TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(300 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,164,257 sequences; 587,334,133 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_021886.1| Mus musculus centromere autoantigen H (Cen... 401 e-110
dbj|AB017634.1|AB017634 Mus musculus mRNA for ENP, complete... 401 e-110
dbj|AK011264.1|AK011264 Mus musculus 10 days embryo whole b... 312 e-106
dbj|AK011738.1|AK011738 Mus musculus 10 days embryo whole b... 310 e-105
dbj|AK006208.1|AK006208 Mus musculus adult male testis cDNA... 307 e-104
dbj|AK012907.1|AK012907 Mus musculus 10, 11 days embryo who... 259 8e-85
ref|NM_022909.1| Homo sapiens centromere protein H (CENPH),... 250 9e-65
dbj|AB035124.1|AB035124 Homo sapiens mRNA for kinetochore p... 250 9e-65
gb|BC015355.1|BC015355 Homo sapiens, kinetochore protein CE... 250 9e-65
gb|BC012024.1|BC012024 Homo sapiens, kinetochore protein CE... 250 9e-65
dbj|AK010533.1|AK010533 Mus musculus ES cells cDNA, RIKEN f... 238 5e-61
gb|L26956.1|HAMFAR Mesocricetus auratus stearyl-CoA desatur... 107 9e-22
dbj|AB055783.1|AB055783 Gallus gallus mRNA for centromere p... 95 8e-18
gb|AC022107.8| Homo sapiens chromosome 5 clone CTC-351M12, ... 81 1e-13
dbj|AK011739.1|AK011739 Mus musculus 10 days embryo whole b... 78 1e-12
gb|AC012358.9| Homo sapiens BAC clone RP11-321E13 from 2, c... 44 0.017
ref|XM_048095.4| Homo sapiens hypothetical protein (LOC5558... 44 0.017
ref|NM_017571.1| Homo sapiens hypothetical protein (LOC5558... 42 0.082
gb|AF112218.1|AF112218 Homo sapiens unknown mRNA 42 0.082
gb|U51472.2|FCU51472 Felis catus superfast myosin heavy cha... 39 0.41
gb|AF031886.1|AF031886 Plasmodium yoelii yoelii erythrocyte... 39 0.53
gb|U39701.1|U39701 Mycoplasma genitalium section 23 of 51 o... 38 0.91
ref|NM_106461.1| Arabidopsis thaliana chromosome 1 CHR1v12... 38 1.2
gb|AC012680.5|AC012680 Arabidopsis thaliana chromosome 1 BA... 38 1.2
gb|U25190.1|PBU25190 Plasmodium berghei HSP70 family member... 37 1.5
ref|NM_031683.1| Rattus norvegicus SMC (segregation of mito... 37 2.6
emb|AJ005113.1|RNAJ5113 Rattus norvegicus mRNA for SMC-prot... 37 2.6
dbj|D80000.1|D80000 Human mRNA for KIAA0178 gene, partial cds 37 2.6
ref|XM_050403.1| Homo sapiens SMC1 structural maintenance o... 37 2.6
ref|NM_019710.1| Mus musculus SMC (structural maintenance o... 37 2.6
ref|NM_006306.1| Homo sapiens SMC1 structural maintenance o... 37 2.6
gb|AF047600.1|AF047600 Mus musculus chromosome segregation ... 37 2.6
gb|S78271.1|S78271 SB1.8/DXS423E=mitosis-specific chromosom... 37 2.6
gb|AE000711.1|AE000711 Aquifex aeolicus section 43 of 109 o... 37 2.6
gb|AF072712.1|AF072712 Bos taurus SMC1 protein (SMC1) mRNA,... 37 2.6
emb|AL110477.1|CEY113G7B Caenorhabditis elegans cosmid Y113... 36 3.5
ref|NM_075500.1| Caenorhabditis elegans 36 3.5
ref|NM_060159.1| Caenorhabditis elegans 36 3.5
ref|NM_012337.1| Homo sapiens nasopharyngeal epithelium spe... 36 3.5
gb|AF094758.1|AF094758 Homo sapiens nasopharyngeal epitheli... 36 3.5
emb|X69121.1|PFGRPAA P.falciparum Pfgrp mRNA for heat shock... 36 3.5
emb|Y12234.1|EFAS48C E.faecalis plasmid DNA containing gene... 36 3.5
gb|L07649.1|YSCASF2A Saccharomyces cerevisiae anti-silencin... 36 4.5
emb|AJ276470.1|TTH276470 Tetrahymena thermophila mRNA for t... 36 4.5
emb|X83276.1|SCDNAIV S.cerevisiae DNA for ORFs from chromos... 36 4.5
emb|Z74245.1|SCYDL197C S.cerevisiae chromosome IV reading f... 36 4.5
emb|X99000.1|CS39KBCIV S.cerevisiae 39kb DNA segment of chr... 36 4.5
gb|AF139990.1|AF139990 Danio rerio mitotic kinesin-like pro... 35 5.9
dbj|D85752.1|D85752 Enterococcus faecalis plasmid pPD1 bacA... 35 5.9
ref|XM_051949.5| Homo sapiens KIAA0456 protein (SRGAP2), mRNA 35 7.7
dbj|AB007925.1|AB007925 Homo sapiens mRNA for KIAA0456 prot... 35 7.7
ref|XM_059095.2| Homo sapiens similar to KIAA0456 protein (... 35 7.7
>ref|NM_021886.1| Mus musculus centromere autoantigen H (Cenph), mRNA
Length = 1239
Score = 401 bits (1030), Expect = e-110
Identities = 215/248 (86%), Positives = 217/248 (86%)
Frame = +2
Query: 1 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE 60
MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE
Sbjct: 98 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE 277
Query: 61 KTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL 120
KTPEQIMQEKQ DVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL
Sbjct: 278 KTPEQIMQEKQIEVKIEELENEIEDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL 457
Query: 121 TDDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDV 180
TDDMKHILKLQKLIM DVRKKRLQLKQASRSKLLEIQIEKNKQKEDV
Sbjct: 458 TDDMKHILKLQKLIMKSQEESSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDV 637
Query: 181 DKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT 240
DKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT
Sbjct: 638 DKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT 817
Query: 241 LKMENSEM 248
L E+ +
Sbjct: 818 L*EESRSL 841
>dbj|AB017634.1|AB017634 Mus musculus mRNA for ENP, complete cds
Length = 1239
Score = 401 bits (1030), Expect = e-110
Identities = 215/248 (86%), Positives = 217/248 (86%)
Frame = +2
Query: 1 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE 60
MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE
Sbjct: 98 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE 277
Query: 61 KTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL 120
KTPEQIMQEKQ DVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL
Sbjct: 278 KTPEQIMQEKQIEVKIEELENEIEDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL 457
Query: 121 TDDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDV 180
TDDMKHILKLQKLIM DVRKKRLQLKQASRSKLLEIQIEKNKQKEDV
Sbjct: 458 TDDMKHILKLQKLIMKSQEESSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDV 637
Query: 181 DKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT 240
DKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT
Sbjct: 638 DKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT 817
Query: 241 LKMENSEM 248
L E+ +
Sbjct: 818 L*EESRSL 841
>dbj|AK011264.1|AK011264 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2610001L24:centromere
autoantigen H, full insert sequence
Length = 1210
Score = 312 bits (800), Expect(2) = e-106
Identities = 168/195 (86%), Positives = 168/195 (86%)
Frame = +2
Query: 1 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE 60
MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE
Sbjct: 83 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE 262
Query: 61 KTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL 120
KTPEQIMQEKQ DVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL
Sbjct: 263 KTPEQIMQEKQIEVKIEELENEIEDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL 442
Query: 121 TDDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDV 180
TDDMKHILKLQKLIM DVRKKRLQLKQASRSKLLEIQIEKNKQKEDV
Sbjct: 443 TDDMKHILKLQKLIMKSQEESSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDV 622
Query: 181 DKMENSEMIKTMKKK 195
DKMENSEMIKTMKKK
Sbjct: 623 DKMENSEMIKTMKKK 667
Score = 99.0 bits (245), Expect(2) = e-106
Identities = 50/56 (89%), Positives = 52/56 (92%)
Frame = +3
Query: 193 KKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEM 248
KKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTL E+ +
Sbjct: 660 KKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTL*EESRSL 827
Score = 97.1 bits (240), Expect = 2e-18
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +3
Query: 253 KKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT 300
KKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT
Sbjct: 660 KKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT 803
>dbj|AK011738.1|AK011738 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2610042E10:centromere
autoantigen H, full insert sequence
Length = 1208
Score = 310 bits (795), Expect(2) = e-105
Identities = 167/194 (86%), Positives = 167/194 (86%)
Frame = +2
Query: 1 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE 60
MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE
Sbjct: 83 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEE 262
Query: 61 KTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL 120
KTPEQIMQEKQ DVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL
Sbjct: 263 KTPEQIMQEKQIEVKIEELENEIEDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVL 442
Query: 121 TDDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDV 180
TDDMKHILKLQKLIM DVRKKRLQLKQASRSKLLEIQIEKNKQKEDV
Sbjct: 443 TDDMKHILKLQKLIMKSQEESSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDV 622
Query: 181 DKMENSEMIKTMKK 194
DKMENSEMIKTMKK
Sbjct: 623 DKMENSEMIKTMKK 664
Score = 98.2 bits (243), Expect(2) = e-105
Identities = 50/59 (84%), Positives = 53/59 (89%)
Frame = +1
Query: 190 KTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEM 248
K +KKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTL E+ +
Sbjct: 649 KDHEKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTL*EESRSL 825
Score = 96.3 bits (238), Expect = 3e-18
Identities = 48/51 (94%), Positives = 49/51 (95%)
Frame = +1
Query: 250 KTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT 300
K +KKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT
Sbjct: 649 KDHEKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNT 801
>dbj|AK006208.1|AK006208 Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:1700021I11:centromere autoantigen H, full
insert sequence
Length = 1223
Score = 307 bits (787), Expect(2) = e-104
Identities = 166/204 (81%), Positives = 168/204 (81%)
Frame = +1
Query: 45 KQQLLEYKSMIDTNEEKTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSV 104
K L KSMIDTNEEKTPEQIMQEKQ DVKSNIEMKSLALSRMKLSV
Sbjct: 214 KTAALRIKSMIDTNEEKTPEQIMQEKQIEVKIEELENEIEDVKSNIEMKSLALSRMKLSV 393
Query: 105 ALRDNMENMGPENCVLTDDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRS 164
ALRDNMENMGPENCVLTDDMKHILKLQKLIM DVRKKRLQLKQASRS
Sbjct: 394 ALRDNMENMGPENCVLTDDMKHILKLQKLIMKSQEESSELEKKLLDVRKKRLQLKQASRS 573
Query: 165 KLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAED 224
KLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAED
Sbjct: 574 KLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAED 753
Query: 225 PALRETVLQLEKDLNTLKMENSEM 248
PALRETVLQLEKDLNTL E+ +
Sbjct: 754 PALRETVLQLEKDLNTL*EESRSL 825
Score = 97.4 bits (241), Expect(2) = e-104
Identities = 50/50 (100%), Positives = 50/50 (100%)
Frame = +2
Query: 1 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLE 50
MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLE
Sbjct: 83 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLE 232
>dbj|AK012907.1|AK012907 Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2810046K12:ENP, full insert
sequence
Length = 1170
Score = 259 bits (661), Expect(2) = 8e-85
Identities = 137/158 (86%), Positives = 140/158 (87%)
Frame = +1
Query: 91 EMKSLALSRMKLSVALRDNMENMGPENCVLTDDMKHILKLQKLIMXXXXXXXXXXXXXXD 150
EMKSLALSRMKLSVAL+DNMENMGPENCVLTDDMKHILKLQKLIM D
Sbjct: 313 EMKSLALSRMKLSVALQDNMENMGPENCVLTDDMKHILKLQKLIMKSQEESSELEKKLLD 492
Query: 151 VRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTF 210
VRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTF
Sbjct: 493 VRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTF 672
Query: 211 QGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEM 248
QGLILASKTNWAEDPALRETVLQLEKDLNTL E+ +
Sbjct: 673 QGLILASKTNWAEDPALRETVLQLEKDLNTL*EESRSL 786
Score = 80.5 bits (197), Expect(2) = 8e-85
Identities = 41/70 (58%), Positives = 54/70 (76%)
Frame = +3
Query: 2 EEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEK 61
E +PR R+ AG EACEEKRGL+ AAEER +DR LLLRL+A+T QQL EYK +I+T ++K
Sbjct: 51 EGRPRGRTMAGDEACEEKRGLTAAAEERFKDRFKLLLRLKAKTXQQL*EYKILINTMKKK 230
Query: 62 TPEQIMQEKQ 71
+I ++KQ
Sbjct: 231 LQNRICKKKQ 260
>ref|NM_022909.1| Homo sapiens centromere protein H (CENPH), mRNA
Length = 744
Score = 250 bits (639), Expect = 9e-65
Identities = 141/249 (56%), Positives = 172/249 (68%), Gaps = 8/249 (3%)
Frame = +1
Query: 1 MEEQPR-----ERSEAGAEACEEKRGLSQAAEERI---EDRISLLLRLRAQTKQQLLEYK 52
MEEQP+ E +++G E G Q A + EDR++LLLRLRAQTKQQLLEYK
Sbjct: 1 MEEQPQMQDADEPADSGGEG--RAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYK 174
Query: 53 SMIDTNEEKTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMEN 112
SM+D +EEKTPEQIMQEKQ +VK E+K LAL RM+LS AL+ N+E
Sbjct: 175 SMVDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEK 354
Query: 113 MGPENCVLTDDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIE 172
+ ++ VL D+MKH+L+L KLIM D+RKKRLQLKQAS SKLLEIQ E
Sbjct: 355 ISRQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTE 534
Query: 173 KNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVL 232
KNKQK D+D MENSE IK +++ LQ EIKITTV+QH FQ LIL SK NWAEDPAL+E VL
Sbjct: 535 KNKQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVL 714
Query: 233 QLEKDLNTL 241
QLEK+++ +
Sbjct: 715 QLEKNVDMM 741
>dbj|AB035124.1|AB035124 Homo sapiens mRNA for kinetochore protein CENP-H, complete cds
Length = 744
Score = 250 bits (639), Expect = 9e-65
Identities = 141/249 (56%), Positives = 172/249 (68%), Gaps = 8/249 (3%)
Frame = +1
Query: 1 MEEQPR-----ERSEAGAEACEEKRGLSQAAEERI---EDRISLLLRLRAQTKQQLLEYK 52
MEEQP+ E +++G E G Q A + EDR++LLLRLRAQTKQQLLEYK
Sbjct: 1 MEEQPQMQDADEPADSGGEG--RAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYK 174
Query: 53 SMIDTNEEKTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMEN 112
SM+D +EEKTPEQIMQEKQ +VK E+K LAL RM+LS AL+ N+E
Sbjct: 175 SMVDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEK 354
Query: 113 MGPENCVLTDDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIE 172
+ ++ VL D+MKH+L+L KLIM D+RKKRLQLKQAS SKLLEIQ E
Sbjct: 355 ISRQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTE 534
Query: 173 KNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVL 232
KNKQK D+D MENSE IK +++ LQ EIKITTV+QH FQ LIL SK NWAEDPAL+E VL
Sbjct: 535 KNKQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVL 714
Query: 233 QLEKDLNTL 241
QLEK+++ +
Sbjct: 715 QLEKNVDMM 741
>gb|BC015355.1|BC015355 Homo sapiens, kinetochore protein CENP-H, clone MGC:21458
IMAGE:3451767, mRNA, complete cds
Length = 1387
Score = 250 bits (639), Expect = 9e-65
Identities = 141/249 (56%), Positives = 172/249 (68%), Gaps = 8/249 (3%)
Frame = +1
Query: 1 MEEQPR-----ERSEAGAEACEEKRGLSQAAEERI---EDRISLLLRLRAQTKQQLLEYK 52
MEEQP+ E +++G E G Q A + EDR++LLLRLRAQTKQQLLEYK
Sbjct: 70 MEEQPQMQDADEPADSGGEG--RAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYK 243
Query: 53 SMIDTNEEKTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMEN 112
SM+D +EEKTPEQIMQEKQ +VK E+K LAL RM+LS AL+ N+E
Sbjct: 244 SMVDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEK 423
Query: 113 MGPENCVLTDDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIE 172
+ ++ VL D+MKH+L+L KLIM D+RKKRLQLKQAS SKLLEIQ E
Sbjct: 424 ISRQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTE 603
Query: 173 KNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVL 232
KNKQK D+D MENSE IK +++ LQ EIKITTV+QH FQ LIL SK NWAEDPAL+E VL
Sbjct: 604 KNKQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVL 783
Query: 233 QLEKDLNTL 241
QLEK+++ +
Sbjct: 784 QLEKNVDMM 810
>gb|BC012024.1|BC012024 Homo sapiens, kinetochore protein CENP-H, clone MGC:21431
IMAGE:4510607, mRNA, complete cds
Length = 1379
Score = 250 bits (639), Expect = 9e-65
Identities = 141/249 (56%), Positives = 172/249 (68%), Gaps = 8/249 (3%)
Frame = +1
Query: 1 MEEQPR-----ERSEAGAEACEEKRGLSQAAEERI---EDRISLLLRLRAQTKQQLLEYK 52
MEEQP+ E +++G E G Q A + EDR++LLLRLRAQTKQQLLEYK
Sbjct: 64 MEEQPQMQDADEPADSGGEG--RAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYK 237
Query: 53 SMIDTNEEKTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMEN 112
SM+D +EEKTPEQIMQEKQ +VK E+K LAL RM+LS AL+ N+E
Sbjct: 238 SMVDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEK 417
Query: 113 MGPENCVLTDDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIE 172
+ ++ VL D+MKH+L+L KLIM D+RKKRLQLKQAS SKLLEIQ E
Sbjct: 418 ISRQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTE 597
Query: 173 KNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVL 232
KNKQK D+D MENSE IK +++ LQ EIKITTV+QH FQ LIL SK NWAEDPAL+E VL
Sbjct: 598 KNKQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVL 777
Query: 233 QLEKDLNTL 241
QLEK+++ +
Sbjct: 778 QLEKNVDMM 804
>dbj|AK010533.1|AK010533 Mus musculus ES cells cDNA, RIKEN full-length enriched library,
clone:2410018A12:ENP, full insert sequence
Length = 1286
Score = 238 bits (607), Expect = 5e-61
Identities = 127/160 (79%), Positives = 133/160 (82%), Gaps = 1/160 (0%)
Frame = +1
Query: 90 IEMKSLALSRM-KLSVALRDNMENMGPENCVLTDDMKHILKLQKLIMXXXXXXXXXXXXX 148
+ K LAL ++ ALRDNMENMGPENCVLTDDMKHILKLQKLIM
Sbjct: 424 VNAKGLALKQV*NFESALRDNMENMGPENCVLTDDMKHILKLQKLIMKSQEESSELEKKL 603
Query: 149 XDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQH 208
DVRKK+LQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQH
Sbjct: 604 LDVRKKKLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQH 783
Query: 209 TFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEM 248
TFQGLILASKTNWAEDPALRETVLQLEKDLNTL E+ +
Sbjct: 784 TFQGLILASKTNWAEDPALRETVLQLEKDLNTL*EESRSL 903
Score = 77.8 bits (190), Expect = 1e-12
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +3
Query: 1 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLR 39
MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLR
Sbjct: 93 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLR 209
>gb|L26956.1|HAMFAR Mesocricetus auratus stearyl-CoA desaturase (FAR-17c) mRNA, complete
cds
Length = 2805
Score = 107 bits (268), Expect = 9e-22
Identities = 54/79 (68%), Positives = 63/79 (79%)
Frame = +1
Query: 163 RSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWA 222
++ L IQ EK+KQK+D+D MENSE+IKTM+KK KITTV+QH FQGLIL SKTNWA
Sbjct: 1336 KANLSFIQTEKSKQKKDLDNMENSEVIKTMQKKAADGDKITTVIQHVFQGLILGSKTNWA 1515
Query: 223 EDPALRETVLQLEKDLNTL 241
ED LRE VLQLEKDL T+
Sbjct: 1516 EDSGLREIVLQLEKDLTTI 1572
Score = 89.4 bits (220), Expect = 3e-16
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 235 EKDLNTLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQL 294
+KDL+ MENSE+IKTM+KK KITTV+QH FQGLIL SKTNWAED LRE VLQL
Sbjct: 1378 KKDLDN--MENSEVIKTMQKKAADGDKITTVIQHVFQGLILGSKTNWAEDSGLREIVLQL 1551
Query: 295 EKDLNT 300
EKDL T
Sbjct: 1552 EKDLTT 1569
>dbj|AB055783.1|AB055783 Gallus gallus mRNA for centromere protein H, complete cds
Length = 1482
Score = 94.7 bits (234), Expect = 8e-18
Identities = 56/154 (36%), Positives = 89/154 (57%)
Frame = +3
Query: 86 VKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLTDDMKHILKLQKLIMXXXXXXXXXX 145
VKS E K+L + R++L ALR ++ ++ + M+ I+KL I+
Sbjct: 273 VKSAFESKALVIKRIQLMDALRKRVKENDGCARLIVETMRDIIKLNWEIIQAHQQARVIR 452
Query: 146 XXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTV 205
D+R+KR LKQA K L I K+KE V +M+ +E +K + + +Q E K+TT+
Sbjct: 453 ENLNDIRRKRYFLKQAEGEKALRIFTTVRKKKEVV-RMKIAEKLKFIHRNVQYERKVTTL 629
Query: 206 VQHTFQGLILASKTNWAEDPALRETVLQLEKDLN 239
VQ+ Q +I+ + NWA+DP+LR +LQLEKD++
Sbjct: 630 VQNILQNIIVGCQINWAKDPSLRAIILQLEKDIS 731
Score = 60.1 bits (144), Expect = 2e-07
Identities = 26/66 (39%), Positives = 46/66 (69%)
Frame = +3
Query: 234 LEKDLNTLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQ 293
+ K ++M+ +E +K + + +Q E K+TT+VQ+ Q +I+ + NWA+DP+LR +LQ
Sbjct: 534 VRKKKEVVRMKIAEKLKFIHRNVQYERKVTTLVQNILQNIIVGCQINWAKDPSLRAIILQ 713
Query: 294 LEKDLN 299
LEKD++
Sbjct: 714 LEKDIS 731
>gb|AC022107.8| Homo sapiens chromosome 5 clone CTC-351M12, complete sequence
Length = 122276
Score = 80.9 bits (198), Expect = 1e-13
Identities = 40/55 (72%), Positives = 46/55 (82%)
Frame = +1
Query: 157 QLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQ 211
+LKQAS SKLLEIQ EKNKQK D+D MENSE IK +++ LQ EIKITTV+QH FQ
Sbjct: 113653 ELKQASESKLLEIQTEKNKQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQ 113817
Score = 47.4 bits (111), Expect = 0.001
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +1
Query: 209 TFQGLILASKTNWAEDPALRETVLQLEKDLNTL 241
+ Q LIL SK NWAEDPAL+E VLQLEK+++ +
Sbjct: 115156 SLQNLILGSKVNWAEDPALKEIVLQLEKNVDMM 115254
Score = 47.0 bits (110), Expect = 0.002
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +1
Query: 269 TFQGLILASKTNWAEDPALRETVLQLEKDLN 299
+ Q LIL SK NWAEDPAL+E VLQLEK+++
Sbjct: 115156 SLQNLILGSKVNWAEDPALKEIVLQLEKNVD 115248
Score = 45.4 bits (106), Expect = 0.006
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +1
Query: 226 ALRETVLQLEKDLNTLK-----MENSEMIKTMKKKLQTEIKITTVVQHTFQ 271
A +L+++ + N K MENSE IK +++ LQ EIKITTV+QH FQ
Sbjct: 113665 ASESKLLEIQTEKNKQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQ 113817
Score = 38.9 bits (89), Expect = 0.53
Identities = 17/23 (73%), Positives = 21/23 (90%)
Frame = +3
Query: 37 LLRLRAQTKQQLLEYKSMIDTNE 59
+ RLRAQTKQQLLEYKSM+D ++
Sbjct: 97245 VFRLRAQTKQQLLEYKSMVDASK 97313
>dbj|AK011739.1|AK011739 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2610042E16:ENP, full insert
sequence
Length = 902
Score = 77.8 bits (190), Expect = 1e-12
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +3
Query: 1 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLR 39
MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLR
Sbjct: 75 MEEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLR 191
>gb|AC012358.9| Homo sapiens BAC clone RP11-321E13 from 2, complete sequence
Length = 162151
Score = 43.9 bits (102), Expect = 0.017
Identities = 66/296 (22%), Positives = 125/296 (41%), Gaps = 4/296 (1%)
Frame = -3
Query: 6 RERSEAGAEA----CEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEK 61
R+RS+ AEA E++ + + + ++S + + Q K++L YK + EE
Sbjct: 139517 RQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKGERAEEL 139338
Query: 62 TPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLT 121
E EK+ ++ +L ++ K+ ++N E + EN L
Sbjct: 139337 ENELHHLEKENELLQK-------------KITNLKITCEKIEALEQENSE-LERENRKLK 139200
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVD 181
+ L + ++R+ LK AS K+ ++Q+E NK+ E
Sbjct: 139199 KTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESLKCASM-KMAQLQLE-NKELES-- 139032
Query: 182 KMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTL 241
E +K + L+ K T ++ ++QGL + ++ + + QLE +L L
Sbjct: 139031 ---EKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDL 138861
Query: 242 KMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKD 297
+MEN +T++K L+ E+KI++ + E+ +L + QLEKD
Sbjct: 138860 EMEN----QTLQKNLE-ELKISSKRLEQLE----------KENKSLEQETSQLEKD 138738
>ref|XM_048095.4| Homo sapiens hypothetical protein (LOC55580), mRNA
Length = 3091
Score = 43.9 bits (102), Expect = 0.017
Identities = 66/296 (22%), Positives = 125/296 (41%), Gaps = 4/296 (1%)
Frame = +1
Query: 6 RERSEAGAEA----CEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEK 61
R+RS+ AEA E++ + + + ++S + + Q K++L YK + EE
Sbjct: 2245 RQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKGERAEEL 2424
Query: 62 TPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLT 121
E EK+ ++ +L ++ K+ ++N E + EN L
Sbjct: 2425 ENELHHLEKENELLQK-------------KITNLKITCEKIEALEQENSE-LERENRKLK 2562
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVD 181
+ L + ++R+ LK AS K+ ++Q+E NK+ E
Sbjct: 2563 KTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESLKCASM-KMAQLQLE-NKELES-- 2730
Query: 182 KMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTL 241
E +K + L+ K T ++ ++QGL + ++ + + QLE +L L
Sbjct: 2731 ---EKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDL 2901
Query: 242 KMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKD 297
+MEN +T++K L+ E+KI++ + E+ +L + QLEKD
Sbjct: 2902 EMEN----QTLQKNLE-ELKISSKRLEQLE----------KENKSLEQETSQLEKD 3024
>ref|NM_017571.1| Homo sapiens hypothetical protein (LOC55580), mRNA
Length = 3109
Score = 41.6 bits (96), Expect = 0.082
Identities = 59/263 (22%), Positives = 114/263 (42%), Gaps = 4/263 (1%)
Frame = +3
Query: 6 RERSEAGAEA----CEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEK 61
R+RS+ AEA E++ + + + ++S + + Q K++L YK + EE
Sbjct: 2244 RQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKGERAEEL 2423
Query: 62 TPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLT 121
E EK+ ++ +L ++ K+ ++N E + EN L
Sbjct: 2424 ENELHHLEKENELLQK-------------KITNLKITCEKIEALEQENSE-LERENRKLK 2561
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVD 181
+ L + ++R+ LK AS K+ ++Q+E NK+ E
Sbjct: 2562 KTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESLKCASM-KMAQLQLE-NKELES-- 2729
Query: 182 KMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTL 241
E +K + L+ K T ++ ++QGL + ++ + + QLE +L L
Sbjct: 2730 ---EKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDL 2900
Query: 242 KMENSEMIKTMKKKLQTEIKITT 264
+MEN +T++K L+ E+KI++
Sbjct: 2901 EMEN----QTLQKNLE-ELKISS 2954
>gb|AF112218.1|AF112218 Homo sapiens unknown mRNA
Length = 3109
Score = 41.6 bits (96), Expect = 0.082
Identities = 59/263 (22%), Positives = 114/263 (42%), Gaps = 4/263 (1%)
Frame = +3
Query: 6 RERSEAGAEA----CEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEK 61
R+RS+ AEA E++ + + + ++S + + Q K++L YK + EE
Sbjct: 2244 RQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKGERAEEL 2423
Query: 62 TPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLT 121
E EK+ ++ +L ++ K+ ++N E + EN L
Sbjct: 2424 ENELHHLEKENELLQK-------------KITNLKITCEKIEALEQENSE-LERENRKLK 2561
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVD 181
+ L + ++R+ LK AS K+ ++Q+E NK+ E
Sbjct: 2562 KTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESLKCASM-KMAQLQLE-NKELES-- 2729
Query: 182 KMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTL 241
E +K + L+ K T ++ ++QGL + ++ + + QLE +L L
Sbjct: 2730 ---EKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDL 2900
Query: 242 KMENSEMIKTMKKKLQTEIKITT 264
+MEN +T++K L+ E+KI++
Sbjct: 2901 EMEN----QTLQKNLE-ELKISS 2954
>gb|U51472.2|FCU51472 Felis catus superfast myosin heavy chain (sMyHC) mRNA, complete cds
Length = 6302
Score = 39.3 bits (90), Expect = 0.41
Identities = 43/182 (23%), Positives = 84/182 (45%), Gaps = 28/182 (15%)
Frame = +2
Query: 108 DNMENMGPENCVLTDDMKHIL-----------KLQKLIMXXXXXXXXXXXXXXDVRKKRL 156
+++E++ EN L +++K ++ +LQKL ++ K+ L
Sbjct: 4496 EHLESVKKENKTLQEEIKELIDQLGEGGRSVHELQKL------------KKKLEIEKEEL 4639
Query: 157 QLK--------QASRSKLLEIQIEKNKQKEDVDKM--ENSEMIKTMKKKLQTEIKITTVV 206
Q+ + SK++ IQ+E + K D+D+ E E + +K Q I+
Sbjct: 4640 QVALEEAESSLEVEESKVIRIQLELAQVKADIDRRIHEKEEEFEATRKNHQRAIE----- 4804
Query: 207 QHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKME-------NSEMIKTMKKKLQTE 259
+ Q + A AE L++ ++E DLN ++++ NSE++KT+ K+L+ +
Sbjct: 4805 --SLQASLEAEAKGRAEALRLKK---KMETDLNEMEIQLDHANKNNSELVKTL-KRLEQQ 4966
Query: 260 IK 261
IK
Sbjct: 4967 IK 4972
>gb|AF031886.1|AF031886 Plasmodium yoelii yoelii erythrocyte binding protein (maebl) gene,
complete cds
Length = 7950
Score = 38.9 bits (89), Expect = 0.53
Identities = 44/212 (20%), Positives = 88/212 (40%), Gaps = 13/212 (6%)
Frame = +1
Query: 3 EQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEKT 62
E+ R+R EA +A EE+R + +AA++ E+R + +A+ +++ +E + EE+
Sbjct: 5539 EEERKRIEAEKKA-EEERKIIEAAKKAEEERKRIEEAKKAEEERKKIEAAKKAE--EERK 5709
Query: 63 PEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLTD 122
+ +++ + + K E AL R K S A + +E
Sbjct: 5710 KAEAVKKAEEAKKKAEAAKKAEERKKKAEAAKKALERKKKSEAAKKALERKKKAEAAKKA 5889
Query: 123 DMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQL-------------KQASRSKLLEI 169
+ K K + + KKRL+L K++ R K +
Sbjct: 5890 EEKK--KAEAAKKAEEEKKKAEAAKKAEEEKKRLKLQRKPERKKKRRSGKESRRRKKKRL 6063
Query: 170 QIEKNKQKEDVDKMENSEMIKTMKKKLQTEIK 201
++++ KQK+ +++ K KK+L+ + K
Sbjct: 6064 KLQR-KQKKKKKRLKRQRKQKKKKKRLKRQRK 6156
>gb|U39701.1|U39701 Mycoplasma genitalium section 23 of 51 of the complete genome
Length = 15191
Score = 38.1 bits (87), Expect = 0.91
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +1
Query: 167 LEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAED-P 225
L+ + EKN+ K DVDK+EN +++K + K L+ E+K +GL N AED P
Sbjct: 8371 LQSEYEKNRSKTDVDKIEN-QLLKEI-KSLEDELK-------NLKGL-----KNQAEDNP 8508
Query: 226 ALRETVLQLEKDLNTLKME 244
L + + LE DLN L E
Sbjct: 8509 ELDKKINHLEVDLNRLVNE 8565
>ref|NM_106461.1| Arabidopsis thaliana chromosome 1 CHR1v12152001 genomic sequence
Length = 1029
Score = 37.7 bits (86), Expect = 1.2
Identities = 27/102 (26%), Positives = 44/102 (42%), Gaps = 2/102 (1%)
Frame = +1
Query: 2 EEQPRERSEAGAEACEEKRGLSQAAEERI--EDRISLLLRLRAQTKQQLLEYKSMIDTNE 59
EEQ + + C+EKR L E LL+R R+ + LE + + T +
Sbjct: 622 EEQNNKDDDKNNNKCDEKRDLEDTETEPAVPPPNALLLMRCRSAPAKSWLEERMKVKTEQ 801
Query: 60 EKTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMK 101
EK EQ +EK+ D++S +E + + L M+
Sbjct: 802 EKREEQ-KEEKETEDQETSMKTKKKDLRSLMEEEKMELVLMR 924
>gb|AC012680.5|AC012680 Arabidopsis thaliana chromosome 1 BAC T11I11 genomic sequence, complete
sequence
Length = 69506
Score = 37.7 bits (86), Expect = 1.2
Identities = 27/102 (26%), Positives = 44/102 (42%), Gaps = 2/102 (1%)
Frame = +3
Query: 2 EEQPRERSEAGAEACEEKRGLSQAAEERI--EDRISLLLRLRAQTKQQLLEYKSMIDTNE 59
EEQ + + C+EKR L E LL+R R+ + LE + + T +
Sbjct: 27264 EEQNNKDDDKNNNKCDEKRDLEDTETEPAVPPPNALLLMRCRSAPAKSWLEERMKVKTEQ 27443
Query: 60 EKTPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMK 101
EK EQ +EK+ D++S +E + + L M+
Sbjct: 27444 EKREEQ-KEEKETEDQETSMKTKKKDLRSLMEEEKMELVLMR 27566
>gb|U25190.1|PBU25190 Plasmodium berghei HSP70 family member PBGRP gene, partial cds
Length = 1579
Score = 37.4 bits (85), Expect = 1.5
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Frame = +1
Query: 165 KLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQ-----------TEIKITTVVQ-HTFQG 212
++++ I+ K+K ++D + I+ ++K+++ T+I+I +V+ H F
Sbjct: 376 RVMDYFIKMFKKKNNIDLRTDKRAIQKLRKEVEIAKRNLSVVHSTQIEIEDIVEGHNFSE 555
Query: 213 LILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEI-KITTVVQHTFQ 271
+ +K D RET+ ++K L+ K E S++ + + T I KI +++ F
Sbjct: 556 TLTRAKFEELNDDLFRETLEPVKKVLDDAKYEKSKIDEIVLVGGSTRIPKIQQIIKEFFN 735
Query: 272 G 272
G
Sbjct: 736 G 738
>ref|NM_031683.1| Rattus norvegicus SMC (segregation of mitotic chromosomes 1)-like 1
(yeast) (Smc1l1), mRNA
Length = 3933
Score = 36.6 bits (83), Expect = 2.6
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
Frame = +1
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKM--------ENSEMIKTMKKKLQTEIK 201
++ KKRL+ + +++ EKN+ KED DK+ ++ I+ +KK+ Q +K
Sbjct: 2455 EIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMK 2634
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
I + T L + A+ + + ++E+ L N EM K+ E K
Sbjct: 2635 I---IDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETK 2805
Query: 262 I 262
+
Sbjct: 2806 L 2808
>emb|AJ005113.1|RNAJ5113 Rattus norvegicus mRNA for SMC-protein Molecular characterization of
a rat heterochromatin associated SMC-protein
Length = 3933
Score = 36.6 bits (83), Expect = 2.6
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
Frame = +1
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKM--------ENSEMIKTMKKKLQTEIK 201
++ KKRL+ + +++ EKN+ KED DK+ ++ I+ +KK+ Q +K
Sbjct: 2455 EIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMK 2634
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
I + T L + A+ + + ++E+ L N EM K+ E K
Sbjct: 2635 I---IDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETK 2805
Query: 262 I 262
+
Sbjct: 2806 L 2808
>dbj|D80000.1|D80000 Human mRNA for KIAA0178 gene, partial cds
Length = 5803
Score = 36.6 bits (83), Expect = 2.6
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
Frame = +3
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKM--------ENSEMIKTMKKKLQTEIK 201
++ KKRL+ + +++ EKN+ KED DK+ ++ I+ +KK+ Q +K
Sbjct: 2382 EIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMK 2561
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
I + T L + A+ + + ++E+ L N EM K+ E K
Sbjct: 2562 I---IDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETK 2732
Query: 262 I 262
+
Sbjct: 2733 L 2735
>ref|XM_050403.1| Homo sapiens SMC1 structural maintenance of chromosomes 1-like 1
(yeast) (SMC1L1), mRNA
Length = 5192
Score = 36.6 bits (83), Expect = 2.6
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
Frame = +1
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKM--------ENSEMIKTMKKKLQTEIK 201
++ KKRL+ + +++ EKN+ KED DK+ ++ I+ +KK+ Q +K
Sbjct: 2437 EIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMK 2616
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
I + T L + A+ + + ++E+ L N EM K+ E K
Sbjct: 2617 I---IDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETK 2787
Query: 262 I 262
+
Sbjct: 2788 L 2790
>ref|NM_019710.1| Mus musculus SMC (structural maintenance of chromosomes 1)-like 1 (S.
cerevisiae) (Smc1l1), mRNA
Length = 3964
Score = 36.6 bits (83), Expect = 2.6
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
Frame = +3
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKM--------ENSEMIKTMKKKLQTEIK 201
++ KKRL+ + +++ EKN+ KED DK+ ++ I+ +KK+ Q +K
Sbjct: 2508 EIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMK 2687
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
I + T L + A+ + + ++E+ L N EM K+ E K
Sbjct: 2688 I---IDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETK 2858
Query: 262 I 262
+
Sbjct: 2859 L 2861
>ref|NM_006306.1| Homo sapiens SMC1 structural maintenance of chromosomes 1-like 1
(yeast) (SMC1L1), mRNA
Length = 5190
Score = 36.6 bits (83), Expect = 2.6
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
Frame = +1
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKM--------ENSEMIKTMKKKLQTEIK 201
++ KKRL+ + +++ EKN+ KED DK+ ++ I+ +KK+ Q +K
Sbjct: 2437 EIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMK 2616
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
I + T L + A+ + + ++E+ L N EM K+ E K
Sbjct: 2617 I---IDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETK 2787
Query: 262 I 262
+
Sbjct: 2788 L 2790
>gb|AF047600.1|AF047600 Mus musculus chromosome segregation protein SmcB (SmcB) mRNA,
complete cds
Length = 3964
Score = 36.6 bits (83), Expect = 2.6
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
Frame = +3
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKM--------ENSEMIKTMKKKLQTEIK 201
++ KKRL+ + +++ EKN+ KED DK+ ++ I+ +KK+ Q +K
Sbjct: 2508 EIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMK 2687
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
I + T L + A+ + + ++E+ L N EM K+ E K
Sbjct: 2688 I---IDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETK 2858
Query: 262 I 262
+
Sbjct: 2859 L 2861
>gb|S78271.1|S78271 SB1.8/DXS423E=mitosis-specific chromosome segregation protein SMC1
homolog [human, HT1080 and M426 fibroblast cell lines,
mRNA, 5190 nt]
Length = 5190
Score = 36.6 bits (83), Expect = 2.6
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
Frame = +1
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKM--------ENSEMIKTMKKKLQTEIK 201
++ KKRL+ + +++ EKN+ KED DK+ ++ I+ +KK+ Q +K
Sbjct: 2437 EIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMK 2616
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
I + T L + A+ + + ++E+ L N EM K+ E K
Sbjct: 2617 I---IDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETK 2787
Query: 262 I 262
+
Sbjct: 2788 L 2790
>gb|AE000711.1|AE000711 Aquifex aeolicus section 43 of 109 of the complete genome
Length = 12666
Score = 36.6 bits (83), Expect = 2.6
Identities = 30/108 (27%), Positives = 52/108 (47%)
Frame = +3
Query: 158 LKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILAS 217
LK+A S+L ++Q + K +E++ K E + ++ KK L E+K + ++ A
Sbjct: 11433 LKEAYISRLDKLQEKYRKLQEELSKPEVIQDVEKYKK-LSKELKELQEINELYERYKKAQ 11609
Query: 218 KTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIKITTV 265
K E +E + +KDL L E + KKL+ E+K+ V
Sbjct: 11610 K----ELKEAKELLKSSDKDLRELAEEEVNRLTEEMKKLEEELKVHLV 11741
>gb|AF072712.1|AF072712 Bos taurus SMC1 protein (SMC1) mRNA, complete cds
Length = 3702
Score = 36.6 bits (83), Expect = 2.6
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
Frame = +1
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKM--------ENSEMIKTMKKKLQTEIK 201
++ KKRL+ + +++ EKN+ KED DK+ ++ I+ +KK+ Q +K
Sbjct: 2404 EIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMK 2583
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
I + T L + A+ + + ++E+ L N EM K+ E K
Sbjct: 2584 I---IDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETK 2754
Query: 262 I 262
+
Sbjct: 2755 L 2757
>emb|AL110477.1|CEY113G7B Caenorhabditis elegans cosmid Y113G7B, complete sequence
Length = 88682
Score = 36.2 bits (82), Expect = 3.5
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 9/157 (5%)
Frame = -1
Query: 151 VRKKRLQLKQASRSKLLEIQIEKN---------KQKEDVDKMENSEMIKTMKKKLQTEIK 201
+ KK K + K ++ +EKN + K ++K E TMKK + E K
Sbjct: 23795 MEKKVTMKKPVTMEK--KVTMEKNVAMEKPVTMEMKVTMEKPVTMEKKVTMKKPVTMEKK 23622
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
+T + T + K E P E + +EK + K + TM+KK+ E
Sbjct: 23621 VTMEKKVTME------KNVAMEKPVTMEMKVTMEKPVTMEKKVTMKKPVTMEKKVTMEKP 23460
Query: 262 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDL 298
+T + T + + K E P E + +EK++
Sbjct: 23459 VTMEKKVTMKKPVTMEKKVTMEKPVTMEKKVTMEKNV 23349
Score = 35.8 bits (81), Expect = 4.5
Identities = 30/124 (24%), Positives = 51/124 (40%)
Frame = -1
Query: 175 KQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQL 234
K+ ++K E TM+K + E +T ++ T + + K + P E + +
Sbjct: 23648 KKPVTMEKKVTMEKKVTMEKNVAMEKPVTMEMKVTMEKPVTMEKKVTMKKPVTMEKKVTM 23469
Query: 235 EKDLNTLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQL 294
EK + K TMKK + E K+T T + + K E P E +++
Sbjct: 23468 EKPVTMEKKV------TMKKPVTMEKKVTMEKPVTMEKKVTMEKNVTMEKPVTMEKKVKM 23307
Query: 295 EKDL 298
EK L
Sbjct: 23306 EKKL 23295
>ref|NM_075500.1| Caenorhabditis elegans
Length = 3129
Score = 36.2 bits (82), Expect = 3.5
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 9/157 (5%)
Frame = +2
Query: 151 VRKKRLQLKQASRSKLLEIQIEKN---------KQKEDVDKMENSEMIKTMKKKLQTEIK 201
+ KK K + K ++ +EKN + K ++K E TMKK + E K
Sbjct: 599 MEKKVTMKKPVTMEK--KVTMEKNVAMEKPVTMEMKVTMEKPVTMEKKVTMKKPVTMEKK 772
Query: 202 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIK 261
+T + T + K E P E + +EK + K + TM+KK+ E
Sbjct: 773 VTMEKKVTME------KNVAMEKPVTMEMKVTMEKPVTMEKKVTMKKPVTMEKKVTMEKP 934
Query: 262 ITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDL 298
+T + T + + K E P E + +EK++
Sbjct: 935 VTMEKKVTMKKPVTMEKKVTMEKPVTMEKKVTMEKNV 1045
Score = 35.8 bits (81), Expect = 4.5
Identities = 30/124 (24%), Positives = 51/124 (40%)
Frame = +2
Query: 175 KQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQL 234
K+ ++K E TM+K + E +T ++ T + + K + P E + +
Sbjct: 746 KKPVTMEKKVTMEKKVTMEKNVAMEKPVTMEMKVTMEKPVTMEKKVTMKKPVTMEKKVTM 925
Query: 235 EKDLNTLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALRETVLQL 294
EK + K TMKK + E K+T T + + K E P E +++
Sbjct: 926 EKPVTMEKKV------TMKKPVTMEKKVTMEKPVTMEKKVTMEKNVTMEKPVTMEKKVKM 1087
Query: 295 EKDL 298
EK L
Sbjct: 1088EKKL 1099
>ref|NM_060159.1| Caenorhabditis elegans
Length = 1455
Score = 36.2 bits (82), Expect = 3.5
Identities = 43/174 (24%), Positives = 79/174 (44%), Gaps = 28/174 (16%)
Frame = +1
Query: 152 RKKRLQLKQASR-------SKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITT 204
+KK +Q K+ SR S+ ++EK+ KE +MEN +T K++++ IKI
Sbjct: 427 KKKIVQDKKISRLRSDIARSEKSFDKVEKDIHKEIQRQMEN----ETKKEEIERRIKIFE 594
Query: 205 V----VQHTFQGLILASKTN-----WAEDPALRETVLQLEKDLNTLKMENS--EMIKTMK 253
V + FQ L+++ K + D + E + + K L M N E +K MK
Sbjct: 595 VENSGISDEFQKLLISLKEDSEGRGKTGDRRIGELEVLMAKGTKCLDMMNEKIENLKEMK 774
Query: 254 KKLQTEIKITTVV----------QHTFQGLILASKTNWAEDPALRETVLQLEKD 297
+++TT V + + + K NW + L++ ++QL+++
Sbjct: 775 LDKSDYLQVTTPVLSKKGSAVESRRRSKSNVQNPKENWKQLEDLKKQIIQLKRE 936
>ref|NM_012337.1| Homo sapiens nasopharyngeal epithelium specific protein 1 (NESG1),
mRNA
Length = 1850
Score = 36.2 bits (82), Expect = 3.5
Identities = 45/206 (21%), Positives = 82/206 (38%), Gaps = 5/206 (2%)
Frame = +1
Query: 2 EEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEK 61
EE R+R E E +R + + E+ E+R SLL R Q K+Q+LEY + + K
Sbjct: 781 EELERKRRE---ERIRGRRQIVEQMEKNQEER-SLLAEQREQEKEQMLEYMEQLQEEDLK 948
Query: 62 TPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLT 121
E+ Q+K +K E+K + K L + L
Sbjct: 949 DMERRQQQK---------------LKMQAEIKRINDENQKQKAELLAQEK--------LA 1059
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKN-----KQ 176
D M +++ K M ++K + +A + K + Q E++ +
Sbjct: 1060DQM--VMEFTKKKMAREAEFEAEQERIRREKEKEIARLRAMQEKAQDYQAEQDALRAKRN 1233
Query: 177 KEDVDKMENSEMIKTMKKKLQTEIKI 202
+E D+ + + +KK++TE ++
Sbjct: 1234QEVADREWRRKEKENARKKMETEAEL 1311
>gb|AF094758.1|AF094758 Homo sapiens nasopharyngeal epithelium specific protein 1 (NESG1)
mRNA, complete cds
Length = 1850
Score = 36.2 bits (82), Expect = 3.5
Identities = 45/206 (21%), Positives = 82/206 (38%), Gaps = 5/206 (2%)
Frame = +1
Query: 2 EEQPRERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEK 61
EE R+R E E +R + + E+ E+R SLL R Q K+Q+LEY + + K
Sbjct: 781 EELERKRRE---ERIRGRRQIVEQMEKNQEER-SLLAEQREQEKEQMLEYMEQLQEEDLK 948
Query: 62 TPEQIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDNMENMGPENCVLT 121
E+ Q+K +K E+K + K L + L
Sbjct: 949 DMERRQQQK---------------LKMQAEIKRINDENQKQKAELLAQEK--------LA 1059
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKN-----KQ 176
D M +++ K M ++K + +A + K + Q E++ +
Sbjct: 1060DQM--VMEFTKKKMAREAEFEAEQERIRREKEKEIARLRAMQEKAQDYQAEQDALRAKRN 1233
Query: 177 KEDVDKMENSEMIKTMKKKLQTEIKI 202
+E D+ + + +KK++TE ++
Sbjct: 1234QEVADREWRRKEKENARKKMETEAEL 1311
>emb|X69121.1|PFGRPAA P.falciparum Pfgrp mRNA for heat shock protein
Length = 2547
Score = 36.2 bits (82), Expect = 3.5
Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Frame = +1
Query: 165 KLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQ-----------TEIKITTVVQ-HTFQG 212
++++ I+ K+K ++D + I+ ++K+++ T+I+I +++ H F
Sbjct: 988 RVMDYFIKMFKKKNNIDLRTDKRAIQKLRKEVEIAKRNLSVVHSTQIEIEDILEGHNFSE 1167
Query: 213 LILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEI-KITTVVQHTFQ 271
+ +K D RET+ ++K L+ K E S++ + + T I KI +++ F
Sbjct: 1168 TLTRAKFEELNDDLFRETLEPVKKVLDDAKYEKSKIDEIVLVGGSTRIPKIQQIIKEFFN 1347
Query: 272 G 272
G
Sbjct: 1348 G 1350
>emb|Y12234.1|EFAS48C E.faecalis plasmid DNA containing gene cluster involved in production
and immunity to peptide antibiotic AS-48
Length = 6466
Score = 36.2 bits (82), Expect = 3.5
Identities = 29/106 (27%), Positives = 52/106 (48%)
Frame = +3
Query: 169 IQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALR 228
+ + KN+Q ++K + EM K +K +++ KI T+ Q A +
Sbjct: 5469 LSVAKNEQTTIINKKMDDEMKKA--EKAESDSKIETIQQAL---------------DAQK 5597
Query: 229 ETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLI 274
E VLQ ++ L+ ++ S T++ QT+ KITT V F+G++
Sbjct: 5598 EAVLQAKQALDAANVDLSSANNTIE---QTKKKITTTVTAPFKGIV 5726
>gb|L07649.1|YSCASF2A Saccharomyces cerevisiae anti-silencing protein (ASF2) gene,
complete cds
Length = 1993
Score = 35.8 bits (81), Expect = 4.5
Identities = 63/275 (22%), Positives = 112/275 (39%), Gaps = 6/275 (2%)
Frame = +1
Query: 6 RERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEKTPE- 64
+E ++ AE E L + EER D +LL+ L+ + +L +YK++ +T K E
Sbjct: 505 KETHKSSAEKRIELVRLPSSKEERNYDEYTLLVNLKKEICAKLQDYKNVQNTVNTKLDEI 684
Query: 65 QIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDN---MENMGPENCVLT 121
EK D +S+ K LA R +L+ +++ + N+ + T
Sbjct: 685 HTFHEKYYEGLELSLDSKVFDAESS---KELAKVRRELNNVRKNSEIKVNNLKMQLLQAT 855
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVD 181
++H+ K K D K +L + +L + Q+E ++
Sbjct: 856 KSLEHLKKQAK--------------AKDDYLKCIPELVDKANLTMLSYKKSIANQRETIE 993
Query: 182 KMENSEMIKTMKKKLQTEIKITTVVQ-HTFQGLILASKTNWAEDP-ALRETVLQLEKDLN 239
++ +E+ + + K Q E + VQ T L+ + N ED A++E LQ DL
Sbjct: 994 ALQ-AELSQQSETKGQIETETQNQVQIPTNVTLVDPFEENNPEDLFAIQEQELQ---DLR 1161
Query: 240 TLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLI 274
K E +T L+ + ++Q Q LI
Sbjct: 1162LHKKMADERSRTTHLHLERKNNTIKLLQSYVQSLI 1266
>emb|AJ276470.1|TTH276470 Tetrahymena thermophila mRNA for tetrin A protein
Length = 2482
Score = 35.8 bits (81), Expect = 4.5
Identities = 28/111 (25%), Positives = 51/111 (45%)
Frame = +1
Query: 150 DVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHT 209
D+ +KRL ++A R +LLE+++ + K D+D + NS + K+KL+ K
Sbjct: 1426 DIERKRLLAEEAERKRLLELEV*E*IHKRDIDVLRNSHNFE--KQKLEE*EK-------- 1575
Query: 210 FQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTEI 260
N+ D +E + Q E+ N L + K +K ++ E+
Sbjct: 1576 --------TLNYVLDAK*KEALEQKERARNYLISASEAERKEREKSIEAEL 1704
>emb|X83276.1|SCDNAIV S.cerevisiae DNA for ORFs from chromosome IV
Length = 35383
Score = 35.8 bits (81), Expect = 4.5
Identities = 63/275 (22%), Positives = 112/275 (39%), Gaps = 6/275 (2%)
Frame = -3
Query: 6 RERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEKTPE- 64
+E ++ AE E L + EER D +LL+ L+ + +L +YK++ +T K E
Sbjct: 5501 KETHKSSAEKRIELVRLPSSKEERNYDEYTLLVNLKKEICAKLQDYKNVQNTVNTKLDEI 5322
Query: 65 QIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDN---MENMGPENCVLT 121
EK D +S+ K LA R +L+ +++ + N+ + T
Sbjct: 5321 HTFHEKYYEGLELSLDSKVFDAESS---KELAKVRRELNNVRKNSEIKVNNLKMQLLQAT 5151
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVD 181
++H+ K K D K +L + +L + Q+E ++
Sbjct: 5150 KSLEHLKKQAK--------------AKDDYLKCIPELVDKANLTMLSYKKSIANQRETIE 5013
Query: 182 KMENSEMIKTMKKKLQTEIKITTVVQ-HTFQGLILASKTNWAEDP-ALRETVLQLEKDLN 239
++ +E+ + + K Q E + VQ T L+ + N ED A++E LQ DL
Sbjct: 5012 ALQ-AELSQQSETKGQIETETQNQVQIPTNVTLVDPFEENNPEDLFAIQEQELQ---DLR 4845
Query: 240 TLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLI 274
K E +T L+ + ++Q Q LI
Sbjct: 4844 LHKKMADERSRTTHLHLERKNNTIKLLQSYVQSLI 4740
>emb|Z74245.1|SCYDL197C S.cerevisiae chromosome IV reading frame ORF YDL197c
Length = 2189
Score = 35.8 bits (81), Expect = 4.5
Identities = 63/275 (22%), Positives = 112/275 (39%), Gaps = 6/275 (2%)
Frame = -1
Query: 6 RERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEKTPE- 64
+E ++ AE E L + EER D +LL+ L+ + +L +YK++ +T K E
Sbjct: 1613 KETHKSSAEKRIELVRLPSSKEERNYDEYTLLVNLKKEICAKLQDYKNVQNTVNTKLDEI 1434
Query: 65 QIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDN---MENMGPENCVLT 121
EK D +S+ K LA R +L+ +++ + N+ + T
Sbjct: 1433 HTFHEKYYEGLELSLDSKVFDAESS---KELAKVRRELNNVRKNSEIKVNNLKMQLLQAT 1263
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVD 181
++H+ K K D K +L + +L + Q+E ++
Sbjct: 1262 KSLEHLKKQAK--------------AKDDYLKCIPELVDKANLTMLSYKKSIANQRETIE 1125
Query: 182 KMENSEMIKTMKKKLQTEIKITTVVQ-HTFQGLILASKTNWAEDP-ALRETVLQLEKDLN 239
++ +E+ + + K Q E + VQ T L+ + N ED A++E LQ DL
Sbjct: 1124 ALQ-AELSQQSETKGQIETETQNQVQIPTNVTLVDPFEENNPEDLFAIQEQELQ---DLR 957
Query: 240 TLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLI 274
K E +T L+ + ++Q Q LI
Sbjct: 956 LHKKMADERSRTTHLHLERKNNTIKLLQSYVQSLI 852
>emb|X99000.1|CS39KBCIV S.cerevisiae 39kb DNA segment of chromosome IV
Length = 39090
Score = 35.8 bits (81), Expect = 4.5
Identities = 63/275 (22%), Positives = 112/275 (39%), Gaps = 6/275 (2%)
Frame = -1
Query: 6 RERSEAGAEACEEKRGLSQAAEERIEDRISLLLRLRAQTKQQLLEYKSMIDTNEEKTPE- 64
+E ++ AE E L + EER D +LL+ L+ + +L +YK++ +T K E
Sbjct: 38817 KETHKSSAEKRIELVRLPSSKEERNYDEYTLLVNLKKEICAKLQDYKNVQNTVNTKLDEI 38638
Query: 65 QIMQEKQXXXXXXXXXXXXXDVKSNIEMKSLALSRMKLSVALRDN---MENMGPENCVLT 121
EK D +S+ K LA R +L+ +++ + N+ + T
Sbjct: 38637 HTFHEKYYEGLELSLDSKVFDAESS---KELAKVRRELNNVRKNSEIKVNNLKMQLLQAT 38467
Query: 122 DDMKHILKLQKLIMXXXXXXXXXXXXXXDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVD 181
++H+ K K D K +L + +L + Q+E ++
Sbjct: 38466 KSLEHLKKQAK--------------AKDDYLKCIPELVDKANLTMLSYKKSIANQRETIE 38329
Query: 182 KMENSEMIKTMKKKLQTEIKITTVVQ-HTFQGLILASKTNWAEDP-ALRETVLQLEKDLN 239
++ +E+ + + K Q E + VQ T L+ + N ED A++E LQ DL
Sbjct: 38328 ALQ-AELSQQSETKGQIETETQNQVQIPTNVTLVDPFEENNPEDLFAIQEQELQ---DLR 38161
Query: 240 TLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLI 274
K E +T L+ + ++Q Q LI
Sbjct: 38160 LHKKMADERSRTTHLHLERKNNTIKLLQSYVQSLI 38056
>gb|AF139990.1|AF139990 Danio rerio mitotic kinesin-like protein 1 (zMKLP1) mRNA, complete
cds
Length = 3116
Score = 35.4 bits (80), Expect = 5.9
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Frame = +1
Query: 150 DVRKKRLQLKQASRSKLLEIQIEK-NK---------QKEDVDKMENSEMIKTMKKKLQTE 199
DV RL R K+ ++ IE+ NK Q++D + + +I+ + KL +
Sbjct: 1540 DVTLPRLIEALEKRHKIRQMMIEEYNKTATMLKSVLQEQDGNILSKENVIQEQRGKLGEK 1719
Query: 200 IKITTVVQHTFQGLILASKTNWAEDPALRETVLQLEKDLNTLKMENSEMIKTMKKKLQTE 259
K+ ++ L SK + L++T E+D +L+ E +++ +++LQ E
Sbjct: 1720 DKMLQNQKNEIDRLEKKSKMLEYKIDILQKTTNIYEEDKRSLQNE----LESREQRLQRE 1887
Query: 260 IKITTVVQHTFQGLILASKTNWAEDPALRETVLQLE 295
+ ++ QG++ +K W ++ R QLE
Sbjct: 1888 MSEKRRIEARMQGMVSDTKLKWEKECERRVNAKQLE 1995
>dbj|D85752.1|D85752 Enterococcus faecalis plasmid pPD1 bacA, bacB, bacC, bacD, bacE,
bacF, bacG, bacH and bacI genes, complete cds
Length = 9400
Score = 35.4 bits (80), Expect = 5.9
Identities = 29/106 (27%), Positives = 51/106 (47%)
Frame = +3
Query: 169 IQIEKNKQKEDVDKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLILASKTNWAEDPALR 228
+ + KN+Q ++K + EM K +K + + KI T+ Q A +
Sbjct: 6258 LTVAKNEQTTIINKKMDDEMKKA--EKAEADNKIETIQQAL---------------DAQK 6386
Query: 229 ETVLQLEKDLNTLKMENSEMIKTMKKKLQTEIKITTVVQHTFQGLI 274
E VLQ ++ L+ ++ S T++ QT+ KITT V F+G++
Sbjct: 6387 EAVLQAQQALDAANVDLSSANNTIE---QTKKKITTTVTAPFKGIV 6515
>ref|XM_051949.5| Homo sapiens KIAA0456 protein (SRGAP2), mRNA
Length = 5966
Score = 35.0 bits (79), Expect = 7.7
Identities = 22/47 (46%), Positives = 28/47 (58%), Gaps = 3/47 (6%)
Frame = +2
Query: 222 AEDPALRETVL---QLEKDLNTLKMENSEMIKTMKKKLQTEIKITTV 265
A+ P E V QL+ L+TLK+EN E+ KTM+ LQT I TV
Sbjct: 812 AQQPVQSELVQRCQQLQSRLSTLKIENEEVKKTMEATLQTIQDIVTV 952
>dbj|AB007925.1|AB007925 Homo sapiens mRNA for KIAA0456 protein, partial cds
Length = 6305
Score = 35.0 bits (79), Expect = 7.7
Identities = 22/47 (46%), Positives = 28/47 (58%), Gaps = 3/47 (6%)
Frame = +1
Query: 222 AEDPALRETVL---QLEKDLNTLKMENSEMIKTMKKKLQTEIKITTV 265
A+ P E V QL+ L+TLK+EN E+ KTM+ LQT I TV
Sbjct: 1144 AQQPVQSELVQRCQQLQSRLSTLKIENEEVKKTMEATLQTIQDIVTV 1284
>ref|XM_059095.2| Homo sapiens similar to KIAA0456 protein (LOC126920), mRNA
Length = 1293
Score = 35.0 bits (79), Expect = 7.7
Identities = 22/47 (46%), Positives = 28/47 (58%), Gaps = 3/47 (6%)
Frame = +1
Query: 222 AEDPALRETVL---QLEKDLNTLKMENSEMIKTMKKKLQTEIKITTV 265
A+ P E V QL+ L+TLK+EN E+ KTM+ LQT I TV
Sbjct: 985 AQQPVQSELVQRCQQLQSRLSTLKIENEEVKKTMEATLQTIQDIVTV 1125
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 19, 2002 12:00 AM
Number of letters in database: 587,334,133
Number of sequences in database: 1,164,257
Lambda K H
0.311 0.126 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 956,668,719
Number of Sequences: 1164257
Number of extensions: 8103461
Number of successful extensions: 34013
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 15463
Number of HSP's successfully gapped in prelim test: 1492
Number of HSP's that attempted gapping in prelim test: 12852
Number of HSP's gapped (non-prelim): 24073
length of query: 300
length of database: 1,627,433,809
effective HSP length: 134
effective length of query: 166
effective length of database: 1,471,423,371
effective search space: 244256279586
effective search space used: 244256279586
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 78 (34.7 bits)