA, complete cds         65  1e-08
gb|M18399.1|MUSHOX24A  Mouse homeo box (Hox2.4) region             65  1e-08
gb|AF104002.1|AF104002  Thermobia domestica abdominal-B prot...    65  1e-08
gb|M37565.1|RATHOMBX1A  Rat homeobox protein R1a gene, compl...    65  1e-08
gb|AF035573.1|AF035573  Oryzias latipes developmental transc...    65  1e-08
dbj|AB024407.1|AB024407  Dugesia japonica mRNA for PLOX3-Dj,...    65  1e-08
emb|X99630.1|HSHOXC11  H.sapiens mRNA for HOXC11 protein, ex...    65  1e-08
gb|AF228509.1|AF228509  Tribolium castaneum prothoraxless mR...    65  1e-08
emb|X64626.1|CVCNOX2  C.viridissima homeobox gene cnox2 mRNA       65  1e-08
gb|AF277988.1|AF277988  Caenorhabditis briggsae LIN-39 mRNA,...    64  2e-08
ref|XM_088266.1|  Homo sapiens mesenchyme homeo box 2 (growt...    64  2e-08
gb|AF187068.1|AF187068  Tribolium castaneum clone pcmxp5 pro...    64  2e-08
gb|L36328.1|HUMGAX  Homo sapiens GAX mRNA, complete cds            64  2e-08
gb|AF452568.1|AF452568  Tribolium castaneum homeodomain tran...    64  2e-08
gb|S82178.1|S82168S2  IPF-1=insulin promoter factor 1 [human...    64  2e-08
emb|Z16406.1|MOX2A  Mus musculus Mox-2A mRNA                       64  2e-08
ref|NM_057322.1|  Drosophila melanogaster proboscipedia (pb)...    64  2e-08
ref|NM_066253.1|  C. elegans homeobox gene lin-39                  64  2e-08
ref|NM_002141.1|  Homo sapiens homeo box A4 (HOXA4), mRNA          64  2e-08
emb|AJ334855.1|HSA334855  Homo sapiens genomic sequence surr...    64  2e-08
gb|U81038.1|TCU81038  Tribolium castaneum transcription fact...    64  2e-08
gb|M74297.1|HUMHOX14  Human homeobox 1.4 protein mRNA, compl...    64  2e-08
emb|X63728.1|DMPROB  D.melanogaster proboscipedia mRNA             64  2e-08
gb|AF363233.1|AF363233  Phascolion strombi homeodomain trans...    64  2e-08
gb|AF268446.1|AF268446  Podocoryne carnea GSX transcription ...    64  2e-08
emb|AL353195.14|AL353195  Human DNA sequence from clone RP11...    64  2e-08
ref|NM_005924.1|  Homo sapiens mesenchyme homeo box 2 (growt...    64  2e-08
emb|X82629.1|HSMOX2  H.sapiens mRNA for Mox-2                      64  2e-08
dbj|D16684.1|BMOAHP  Silkworm mRNA for Antennapedia homologu...    64  2e-08
ref|NM_017149.1|  Rattus norvegicus mesenchyme homeobox 2 (M...    64  2e-08
emb|Z17223.1|RNGAXMR  R.norvegicus mRNA encoding Gax protein       64  2e-08
emb|AJ327718.1|HSA327718  Homo sapiens genomic sequence surr...    64  2e-08
gb|M24085.1|ZEFZF13A  Zebrafish homeobox protein (ZF-13) gen...    64  2e-08
gb|AF071252.1|AF071252  Danio rerio homeobox protein (hoxb4a...    64  2e-08
emb|X92654.2|SGHOX3  S.gregaria mRNA for group 3 homeodomain...    64  2e-08
gb|L19248.1|CELHOMDOMB  Caenorhabditis elegans homeodomain p...    64  2e-08
emb|X63729.1|DMAPROB  D.melanogaster alternative probosciped...    64  2e-08
gb|AF308821.1|AF308821  Branchiostoma floridae Mnx homeodoma...    64  2e-08
gb|BC002076.1|BC002076  Mus musculus, Similar to mesenchyme ...    64  2e-08
gb|AF461700.1|AF461700  Gallus gallus MOX-2 homeobox mRNA, p...    64  2e-08
gb|U82487.1|BFU82487  Branchiostoma floridae engrailed prote...    64  2e-08
gb|L19639.1|CELLIN39A  Caenorhabditis elegans homeobox prote...    64  2e-08
emb|Y16571.1|LSHOX3  Lineus sanguineus Hox-3 gene                  64  2e-08
ref|XM_004917.1|  Homo sapiens homeo box A4 (HOXA4), mRNA          64  2e-08
ref|NM_057323.1|  Drosophila melanogaster proboscipedia (pb)...    64  2e-08
ref|NM_057321.1|  Drosophila melanogaster proboscipedia (pb)...    64  2e-08
gb|BC017021.1|BC017021  Homo sapiens, mesenchyme homeo box 2...    64  2e-08
gb|AF035260.1|HUMPDX3  Homo sapiens insulin promoter factor ...    64  2e-08
ref|NM_023963.1|  Rattus norvegicus CDX2 protein (Cdx2), mRNA      64  2e-08
emb|AJ278466.1|RNO278466  Rattus norvegicus mRNA for CDX2 pr...    64  2e-08
gb|AF275310.1|  Haliotis rufescens Hox5 mRNA, complete cds         64  2e-08
emb|AJ132670.1|DME132670  Drosophila melanogaster buttonless...    64  2e-08
gb|M87803.1|MUSHOX43  Mus musculus homeobox protein (Hox-4.3...    64  2e-08
gb|U51096.1|HSU51096  Human homeobox protein Cdx2 mRNA, comp...    64  2e-08
gb|AC001650.1|AC001650  Drosophila melanogaster DNA sequence...    64  2e-08
ref|NG_000213.1|  Drosophila melanogaster zerknullt-related ...    64  2e-08
emb|X56561.1|MMHOX43  Mouse Hox-4.3 gene, homeo box-containi...    64  2e-08
ref|NG_000110.1|  Drosophila melanogaster proboscipedia (pb)...    64  2e-08
emb|X79494.1|DHFTZGEN  D.hydei fushi tarazu gene                   64  2e-08
ref|XM_039995.3|  Homo sapiens caudal type homeo box transcr...    64  2e-08
ref|NM_001265.1|  Homo sapiens caudal type homeo box transcr...    64  2e-08
emb|Y13709.1|HSCDX2  Homo sapiens caudal-type homeobox gene ...    64  2e-08
gb|AF163858.1|AF163858  Chaetopterus variopedatus homeoprote...    64  2e-08
emb|X68348.1|DSZEN2A  Drosophila sp. zerknuellt (zen) z2 gene      64  2e-08
ref|NM_057446.1|  Drosophila melanogaster zerknullt-related ...    64  2e-08
gb|AY014294.1|AY014293S2  Homo sapiens HOXB8 gene, exon 2 an...    64  2e-08
gb|M26883.1|XELHOXAB1  X.laevis homeobox protein (Hox1B) gen...    64  2e-08
gb|BC014461.1|BC014461  Homo sapiens, Similar to caudal type...    64  2e-08
emb|AJ130766.1|BFL130766  Branchiostoma floridae mRNA for Ms...    64  2e-08
ref|NM_019247.1|  Rattus norvegicus paired-like homeodomain ...    64  2e-08
emb|AJ011005.2|RNO011005  Rattus norvegicus mRNA for Ptx3 pr...    64  2e-08
>ref|NM_008264.1| Mus musculus homeo box A13 (Hoxa13), mRNA
          Length = 1318

 Score =  488 bits (1255), Expect = e-136
 Identities = 240/386 (62%), Positives = 240/386 (62%)
 Frame = +2

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 107 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 286

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 287 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAAAAYSSAPGEAPPSAAAAA 466

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 467 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 646

Query: 181 CARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHH 240
           CARMGPHPN                       GPAAEEFSSRAKEFAFYHQGYAAGPYHH
Sbjct: 647 CARMGPHPNAIKSCAQPASAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHH 826

Query: 241 HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 300
           HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW
Sbjct: 827 HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 1006

Query: 301 KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 360
           KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS
Sbjct: 1007KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 1186

Query: 361 ERQVTIWFQNRRVKEKKVINKLKTTS 386
           ERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1187ERQVTIWFQNRRVKEKKVINKLKTTS 1264
>ref|XM_004921.1| Homo sapiens homeo box A13 (HOXA13), mRNA
          Length = 1167

 Score =  481 bits (1237), Expect = e-134
 Identities = 238/388 (61%), Positives = 239/388 (61%), Gaps = 2/388 (0%)
 Frame = +1

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 180

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 181 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 360

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 361 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 540

Query: 181 CARMGPHPNXXXXXX--XXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
           CARMGPHPN                         GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 541 CARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 720

Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
           HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 721 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 900

Query: 299 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 358
           LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN
Sbjct: 901 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 1080

Query: 359 LSERQVTIWFQNRRVKEKKVINKLKTTS 386
           LSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1081LSERQVTIWFQNRRVKEKKVINKLKTTS 1164
>ref|NM_000522.1| Homo sapiens homeo box A13 (HOXA13), mRNA
          Length = 1167

 Score =  476 bits (1225), Expect = e-132
 Identities = 237/388 (61%), Positives = 238/388 (61%), Gaps = 2/388 (0%)
 Frame = +1

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 180

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 181 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 360

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 361 AAAAAAAAAAAAASSSGGPGPAGPAAAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 540

Query: 181 CARMGPHPNXXXXXXX--XXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
           CARMGP PN                         GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 541 CARMGPPPNAIKSCPQPPSAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 720

Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
           HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 721 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 900

Query: 299 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 358
           LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN
Sbjct: 901 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 1080

Query: 359 LSERQVTIWFQNRRVKEKKVINKLKTTS 386
           LSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1081LSERQVTIWFQNRRVKEKKVINKLKTTS 1164
>gb|AY030050.1| Gallus gallus homeo box A13 (HOXA13) mRNA, complete cds
          Length = 921

 Score =  332 bits (851), Expect = 3e-89
 Identities = 168/218 (77%), Positives = 178/218 (81%)
 Frame = +1

Query: 169 LPYGYFGSGYYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAF 228
           LPYGYFGSGYYPC RM  H                           + EEF+SRAKEFAF
Sbjct: 250 LPYGYFGSGYYPC-RMTHH-----NAIKSCAQPASTFADKYMDTSVSGEEFTSRAKEFAF 411

Query: 229 YHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMY 288
           Y QGYAAGPY   QPVPGYLD+PVVP +GGPGE RH+ L LPM+SYQPWA+ NGWNGQ+Y
Sbjct: 412 Y-QGYAAGPY---QPVPGYLDVPVVPTIGGPGEPRHDSL-LPMDSYQPWAITNGWNGQVY 576

Query: 289 CPKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKD 348
           CPKEQ+QPPHLWKSTLPDVVSHPSDA+SYRRGRKKRVPYTKVQLKELEREYATNKFITKD
Sbjct: 577 CPKEQSQPPHLWKSTLPDVVSHPSDANSYRRGRKKRVPYTKVQLKELEREYATNKFITKD 756

Query: 349 KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
           KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS
Sbjct: 757 KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 870
>gb|U59322.1|MMU59322 Mus musculus transcription factor HOXA13 (Hoxa13) gene, complete
           cds
          Length = 2280

 Score =  330 bits (846), Expect = 1e-88
 Identities = 159/305 (52%), Positives = 159/305 (52%)
 Frame = +1

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 355 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 534

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 535 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAAAAYSSAPGEAPPSAAAAA 714

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 715 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 894

Query: 181 CARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPYHH 240
           CARMGPHPN                       GPAAEEFSSRAKEFAFYHQGYAAGPYHH
Sbjct: 895 CARMGPHPNAIKSCAQPASAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHH 1074

Query: 241 HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 300
           HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW
Sbjct: 1075HQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLW 1254

Query: 301 KSTLP 305
           KSTLP
Sbjct: 1255KSTLP 1269
 Score =  163 bits (412), Expect = 3e-38
 Identities = 82/83 (98%), Positives = 82/83 (98%)
 Frame = +1

Query: 304  LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
            L DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 1978 LTDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 2157

Query: 364  VTIWFQNRRVKEKKVINKLKTTS 386
            VTIWFQNRRVKEKKVINKLKTTS
Sbjct: 2158 VTIWFQNRRVKEKKVINKLKTTS 2226
>gb|AC004080.2| Homo sapiens chromosome 7 clone RP1-170O19, complete sequence
          Length = 129355

 Score =  323 bits (828), Expect = 2e-86
 Identities = 157/307 (51%), Positives = 158/307 (51%), Gaps = 2/307 (0%)
 Frame = -1

Query: 1     MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
             MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 73447 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 73268

Query: 61    XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                     NQCRNLMAH                           
Sbjct: 73267 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 73088

Query: 121   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                             LPYGYFGSGYYP
Sbjct: 73087 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 72908

Query: 181   CARMGPHPNXXXXXX--XXXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
             CARMGPHPN                         GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 72907 CARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 72728

Query: 239   HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
             HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 72727 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 72548

Query: 299   LWKSTLP 305
             LWKSTLP
Sbjct: 72547 LWKSTLP 72527
 Score =  162 bits (410), Expect = 5e-38
 Identities = 82/83 (98%), Positives = 82/83 (98%)
 Frame = -3

Query: 304   LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
             L DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 71819 LLDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 71640

Query: 364   VTIWFQNRRVKEKKVINKLKTTS 386
             VTIWFQNRRVKEKKVINKLKTTS
Sbjct: 71639 VTIWFQNRRVKEKKVINKLKTTS 71571
 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 37/67 (55%), Positives = 52/67 (77%)
 Frame = -3

Query: 312   SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 371
             S ++  +R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNR
Sbjct: 56411 SPSTGGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 56232

Query: 372   RVKEKKV 378
             R+KEKK+
Sbjct: 56231 RMKEKKI 56211
 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = -2

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 37182 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 37003

Query: 378   V 378
             +
Sbjct: 37002 I 37000
 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 33/61 (54%), Positives = 47/61 (76%)
 Frame = -1

Query: 318   RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 45502 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 45323

Query: 378   V 378
             +
Sbjct: 45322 M 45320
 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 39/93 (41%), Positives = 57/93 (60%), Gaps = 2/93 (2%)
 Frame = -2

Query: 296   PPHLWKSTLPDVVSHPSDASSYR--RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 353
             P  LWK+ +    +  S A +     G++ R  YT+ Q  ELE+E+  N+++T+ +R  I
Sbjct: 15513 PGGLWKTGVGG*TADFSIADNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEI 15334

Query: 354   SATTNLSERQVTIWFQNRRVKEKKVINKLKTTS 386
             +    LSERQ+ IWFQNRR+K KK  NKLK+ S
Sbjct: 15333 AHALCLSERQIKIWFQNRRMKWKK-DNKLKSMS 15238
 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 13/97 (13%)
 Frame = -3

Query: 294  TQPPHL--------WKSTLPDVVSHPSDAS---SYRRGRKKR--VPYTKVQLKELEREYA 340
            + PPHL        ++S L  ++   S  S   SY  G  KR    YT+ Q+ ELE+E+ 
Sbjct: 3032 SSPPHLLSPPPFPLFRSLLLGLLFRGSGFSVNPSYNGGEPKRSRTAYTRQQVLELEKEFH 2853

Query: 341  TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             N+++T+ +R  I+ T  LSERQV IWFQNRR+K KK
Sbjct: 2852 FNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 2742
 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 31/63 (49%), Positives = 44/63 (69%)
 Frame = -1

Query: 320   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
             GR+ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK  
Sbjct: 19267 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE- 19091

Query: 380   NKL 382
             NKL
Sbjct: 19090 NKL 19082
 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 26/57 (45%), Positives = 40/57 (69%)
 Frame = -2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377
             ++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK
Sbjct: 28581 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 28411
>gb|U82827.1|HSU82827 Human transcription factor HOXA13 (HOXA13) gene, complete cds
          Length = 2014

 Score =  318 bits (816), Expect = 4e-85
 Identities = 156/307 (50%), Positives = 157/307 (50%), Gaps = 2/307 (0%)
 Frame = +1

Query: 1   MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNME                        
Sbjct: 109 MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPH 288

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXNQCRNLMAHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                   NQCRNLMAH                           
Sbjct: 289 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 468

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPYGYFGSGYYP 180
                                                           LPYGYFGSGYYP
Sbjct: 469 AAAAAAAAAAAAASSSGGPGPAGPAAAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYP 648

Query: 181 CARMGPHPNXXXXXXX--XXXXXXXXXXXXXXXXGPAAEEFSSRAKEFAFYHQGYAAGPY 238
           CARMGP PN                         GPAAEEFSSRAKEFAFYHQGYAAGPY
Sbjct: 649 CARMGPPPNAIKSCPQPPSAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPY 828

Query: 239 HHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPH 298
           HHHQP+PGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ QPPH
Sbjct: 829 HHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 1008

Query: 299 LWKSTLP 305
           LWKSTLP
Sbjct: 1009LWKSTLP 1029
 Score =  162 bits (410), Expect = 5e-38
 Identities = 82/83 (98%), Positives = 82/83 (98%)
 Frame = +2

Query: 304  LPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 363
            L DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 1736 LLDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 1915

Query: 364  VTIWFQNRRVKEKKVINKLKTTS 386
            VTIWFQNRRVKEKKVINKLKTTS
Sbjct: 1916 VTIWFQNRRVKEKKVINKLKTTS 1984
>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence
          Length = 128411

 Score =  236 bits (603), Expect = 2e-60
 Identities = 141/264 (53%), Positives = 161/264 (60%), Gaps = 46/264 (17%)
 Frame = -3

Query: 169    LPYGYFGSG-YYPCARMGPHPNXXXXXXXXXXXXXXXXXXXXXXXGPAA---EEF-SSRA 223
              + YGYFG G YYPC RM  H                           +A   E++ SSRA
Sbjct: 104568 ISYGYFGGGGYYPC-RMSHHHGSGGGVKTCAQSPASGSPYGEKYMDTSASTGEDYTSSRA 104392

Query: 224    KEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALP-NG 282
              KEFA Y   YA+ PY   QPVP YLD+PVV  + GP E RHE L LPMESYQPWA+  +G
Sbjct: 104391 KEFALY-SSYASSPY---QPVPSYLDVPVVQAISGPSEPRHESL-LPMESYQPWAITTSG 104227

Query: 283    WNGQMYCPKEQTQPPHLWKSTLP------------------------------------- 305
              WNGQ+YC KEQ Q  ++WKS++P                                     
Sbjct: 104226 WNGQVYCTKEQQQTGNVWKSSIPGKFILRIAKRKKIHINNKLRRYVHLSLNPFNIYVIMN 104047

Query: 306    --DVVSHP-SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER 362
                + VSH  +D SS+RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA TNLSER
Sbjct: 104046 SIESVSHGGADGSSFRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAQTNLSER 103867

Query: 363    QVTIWFQNRRVKEKKVINKLKTTS 386
              QVTIWFQNRRVKEKKV+NKLK++S
Sbjct: 103866 QVTIWFQNRRVKEKKVVNKLKSSS 103795
 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 36/60 (60%), Positives = 48/60 (80%)
 Frame = -1

Query: 319   RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 378
             R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 95822 RFRKKRCPYTKFQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 95643
 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 36/64 (56%), Positives = 48/64 (74%)
 Frame = -2

Query: 321   RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 380
             RKKR PYTK Q+ ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK  N
Sbjct: 83443 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK-FN 83267

Query: 381   KLKT 384
             K +T
Sbjct: 83266 KNET 83255
 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 33/65 (50%), Positives = 47/65 (71%)
 Frame = -2

Query: 320   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 379
             G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+ T  LSERQ+ IWFQNRR+K KK  
Sbjct: 73786 GKRPRTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK-D 73610

Query: 380   NKLKT 384
             NKLK+
Sbjct: 73609 NKLKS 73595
 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
 Frame = -2

Query: 315   SSYRRG--RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRR 372
             +SY  G  ++ R  YT+ Q  ELE+E+  N+++T+ +R  I+ T  LSERQV IWFQNRR
Sbjct: 65905 ASYSGG