TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(218 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,165,784 sequences; 601,717,568 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_007642.1| Mus musculus CD28 antigen (Cd28), mRNA 454 e-126
gb|M34563.1|MUSCD28 Mouse glycoprotein CD28 mRNA, complete cds 454 e-126
ref|NM_013121.1| Rattus norvegicus CD28 antigen (Cd28), mRNA 409 e-113
emb|X55288.1|RNCD28RNA R.norvegicus CD28 mRNA 409 e-113
dbj|D49841.1|RABCD28A Rabbit mRNA for CD28, complete cds 307 4e-82
dbj|AB025316.1|AB025316 Felis catus mRNA for CD28, complete... 306 6e-82
gb|AF154842.1|AF154842 Canis familiaris costimulatory molec... 306 1e-81
gb|U57754.1|FCU57754 Felis catus T-cell specific surface gl... 305 2e-81
gb|AF130427.1|AF130427 Marmota monax CD28 antigen mRNA, com... 305 2e-81
gb|AF259962.1|AF259962 Canis familiaris T-cell costimulator... 301 3e-80
gb|AF092739.1|AF092739 Ovis aries T-cell specific surface g... 292 1e-77
emb|X93304.1|BTCD28PRT B.taurus mRNA for CD28 protein 291 2e-77
ref|XM_002489.1| Homo sapiens CD28 antigen (Tp44) (CD28), mRNA 288 2e-76
ref|NM_006139.1| Homo sapiens CD28 antigen (Tp44) (CD28), mRNA 288 2e-76
gb|J02988.1|HUMSPTCS Human T-cell-specific homodimer surfac... 288 2e-76
gb|AF344852.1|AF344852 Macaca nemestrina CD28 protein precu... 288 2e-76
gb|AF344842.1|AF344842 Cercocebus torquatus atys CD28 prote... 283 7e-75
gb|AF344855.1|AF344855 Macaca mulatta CD28 protein precurso... 279 1e-73
gb|AF344837.1|AF344837 Papio cynocephalus anubis CD28 prote... 277 5e-73
gb|AF344845.1|AF344845 Callithrix jacchus CD28 protein mRNA... 257 4e-67
gb|L22178.1|DOGCSP Canis familiaris cell surface protein ge... 249 1e-64
emb|X67915.1|GGCHT28 G.gallus CHT28 mRNA (lymphocyte surfac... 197 6e-49
gb|AF225899.1|AF225899 Homo sapiens PAC clone 219d7, comple... 172 2e-41
gb|AF411057.1|AF411057 Homo sapiens clone BAC_22606 CD28 an... 172 2e-41
gb|M37813.1|HUMCD282 Human T-cell membrane glycoprotein CD2... 172 2e-41
gb|M74361.1|MUSCD28A Mouse CD28 mRNA, 3' end 126 1e-27
gb|AF222342.1|AF222342 Homo sapiens T-cell specific surface... 109 2e-22
gb|AF222341.1|AF222341 Homo sapiens T-cell specific surface... 108 2e-22
ref|NM_031674.1| Rattus norvegicus CD152 antigen (Cd152), mRNA 84 8e-15
gb|U37121.1|RNU37121 Rattus norvegicus cytotoxic T-lymphocy... 84 8e-15
gb|AF092740.1|AF092740 Ovis aries cytotoxic T-lymphocyte-as... 76 2e-12
emb|X93305.1|BTCTLA4PT B.taurus mRNA for CTLA-4 protein 76 2e-12
ref|NM_009843.1| Mus musculus CD152 antigen (Cd152), mRNA 75 5e-12
emb|X05719.1|MMCTLA4 Mouse mRNA for immunoglobulin superfam... 75 5e-12
gb|AF130428.1|AF130428 Marmota monax cytotoxic T-lymphocyte... 74 6e-12
dbj|D49844.1|RABCTLAD Rabbit mRNA for CTLA-4 (cytotoxic T l... 74 8e-12
gb|AF215893.1|AF215893 Canis familiaris cytotoxic T-lymphoc... 72 4e-11
gb|AF154843.1|AF154843 Canis familiaris costimulatory molec... 72 4e-11
gb|AF154844.1|AF154844 Felis catus costimulatory molecule B... 71 7e-11
dbj|AB029395.1|AB029395 Felis catus CTLA4 mRNA for cytotoxi... 71 7e-11
gb|AF153202.1|AF153202 Felis catus cytotoxic T lymphocyte-a... 71 7e-11
gb|AF170725.1|AF170725 Felis catus CTLA-4 protein (CTLA-4) ... 71 7e-11
emb|AJ295273.1|HSA295273 Homo sapiens mRNA for putative CD2... 64 7e-11
gb|AF143204.1|AF143204 Canis familiaris breed beagle T-cell... 70 9e-11
gb|AF344834.1|AF344834 Aotus trivirgatus CD152 protein prec... 70 1e-10
gb|AF220248.1|AF220248 Sus scrofa cytotoxic T lymphocyte-as... 69 2e-10
gb|AF281633.1|AF281633 Sus scrofa cytotoxic T-lymphocyte-as... 69 2e-10
gb|AF344854.1|AF344854 Macaca nemestrina CD152 protein prec... 69 3e-10
gb|AF344846.1|AF344846 Macaca mulatta CD152 protein precurs... 69 3e-10
gb|AF344838.1|AF344838 Papio cynocephalus anubis CD152 prot... 69 3e-10
gb|AF344848.1|AF344848 Cercocebus torquatus atys clone MNCT... 69 3e-10
gb|AF414120.1|AF414120 Homo sapiens CTLA4 (CTLA4) mRNA, com... 67 1e-09
ref|NM_005214.1| Homo sapiens cytotoxic T-lymphocyte-associ... 66 2e-09
gb|L15006.1|HUMCTLA4B Homo sapiens Ig superfamily CTLA-4 mR... 66 2e-09
gb|M37815.1|HUMCD284 Human T-cell membrane glycoprotein CD2... 64 8e-09
gb|U90271.1|U90271 Rattus norvegicus CTLA-4 mRNA, complete cds 62 3e-08
gb|AF142145.1|AF142145 Mus musculus cytotoxic T-lymphocyte ... 52 3e-05
gb|AF218312.1|AF218312 Synthetic construct inducible costim... 50 1e-04
emb|AJ277832.1|HSA277832 Homo sapiens mRNA for inducible T-... 50 1e-04
ref|NM_012092.1| Homo sapiens inducible T-cell co-stimulato... 50 1e-04
dbj|AB023135.1|AB023135 Homo sapiens mRNA for activation-in... 50 1e-04
ref|XM_087025.1| Homo sapiens inducible T-cell co-stimulato... 50 1e-04
gb|M37814.1|HUMCD283 Human T-cell membrane glycoprotein CD2... 50 2e-04
gb|AC010138.6| Homo sapiens chromosome 2 clone RP11-175H4, ... 48 5e-04
gb|AF225900.1|AF225900 Homo sapiens PAC clone p61e2, comple... 48 5e-04
gb|AF411058.1|AF411058 Homo sapiens clone BAC_22700 cytotox... 48 5e-04
gb|U90273.1|U90273 Homo sapiens CTLA-4 mRNA, partial cds 48 6e-04
gb|AC103880.4| Homo sapiens chromosome 2 clone RP11-278L16,... 47 0.001
gb|AF411059.1|AF411059 Homo sapiens clone BAC_22608 inducib... 47 0.001
gb|AF316875.1|AF316875 Homo sapiens CTLA-4 V domain region ... 47 0.001
gb|M37243.1|HUMIGCTL1 Homo sapiens cytotoxic T-lymphocyte-a... 46 0.002
gb|AF222343.1|AF222343 Homo sapiens T-cell specific surface... 45 0.004
dbj|AB023132.1|AB023132 Mus musculus mRNA for activation-in... 40 0.099
gb|AF257230.1|AF257230 Mus musculus CCLP precursor (CCLP) m... 40 0.099
ref|NM_017480.1| Mus musculus inducible T-cell co-stimulato... 40 0.099
emb|AJ250559.1|MMU250559 Mus musculus mRNA for surface prot... 40 0.099
gb|AF216748.1|AF216748 Mus musculus CD28-related protein 1 ... 40 0.099
gb|AF307318.1|AF307318 Cricetulus griseus clone PRN015 cyto... 37 0.84
gb|AF327185.1|AF327184S2 Mus musculus inducible costimulato... 35 3.2
emb|AL591674.3|AL591674 Zebrafish DNA sequence from clone X... 35 3.2
emb|AL138968.18| Human DNA sequence from clone RP6-13I1 on ... 35 4.2
gb|AF090916.1|AF090916 Homo sapiens clone HQ0312 35 4.2
gb|S76835.1|S76835 Ig VH=anti-sigma receptor Ig heavy chain... 35 4.2
emb|AL591596.5|AL591596 Zebrafish DNA sequence from clone X... 35 4.2
emb|AJ307500.1|MMU307500 Mus musculus partial 17.2.25-D-Jh4... 35 4.2
gb|BC021232.1|BC021232 Homo sapiens, clone IMAGE:4120623, m... 35 5.4
gb|M13329.1|MUSIGHEA Mouse Ig mu-chain active V-region VDJ4... 35 5.4
gb|M13328.1|MUSIGHDZ Mouse Ig mu-chain active V-region VDJ4... 35 5.4
ref|NM_015196.1| Homo sapiens KIAA0922 protein (KIAA0922), ... 35 5.4
emb|AL136932.1|HSM801896 Homo sapiens mRNA; cDNA DKFZp586H1... 35 5.4
dbj|AB023139.1|AB023139 Homo sapiens mRNA for KIAA0922 prot... 35 5.4
dbj|AP001046.1|AP001046 Homo sapiens genomic DNA, chromosom... 34 7.1
gb|AC004537.1|AC004537 Homo sapiens PAC clone RP5-872F7 fro... 34 7.1
gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, ... 34 7.1
gb|U61494.1|MMU61494 Mus musculus immunoglobulin heavy chai... 34 7.1
gb|AC009169.8| Homo sapiens chromosome 16 clone RP11-90K18,... 34 7.1
dbj|AP001751.1|AP001751 Homo sapiens genomic DNA, chromosom... 34 7.1
gb|M94110.1|BACCTA Bacillus firmus DNA photolyase (phr) gen... 34 7.1
emb|AJ298052.1|HSA298052 Homo sapiens partial mRNA for immu... 34 9.2
gb|AC093892.3| Homo sapiens chromosome 2 clone RP11-702L18,... 34 9.2
gb|AC021192.7|AC021192 Homo sapiens clone RP11-767N15, comp... 34 9.2
emb|AJ307481.1|MMU307481 Mus musculus partial 17.2.25-D-Jh4... 34 9.2
>ref|NM_007642.1| Mus musculus CD28 antigen (Cd28), mRNA
Length = 1492
Score = 454 bits (1168), Expect = e-126
Identities = 218/218 (100%), Positives = 218/218 (100%)
Frame = +3
Query: 1 MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGV 60
MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGV
Sbjct: 57 MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGV 236
Query: 61 NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 120
NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP
Sbjct: 237 NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 416
Query: 121 PPYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSR 180
PPYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSR
Sbjct: 417 PPYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSR 596
Query: 181 RNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYRP 218
RNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYRP
Sbjct: 597 RNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYRP 710
>gb|M34563.1|MUSCD28 Mouse glycoprotein CD28 mRNA, complete cds
Length = 1492
Score = 454 bits (1168), Expect = e-126
Identities = 218/218 (100%), Positives = 218/218 (100%)
Frame = +3
Query: 1 MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGV 60
MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGV
Sbjct: 57 MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGV 236
Query: 61 NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 120
NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP
Sbjct: 237 NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 416
Query: 121 PPYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSR 180
PPYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSR
Sbjct: 417 PPYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSR 596
Query: 181 RNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYRP 218
RNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYRP
Sbjct: 597 RNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYRP 710
>ref|NM_013121.1| Rattus norvegicus CD28 antigen (Cd28), mRNA
Length = 1284
Score = 409 bits (1051), Expect = e-113
Identities = 197/218 (90%), Positives = 203/218 (92%)
Frame = +3
Query: 1 MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGV 60
MTLRLLFLAL+FFSVQVTENKILVKQSPLLVVD+NEVSLSCRYSYNLLAKEFRASLYKGV
Sbjct: 33 MTLRLLFLALSFFSVQVTENKILVKQSPLLVVDNNEVSLSCRYSYNLLAKEFRASLYKGV 212
Query: 61 NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 120
NSDVEVCVGNGNFTYQPQFR N FNCDG+FDNETVTFRLWNL VNHTDIYFCKIE MYP
Sbjct: 213 NSDVEVCVGNGNFTYQPQFRPNVGFNCDGNFDNETVTFRLWNLDVNHTDIYFCKIEVMYP 392
Query: 121 PPYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSR 180
PPYLDNE+SNGTIIHIKEKHLCH Q+SPKLFW LVVVAGVL CYGLLVTV LC+IWTNSR
Sbjct: 393 PPYLDNEKSNGTIIHIKEKHLCHAQTSPKLFWPLVVVAGVLLCYGLLVTVTLCIIWTNSR 572
Query: 181 RNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYRP 218
RNRLLQ MNMTPRR G TRK YQPYAPARDFAAYRP
Sbjct: 573 RNRLLQSDYMNMTPRRLGPTRKHYQPYAPARDFAAYRP 686
>emb|X55288.1|RNCD28RNA R.norvegicus CD28 mRNA
Length = 1284
Score = 409 bits (1051), Expect = e-113
Identities = 197/218 (90%), Positives = 203/218 (92%)
Frame = +3
Query: 1 MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGV 60
MTLRLLFLAL+FFSVQVTENKILVKQSPLLVVD+NEVSLSCRYSYNLLAKEFRASLYKGV
Sbjct: 33 MTLRLLFLALSFFSVQVTENKILVKQSPLLVVDNNEVSLSCRYSYNLLAKEFRASLYKGV 212
Query: 61 NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 120
NSDVEVCVGNGNFTYQPQFR N FNCDG+FDNETVTFRLWNL VNHTDIYFCKIE MYP
Sbjct: 213 NSDVEVCVGNGNFTYQPQFRPNVGFNCDGNFDNETVTFRLWNLDVNHTDIYFCKIEVMYP 392
Query: 121 PPYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSR 180
PPYLDNE+SNGTIIHIKEKHLCH Q+SPKLFW LVVVAGVL CYGLLVTV LC+IWTNSR
Sbjct: 393 PPYLDNEKSNGTIIHIKEKHLCHAQTSPKLFWPLVVVAGVLLCYGLLVTVTLCIIWTNSR 572
Query: 181 RNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYRP 218
RNRLLQ MNMTPRR G TRK YQPYAPARDFAAYRP
Sbjct: 573 RNRLLQSDYMNMTPRRLGPTRKHYQPYAPARDFAAYRP 686
>dbj|D49841.1|RABCD28A Rabbit mRNA for CD28, complete cds
Length = 701
Score = 307 bits (786), Expect = 4e-82
Identities = 157/221 (71%), Positives = 175/221 (79%), Gaps = 4/221 (1%)
Frame = +3
Query: 1 MTLRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKG 59
M LRLL LA NFF S+Q TENKILVKQSP+LVV++NEV+LSC+Y+YNL +KEFRASLYKG
Sbjct: 12 MILRLL-LAFNFFPSIQGTENKILVKQSPMLVVNNNEVNLSCKYTYNLFSKEFRASLYKG 188
Query: 60 VNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMY 119
+S VEVCV NGNF++ QF S FNCDG NETVTF L NL+VN TDIYFCKIE MY
Sbjct: 189 ADSAVEVCVVNGNFSHPHQFHSTTGFNCDGKLGNETVTFYLKNLYVNQTDIYFCKIEVMY 368
Query: 120 PPPYLDNERSNGTIIHIKEKHLCHTQSSPK---LFWALVVVAGVLFCYGLLVTVALCVIW 176
PPPYLDNE+SNGTIIH+KE+H C SPK LFW LVVV VL Y +LVTVAL W
Sbjct: 369 PPPYLDNEKSNGTIIHVKEQHFCPAHPSPKSSTLFWVLVVVGAVLAFYSMLVTVALFSCW 548
Query: 177 TNSRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S++NRLLQ MNMTPRRPG TRK YQPYAPARDFAAYR
Sbjct: 549 MKSKKNRLLQSDYMNMTPRRPGPTRKHYQPYAPARDFAAYR 671
>dbj|AB025316.1|AB025316 Felis catus mRNA for CD28, complete cds
Length = 1504
Score = 306 bits (785), Expect = 6e-82
Identities = 157/221 (71%), Positives = 179/221 (80%), Gaps = 4/221 (1%)
Frame = +2
Query: 1 MTLRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKG 59
M LRLL LALNFF S+QVTENKILVKQ P LVV +NEV+LSC+Y++NL +KEFRASLYKG
Sbjct: 68 MILRLL-LALNFFPSIQVTENKILVKQLPRLVVYNNEVNLSCKYTHNLFSKEFRASLYKG 244
Query: 60 VNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMY 119
V+S VEVCV NGN+++QPQF S+ F+CDG NETVTF L NL VN TDIYFCKIE MY
Sbjct: 245 VDSAVEVCVVNGNYSHQPQFYSSTGFDCDGKLGNETVTFYLRNLFVNQTDIYFCKIEVMY 424
Query: 120 PPPYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIW 176
PPPY+DNE+SNGTIIH+KEKHLC Q SP K FWALVVV G+L Y LL TVAL W
Sbjct: 425 PPPYIDNEKSNGTIIHVKEKHLCPAQLSPESSKPFWALVVVGGILGFYSLLATVALGACW 604
Query: 177 TNSRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
++R+R+LQ MNMTPRRPG TR+ YQPYAPARDFAAYR
Sbjct: 605 MKTKRSRILQSDYMNMTPRRPGPTRRHYQPYAPARDFAAYR 727
>gb|AF154842.1|AF154842 Canis familiaris costimulatory molecule B7 receptor CD28 (CD28)
mRNA, complete cds
Length = 1075
Score = 306 bits (783), Expect = 1e-81
Identities = 157/221 (71%), Positives = 177/221 (80%), Gaps = 4/221 (1%)
Frame = +2
Query: 1 MTLRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKG 59
M LRLL LALNFF S+QVTENKILVKQ P LVV +NEV+LSC+Y+YNL +KEFRASLYKG
Sbjct: 74 MILRLL-LALNFFPSIQVTENKILVKQLPRLVVYNNEVNLSCKYTYNLFSKEFRASLYKG 250
Query: 60 VNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMY 119
V+S VEVCV NGN+++QPQF S+ F+CDG NETVTF L NL VN TDIYFCKIE MY
Sbjct: 251 VDSAVEVCVVNGNYSHQPQFYSSTGFDCDGKLGNETVTFYLRNLFVNQTDIYFCKIEVMY 430
Query: 120 PPPYLDNERSNGTIIHIKEKHLCHTQ---SSPKLFWALVVVAGVLFCYGLLVTVALCVIW 176
PPPY+ NE+SNGTIIH+KEKHLC + S K FWALVVV VL Y LLVTVALC W
Sbjct: 431 PPPYIGNEKSNGTIIHVKEKHLCPDELFPDSSKPFWALVVVGAVLVFYSLLVTVALCAYW 610
Query: 177 TNSRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+ +R+LQ MNMTPRRPG TR+ YQPYAPARDFAAYR
Sbjct: 611 IKSKSSRILQSDYMNMTPRRPGPTRRHYQPYAPARDFAAYR 733
>gb|U57754.1|FCU57754 Felis catus T-cell specific surface glycoprotein CD28 mRNA,
complete cds
Length = 688
Score = 305 bits (781), Expect = 2e-81
Identities = 156/221 (70%), Positives = 178/221 (79%), Gaps = 4/221 (1%)
Frame = +1
Query: 1 MTLRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKG 59
M LRLL LALNFF S+QVTENKILVKQ P LVV +NEV+LSC+Y++N +KEFRASLYKG
Sbjct: 1 MILRLL-LALNFFPSIQVTENKILVKQLPRLVVYNNEVNLSCKYTHNFFSKEFRASLYKG 177
Query: 60 VNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMY 119
V+S VEVCV NGN+++QPQF S+ F+CDG NETVTF L NL VN TDIYFCKIE MY
Sbjct: 178 VDSAVEVCVVNGNYSHQPQFYSSTGFDCDGKLGNETVTFYLRNLFVNQTDIYFCKIEVMY 357
Query: 120 PPPYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIW 176
PPPY+DNE+SNGTIIH+KEKHLC Q SP K FWALVVV G+L Y LL TVAL W
Sbjct: 358 PPPYIDNEKSNGTIIHVKEKHLCPAQLSPESSKPFWALVVVGGILGFYSLLATVALGACW 537
Query: 177 TNSRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
++R+R+LQ MNMTPRRPG TR+ YQPYAPARDFAAYR
Sbjct: 538 MKTKRSRILQSDYMNMTPRRPGPTRRHYQPYAPARDFAAYR 660
>gb|AF130427.1|AF130427 Marmota monax CD28 antigen mRNA, complete cds
Length = 707
Score = 305 bits (781), Expect = 2e-81
Identities = 153/220 (69%), Positives = 176/220 (79%), Gaps = 4/220 (1%)
Frame = +2
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALNFF S+QVTE+KILVKQSP L V +NEV+LSC+Y+YNL +KEFRASLYKGV+
Sbjct: 11 LRLLLLALNFFPSIQVTEDKILVKQSPRLEVYNNEVNLSCKYTYNLFSKEFRASLYKGVD 190
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVCV NGNF++Q QF S+ FNCDG NETVTF L NL+VN TDIYFCKIE MYPP
Sbjct: 191 SAVEVCVVNGNFSHQLQFYSHTGFNCDGKLGNETVTFYLRNLYVNQTDIYFCKIEVMYPP 370
Query: 122 PYLDNERSNGTIIHIKEKHLC---HTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PYLDNE+SNGT+IH+KE ++C + PK FW LVV +GVL Y LL T+ LC +WT
Sbjct: 371 PYLDNEKSNGTVIHVKENNICPGVPSPEPPKPFWTLVVFSGVLGIYSLLSTMLLCYLWTK 550
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYRP 218
+R RLLQ MNMTPRRPG +RK YQPYAPARDFAAYRP
Sbjct: 551 RQRTRLLQSDYMNMTPRRPGPSRKHYQPYAPARDFAAYRP 670
>gb|AF259962.1|AF259962 Canis familiaris T-cell costimulatory molecule CD28 (CD28) mRNA,
complete cds
Length = 1110
Score = 301 bits (770), Expect = 3e-80
Identities = 155/221 (70%), Positives = 175/221 (79%), Gaps = 4/221 (1%)
Frame = +2
Query: 1 MTLRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKG 59
M LRLL LALNFF S+QVTENKILVKQ P LVV +NEV+LSC+Y+YNL +KEFRASLYKG
Sbjct: 113 MILRLL-LALNFFPSIQVTENKILVKQLPRLVVYNNEVNLSCKYTYNLFSKEFRASLYKG 289
Query: 60 VNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMY 119
V+S VEVCV NGN+++QPQF S+ F+CDG NETVTF L NL VN TDIYFCKIE MY
Sbjct: 290 VDSAVEVCVVNGNYSHQPQFYSSTGFDCDGKLGNETVTFYLRNLFVNQTDIYFCKIEVMY 469
Query: 120 PPPYLDNERSNGTIIHIKEKHLCHTQ---SSPKLFWALVVVAGVLFCYGLLVTVALCVIW 176
PPPY+ NE+SNGTIIH+KEKHLC + S K FWALVVV VL Y LLVTVALC W
Sbjct: 470 PPPYIGNEKSNGTIIHVKEKHLCPDELFPDSSKPFWALVVVGAVLVFYSLLVTVALCAYW 649
Query: 177 TNSRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+ +R+LQ MNMTPR G TR+ YQPYAPARDFAAYR
Sbjct: 650 IKSKSSRILQSDYMNMTPREAGPTRRHYQPYAPARDFAAYR 772
>gb|AF092739.1|AF092739 Ovis aries T-cell specific surface glycoprotein CD28 precursor
(CD28) mRNA, complete cds
Length = 660
Score = 292 bits (748), Expect = 1e-77
Identities = 151/219 (68%), Positives = 173/219 (78%), Gaps = 4/219 (1%)
Frame = +1
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALNFF S+QV ENKILVKQSP+LVV+ NEV+LSC+Y+YNL +KEFRASLYKG +
Sbjct: 4 LRLL-LALNFFPSIQVAENKILVKQSPMLVVNDNEVNLSCKYTYNLFSKEFRASLYKGAD 180
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVC NGN ++ P +N EFNC NETVTF L +L+VN TDIYFCK+E +YPP
Sbjct: 181 SAVEVCAVNGNHSH-PLQSTNKEFNCTVKVGNETVTFYLQDLYVNQTDIYFCKLEVLYPP 357
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PY+DNE+SNGTIIH+KEKHLC + SP K FWALVVV GVL Y LLVTVALC W
Sbjct: 358 PYIDNEKSNGTIIHVKEKHLCPSPQSPESSKPFWALVVVNGVLVFYSLLVTVALCNCWMK 537
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+RNR+ Q MNMTPRRPG TR+ YQPYAP RDFAAYR
Sbjct: 538 SKRNRMHQSDYMNMTPRRPGPTRRHYQPYAPTRDFAAYR 654
>emb|X93304.1|BTCD28PRT B.taurus mRNA for CD28 protein
Length = 660
Score = 291 bits (745), Expect = 2e-77
Identities = 151/219 (68%), Positives = 174/219 (78%), Gaps = 4/219 (1%)
Frame = +1
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALNFF S+QV ENKILVKQSP+LVV+ NEV+LSC+Y+YNL +KEFRASLYKG +
Sbjct: 4 LRLL-LALNFFPSIQVAENKILVKQSPMLVVNDNEVNLSCKYTYNLFSKEFRASLYKGAD 180
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVC NGN ++ P +N EFNC NETVTF L +L+VN TDIYFCK+E +YPP
Sbjct: 181 SAVEVCAVNGNHSH-PLQSTNKEFNCTVKVGNETVTFYLQDLYVNQTDIYFCKLEVLYPP 357
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PY+DNE+SNGTIIH+KEKHLC + SP K FWALVVV GVL Y LLVTVAL W
Sbjct: 358 PYIDNEKSNGTIIHVKEKHLCPSPRSPESSKPFWALVVVNGVLVFYSLLVTVALSNCWMK 537
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
++RNR+LQ MNMTPRRPG TR+ YQPYAPARDFAAYR
Sbjct: 538 NKRNRMLQSDYMNMTPRRPGPTRRHYQPYAPARDFAAYR 654
>ref|XM_002489.1| Homo sapiens CD28 antigen (Tp44) (CD28), mRNA
Length = 3806
Score = 288 bits (738), Expect = 2e-76
Identities = 149/219 (68%), Positives = 168/219 (76%), Gaps = 4/219 (1%)
Frame = +1
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALN F S+QVT NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++
Sbjct: 226 LRLL-LALNLFPSIQVTGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLD 402
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVCV GN++ Q Q S FNCDG NE+VTF L NL+VN TDIYFCKIE MYPP
Sbjct: 403 SAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPP 582
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PYLDNE+SNGTIIH+K KHLC + P K FW LVVV GVL CY LLVTVA + W
Sbjct: 583 PYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLVTVAFIIFWVR 762
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 763 SKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR 879
>ref|NM_006139.1| Homo sapiens CD28 antigen (Tp44) (CD28), mRNA
Length = 3804
Score = 288 bits (738), Expect = 2e-76
Identities = 149/219 (68%), Positives = 168/219 (76%), Gaps = 4/219 (1%)
Frame = +1
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALN F S+QVT NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++
Sbjct: 226 LRLL-LALNLFPSIQVTGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLD 402
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVCV GN++ Q Q S FNCDG NE+VTF L NL+VN TDIYFCKIE MYPP
Sbjct: 403 SAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPP 582
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PYLDNE+SNGTIIH+K KHLC + P K FW LVVV GVL CY LLVTVA + W
Sbjct: 583 PYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLVTVAFIIFWVR 762
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 763 SKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR 879
>gb|J02988.1|HUMSPTCS Human T-cell-specific homodimer surface protein CD28 mRNA, complete
cds
Length = 1514
Score = 288 bits (738), Expect = 2e-76
Identities = 149/219 (68%), Positives = 168/219 (76%), Gaps = 4/219 (1%)
Frame = +1
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALN F S+QVT NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++
Sbjct: 103 LRLL-LALNLFPSIQVTGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLD 279
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVCV GN++ Q Q S FNCDG NE+VTF L NL+VN TDIYFCKIE MYPP
Sbjct: 280 SAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPP 459
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PYLDNE+SNGTIIH+K KHLC + P K FW LVVV GVL CY LLVTVA + W
Sbjct: 460 PYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLVTVAFIIFWVR 639
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 640 SKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR 756
>gb|AF344852.1|AF344852 Macaca nemestrina CD28 protein precursor, mRNA, complete cds
Length = 668
Score = 288 bits (737), Expect = 2e-76
Identities = 149/219 (68%), Positives = 168/219 (76%), Gaps = 4/219 (1%)
Frame = +2
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALN S+QVT NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++
Sbjct: 5 LRLL-LALNLLPSIQVTGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLD 181
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVCV GN++ Q Q S FNCDG NE+VTF L NL+VN TDIYFCKIE MYPP
Sbjct: 182 SAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPP 361
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PYLDNE+SNGTIIH+K KHLC + P K FWALVVV GVL CY LLVTVA C+ W
Sbjct: 362 PYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWALVVVGGVLACYSLLVTVAFCIFWMR 541
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQPYAP RD AAYR
Sbjct: 542 SKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDSAAYR 658
>gb|AF344842.1|AF344842 Cercocebus torquatus atys CD28 protein mRNA, complete cds
Length = 668
Score = 283 bits (724), Expect = 7e-75
Identities = 147/219 (67%), Positives = 167/219 (76%), Gaps = 4/219 (1%)
Frame = +2
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALN S++VT NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++
Sbjct: 5 LRLL-LALNLLPSIRVTGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLD 181
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVCV GN++ Q Q FNCDG NE+VTF L NL+VN TDIYFCKIE MYPP
Sbjct: 182 SAVEVCVVYGNYSQQLQVYPKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPP 361
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PYLDNE+SNGTIIH+K KHLC + P K FWALVVV GVL CY LLVTVA + W
Sbjct: 362 PYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWALVVVGGVLACYSLLVTVAFRIFWMR 541
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 542 SKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR 658
>gb|AF344855.1|AF344855 Macaca mulatta CD28 protein precursor, mRNA, complete cds
Length = 668
Score = 279 bits (714), Expect = 1e-73
Identities = 147/219 (67%), Positives = 166/219 (75%), Gaps = 4/219 (1%)
Frame = +2
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALN S+QVT NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++
Sbjct: 5 LRLL-LALNLLPSIQVTGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLD 181
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVCV +++ Q Q S EFNCDG NE+VTF L NL+VN TDIYFCKIE MYPP
Sbjct: 182 SAVEVCVVYEDYSQQLQVYSKTEFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPP 361
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PYLDNE+SNGTIIH K KHLC + P K FWALVVV GVL CY LLVTVA + W
Sbjct: 362 PYLDNEKSNGTIIHEKGKHLCPSPLFPGPSKPFWALVVVGGVLACYSLLVTVAFSIFWMR 541
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQP AP RDFAAYR
Sbjct: 542 SKRSRLLHSDYMNMTPRRPGPTRKHYQPCAPPRDFAAYR 658
>gb|AF344837.1|AF344837 Papio cynocephalus anubis CD28 protein precursor, mRNA, complete
cds
Length = 668
Score = 277 bits (708), Expect = 5e-73
Identities = 145/219 (66%), Positives = 166/219 (75%), Gaps = 4/219 (1%)
Frame = +2
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVN 61
LRLL LALN S+QVT NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++
Sbjct: 5 LRLL-LALNLLPSIQVTGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLD 181
Query: 62 SDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
S VEVCV GN++ Q Q S FNC G +E+VTF L N++VN TDIYFCKIE MYPP
Sbjct: 182 SAVEVCVVYGNYSQQLQVYSKTGFNCGGKLGDESVTFYLQNMYVNQTDIYFCKIEVMYPP 361
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTN 178
PYLDNE+SNGTIIH+K KHLC + P K FWALVVV GVL CY LLVTVA +
Sbjct: 362 PYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWALVVVGGVLACYSLLVTVAFSIFCMR 541
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 542 SKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR 658
>gb|AF344845.1|AF344845 Callithrix jacchus CD28 protein mRNA, complete cds
Length = 668
Score = 257 bits (657), Expect = 4e-67
Identities = 134/218 (61%), Positives = 157/218 (71%), Gaps = 3/218 (1%)
Frame = +2
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNS 62
LRLL + F S+Q T KILVKQSP+L N V+L+C+YS NL +++F+ASL+KGV+S
Sbjct: 5 LRLLLVLNLFPSIQATGIKILVKQSPMLEAYDNTVNLTCKYSCNLFSRQFQASLHKGVDS 184
Query: 63 DVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPP 122
VEVC +GN++ Q S FNCDG NE+VT L NL+VN TDIYFCKIE MYPPP
Sbjct: 185 AVEVCAVHGNYSQLLQVHSATGFNCDGKLGNESVTSYLQNLYVNQTDIYFCKIEIMYPPP 364
Query: 123 YLDNERSNGTIIHIKEKHLCHTQS---SPKLFWALVVVAGVLFCYGLLVTVALCVIWTNS 179
YLD+E+SNGTIIH+K KHLC S + FWAL VV GVL Y LLVTVAL V W S
Sbjct: 365 YLDSEKSNGTIIHVKGKHLCPGPSFSGPSQPFWALAVVGGVLASYSLLVTVALSVFWMRS 544
Query: 180 RRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
RR+RLL MNMTPR PG TR+ YQPYAP RDFAAYR
Sbjct: 545 RRSRLLHSDYMNMTPRCPGPTRRHYQPYAPPRDFAAYR 658
>gb|L22178.1|DOGCSP Canis familiaris cell surface protein gene, partial cds
Length = 552
Score = 249 bits (635), Expect = 1e-64
Identities = 125/181 (69%), Positives = 144/181 (79%), Gaps = 4/181 (2%)
Frame = +1
Query: 10 LNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNSDVEVCV 68
LNFF S+QVTENKILVKQ P LVV +NEV+LSC+Y+YNL +KEFRASLYKGV+S VEVCV
Sbjct: 1 LNFFPSIQVTENKILVKQLPRLVVYNNEVNLSCKYTYNLFSKEFRASLYKGVDSAVEVCV 180
Query: 69 GNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNER 128
NGN+++QPQF S+ F+CDG NETVTF L NL VN TDIYFCKIE MYPPPY+ NE+
Sbjct: 181 VNGNYSHQPQFYSSTGFDCDGKLGNETVTFYLRNLFVNQTDIYFCKIEVMYPPPYIGNEK 360
Query: 129 SNGTIIHIKEKHLCHTQ---SSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLL 185
SNGTIIH+KEKHLC + S K FWALVVV VL Y LLVTVALC W S+ +R+L
Sbjct: 361 SNGTIIHVKEKHLCPDELFPDSSKPFWALVVVGAVLVFYSLLVTVALCAYWIKSKSSRIL 540
Query: 186 Q 186
Q
Sbjct: 541 Q 543
>emb|X67915.1|GGCHT28 G.gallus CHT28 mRNA (lymphocyte surface marker, mammalian CD28
homologue)
Length = 845
Score = 197 bits (500), Expect = 6e-49
Identities = 102/206 (49%), Positives = 129/206 (62%), Gaps = 2/206 (0%)
Frame = +1
Query: 14 SVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNF 73
+ VTENKILV Q PLL+V + +L C Y+YN KEFRASL+KG +S VEVC + N
Sbjct: 103 AADVTENKILVAQRPLLIVANRTATLVCNYTYNGTGKEFRASLHKGTDSAVEVCFISWNM 282
Query: 74 TYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTI 133
T + SN EFNC G D + V F LWN+ + TDIYFCKIE MYPPPY+ NE+SNGT+
Sbjct: 283 T-KINSNSNKEFNCRGIHDKDKVIFNLWNMSASQTDIYFCKIEAMYPPPYVYNEKSNGTV 459
Query: 134 IHIKEKHL-CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNM 192
IH++E + S +W +V V G+L Y +L+T + S+RNR Q MNM
Sbjct: 460 IHVRETPIQTQEPESATSYWVMVAVTGLLGFYSMLITAVFIIYRQKSKRNRYRQSDYMNM 639
Query: 193 TPRRPGLTR-KPYQPYAPARDFAAYR 217
TPR P + K Y YAP RD+ AYR
Sbjct: 640 TPRHPPHQKNKGYPSYAPTRDYTAYR 717
>gb|AF225899.1|AF225899 Homo sapiens PAC clone 219d7, complete sequence
Length = 106539
Score = 172 bits (436), Expect = 2e-41
Identities = 82/118 (69%), Positives = 96/118 (80%)
Frame = +3
Query: 20 NKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQF 79
NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++S VEVCV GN++ Q Q
Sbjct: 61662 NKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQV 61841
Query: 80 RSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIK 137
S FNCDG NE+VTF L NL+VN TDIYFCKIE MYPPPYLDNE+SNGTIIH+K
Sbjct: 61842 YSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIHVK 62015
Score = 63.9 bits (154), Expect = 8e-09
Identities = 30/39 (76%), Positives = 32/39 (81%)
Frame = +2
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 69821 SKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR 69937
Score = 49.7 bits (117), Expect = 2e-04
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 132 TIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVT 188
T+ KHLC + P K FW LVVV GVL CY LLVTVA + W L +
Sbjct: 64660 TLFCFSGKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLVTVAFIIFWVREAALLLCNFS 64839
Query: 189 T 189
T
Sbjct: 64840 T 64842
>gb|AF411057.1|AF411057 Homo sapiens clone BAC_22606 CD28 antigen (CD28) gene, exons 1, 2 and
3, and partial cds
Length = 66887
Score = 172 bits (436), Expect = 2e-41
Identities = 82/118 (69%), Positives = 96/118 (80%)
Frame = +2
Query: 20 NKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQF 79
NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++S VEVCV GN++ Q Q
Sbjct: 62507 NKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQV 62686
Query: 80 RSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIK 137
S FNCDG NE+VTF L NL+VN TDIYFCKIE MYPPPYLDNE+SNGTIIH+K
Sbjct: 62687 YSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIHVK 62860
Score = 50.1 bits (118), Expect = 1e-04
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 132 TIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVT 188
T+ KHLC + P K FW LVVV GVL CY LLVTVA + W L +
Sbjct: 65521 TLFCFSGKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLVTVAFIIFWVREAAPLLCNFS 65700
Query: 189 T 189
T
Sbjct: 65701 T 65703
>gb|M37813.1|HUMCD282 Human T-cell membrane glycoprotein CD28 mRNA, exon 2
Length = 542
Score = 172 bits (436), Expect = 2e-41
Identities = 82/118 (69%), Positives = 96/118 (80%)
Frame = +1
Query: 20 NKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQF 79
NKILVKQSP+LV N V+LSC+YSYNL ++EFRASL+KG++S VEVCV GN++ Q Q
Sbjct: 67 NKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQV 246
Query: 80 RSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIK 137
S FNCDG NE+VTF L NL+VN TDIYFCKIE MYPPPYLDNE+SNGTIIH+K
Sbjct: 247 YSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIHVK 420
>gb|M74361.1|MUSCD28A Mouse CD28 mRNA, 3' end
Length = 239
Score = 126 bits (317), Expect = 1e-27
Identities = 60/63 (95%), Positives = 60/63 (95%)
Frame = +1
Query: 156 VVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAA 215
VVAGVLFCYGLLVTVALCVIWTNSRRNRLLQ MNMTPRRPGLTRKPYQPYAPARDFAA
Sbjct: 1 VVAGVLFCYGLLVTVALCVIWTNSRRNRLLQSDYMNMTPRRPGLTRKPYQPYAPARDFAA 180
Query: 216 YRP 218
YRP
Sbjct: 181 YRP 189
>gb|AF222342.1|AF222342 Homo sapiens T-cell specific surface glycoprotein CD28 isoform 2
(CD28) gene, complete cds
Length = 306
Score = 109 bits (272), Expect = 2e-22
Identities = 55/87 (63%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Frame = +1
Query: 134 IHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTM 190
I + KHLC + P K FW LVVV GVL CY LLVTVA + W S+R+RLL M
Sbjct: 40 IQVTGKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYM 219
Query: 191 NMTPRRPGLTRKPYQPYAPARDFAAYR 217
NMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 220 NMTPRRPGPTRKHYQPYAPPRDFAAYR 300
>gb|AF222341.1|AF222341 Homo sapiens T-cell specific surface glycoprotein CD28 isoform 1
(CD28) gene, complete cds
Length = 372
Score = 108 bits (271), Expect = 2e-22
Identities = 54/87 (62%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
Frame = +1
Query: 134 IHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTM 190
+++ KHLC + P K FW LVVV GVL CY LLVTVA + W S+R+RLL M
Sbjct: 106 VNLSWKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYM 285
Query: 191 NMTPRRPGLTRKPYQPYAPARDFAAYR 217
NMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 286 NMTPRRPGPTRKHYQPYAPPRDFAAYR 366
Score = 45.8 bits (107), Expect = 0.002
Identities = 28/42 (66%), Positives = 33/42 (77%), Gaps = 1/42 (2%)
Frame = +1
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLSCRY 43
LRLL LALN F S+QVT NKILVKQSP+LV N V+LS ++
Sbjct: 4 LRLL-LALNLFPSIQVTGNKILVKQSPMLVAYDNAVNLSWKH 126
>ref|NM_031674.1| Rattus norvegicus CD152 antigen (Cd152), mRNA
Length = 724
Score = 84.0 bits (206), Expect = 8e-15
Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
Frame = +1
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNS 62
L LLF+ + ++QVT+ +++ S S C Y+ + E R ++ + N
Sbjct: 76 LSLLFIPIFSEAIQVTQPSVVLASS------HGVASFPCEYASSHNTDEVRVTVLRQTND 237
Query: 63 DV-EVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
V EVC FT + + C G F+ V + L T +YFCK+E MYPP
Sbjct: 238 QVTEVCATT--FTVKNTLGFLDDPFCSGTFNESRVNLTIQGLRAADTGLYFCKVELMYPP 411
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRR 181
PY NGT I++ + C S L W L V+ LF Y LVT A+ + T +R
Sbjct: 412 PYFVG-MGNGTQIYVIDPEPC--PDSDFLLWILAAVSSGLFFYSFLVT-AVSLNRTLKKR 579
Query: 182 NRLLQVTTMNMTPRRPGLTRKPYQPY 207
+ L + M P P K +QPY
Sbjct: 580 SPLTTGVYVKMPPTEPE-CEKQFQPY 654
>gb|U37121.1|RNU37121 Rattus norvegicus cytotoxic T-lymphocyte associated protein-4
precursor (CTLA-4) mRNA, complete cds
Length = 724
Score = 84.0 bits (206), Expect = 8e-15
Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
Frame = +1
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNS 62
L LLF+ + ++QVT+ +++ S S C Y+ + E R ++ + N
Sbjct: 76 LSLLFIPIFSEAIQVTQPSVVLASS------HGVASFPCEYASSHNTDEVRVTVLRQTND 237
Query: 63 DV-EVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
V EVC FT + + C G F+ V + L T +YFCK+E MYPP
Sbjct: 238 QVTEVCATT--FTVKNTLGFLDDPFCSGTFNESRVNLTIQGLRAADTGLYFCKVELMYPP 411
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRR 181
PY NGT I++ + C S L W L V+ LF Y LVT A+ + T +R
Sbjct: 412 PYFVG-MGNGTQIYVIDPEPC--PDSDFLLWILAAVSSGLFFYSFLVT-AVSLNRTLKKR 579
Query: 182 NRLLQVTTMNMTPRRPGLTRKPYQPY 207
+ L + M P P K +QPY
Sbjct: 580 SPLTTGVYVKMPPTEPE-CEKQFQPY 654
>gb|AF092740.1|AF092740 Ovis aries cytotoxic T-lymphocyte-associated protein 4 (CTLA-4)
mRNA, complete cds
Length = 666
Score = 75.9 bits (185), Expect = 2e-12
Identities = 57/186 (30%), Positives = 84/186 (44%), Gaps = 2/186 (1%)
Frame = +1
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q P+++ S V S +C Y + A E R ++ + V EVC G + + +
Sbjct: 112 VTQPPVVLASSRGVASFTCEYESSGKADEVRVTVLRKAGIQVTEVCAGT--YMVEDELTF 285
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ +C G V + L T +Y CK+E MYPPPY E NGT I++ +
Sbjct: 286 LDDSSCIGTSRGNKVNLTIQGLRAMDTGLYVCKVELMYPPPYYMGE-GNGTQIYVIDPEP 462
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 463 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CE 630
Query: 202 KPYQPY 207
K +QPY
Sbjct: 631 KQFQPY 648
>emb|X93305.1|BTCTLA4PT B.taurus mRNA for CTLA-4 protein
Length = 666
Score = 75.9 bits (185), Expect = 2e-12
Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 2/186 (1%)
Frame = +1
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q P+++ S V S SC Y + A E R ++ + S V EVC G + + +
Sbjct: 112 VTQPPVVLASSRGVASFSCEYESSGKADEVRVTVLREAGSQVTEVCAGT--YMVEDELTF 285
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ C G V + L T +Y CK+E MYPPPY NGT I++ +
Sbjct: 286 LDDSTCIGTSRGNKVNLTIQGLRAMDTGLYVCKVELMYPPPYYVG-IGNGTQIYVIDPEP 462
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 463 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CE 630
Query: 202 KPYQPY 207
K +QPY
Sbjct: 631 KQFQPY 648
>ref|NM_009843.1| Mus musculus CD152 antigen (Cd152), mRNA
Length = 1890
Score = 74.7 bits (182), Expect = 5e-12
Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 1/206 (0%)
Frame = +1
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNS 62
L LLF+ + ++QVT+ +++ S S C YS + E R ++ + N
Sbjct: 133 LTLLFIPVFSEAIQVTQPSVVLASS------HGVASFPCEYSPSHNTDEVRVTVLRQTND 294
Query: 63 DV-EVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
+ EVC FT + C G F+ V + L T +Y CK+E MYPP
Sbjct: 295 QMTEVCATT--FTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCKVELMYPP 468
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRR 181
PY NGT I++ + C S L W LV V+ LF Y LV+ A+ + +R
Sbjct: 469 PYFVG-MGNGTQIYVIDPEPC--PDSDFLLWILVAVSLGLFFYSFLVS-AVSLSKMLKKR 636
Query: 182 NRLLQVTTMNMTPRRPGLTRKPYQPY 207
+ L + M P P K +QPY
Sbjct: 637 SPLTTGVYVKMPPTEPE-CEKQFQPY 711
>emb|X05719.1|MMCTLA4 Mouse mRNA for immunoglobulin superfamiliy member CTLA-4
Length = 1890
Score = 74.7 bits (182), Expect = 5e-12
Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 1/206 (0%)
Frame = +1
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNS 62
L LLF+ + ++QVT+ +++ S S C YS + E R ++ + N
Sbjct: 133 LTLLFIPVFSEAIQVTQPSVVLASS------HGVASFPCEYSPSHNTDEVRVTVLRQTND 294
Query: 63 DV-EVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
+ EVC FT + C G F+ V + L T +Y CK+E MYPP
Sbjct: 295 QMTEVCATT--FTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCKVELMYPP 468
Query: 122 PYLDNERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRR 181
PY NGT I++ + C S L W LV V+ LF Y LV+ A+ + +R
Sbjct: 469 PYFVG-MGNGTQIYVIDPEPC--PDSDFLLWILVAVSLGLFFYSFLVS-AVSLSKMLKKR 636
Query: 182 NRLLQVTTMNMTPRRPGLTRKPYQPY 207
+ L + M P P K +QPY
Sbjct: 637 SPLTTGVYVKMPPTEPE-CEKQFQPY 711
>gb|AF130428.1|AF130428 Marmota monax cytotoxic T-lymphocyte associated antigen 4 (CTLA-4)
mRNA, complete cds
Length = 674
Score = 74.3 bits (181), Expect = 6e-12
Identities = 59/200 (29%), Positives = 88/200 (43%), Gaps = 2/200 (1%)
Frame = +1
Query: 10 LNFFSVQVTENKILVKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVC 67
L+ + + + V Q +++ S V S C Y+ A E R ++ + + S V EVC
Sbjct: 76 LSLLFIPIFSKAMHVAQPAVVLASSRGVASFVCEYAAFHKATEVRVTVLRQIASQVTEVC 255
Query: 68 VGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNE 127
+T + + + +C G V + L T +Y CK+E MYPPPY
Sbjct: 256 ATT--YTVENELTFLDDSSCTGTSSGNQVNLTIQGLRTADTGLYICKVELMYPPPYYMG- 426
Query: 128 RSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQV 187
NGT I++ E C S L W L V+ LF Y LVT A+ + +R+ L
Sbjct: 427 LGNGTQIYVIEPEPC--PDSDFLLWILAAVSSGLFFYSFLVT-AVSLSKMLKKRSPLTTG 597
Query: 188 TTMNMTPRRPGLTRKPYQPY 207
+ M P P K +QPY
Sbjct: 598 VYVKMPPTEPE-CEKQFQPY 654
>dbj|D49844.1|RABCTLAD Rabbit mRNA for CTLA-4 (cytotoxic T lymphocyte-associated
molecule-4), complete cds
Length = 725
Score = 73.9 bits (180), Expect = 8e-12
Identities = 57/191 (29%), Positives = 85/191 (43%), Gaps = 3/191 (1%)
Frame = +1
Query: 20 NKILVKQSPLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQ 76
+K L P +V+ S+ S C Y+ + A E R ++ + NS + EVC +T +
Sbjct: 151 SKALHVSQPAVVLASSRGVASFVCEYASSHKATEVRVTVLRQANSQMTEVCAMT--YTVE 324
Query: 77 PQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHI 136
+ + C G V + L T +Y CK+E MYPPPY NGT I++
Sbjct: 325 NELTFIDDSTCTGISHGNKVNLTIQGLSAMDTGLYICKVELMYPPPYYVG-MGNGTQIYV 501
Query: 137 KEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRR 196
E C S L W L ++ LF Y L+T A+ + +R+ L + M P
Sbjct: 502 IEPEPC--PDSDFLLWILAAISSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTE 672
Query: 197 PGLTRKPYQPY 207
P K +QPY
Sbjct: 673 PE-CEKQFQPY 702
>gb|AF215893.1|AF215893 Canis familiaris cytotoxic T-lymphocyte antigen 4 mRNA, complete
cds
Length = 775
Score = 71.6 bits (174), Expect = 4e-11
Identities = 55/186 (29%), Positives = 81/186 (42%), Gaps = 2/186 (1%)
Frame = +1
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q +++ S V S C Y + A E R ++ + S + EVC +T + +
Sbjct: 160 VAQPAVVLASSRGVASFVCEYGSSGNAAEVRVTVLRQAGSQMTEVCAAT--YTVEDELAF 333
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ C G V + L T +Y CK+E MYPPPY NGT I++ +
Sbjct: 334 LDDSTCTGTSSGNKVNLTIQGLRAMDTGLYICKVELMYPPPYYVG-MGNGTQIYVIDPEP 510
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 511 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CE 678
Query: 202 KPYQPY 207
K +QPY
Sbjct: 679 KQFQPY 696
>gb|AF154843.1|AF154843 Canis familiaris costimulatory molecule B7 receptor CD152 (CD152)
mRNA, complete cds
Length = 1856
Score = 71.6 bits (174), Expect = 4e-11
Identities = 55/186 (29%), Positives = 81/186 (42%), Gaps = 2/186 (1%)
Frame = +3
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q +++ S V S C Y + A E R ++ + S + EVC +T + +
Sbjct: 177 VAQPAVVLASSRGVASFVCEYGSSGNAAEVRVTVLRQAGSQMTEVCAAT--YTVEDELAF 350
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ C G V + L T +Y CK+E MYPPPY NGT I++ +
Sbjct: 351 LDDSTCTGTSSGNKVNLTIQGLRAMDTGLYICKVELMYPPPYYVG-MGNGTQIYVIDPEP 527
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 528 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CE 695
Query: 202 KPYQPY 207
K +QPY
Sbjct: 696 KQFQPY 713
>gb|AF154844.1|AF154844 Felis catus costimulatory molecule B7 receptor CD152 (CD152) mRNA,
complete cds
Length = 1883
Score = 70.9 bits (172), Expect = 7e-11
Identities = 55/186 (29%), Positives = 81/186 (42%), Gaps = 2/186 (1%)
Frame = +3
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q +++ S V S C Y + A E R ++ + S + EVC +T + +
Sbjct: 186 VAQPAVVLASSRGVASFVCEYGSSGNAAEVRVTVLRQTGSQMTEVCAAT--YTVENELAF 359
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ C G V + L T +Y CK+E MYPPPY NGT I++ +
Sbjct: 360 LDDSTCTGISSGNKVNLTIQGLRAMDTGLYICKVELMYPPPYYAG-MGNGTQIYVIDPEP 536
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 537 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CE 704
Query: 202 KPYQPY 207
K +QPY
Sbjct: 705 KQFQPY 722
>dbj|AB029395.1|AB029395 Felis catus CTLA4 mRNA for cytotoxic T-lymphocyte-associated 4,
complete cds
Length = 1818
Score = 70.9 bits (172), Expect = 7e-11
Identities = 55/186 (29%), Positives = 81/186 (42%), Gaps = 2/186 (1%)
Frame = +1
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q +++ S V S C Y + A E R ++ + S + EVC +T + +
Sbjct: 166 VAQPAVVLASSRGVASFVCEYGSSGNAAEVRVTVLRQTGSQMTEVCAAT--YTVENELAF 339
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ C G V + L T +Y CK+E MYPPPY NGT I++ +
Sbjct: 340 LDDSTCTGISSGNKVNLTIQGLRAMDTGLYICKVELMYPPPYYAG-MGNGTQIYVIDPEP 516
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 517 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CE 684
Query: 202 KPYQPY 207
K +QPY
Sbjct: 685 KQFQPY 702
>gb|AF153202.1|AF153202 Felis catus cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)
mRNA, complete cds
Length = 741
Score = 70.9 bits (172), Expect = 7e-11
Identities = 55/186 (29%), Positives = 81/186 (42%), Gaps = 2/186 (1%)
Frame = +3
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q +++ S V S C Y + A E R ++ + S + EVC +T + +
Sbjct: 144 VAQPAVVLASSRGVASFVCEYGSSGNAAEVRVTVLRQAGSQMTEVCAVT--YTVEDELAF 317
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ C G V + L T +Y CK+E MYPPPY NGT I++ +
Sbjct: 318 LDDSTCTGTSSGNKVNLTIQGLRAMDTGLYICKVELMYPPPYYVG-MGNGTQIYVIDPEP 494
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 495 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKVLKKRSPLTTGVYVKMPPTEPE-CE 662
Query: 202 KPYQPY 207
K +QPY
Sbjct: 663 KQFQPY 680
>gb|AF170725.1|AF170725 Felis catus CTLA-4 protein (CTLA-4) mRNA, complete cds
Length = 749
Score = 70.9 bits (172), Expect = 7e-11
Identities = 55/186 (29%), Positives = 81/186 (42%), Gaps = 2/186 (1%)
Frame = +3
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q +++ S V S C Y + A E R ++ + S + EVC +T + +
Sbjct: 144 VAQPAVVLASSRGVASFVCEYGSSGNAAEVRVTVLRQTGSQMTEVCAAT--YTVENELAF 317
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ C G V + L T +Y CK+E MYPPPY NGT I++ +
Sbjct: 318 LDDSTCTGISSGNKVNLTIQGLRAMDTGLYICKVELMYPPPYYAG-MGNGTQIYVIDPEP 494
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 495 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CE 662
Query: 202 KPYQPY 207
K +QPY
Sbjct: 663 KQFQPY 680
>emb|AJ295273.1|HSA295273 Homo sapiens mRNA for putative CD28 protein (CD28 gene)
Length = 286
Score = 63.9 bits (154), Expect(2) = 7e-11
Identities = 30/39 (76%), Positives = 32/39 (81%)
Frame = +2
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 164 SKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR 280
Score = 45.1 bits (105), Expect = 0.004
Identities = 28/39 (71%), Positives = 31/39 (78%), Gaps = 1/39 (2%)
Frame = +1
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLS 40
LRLL LALN F S+QVT NKILVKQSP+LV N V+LS
Sbjct: 4 LRLL-LALNLFPSIQVTGNKILVKQSPMLVAYDNAVNLS 117
Score = 26.9 bits (58), Expect(2) = 7e-11
Identities = 10/12 (83%), Positives = 12/12 (99%)
Frame = +1
Query: 126 NERSNGTIIHIK 137
NE+SNGTIIH+K
Sbjct: 121 NEKSNGTIIHVK 156
>gb|AF143204.1|AF143204 Canis familiaris breed beagle T-cell costimulatory molecule
(CTLA-4) mRNA, complete cds
Length = 740
Score = 70.5 bits (171), Expect = 9e-11
Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 3/183 (1%)
Frame = +3
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y + A E R ++ + S + EVC +T + + +
Sbjct: 153 PAVVLASSRGVASFVCEYGSSGNAAEVRVTMLRQAGSQMTEVCAAT--YTVEDELAFLDD 326
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHT 144
C G V + L T +Y CK+E MYPPPY NGT I++ + C
Sbjct: 327 STCTGTSSGNKVNLTIQGLRAMGTGLYICKVELMYPPPYYVG-MGNGTQIYVIDPEPC-- 497
Query: 145 QSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTRKPY 204
S L W L V+ LF Y L+T A+ + +R+ L + M P P K +
Sbjct: 498 PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTGPE-CEKQF 671
Query: 205 QPY 207
QPY
Sbjct: 672 QPY 680
>gb|AF344834.1|AF344834 Aotus trivirgatus CD152 protein precursor (CTLA-4) mRNA, complete
cds
Length = 890
Score = 70.1 bits (170), Expect = 1e-10
Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 2/195 (1%)
Frame = +2
Query: 15 VQVTENKILVKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGN 72
+ V N + V Q +++ S + S C Y+ E R ++ + +S V EVC G
Sbjct: 191 ILVFSNAMHVAQPAVVLASSRGIASFVCEYASPGNTTEIRVTVLRQTDSQVTEVCAGTYI 370
Query: 73 FTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGT 132
+ F ++ C G F V + L +Y CK+E MYPPPY NGT
Sbjct: 371 MGNELTFLDDSI--CMGTFSGNKVNLTIQGLRAMDMGLYICKVELMYPPPYY-MSIGNGT 541
Query: 133 IIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNM 192
I++ + C S L W L V+ LF Y L+T A+ + +R+ L + M
Sbjct: 542 QIYVIDPEPC--PDSDFLLWILAAVSSGLFFYSFLLT-AVSLSKMLKKRSPLTTGVYVKM 712
Query: 193 TPRRPGLTRKPYQPY 207
P P K +QPY
Sbjct: 713 PPTEPE-CEKQFQPY 754
>gb|AF220248.1|AF220248 Sus scrofa cytotoxic T lymphocyte-associated protein 4 precursor
(CTLA4) mRNA, complete cds
Length = 695
Score = 69.3 bits (168), Expect = 2e-10
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 2/186 (1%)
Frame = +2
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q +++ +S V S C Y A E R ++ + S + EVC +T + +
Sbjct: 131 VAQPAVVLANSRGVASFVCEYGSAGKAAEVRVTVLRRAGSQMTEVCAAT--YTVEDELTF 304
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ C G V + L T +Y CK+E +YPPPY NGT I++ +
Sbjct: 305 LDDSTCTGTSTENKVNLTIQGLRAVDTGLYICKVELLYPPPYYVG-MGNGTQIYVIDPEP 481
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 482 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CE 649
Query: 202 KPYQPY 207
K +QPY
Sbjct: 650 KQFQPY 667
>gb|AF281633.1|AF281633 Sus scrofa cytotoxic T-lymphocyte-associated antigen 4 (CTLA4)
mRNA, complete cds
Length = 672
Score = 69.3 bits (168), Expect = 2e-10
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 2/186 (1%)
Frame = +1
Query: 24 VKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRS 81
V Q +++ +S V S C Y A E R ++ + S + EVC +T + +
Sbjct: 118 VAQPAVVLANSRGVASFVCEYGSAGKAAEVRVTVLRRAGSQMTEVCAAT--YTVEDELTF 291
Query: 82 NAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+ C G V + L T +Y CK+E +YPPPY NGT I++ +
Sbjct: 292 LDDSTCTGTSTENKVNLTIQGLRAVDTGLYICKVELLYPPPYYVG-MGNGTQIYVIDPEP 468
Query: 142 CHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTR 201
C S L W L V+ LF Y L+T A+ + +R+ L + M P P
Sbjct: 469 C--PDSDFLLWILAAVSSGLFFYSFLIT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CE 636
Query: 202 KPYQPY 207
K +QPY
Sbjct: 637 KQFQPY 654
>gb|AF344854.1|AF344854 Macaca nemestrina CD152 protein precursor (CTLA-4) mRNA, complete
cds
Length = 915
Score = 68.6 bits (166), Expect = 3e-10
Identities = 57/202 (28%), Positives = 87/202 (42%), Gaps = 2/202 (0%)
Frame = +2
Query: 8 LALNFFSVQVTENKILVKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-E 65
L + + V + V Q +++ +S + S C Y+ A E R ++ + +S V E
Sbjct: 170 LLFSLLFIPVFSKAMHVAQPAVVLANSRGIASFVCEYASPGKATEVRVTVLRQADSQVTE 349
Query: 66 VCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLD 125
VC + F ++ C G V + L T +Y CK+E MYPPPY
Sbjct: 350 VCAATYMMGNELTFLDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYM 523
Query: 126 NERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLL 185
NGT I++ + C S L W L V+ LF Y L+T A+ + +R+ L
Sbjct: 524 G-IGNGTQIYVIDPEPC--PDSDFLLWILAAVSSGLFFYSFLLT-AVSLSKMLKKRSPLT 691
Query: 186 QVTTMNMTPRRPGLTRKPYQPY 207
+ M P P K +QPY
Sbjct: 692 TGVYVKMPPTEPE-CEKQFQPY 754
>gb|AF344846.1|AF344846 Macaca mulatta CD152 protein precursor (CTLA-4) mRNA, complete cds
Length = 915
Score = 68.6 bits (166), Expect = 3e-10
Identities = 57/202 (28%), Positives = 87/202 (42%), Gaps = 2/202 (0%)
Frame = +2
Query: 8 LALNFFSVQVTENKILVKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-E 65
L + + V + V Q +++ +S + S C Y+ A E R ++ + +S V E
Sbjct: 170 LLFSLLFIPVFSKAMHVAQPAVVLANSRGIASFVCEYASPGKATEVRVTVLRQADSQVTE 349
Query: 66 VCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLD 125
VC + F ++ C G V + L T +Y CK+E MYPPPY
Sbjct: 350 VCAATYMMGNELTFLDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYM 523
Query: 126 NERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLL 185
NGT I++ + C S L W L V+ LF Y L+T A+ + +R+ L
Sbjct: 524 G-IGNGTQIYVIDPEPC--PDSDFLLWILAAVSSGLFFYSFLLT-AVSLSKMLKKRSPLT 691
Query: 186 QVTTMNMTPRRPGLTRKPYQPY 207
+ M P P K +QPY
Sbjct: 692 TGVYVKMPPTEPE-CEKQFQPY 754
>gb|AF344838.1|AF344838 Papio cynocephalus anubis CD152 protein precursor (CTLA-4) mRNA,
complete cds
Length = 915
Score = 68.6 bits (166), Expect = 3e-10
Identities = 57/202 (28%), Positives = 87/202 (42%), Gaps = 2/202 (0%)
Frame = +2
Query: 8 LALNFFSVQVTENKILVKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-E 65
L + + V + V Q +++ +S + S C Y+ A E R ++ + +S V E
Sbjct: 170 LLFSLLFIPVFSKAMHVAQPAVVLANSRGIASFVCEYASPGKATEVRVTVLRQADSQVTE 349
Query: 66 VCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLD 125
VC + F ++ C G V + L T +Y CK+E MYPPPY
Sbjct: 350 VCAATYMMGNELTFLDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYM 523
Query: 126 NERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLL 185
NGT I++ + C S L W L V+ LF Y L+T A+ + +R+ L
Sbjct: 524 G-IGNGTQIYVIDPEPC--PDSDFLLWILAAVSSGLFFYSFLLT-AVSLSKMLKKRSPLT 691
Query: 186 QVTTMNMTPRRPGLTRKPYQPY 207
+ M P P K +QPY
Sbjct: 692 TGVYVKMPPTEPE-CEKQFQPY 754
>gb|AF344848.1|AF344848 Cercocebus torquatus atys clone MNCTLA4 CD152 protein (CTLA-4)
mRNA, complete cds
Length = 1025
Score = 68.6 bits (166), Expect = 3e-10
Identities = 57/202 (28%), Positives = 87/202 (42%), Gaps = 2/202 (0%)
Frame = +1
Query: 8 LALNFFSVQVTENKILVKQSPLLVVDSNEV-SLSCRYSYNLLAKEFRASLYKGVNSDV-E 65
L + + V + V Q +++ +S + S C Y+ A E R ++ + +S V E
Sbjct: 232 LLFSLLFIPVFSKAMHVAQPAVVLANSRGIASFVCEYASPGKATEVRVTVLRQADSQVTE 411
Query: 66 VCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLD 125
VC + F ++ C G V + L T +Y CK+E MYPPPY
Sbjct: 412 VCAATYMMGNELTFLDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYM 585
Query: 126 NERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLL 185
NGT I++ + C S L W L V+ LF Y L+T A+ + +R+ L
Sbjct: 586 G-IGNGTQIYVIDPEPC--PDSDFLLWILAAVSSGLFFYSFLLT-AVSLSKMLKKRSPLT 753
Query: 186 QVTTMNMTPRRPGLTRKPYQPY 207
+ M P P K +QPY
Sbjct: 754 TGVYVKMPPTEPE-CEKQFQPY 816
>gb|AF414120.1|AF414120 Homo sapiens CTLA4 (CTLA4) mRNA, complete cds
Length = 2025
Score = 66.6 bits (161), Expect = 1e-09
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 3/183 (1%)
Frame = +3
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y+ A E R ++ + +S V EVC + F ++
Sbjct: 282 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI 461
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHT 144
C G V + L T +Y CK+E MYPPPY NGT I++ + C
Sbjct: 462 --CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIDPEPC-- 626
Query: 145 QSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTRKPY 204
S L W L V+ LF Y L+T A+ + +R+ L + M P P K +
Sbjct: 627 PDSDFLLWILAAVSSGLFFYSFLLT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CEKQF 800
Query: 205 QPY 207
QPY
Sbjct: 801 QPY 809
>ref|NM_005214.1| Homo sapiens cytotoxic T-lymphocyte-associated protein 4 (CTLA4),
mRNA
Length = 672
Score = 65.9 bits (159), Expect = 2e-09
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 3/183 (1%)
Frame = +1
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y+ A E R ++ + +S V EVC + F ++
Sbjct: 127 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMTGNELTFLDDSI 306
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHT 144
C G V + L T +Y CK+E MYPPPY NGT I++ + C
Sbjct: 307 --CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIDPEPC-- 471
Query: 145 QSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTRKPY 204
S L W L V+ LF Y L+T A+ + +R+ L + M P P K +
Sbjct: 472 PDSDFLLWILAAVSSGLFFYSFLLT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CEKQF 645
Query: 205 QPY 207
QPY
Sbjct: 646 QPY 654
>gb|L15006.1|HUMCTLA4B Homo sapiens Ig superfamily CTLA-4 mRNA, complete cds
Length = 672
Score = 65.9 bits (159), Expect = 2e-09
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 3/183 (1%)
Frame = +1
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y+ A E R ++ + +S V EVC + F ++
Sbjct: 127 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMTGNELTFLDDSI 306
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHT 144
C G V + L T +Y CK+E MYPPPY NGT I++ + C
Sbjct: 307 --CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIDPEPC-- 471
Query: 145 QSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTRKPY 204
S L W L V+ LF Y L+T A+ + +R+ L + M P P K +
Sbjct: 472 PDSDFLLWILAAVSSGLFFYSFLLT-AVSLSKMLKKRSPLTTGVYVKMPPTEPE-CEKQF 645
Query: 205 QPY 207
QPY
Sbjct: 646 QPY 654
>gb|M37815.1|HUMCD284 Human T-cell membrane glycoprotein CD28 mRNA, exon 4
Length = 3230
Score = 63.9 bits (154), Expect = 8e-09
Identities = 30/39 (76%), Positives = 32/39 (81%)
Frame = +2
Query: 179 SRRNRLLQVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
S+R+RLL MNMTPRRPG TRK YQPYAP RDFAAYR
Sbjct: 128 SKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR 244
>gb|U90271.1|U90271 Rattus norvegicus CTLA-4 mRNA, complete cds
Length = 614
Score = 62.0 bits (149), Expect = 3e-08
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Frame = +1
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNS 62
L LLF+ + ++QVT+ +++ S S C Y+ + E R ++ + N
Sbjct: 76 LSLLFIPIFSEAIQVTQPSVVLASS------HGVASFPCEYASSHNTDEVRVTVLRQTND 237
Query: 63 DV-EVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPP 121
V EVC FT + + C G F+ V + L T +YFCK+E MYPP
Sbjct: 238 QVTEVCATT--FTVKNTLGFLDDPFCSGTFNESRVNLTIQGLRAADTGLYFCKVELMYPP 411
Query: 122 PYLDNERSNGTIIHI--KEK 139
PY NGT I++ KEK
Sbjct: 412 PYFVG-MGNGTQIYVIAKEK 468
>gb|AF142145.1|AF142145 Mus musculus cytotoxic T-lymphocyte associated molecule 4 (Ctla4)
gene, complete cds
Length = 10640
Score = 52.4 bits (124), Expect = 3e-05
Identities = 37/128 (28%), Positives = 56/128 (42%), Gaps = 1/128 (0%)
Frame = +2
Query: 10 LNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCV 68
L+ ++QVT+ +++ S S C YS + E R ++ + N + EVC
Sbjct: 4289 LSMSAIQVTQPSVVLASS------HGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCA 4450
Query: 69 GNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNER 128
FT + C G F+ V + L T +Y CK+E MYPPPY
Sbjct: 4451 TT--FTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCKVELMYPPPYFVG-M 4621
Query: 129 SNGTIIHI 136
NGT I++
Sbjct: 4622 GNGTQIYV 4645
>gb|AF218312.1|AF218312 Synthetic construct inducible costimulator precursor (ICOS) mRNA,
complete cds
Length = 621
Score = 50.4 bits (119), Expect = 1e-04
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +3
Query: 29 LLVVDSNEVSLSCRYSYNLLAKEFRASLYKG--VNSDVEVCVGNGNFTYQPQFRSNAEFN 86
+ + + V + C+Y + ++F+ L KG + D+ G+GN +
Sbjct: 102 MFIFHNGGVQILCKYPD--IVQQFKMQLLKGGQILCDLTKTKGSGNTVSIKSLKF----- 260
Query: 87 CDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
C N +V+F L+NL +H + YFC + PPP+ G +HI E LC
Sbjct: 261 CHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPF--KVTLTGGYLHIYESQLC 422
>emb|AJ277832.1|HSA277832 Homo sapiens mRNA for inducible T-cell co-stimulator (ICOS gene)
Length = 2641
Score = 50.4 bits (119), Expect = 1e-04
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +2
Query: 29 LLVVDSNEVSLSCRYSYNLLAKEFRASLYKG--VNSDVEVCVGNGNFTYQPQFRSNAEFN 86
+ + + V + C+Y + ++F+ L KG + D+ G+GN +
Sbjct: 155 MFIFHNGGVQILCKYPD--IVQQFKMQLLKGGQILCDLTKTKGSGNTVSIKSLKF----- 313
Query: 87 CDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
C N +V+F L+NL +H + YFC + PPP+ G +HI E LC
Sbjct: 314 CHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPF--KVTLTGGYLHIYESQLC 475
>ref|NM_012092.1| Homo sapiens inducible T-cell co-stimulator (ICOS), mRNA
Length = 2610
Score = 50.4 bits (119), Expect = 1e-04
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +2
Query: 29 LLVVDSNEVSLSCRYSYNLLAKEFRASLYKG--VNSDVEVCVGNGNFTYQPQFRSNAEFN 86
+ + + V + C+Y + ++F+ L KG + D+ G+GN +
Sbjct: 113 MFIFHNGGVQILCKYPD--IVQQFKMQLLKGGQILCDLTKTKGSGNTVSIKSLKF----- 271
Query: 87 CDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
C N +V+F L+NL +H + YFC + PPP+ G +HI E LC
Sbjct: 272 CHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPF--KVTLTGGYLHIYESQLC 433
>dbj|AB023135.1|AB023135 Homo sapiens mRNA for activation-inducible lymphocyte
immunomediatory molecule AILIM, complete cds
Length = 2610
Score = 50.4 bits (119), Expect = 1e-04
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +2
Query: 29 LLVVDSNEVSLSCRYSYNLLAKEFRASLYKG--VNSDVEVCVGNGNFTYQPQFRSNAEFN 86
+ + + V + C+Y + ++F+ L KG + D+ G+GN +
Sbjct: 113 MFIFHNGGVQILCKYPD--IVQQFKMQLLKGGQILCDLTKTKGSGNTVSIKSLKF----- 271
Query: 87 CDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
C N +V+F L+NL +H + YFC + PPP+ G +HI E LC
Sbjct: 272 CHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPF--KVTLTGGYLHIYESQLC 433
>ref|XM_087025.1| Homo sapiens inducible T-cell co-stimulator (ICOS), mRNA
Length = 2638
Score = 50.4 bits (119), Expect = 1e-04
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +2
Query: 29 LLVVDSNEVSLSCRYSYNLLAKEFRASLYKG--VNSDVEVCVGNGNFTYQPQFRSNAEFN 86
+ + + V + C+Y + ++F+ L KG + D+ G+GN +
Sbjct: 155 MFIFHNGGVQILCKYPD--IVQQFKMQLLKGGQILCDLTKTKGSGNTVSIKSLKF----- 313
Query: 87 CDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
C N +V+F L+NL +H + YFC + PPP+ G +HI E LC
Sbjct: 314 CHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPF--KVTLTGGYLHIYESQLC 475
>gb|M37814.1|HUMCD283 Human T-cell membrane glycoprotein CD28 mRNA, exon 3
Length = 467
Score = 49.7 bits (117), Expect = 2e-04
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 132 TIIHIKEKHLCHTQSSP---KLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVT 188
T+ KHLC + P K FW LVVV GVL CY LLVTVA + W L +
Sbjct: 108 TLFCFSGKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLVTVAFIIFWVREAALLLCNFS 287
Query: 189 T 189
T
Sbjct: 288 T 290
>gb|AC010138.6| Homo sapiens chromosome 2 clone RP11-175H4, complete sequence
Length = 160970
Score = 48.1 bits (113), Expect = 5e-04
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +1
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y+ A E R ++ + +S V EVC + F ++
Sbjct: 101077 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI 101256
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHT 144
C G V + L T +Y CK+E MYPPPY NGT I++ + T
Sbjct: 101257 --CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIGEQSHFT 101427
Query: 145 QSSP 148
+ +P
Sbjct: 101428 ELTP 101439
>gb|AF225900.1|AF225900 Homo sapiens PAC clone p61e2, complete sequence
Length = 94645
Score = 48.1 bits (113), Expect = 5e-04
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +3
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y+ A E R ++ + +S V EVC + F ++
Sbjct: 71937 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI 72116
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHT 144
C G V + L T +Y CK+E MYPPPY NGT I++ + T
Sbjct: 72117 --CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIGEQSHFT 72287
Query: 145 QSSP 148
+ +P
Sbjct: 72288 ELTP 72299
>gb|AF411058.1|AF411058 Homo sapiens clone BAC_22700 cytotoxic T-lymphocyte-associated protein
4 (CTLA4) and inducible T-cell co-stimulator (ICOS) genes,
complete cds; and endogenous virus HERV-H, partial
sequence
Length = 181654
Score = 48.1 bits (113), Expect = 5e-04
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +3
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y+ A E R ++ + +S V EVC + F ++
Sbjct: 87165 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI 87344
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHT 144
C G V + L T +Y CK+E MYPPPY NGT I++ + T
Sbjct: 87345 --CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIGEQSHFT 87515
Query: 145 QSSP 148
+ +P
Sbjct: 87516 ELTP 87527
Score = 47.0 bits (110), Expect = 0.001
Identities = 38/150 (25%), Positives = 66/150 (43%), Gaps = 2/150 (1%)
Frame = +3
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKG--V 60
+ LL L+F++ ++ + + + + V + C+Y + ++F+ L KG +
Sbjct: 172140 MSLLLCFLSFYAGEINGSA----NYEMFIFHNGGVQILCKYPD--IVQQFKMQLLKGGQI 172301
Query: 61 NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 120
D+ G+GN + C N +V+F L+NL +H + YFC + P
Sbjct: 172302 LCDLTKTKGSGNTVSIKSLKF-----CHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDP 172466
Query: 121 PPYLDNERSNGTIIHIKEKHLCHTQSSPKL 150
PP+ G +HI K L SS KL
Sbjct: 172467 PPF--KVTLTGGYLHIYGKTLL---SSSKL 172541
>gb|U90273.1|U90273 Homo sapiens CTLA-4 mRNA, partial cds
Length = 414
Score = 47.8 bits (112), Expect = 6e-04
Identities = 37/117 (31%), Positives = 53/117 (44%), Gaps = 5/117 (4%)
Frame = +1
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y+ A E R ++ + +S V EVC + F ++
Sbjct: 16 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI 195
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHI--KEK 139
C G V + L T +Y CK+E MYPPPY NGT I++ KEK
Sbjct: 196 --CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIAKEK 357
>gb|AC103880.4| Homo sapiens chromosome 2 clone RP11-278L16, complete sequence
Length = 34266
Score = 47.0 bits (110), Expect = 0.001
Identities = 38/150 (25%), Positives = 66/150 (43%), Gaps = 2/150 (1%)
Frame = +1
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKG--V 60
+ LL L+F++ ++ + + + + V + C+Y + ++F+ L KG +
Sbjct: 27103 MSLLLCFLSFYAGEINGSA----NYEMFIFHNGGVQILCKYPD--IVQQFKMQLLKGGQI 27264
Query: 61 NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 120
D+ G+GN + C N +V+F L+NL +H + YFC + P
Sbjct: 27265 LCDLTKTKGSGNTVSIKSLKF-----CHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDP 27429
Query: 121 PPYLDNERSNGTIIHIKEKHLCHTQSSPKL 150
PP+ G +HI K L SS KL
Sbjct: 27430 PPF--KVTLTGGYLHIYGKTLL---SSSKL 27504
>gb|AF411059.1|AF411059 Homo sapiens clone BAC_22608 inducible T-cell co-stimulator (ICOS)
gene, complete cds; and endogenous virus HERV-H, complete
sequence
Length = 147538
Score = 47.0 bits (110), Expect = 0.001
Identities = 38/150 (25%), Positives = 66/150 (43%), Gaps = 2/150 (1%)
Frame = +3
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRASLYKG--V 60
+ LL L+F++ ++ + + + + V + C+Y + ++F+ L KG +
Sbjct: 57570 MSLLLCFLSFYAGEINGSA----NYEMFIFHNGGVQILCKYPD--IVQQFKMQLLKGGQI 57731
Query: 61 NSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 120
D+ G+GN + C N +V+F L+NL +H + YFC + P
Sbjct: 57732 LCDLTKTKGSGNTVSIKSLKF-----CHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDP 57896
Query: 121 PPYLDNERSNGTIIHIKEKHLCHTQSSPKL 150
PP+ G +HI K L SS KL
Sbjct: 57897 PPF--KVTLTGGYLHIYGKTLL---SSSKL 57971
>gb|AF316875.1|AF316875 Homo sapiens CTLA-4 V domain region gene, partial cds
Length = 345
Score = 47.0 bits (110), Expect = 0.001
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = +1
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y+ A E R ++ + +S V EVC + F ++
Sbjct: 16 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI 195
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHI 136
C G V + L T +Y CK+E MYPPPY NGT I++
Sbjct: 196 --CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYV 342
>gb|M37243.1|HUMIGCTL1 Homo sapiens cytotoxic T-lymphocyte-associated protein 4 (CTLA4)
gene, exon
Length = 2580
Score = 46.2 bits (108), Expect = 0.002
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Frame = +1
Query: 28 PLLVVDSNE--VSLSCRYSYNLLAKEFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAE 84
P +V+ S+ S C Y+ A E R ++ + +S V EVC + F ++
Sbjct: 2194 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI 2373
Query: 85 FNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHT 144
C G V + L T +Y CK+E MYPPPY NG I++ + T
Sbjct: 2374 --CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGAQIYVIGEQSHFT 2544
Query: 145 QSSP 148
+ +P
Sbjct: 2545 ELTP 2556
>gb|AF222343.1|AF222343 Homo sapiens T-cell specific surface glycoprotein CD28 isoform 3
(CD28) gene, complete cds
Length = 243
Score = 45.1 bits (105), Expect = 0.004
Identities = 28/39 (71%), Positives = 31/39 (78%), Gaps = 1/39 (2%)
Frame = +1
Query: 3 LRLLFLALNFF-SVQVTENKILVKQSPLLVVDSNEVSLS 40
LRLL LALN F S+QVT NKILVKQSP+LV N V+LS
Sbjct: 4 LRLL-LALNLFPSIQVTGNKILVKQSPMLVAYDNAVNLS 117
Score = 38.5 bits (88), Expect = 0.38
Identities = 29/92 (31%), Positives = 33/92 (35%)
Frame = +1
Query: 126 NERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLL 185
NE+SNGTIIH+K KHLC
Sbjct: 121 NEKSNGTIIHVKGKHLC------------------------------------------- 171
Query: 186 QVTTMNMTPRRPGLTRKPYQPYAPARDFAAYR 217
+P PG P +PYAP RDFAAYR
Sbjct: 172 ------PSPLFPG----PSKPYAPPRDFAAYR 237
>dbj|AB023132.1|AB023132 Mus musculus mRNA for activation-inducible lymphocyte
immunomediatory molecule AILIM, complete cds
Length = 870
Score = 40.4 bits (93), Expect = 0.099
Identities = 28/106 (26%), Positives = 43/106 (40%)
Frame = +3
Query: 37 VSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETV 96
V +SC+Y + + R + V ++ G+GN C N +V
Sbjct: 141 VQISCKYPETVQQLKMRLFREREVLCELTKTKGSGNAV-----SIKNPMLCLYHLSNNSV 305
Query: 97 TFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
+F L N + YFC + PPP+ + S G +HI E LC
Sbjct: 306 SFFLNNPDSSQGSYYFCSLSIFDPPPFQERNLSGG-YLHIYESQLC 440
>gb|AF257230.1|AF257230 Mus musculus CCLP precursor (CCLP) mRNA, complete cds
Length = 1232
Score = 40.4 bits (93), Expect = 0.099
Identities = 28/106 (26%), Positives = 43/106 (40%)
Frame = +1
Query: 37 VSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETV 96
V +SC+Y + + R + V ++ G+GN C N +V
Sbjct: 142 VQISCKYPETVQQLKMRLFREREVLCELTKTKGSGNAV-----SIKNPMLCLYHLSNNSV 306
Query: 97 TFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
+F L N + YFC + PPP+ + S G +HI E LC
Sbjct: 307 SFFLNNPDSSQGSYYFCSLSIFDPPPFQERNLSGG-YLHIYESQLC 441
>ref|NM_017480.1| Mus musculus inducible T-cell co-stimulator (Icos), mRNA
Length = 2047
Score = 40.4 bits (93), Expect = 0.099
Identities = 28/106 (26%), Positives = 43/106 (40%)
Frame = +1
Query: 37 VSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETV 96
V +SC+Y + + R + V ++ G+GN C N +V
Sbjct: 157 VQISCKYPETVQQLKMRLFREREVLCELTKTKGSGNAV-----SIKNPMLCLYHLSNNSV 321
Query: 97 TFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
+F L N + YFC + PPP+ + S G +HI E LC
Sbjct: 322 SFFLNNPDSSQGSYYFCSLSIFDPPPFQERNLSGG-YLHIYESQLC 456
>emb|AJ250559.1|MMU250559 Mus musculus mRNA for surface protein (ICOS gene)
Length = 2047
Score = 40.4 bits (93), Expect = 0.099
Identities = 28/106 (26%), Positives = 43/106 (40%)
Frame = +1
Query: 37 VSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETV 96
V +SC+Y + + R + V ++ G+GN C N +V
Sbjct: 157 VQISCKYPETVQQLKMRLFREREVLCELTKTKGSGNAV-----SIKNPMLCLYHLSNNSV 321
Query: 97 TFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
+F L N + YFC + PPP+ + S G +HI E LC
Sbjct: 322 SFFLNNPDSSQGSYYFCSLSIFDPPPFQERNLSGG-YLHIYESQLC 456
>gb|AF216748.1|AF216748 Mus musculus CD28-related protein 1 mRNA, partial cds
Length = 600
Score = 40.4 bits (93), Expect = 0.099
Identities = 28/106 (26%), Positives = 43/106 (40%)
Frame = +1
Query: 37 VSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETV 96
V +SC+Y + + R + V ++ G+GN C N +V
Sbjct: 112 VQISCKYPETVQQLKMRLFREREVLCELTKTKGSGNAV-----SIKNPMLCLYHLSNNSV 276
Query: 97 TFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLC 142
+F L N + YFC + PPP+ + S G +HI E LC
Sbjct: 277 SFFLNNPDSSQGSYYFCSLSIFDPPPFQERNLSGG-YLHIYESQLC 411
>gb|AF307318.1|AF307318 Cricetulus griseus clone PRN015 cytotoxic T lymphocyte-associated
molecule-4 (CTLA-4) gene, partial cds
Length = 205
Score = 37.4 bits (85), Expect = 0.84
Identities = 22/70 (31%), Positives = 33/70 (46%), Gaps = 1/70 (1%)
Frame = +1
Query: 51 EFRASLYKGVNSDV-EVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTD 109
E R ++ + NS + EVC FT + + + C G F+ V + L T
Sbjct: 1 EVRVTVLRQTNSQMTEVCATT--FTMKNKLGFLDDPFCSGTFNESKVNLTIQGLRAADTG 174
Query: 110 IYFCKIEFMY 119
+YFCK+E MY
Sbjct: 175 LYFCKVELMY 204
>gb|AF327185.1|AF327184S2 Mus musculus inducible costimulatory protein (Icos) gene, exons 2
through 5 and complete cds
Length = 9705
Score = 35.4 bits (80), Expect = 3.2
Identities = 27/105 (25%), Positives = 42/105 (39%)
Frame = +3
Query: 37 VSLSCRYSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETV 96
V +SC+Y + + R + V ++ G+GN C N +V
Sbjct: 2232 VQISCKYPETVQQLKMRLFREREVLCELTKTKGSGNAV-----SIKNPMLCLYHLSNNSV 2396
Query: 97 TFRLWNLHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHL 141
+F L N + YFC + PPP+ + S G +HI K L
Sbjct: 2397 SFFLNNPDSSQGSYYFCSLSIFDPPPFQERNLSGG-YLHIYGKAL 2528
>emb|AL591674.3|AL591674 Zebrafish DNA sequence from clone XX-40G1, complete sequence [Danio
rerio]
Length = 96045
Score = 35.4 bits (80), Expect = 3.2
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Frame = -3
Query: 5 LLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYS----------YNLLAKEFRA 54
L FL L F S E K V+ + V+ V+++C YS Y E
Sbjct: 24595 LFFLFLGFVSPDSVEQKTRVQTA----VEGESVTINCTYSTTDTFPYLFWYQQQVNEIPQ 24428
Query: 55 SLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCK 114
+ K + E+ + QF+ F+ D D +V R+ ++HV+ + +Y+C
Sbjct: 24427 YMLKKFSGSGEI---------EKQFKKR--FDADLDSSTTSVLLRIKDVHVSDSAVYYCA 24281
Query: 115 IE 116
++
Sbjct: 24280 LK 24275
>emb|AL138968.18| Human DNA sequence from clone RP6-13I1 on chromosome Xq22.2-24 Contains
the 5' end of the FACL4 gene for fatty-acid-Coenzyme A
ligase, long chain and a CpG island, complete sequence
[Homo sapiens]
Length = 63262
Score = 35.0 bits (79), Expect = 4.2
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = +2
Query: 76 QPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFC 113
QP F++ + C +F+N+T T L +H++H YFC
Sbjct: 36605 QPNFKNQRKGYCQVNFNNQTKTLALQEIHISH-QFYFC 36715
>gb|AF090916.1|AF090916 Homo sapiens clone HQ0312
Length = 1396
Score = 35.0 bits (79), Expect = 4.2
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -3
Query: 76 QPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFC 113
QP F++ + C +F+N+T T L +H++H YFC
Sbjct: 1079 QPNFKNQRKGYCQVNFNNQTKTLALQEIHISH-QFYFC 969
>gb|S76835.1|S76835 Ig VH=anti-sigma receptor Ig heavy chain [mice, hybridoma cell line
10G9, mRNA Partial, 528 nt]
Length = 528
Score = 35.0 bits (79), Expect = 4.2
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Frame = +1
Query: 3 LRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYS----YNLLAKEFRASLYK 58
L L+FL L VQ +LV+ LV+ + LSC S N R K
Sbjct: 88 LSLIFLVLVLKGVQC--EVMLVESGGGLVMPGGSLKLSCAASGFTFSNYAMSWVRQIPEK 261
Query: 59 GVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFM 118
+ + +G G+FTY P F D T+ R+ +L T +Y+C
Sbjct: 262 RLEWVATISIG-GHFTYFPD-SVKGRFTISRDNAKNTLYLRMSSLRSEDTAMYYCVRHEG 435
Query: 119 YPPPYLD 125
Y PY D
Sbjct: 436 YGRPYFD 456
>emb|AL591596.5|AL591596 Zebrafish DNA sequence from clone XX-205M23, complete sequence [Danio
rerio]
Length = 84809
Score = 35.0 bits (79), Expect = 4.2
Identities = 35/146 (23%), Positives = 59/146 (39%), Gaps = 10/146 (6%)
Frame = +1
Query: 6 LFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYS----------YNLLAKEFRAS 55
+FL L F S E K V+ + V+ V+++C YS Y E
Sbjct: 38713 IFLFLGFVSPDSVEQKTRVQTA----VEGESVTINCTYSTTDTFPYLFWYQQQVNEIPQY 38880
Query: 56 LYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKI 115
+ K E+ + QF+ F+ D D +V R+ +HV+ + +Y+C +
Sbjct: 38881 MLKKFPGSGEI---------EKQFKKR--FDADLDSSTTSVLLRIKEVHVSDSAVYYCAL 39027
Query: 116 EFMYPPPYLDNERSNGTIIHIKEKHL 141
+ P + RS T+ H KH+
Sbjct: 39028 K-----PTVTQTRS--TLTHKHCKHI 39084
>emb|AJ307500.1|MMU307500 Mus musculus partial 17.2.25-D-Jh4 gene for immunoglobulin heavy
chain, sequence x12c
Length = 312
Score = 35.0 bits (79), Expect = 4.2
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = +1
Query: 70 NGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 120
NGN Y P+F+ A D + T +L +L T +Y+C I + YP
Sbjct: 142 NGNTKYDPKFQGKATITADTS--SNTAYLQLSSLTSEDTAVYYCAIYYRYP 288
>gb|BC021232.1|BC021232 Homo sapiens, clone IMAGE:4120623, mRNA, partial cds
Length = 1042
Score = 34.7 bits (78), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = -1
Query: 152 WALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTRK 202
W L+ G LFC + LC+++ NS R + +TP R LT+K
Sbjct: 283 WGLITSIGPLFCCEEELAFCLCLVFMNSMRMYCACWKAIKITPNRDKLTKK 131
>gb|M13329.1|MUSIGHEA Mouse Ig mu-chain active V-region VDJ4C1 mRNA from hybridoma
L3.10.5, V-H-81X family
Length = 444
Score = 34.7 bits (78), Expect = 5.4
Identities = 23/84 (27%), Positives = 38/84 (44%)
Frame = +1
Query: 68 VGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNE 127
+ NGN Y P+F+ A D + T +L +L T +Y+C + Y P Y +
Sbjct: 214 LANGNTKYDPKFQGKATIT--ADTSSNTAYLQLSSLTSEDTAVYYCARYYRY-PYYAMDY 384
Query: 128 RSNGTIIHIKEKHLCHTQSSPKLF 151
GT + + + +QS P +F
Sbjct: 385 WGQGTSVTVSSE----SQSFPNVF 444
>gb|M13328.1|MUSIGHDZ Mouse Ig mu-chain active V-region VDJ4C1 mRNA from hybridoma
17.2.25, V-H-81X family
Length = 444
Score = 34.7 bits (78), Expect = 5.4
Identities = 23/84 (27%), Positives = 38/84 (44%)
Frame = +1
Query: 68 VGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPYLDNE 127
+ NGN Y P+F+ A D + T +L +L T +Y+C + Y P Y +
Sbjct: 214 LANGNTKYDPKFQGKATIT--ADTSSNTAYLQLSSLTSEDTAVYYCARYYRY-PYYAMDY 384
Query: 128 RSNGTIIHIKEKHLCHTQSSPKLF 151
GT + + + +QS P +F
Sbjct: 385 WGQGTSVTVSSE----SQSFPNVF 444
>ref|NM_015196.1| Homo sapiens KIAA0922 protein (KIAA0922), mRNA
Length = 3906
Score = 34.7 bits (78), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = -3
Query: 152 WALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTRK 202
W L+ G LFC + LC+++ NS R + +TP R LT+K
Sbjct: 1789 WGLITSIGPLFCCEEELAFCLCLVFMNSMRMYCACWKAIKITPNRDKLTKK 1637
>emb|AL136932.1|HSM801896 Homo sapiens mRNA; cDNA DKFZp586H1322 (from clone DKFZp586H1322);
complete cds
Length = 3906
Score = 34.7 bits (78), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = -3
Query: 152 WALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTRK 202
W L+ G LFC + LC+++ NS R + +TP R LT+K
Sbjct: 1789 WGLITSIGPLFCCEEELAFCLCLVFMNSMRMYCACWKAIKITPNRDKLTKK 1637
>dbj|AB023139.1|AB023139 Homo sapiens mRNA for KIAA0922 protein, partial cds
Length = 2505
Score = 34.7 bits (78), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = -2
Query: 152 WALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRRPGLTRK 202
W L+ G LFC + LC+++ NS R + +TP R LT+K
Sbjct: 320 WGLITSIGPLFCCEEELAFCLCLVFMNSMRMYCACWKAIKITPNRDKLTKK 168
>dbj|AP001046.1|AP001046 Homo sapiens genomic DNA, chromosome 21, clone:KB43F12, MX1-D21S171
region, complete sequence
Length = 158063
Score = 34.3 bits (77), Expect = 7.1
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +2
Query: 66 VCVGNGNFTYQPQFRSNAEFN-CDGDFDNETVTF---RLWNLHVNHTDIYFCKIEFMYPP 121
+C+ N FTY N +F D +N T+ RL N +TDI F Y
Sbjct: 121268 ICLENRRFTYTDIRLDNRQFTYTDICLENRRFTYTDIRLENRRFTYTDIRLENRRFTYTD 121447
Query: 122 PYLDNERSNGTIIHIKEKHLCHT 144
LDN R T I ++ + +T
Sbjct: 121448 IRLDNRRFTYTDIRLENRRFTYT 121516
>gb|AC004537.1|AC004537 Homo sapiens PAC clone RP5-872F7 from 7q31, complete sequence
Length = 88872
Score = 34.3 bits (77), Expect = 7.1
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = +2
Query: 107 HTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCH 143
H DIY F+YP PY+ + S+ +++H ++ H CH
Sbjct: 3131 HADIYMPIPSFLYPCPYIPSSCSSTSLVH-EKAHSCH 3238
>gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, complete sequence
Length = 170393
Score = 34.3 bits (77), Expect = 7.1
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 150 LFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRR--PGLTRK 202
LFW VAGV FC V L V+ T R R Q T++N TP + PG+ ++
Sbjct: 58090 LFWPESSVAGVAFCPSFAEPVGL-VLLTQPGRLRAAQATSLNPTPAKGEPGVEQQ 57929
>gb|U61494.1|MMU61494 Mus musculus immunoglobulin heavy chain variable region mRNA,
partial cds
Length = 353
Score = 34.3 bits (77), Expect = 7.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 70 NGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFC-KIEFMYPPPY 123
NGN Y P+F+ A D + T +L +L T +Y+C + E+ YP PY
Sbjct: 163 NGNTKYDPKFQGKATIT--ADTSSNTAYLQLSSLTSEDTAVYYCARGEYDYPFPY 321
>gb|AC009169.8| Homo sapiens chromosome 16 clone RP11-90K18, complete sequence
Length = 175464
Score = 34.3 bits (77), Expect = 7.1
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 150 LFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLLQVTTMNMTPRR--PGLTRK 202
LFW VAGV FC V L V+ T R R Q T++N TP + PG+ ++
Sbjct: 124560 LFWPESSVAGVAFCPSFAEPVGL-VLLTQPGRLRAAQATSLNPTPAKGEPGVEQQ 124399
>dbj|AP001751.1|AP001751 Homo sapiens genomic DNA, chromosome 21q, section 95/105
Length = 340000
Score = 34.3 bits (77), Expect = 7.1
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +2
Query: 66 VCVGNGNFTYQPQFRSNAEFN-CDGDFDNETVTF---RLWNLHVNHTDIYFCKIEFMYPP 121
+C+ N FTY N +F D +N T+ RL N +TDI F Y
Sbjct: 121268 ICLENRRFTYTDIRLDNRQFTYTDICLENRRFTYTDIRLENRRFTYTDIRLENRRFTYTD 121447
Query: 122 PYLDNERSNGTIIHIKEKHLCHT 144
LDN R T I ++ + +T
Sbjct: 121448 IRLDNRRFTYTDIRLENRRFTYT 121516
>gb|M94110.1|BACCTA Bacillus firmus DNA photolyase (phr) gene, 3' end, and cytochrome
oxidase (cta) operon
Length = 10008
Score = 34.3 bits (77), Expect = 7.1
Identities = 25/72 (34%), Positives = 36/72 (49%)
Frame = -3
Query: 126 NERSNGTIIHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVIWTNSRRNRLL 185
N R N T+IHI+ + KLF+ + +A L LLV ++ +I T SR R
Sbjct: 6658 NARPNTTVIHIQ------IIMALKLFFFIANIANTLV--KLLVNSSIVIIKTRSRATRSA 6503
Query: 186 QVTTMNMTPRRP 197
+V + PRRP
Sbjct: 6502 EVGPSAVPPRRP 6467
>emb|AJ298052.1|HSA298052 Homo sapiens partial mRNA for immunoglobulin variable light chain,
clone C2myp
Length = 336
Score = 33.9 bits (76), Expect = 9.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 89 GDFDNETVTFRLWNLHVNHTDIYFCKIEFMYPPPY 123
G T + + L + Y+CK+E MYPPPY
Sbjct: 193 GSKSGNTASLTVSGLQADDEADYYCKVELMYPPPY 297
>gb|AC093892.3| Homo sapiens chromosome 2 clone RP11-702L18, complete sequence
Length = 111078
Score = 33.9 bits (76), Expect = 9.2
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Frame = +1
Query: 2 TLRLLFLALNFFSVQVTE-------NKILVKQSPLLVVDSNEVSLSCRYSYNLLAKEFRA 54
T R LF +NF ++ + NKI VK L+ NE C Y++N + K
Sbjct: 98788 THRDLFFVINFSTISLKS*AHIMLINKINVKICISLITMHNECIFICIYNFNNVMKMLN- 98964
Query: 55 SLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWNLHVNHTDIYFC 113
+G++ V + + + RS FNC D+ + +L+ + VN I +C
Sbjct: 98965 --IRGLSKSDAVWL*QSEYGEGGKTRS*MPFNC-AMHDSGNSSVKLFQVEVNSL*ITYC 99132
>gb|AC021192.7|AC021192 Homo sapiens clone RP11-767N15, complete sequence
Length = 202563
Score = 33.9 bits (76), Expect = 9.2
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = -3
Query: 114 KIEFMYPPPYL----DNERSNGTIIHIKEKHLCHTQSS 147
KI+ YP Y + ER N II+I +KH+CH SS
Sbjct: 88876 KIKIFYPQIYTYRERERERENIYIIYISQKHVCHIYSS 88763
>emb|AJ307481.1|MMU307481 Mus musculus partial 17.2.25-D-Jh4 gene for immunoglobulin heavy
chain, sequence t24a
Length = 312
Score = 33.9 bits (76), Expect = 9.2
Identities = 25/95 (26%), Positives = 39/95 (40%), Gaps = 4/95 (4%)
Frame = +1
Query: 30 LVVDSNEVSLSCRYSYNLLAKEFRASLYKGVNSDVE----VCVGNGNFTYQPQFRSNAEF 85
LV V LSC S + + + +G +E + NGN Y P+F+ A
Sbjct: 10 LVKPGASVKLSCTASGFNIKDTYMHWVKQGPEQGLEWIGRIDPANGNTKYDPKFQGKATI 189
Query: 86 NCDGDFDNETVTFRLWNLHVNHTDIYFCKIEFMYP 120
D + T +L +L T +Y+C + YP
Sbjct: 190 T--ADTSSNTAYLQLSSLTSEDTAVYYCARYYRYP 288
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 21, 2002 12:37 AM
Number of letters in database: 601,717,568
Number of sequences in database: 1,165,784
Lambda K H
0.325 0.139 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,554,315,101
Number of Sequences: 1165784
Number of extensions: 28779254
Number of successful extensions: 169430
Number of sequences better than 10.0: 204
Number of HSP's better than 10.0 without gapping: 62879
Number of HSP's successfully gapped in prelim test: 7533
Number of HSP's that attempted gapping in prelim test: 74287
Number of HSP's gapped (non-prelim): 124550
length of query: 218
length of database: 1,632,228,288
effective HSP length: 129
effective length of query: 89
effective length of database: 1,481,842,152
effective search space: 131883951528
effective search space used: 131883951528
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)