TBLASTN 2.2.2 [Dec-14-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(231 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences)
1,168,056 sequences; 626,783,262 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_013729.1| Mus musculus Mix1 homeobox-like 1 (Xenopus... 416 e-114
gb|AF135063.1|AF135063 Mus musculus Mix-like homeobox prote... 416 e-114
gb|AF154573.1|AF154573 Mus musculus homeobox protein MIX (M... 416 e-114
gb|AF201959.1|AF201959 Mus musculus Mix-related homeobox pr... 394 e-108
ref|NM_031944.1| Homo sapiens Mix-like homeobox protein 1 (... 264 5e-69
gb|AF211891.1|AF211891 Homo sapiens Mix.1 homeobox-like pro... 264 5e-69
ref|XM_037300.5| Homo sapiens Mix-like homeobox protein 1 (... 228 3e-58
gb|AF218357.1|AF218357 Homo sapiens homeodomain protein MIX... 149 1e-34
gb|U34615.1|GGU34615 Gallus gallus homeobox protein CMIX mR... 89 4e-16
gb|M27063.1|XELMIX1HB Xenopus laevis homeobox protein (Mix.... 85 5e-15
emb|AJ004903.1|GGJ004903 Gallus gallus mRNA for CMIX homeob... 84 9e-15
ref|NM_130940.1| Danio rerio mixer (mix), mRNA 80 2e-13
gb|AF121771.1|AF121771 Danio rerio homeodomain transcriptio... 80 2e-13
gb|U50745.1|XLU50745 Xenopus laevis homeobox protein Mix.2 ... 78 5e-13
gb|AF076215.1|AF076215 Homo sapiens prophet of Pit1 (PROP1)... 77 1e-12
ref|NM_006261.1| Homo sapiens prophet of Pit1, paired-like ... 77 1e-12
gb|AF005999.1|AF005999 Xenopus laevis homeobox protein (mil... 73 2e-11
gb|AF043740.1|AF043740 Branchiostoma floridae amphioxus Otx... 73 2e-11
gb|AF079560.1|AF079560 Xenopus laevis homeobox protein BIX2... 72 3e-11
gb|AF079562.1|AF079562 Xenopus laevis homeobox protein BIX4... 72 3e-11
gb|AF081351.1|AF081351 Xenopus laevis homeodomain protein M... 72 5e-11
gb|AF079559.1|AF079559 Xenopus laevis homeobox protein BIX1... 72 5e-11
ref|NM_053869.1| Rattus norvegicus aristaless (Drosophila) ... 71 8e-11
gb|U25967.1|RNU25967 Rattus norvegicus Arix1 homeodomain pr... 71 8e-11
gb|AF081350.1|AF081350 Xenopus laevis homeodomain protein M... 70 1e-10
gb|AY029294.1| Xenopus laevis transcription factor Otx1 (Ot... 70 1e-10
gb|AF068263.1|AF068263 Xenopus laevis Mix-like endodermal r... 70 1e-10
ref|NM_005169.1| Homo sapiens aristaless homeobox (Drosophi... 70 1e-10
emb|AJ278856.1|PDU78856 Platynereis dumerilii mRNA for Otx ... 70 1e-10
emb|AJ251846.1|XLA251846 Xenopus laevis mRNA for OTX5b prot... 70 1e-10
ref|XM_084561.1| Homo sapiens aristaless homeobox (Drosophi... 70 1e-10
ref|NM_008887.1| Mus musculus aristaless homeobox gene homo... 70 1e-10
emb|X75014.1|MMPHOXH M.musculus Phox2 mRNA for homeodomain ... 70 1e-10
gb|AY040861.1| Scyliorhinus canicula homeobox protein Otx5 ... 70 1e-10
ref|NM_059845.1| homeobox protein (otd subfamily) 69 2e-10
gb|AF178670.1|AF178670 Gallus gallus homeobox protein Chx10... 69 2e-10
gb|L26509.1|XELORTHOAA Xenopus laevis orthodenticle-A like ... 69 3e-10
gb|AF129932.1|AF129932 Herdmania curvata homeobox protein O... 69 3e-10
gb|AE003466.1|AE003466 Drosophila melanogaster genomic scaf... 69 4e-10
dbj|AB034702.1|AB034702 Xenopus laevis Xotx5 mRNA, complete... 69 4e-10
gb|AC007582.7| Drosophila melanogaster, chromosome 2R, regi... 69 4e-10
gb|AY036005.1| Danio rerio orthodenticle-related homeobox 5... 69 4e-10
gb|AY071593.1| Drosophila melanogaster RE64348 full length ... 69 4e-10
emb|Z46972.1|XLOTXNUC X.laevis mRNA for homeobox protein 69 4e-10
emb|AJ000939.1|OLJ000939 Oryzias latipes, Otx2 gene 68 5e-10
dbj|D26173.1|ZEFOTX2 Zebrafish otx2 mRNA for otx homeoprote... 68 5e-10
gb|AF461038.1|AF461038 Gallus gallus paired-type homeobox A... 68 5e-10
gb|U19813.1|XLXOTX2S1 Xenopus laevis homeobox protein ortho... 68 5e-10
gb|U29174.1|RNU29174 Rattus norvegicus paired-like homeodom... 68 5e-10
ref|NM_131251.1| Danio rerio orthodenticle homolog 2 (otx2)... 68 5e-10
gb|U14592.1|DRU14592 Danio rerio orthodenticle-related prot... 68 5e-10
gb|BC017609.1|BC017609 Mus musculus, clone MGC:27657 IMAGE:... 68 5e-10
ref|NM_009116.1| Mus musculus paired related homeobox 2 (Pr... 68 5e-10
emb|X52875.1|MMHOMEOS8 Mouse homeobox gene Prx2 mRNA 68 5e-10
dbj|AB066290.1|AB066290 Leucopsarion petersii otx3 gene for... 68 7e-10
ref|XM_060436.2| Homo sapiens similar to dJ1109J22.1 (novel... 68 7e-10
gb|AF421858.1| Mus musculus paired-like homeobox protein DM... 68 7e-10
ref|NM_131215.1| Danio rerio orthodenticle homolog 3 (otx3)... 68 7e-10
dbj|D26174.1|ZEFOTX3 Zebrafish otx3 mRNA for otx homeoprote... 68 7e-10
gb|AF461039.1|AF461039 Mus musculus paired-type homeobox At... 68 7e-10
ref|NM_130865.1| Mus musculus diencephalon/mesencephalon-ex... 68 7e-10
gb|AF463513.1|AF463513 Mus musculus cerebellar-diencephalic... 68 7e-10
gb|AF421857.1| Mus musculus paired-like homeobox protein DM... 68 7e-10
gb|AY040536.1| Schistocerca americana pairberry 2 transcrip... 65 8e-10
ref|NM_131250.1| Danio rerio orthodenticle homolog 1 (otx1)... 67 9e-10
gb|U14591.1|DRU14591 Danio rerio orthodenticle-related prot... 67 9e-10
gb|AF165886.1|AF165886 Branchiostoma floridae paired-box tr... 67 9e-10
dbj|D26172.1|ZEFOTX1 Zebrafish otx1 mRNA for otx homeoprote... 67 9e-10
ref|NM_000554.1| Homo sapiens cone-rod homeobox (CRX), mRNA 67 9e-10
gb|AF024711.1|AF024711 Homo sapiens cone rod homeobox prote... 67 9e-10
gb|BC016664.1|BC016664 Homo sapiens, cone-rod homeobox, clo... 67 9e-10
dbj|AB057732.1|AB057732 Ciona savignyi Cs-OTX mRNA, complet... 67 1e-09
gb|BC016502.1|BC016502 Mus musculus, cone-rod homeobox cont... 67 1e-09
ref|NM_021855.1| Rattus norvegicus cone-rod homeobox protei... 67 1e-09
gb|AF135838.1|AF135838 Rattus norvegicus homeodomain protei... 67 1e-09
dbj|AB021129.1|AB021129 Rattus norvegicus Crx mRNA for cone... 67 1e-09
gb|AF305499.1|AF305499 Ciona intestinalis Otx mRNA, complet... 67 1e-09
ref|NM_007770.1| Mus musculus cone-rod homeobox containing ... 67 1e-09
gb|U77615.1|MMU77615 Mus musculus homeodomain protein (crx)... 67 1e-09
dbj|AB066289.1|AB066289 Leucopsarion petersii otx1 gene for... 67 1e-09
gb|AF251033.1|AF251033 Homo sapiens homeodomain protein RIN... 67 1e-09
gb|BC007621.1|BC007621 Homo sapiens, Similar to Orthodentic... 67 1e-09
ref|NM_014588.2| Homo sapiens visual system homeobox 1 homo... 67 1e-09
gb|AF176797.2|AF176797 Homo sapiens transcription factor VS... 67 1e-09
ref|XM_049268.1| Homo sapiens similar to HOMEOBOX PROTEIN O... 67 1e-09
emb|AJ223627.1|TCAJ3627 Tribolium castaneum mRNA for orthod... 67 1e-09
gb|AF079561.1|AF079561 Xenopus laevis homeobox protein BIX3... 67 1e-09
dbj|AB061768.1|AB061768 Hemicentrotus pulcherrimus HpOtxL m... 66 2e-09
ref|NM_013109.1| Rattus norvegicus Orthodenticle (Drosophi... 66 2e-09
gb|L32602.1|RATOTX1X Rattus norvegicus OTX1 mRNA, complete cds 66 2e-09
dbj|D84062.1|D84062 Halocynthia roretzi mRNA for otx/orthod... 66 2e-09
emb|X68884.1|MMOTX2 M.musculus Otx2 mRNA 66 2e-09
emb|X68883.1|MMOTX1 M.musculus Otx1 mRNA 66 2e-09
dbj|AB028220.1|AB028220 Ptychodera flava mRNA for Pf-Otx, c... 66 2e-09
gb|AF154123.1|AF154123 Bos taurus cone-rod homeobox mRNA, c... 66 2e-09
dbj|AB012299.1|AB012299 Lampetra japonica mRNA for LjOtxA, ... 66 2e-09
dbj|AB011526.1|AB011526 Hemicentrotus pulcherrimus early ty... 66 2e-09
gb|S76899.1|S76899 SpOtx=orthodenticle-related protein [Str... 66 2e-09
dbj|AB012300.1|AB012300 Lampetra japonica mRNA for LjOtxB, ... 66 2e-09
ref|NM_021728.1| Homo sapiens orthodenticle homolog 2 (Dros... 66 2e-09
emb|AJ223614.1|TRC223614 Tribolium castaneum mRNA for ortho... 66 2e-09
gb|AF099746.1|AF099746 Petromyzon marinus Otx mRNA, complet... 66 2e-09
gb|AF381627.1|AF381627 Caenorhabditis elegans clone yk345e3... 66 3e-09
gb|AF381628.1|AF381628 Caenorhabditis elegans clone yk51g10... 66 3e-09
dbj|AB041043.1|AB041043 Stichopus japonicus Sj-Otx mRNA for... 66 3e-09
ref|NM_131227.1| Danio rerio retinal homeobox gene 3 (rx3),... 66 3e-09
gb|AF001909.1|AF001909 Danio rerio retinal homeobox protein... 66 3e-09
ref|NM_075472.1| Caenorhabditis elegans 66 3e-09
ref|NM_075473.1| Caenorhabditis elegans 66 3e-09
ref|NM_078536.1| Drosophila melanogaster ocelliless (oc), mRNA 66 3e-09
emb|X58983.1|DMOTD D.melanogaster otd gene for orthodenticl... 66 3e-09
ref|NM_006982.1| Homo sapiens cartilage paired-class homeop... 65 3e-09
gb|AF014368.1|AF014368 Danio rerio transcription factor PAX... 65 3e-09
gb|U31986.1|HSU31986 Human cartilage-specific homeodomain p... 65 3e-09
dbj|AB061220.1|AB061220 Lampetra japonica mRNA for paired b... 65 3e-09
gb|BC010923.1|BC010923 Homo sapiens, Similar to cartilage p... 65 3e-09
gb|AF169414.1|AF169414 Ambystoma mexicanum paired-box trans... 65 3e-09
gb|AY040535.1| Schistocerca americana pairberry 1 transcrip... 65 3e-09
gb|AF169412.1|AF169412 Ambystoma mexicanum paired-box trans... 65 3e-09
ref|NM_002584.1| Homo sapiens paired box gene 7 (PAX7), tra... 65 3e-09
emb|X96743.1|HSPAX7M H.sapiens mRNA for paired box containi... 65 3e-09
dbj|D88741.1|D88741 Cynops pyrrhogaster mRNA for PAX6 LL, P... 65 3e-09
gb|AF169413.1|AF169413 Ambystoma mexicanum paired-box trans... 65 3e-09
gb|AF014370.1|AF014370 Danio rerio transcription factor PAX... 65 3e-09
gb|AF254422.2|AF254422 Mus musculus paired box transcriptio... 65 3e-09
gb|AF169415.1|AF169415 Ambystoma mexicanum paired-box trans... 65 3e-09
ref|NM_131304.1| Danio rerio paired box gene 6a (pax6a), mRNA 65 3e-09
emb|X63183.1|BRPAX6 B.rerio pax-6 mRNA 65 3e-09
emb|X61389.1|BRPAXZFA B.rerio mRNA for Pax[zf-a] 65 3e-09
ref|NM_013833.1| Mus musculus retina and anterior neural fo... 65 3e-09
gb|AF001906.1|AF001906 Mus musculus retinal homeobox protei... 65 3e-09
gb|AF014369.1|AF014369 Danio rerio transcription factor PAX... 65 3e-09
emb|Z35141.1|HSPAX7GE H.sapiens Pax-7 gene for transcriptio... 65 3e-09
gb|AF411465.1|AF411465 Petromyzon marinus transcription fac... 65 3e-09
dbj|D87838.1|D87838 Gallus gallus mRNA for PAX7 protein, co... 65 3e-09
ref|NM_013945.1| Homo sapiens paired box gene 7 (PAX7), tra... 65 3e-09
gb|U73177.1|MMU73177 Mus musculus paired-type homeobox (rax... 65 3e-09
ref|NM_012921.1| Rattus norvegicus Cartilage homeo protein ... 65 4e-09
gb|L14018.1|RATCART1X Rat cartilage homeoprotein 1 (Cart-1)... 65 4e-09
ref|NM_079139.1| Drosophila melanogaster gooseberry (gsb), ... 65 4e-09
dbj|AK025181.1|AK025181 Homo sapiens cDNA: FLJ21528 fis, cl... 65 4e-09
ref|XM_038589.1| Homo sapiens similar to Homeobox domain co... 65 4e-09
gb|AF381629.1|AF381629 Caenorhabditis elegans homeodomain p... 65 6e-09
gb|U15276.1|XLU15276 Xenopus laevis cartilage homeoprotein ... 65 6e-09
ref|NM_023951.1| Rattus norvegicus OG9 homeobox gene (Og9x)... 65 6e-09
ref|NM_053678.1| Rattus norvegicus retina and anterior neur... 65 6e-09
gb|AF135839.1|AF135839 Rattus norvegicus homeodomain protei... 65 6e-09
gb|AF232676.1|AF232676 Sus scrofa prophet of pit-1 (Prop-1)... 65 6e-09
ref|NM_007441.1| Mus musculus aristaless 3 (Alx3), mRNA 65 6e-09
gb|U96109.1|MMU96109 Mus musculus proline-rich transcriptio... 65 6e-09
gb|AF160992.1|AF160992 Podocoryne carnea (jellyfish) homeod... 65 6e-09
ref|NM_131641.1| Danio rerio paired box gene 6b (pax6b), mRNA 65 6e-09
gb|AF061252.1|AF061252 Danio rerio Pax-family transcription... 65 6e-09
ref|NM_077459.1| homeobox protein (otd subfamily) 64 7e-09
emb|Y07548.1|AFPAX6E24 Astyanax fasciatus mRNA for PAX-6 pr... 64 7e-09
gb|M14941.1|DROPRD41 D.melanogaster PRD mRNA clone BSH4, ho... 64 7e-09
emb|Y07547.1|AFPAX6C72 Astyanax fasciatus mRNA for PAX-6 pr... 64 7e-09
ref|NM_016307.2| Homo sapiens paired related homeobox prote... 64 7e-09
gb|AF061970.1|AF061970 Homo sapiens paired related homeobox... 64 7e-09
emb|AJ000938.1|OLJ000938 Oryzias latipes, Pax6 gene 64 7e-09
emb|Y07546.1|AFPAX6C23 Astyanax fasciatus mRNA for PAX-6 pr... 64 7e-09
gb|BC014645.1|BC014645 Homo sapiens, Similar to paired rela... 64 7e-09
gb|U20792.1|MMU20792 Mus musculus Pax7 mRNA, partial cds 64 7e-09
gb|AF178671.1|AF178671 Gallus gallus homeobox protein Chx10... 62 9e-09
ref|XM_084033.1| Homo sapiens hypothetical protein MGC15631... 64 1e-08
ref|NM_006492.1| Homo sapiens aristaless-like homeobox 3 (A... 64 1e-08
gb|AF008203.1|AF008203 Homo sapiens homeobox protein (Alx3)... 64 1e-08
dbj|AB020318.1|AB020318 Gallus gallus mRNA for homeobox pro... 64 1e-08
gb|U77178.1|TAU77178 Triturus alpestris paired box homeodom... 64 1e-08
emb|X70475.1|CCPAX C. coturnix mRNA for paired box and home... 64 1e-08
emb|X81403.1|MAALX3 M.auratus mRNA for alx3 64 1e-08
emb|AJ298300.1|OLA298300 Oryzias latipes mRNA for Rx3 protein 64 1e-08
gb|AF092538.1|AF092538 Gallus gallus paired type homeodomai... 64 1e-08
ref|XM_002147.4| Homo sapiens aristaless-like homeobox 3 (A... 64 1e-08
gb|S69508.1|S69508 Pax-6=transcription factor [chickens, em... 64 1e-08
emb|AJ404888.1|HSA404888 Homo sapiens mRNA for homeodomain ... 64 1e-08
gb|BC018709.1|BC018709 Homo sapiens, hypothetical protein M... 64 1e-08
gb|BC017199.1|BC017199 Homo sapiens, paired mesoderm homeob... 64 1e-08
ref|XM_030752.1| Homo sapiens aristaless-like homeobox 4 (A... 64 1e-08
ref|NM_032753.1| Homo sapiens hypothetical protein MGC15631... 64 1e-08
gb|BC007284.1|BC007284 Homo sapiens, Similar to retina and ... 64 1e-08
gb|AF294629.1|AF294629 Homo sapiens aristaless-like 4 (ALX4... 64 1e-08
ref|NM_021926.1| Homo sapiens aristaless-like homeobox 4 (A... 64 1e-08
ref|NM_008888.1| Mus musculus paired mesoderm homeobox 2b (... 64 1e-08
emb|Y14493.1|MMPHOX2B Mus musculus mRNA for PHOX2b protein 64 1e-08
dbj|AB058691.1|AB058691 Homo sapiens mRNA for KIAA1788 prot... 64 1e-08
ref|NM_007442.1| Mus musculus aristaless 4 (Alx4), mRNA 64 1e-08
gb|AF001465.1|MMAF001465 Mus musculus paired-type homeodoma... 64 1e-08
ref|XM_003368.1| Homo sapiens paired mesoderm homeobox 2b (... 64 1e-08
ref|NM_003924.2| Homo sapiens paired mesoderm homeobox 2b (... 64 1e-08
dbj|D82344.1|D82344 Homo sapiens mRNA for NBPhox, complete cds 64 1e-08
gb|AF000673.1|AF000673 Coturnix coturnix paired-box transcr... 64 1e-08
gb|S74393.1|S74393 Pax-6 [rats, small eye rSey, mRNA Partia... 64 1e-08
gb|AF154553.1|AF154553 Xenopus laevis paired domain transcr... 64 1e-08
gb|U02368.1|HSU02368 Human PAX3/forkhead transcription fact... 64 1e-08
dbj|AK014337.1|AK014337 Mus musculus 14, 17 days embryo hea... 64 1e-08
gb|AF154554.1|AF154554 Xenopus laevis paired domain transcr... 64 1e-08
emb|AJ292077.1|MMU292077 Mus musculus partial mRNA for pair... 64 1e-08
gb|AF457141.1|AF457141 Mus musculus Pax6 paired-less isofor... 64 1e-08
gb|U67887.1|XLU67887 Xenopus laevis XLPAX6 (Pax6) mRNA, com... 64 1e-08
gb|M77844.1|HUMOCLHMB H.sapiens oculorhombin (aniridia) mRN... 64 1e-08
gb|AF154557.1|AF154557 Xenopus laevis paired domain transcr... 64 1e-08
gb|BC008826.1|BC008826 Homo sapiens, paired box gene 3 (Waa... 64 1e-08
emb|AJ307468.1|MMU307468 Mus musculus mRNA for paired box p... 64 1e-08
emb|Y19199.1|MMUY19199 Mus musculus partial Pax-6 gene for ... 64 1e-08
emb|Y19198.1|MMUY19198 Mus musculus partial Pax-6 gene for ... 64 1e-08
emb|Y19197.1|MMUY19197 Mus musculus partial Pax-6 gene for ... 64 1e-08
emb|Y19195.1|MMUY19195 Mus musculus partial Pax-6 gene for ... 64 1e-08
gb|L07483.1|HUMPBH3B Homo sapiens paired-box protein (PAX3)... 64 1e-08
dbj|D87837.1|D87837 Gallus gallus mRNA for PAX6 protein, co... 64 1e-08
emb|AJ223441.1|BFL223441 Branchiostoma floridae Pax6 gene (... 64 1e-08
gb|AF178854.1|AF178854 Synthetic construct Pax3-forkhead fu... 64 1e-08
ref|NM_013001.1| Rattus norvegicus Paired box homeotic gene... 64 1e-08
gb|U69644.1|RNU69644 Rattus norvegicus Pax-6 mRNA, comlete cds 64 1e-08
gb|AF154556.1|AF154556 Xenopus laevis paired domain transcr... 64 1e-08
emb|AJ223444.1|BFL223444 Branchiostoma floridae Pax6 gene (... 64 1e-08
gb|BC011953.1|BC011953 Homo sapiens, Similar to paired box ... 64 1e-08
ref|NM_000280.1| Homo sapiens paired box gene 6 (aniridia, ... 64 1e-08
gb|M93650.1|HUMPAX6AN Human paired box gene (PAX6) homologu... 64 1e-08
gb|M77842.1|MUSSEYA Mus musculus oculorhombin (Sey) mRNA, c... 64 1e-08
ref|NM_008936.1| Mus musculus paired like homeodomain facto... 64 1e-08
gb|U77946.1|MMU77946 Mus musculus pituitary specific homeod... 64 1e-08
emb|AJ223442.1|BFL223442 Branchiostoma floridae Pax6 gene (... 64 1e-08
gb|U77532.1|XLU77532 Xenopus laevis Pax6 mRNA, complete cds 64 1e-08
gb|U76386.1|XLU76386 Xenopus laevis paired-type homeodomain... 64 1e-08
gb|M14942.1|DROPRD92 D.melanogaster paired mRNA clone BSH9,... 64 1e-08
gb|AF154555.1|AF154555 Xenopus laevis paired domain transcr... 64 1e-08
dbj|AB002408.1|AB002408 Oryzias sp. mRNA for mdkPax-6, part... 64 1e-08
gb|AY047583.1| Homo sapiens paired box protein PAX6 (PAX6) ... 64 1e-08
gb|AY064175.1| Mus musculus Pax6 paired-less isoform mRNA, ... 64 1e-08
gb|AF154552.1|AF154552 Xenopus laevis paired domain transcr... 64 1e-08
ref|NM_013627.1| Mus musculus paired box gene 6 (Pax6), mRNA 64 1e-08
emb|X63963.1|MMPAX6PBP M.musculus pax-6 mRNA for paired box... 64 1e-08
emb|AJ223440.1|BFL223440 Branchiostoma floridae Pax6 gene (... 64 1e-08
gb|BC011272.1|BC011272 Mus musculus, clone MGC:18454 IMAGE:... 64 1e-08
ref|NM_001604.2| Homo sapiens paired box gene 6 (aniridia, ... 64 1e-08
gb|U64513.1|XLU64513 Xenopus laevis Xpax6 mRNA, complete cds 64 1e-08
ref|NM_131277.1| Danio rerio paired box gene 3 (pax3), mRNA 64 1e-08
gb|AF443223.1|AF443223 Mus musculus PAX6 mRNA, partial cds,... 64 1e-08
gb|AF014366.1|AF014366 Danio rerio transcription factor PAX... 64 1e-08
ref|NM_008781.1| Mus musculus paired box gene 3 (Pax3), mRNA 64 1e-08
emb|X59358.1|MMPAX3R Mouse Pax-3 gene for a DNA binding pro... 64 1e-08
emb|AJ327946.1|HSA327946 Homo sapiens genomic sequence surr... 63 2e-08
emb|Y19196.1|MMUY19196 Mus musculus partial Pax-6 gene for ... 63 2e-08
ref|NM_079110.1| Drosophila melanogaster Putative homeodoma... 63 2e-08
gb|M14548.1|DROPRD D.melanogaster paired gene (prd) encodin... 63 2e-08
gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome ... 63 2e-08
dbj|D84254.1|D84254 Halocynthia roretzi mRNA for Pax-37, co... 63 2e-08
gb|AE003634.1|AE003634 Drosophila melanogaster genomic scaf... 63 2e-08
dbj|AK018615.1|AK018615 Mus musculus adult male cecum cDNA,... 63 2e-08
ref|NM_013435.1| Homo sapiens retinal homeobox protein (RX)... 63 2e-08
gb|AF115392.1|AF115392 Homo sapiens retinal homeobox protei... 63 2e-08
gb|U14621.1|PLU14621 Paracentrotus lividus Pax-6 (suPax-6) ... 63 2e-08
ref|NM_078832.1| Drosophila melanogaster paired (prd), mRNA 63 2e-08
gb|AY059447.1| Drosophila melanogaster GH22686 full length ... 63 2e-08
gb|AF017273.1|AF017273 Xenopus laevis retinal homeobox 1 (X... 63 2e-08
emb|AJ007939.1|OLA7939 Oryzias latipes Rx2 gene 63 2e-08
emb|AJ250405.1|OLA250405 Oryzias latipes mRNA for Rx2 trans... 63 2e-08
ref|NM_054068.1| Mus musculus visual system homeobox 1 homo... 63 2e-08
gb|AY056825.1| Mus musculus transcription factor VSX1 (Vsx1... 63 2e-08
gb|AF264703.1|AF264703 Astyanax mexicanus retinal homeobox ... 63 2e-08
gb|AF391758.1|AF391758 Mus musculus homeodomain protein RIN... 63 2e-08
gb|AF133131.1|AF133131 Homo sapiens homeobox protein DUX5 (... 63 2e-08
dbj|AK019971.1|AK019971 Mus musculus 8 days embryo whole bo... 63 2e-08
ref|NM_012146.1| Homo sapiens double homeobox, 1 (DUX1), mRNA 63 2e-08
emb|AJ001481.1|HSRNADUX1 Homo sapiens mRNA for DUX1 protein 63 2e-08
gb|U81600.1|HSU81600 Homo sapiens paired-like homeodomain p... 63 2e-08
gb|AF001049.1|XLAF001049 Xenopus laevis retinal homeobox 2A... 63 2e-08
ref|NM_012149.1| Homo sapiens double homeobox, 5 (DUX5), mRNA 63 2e-08
emb|X79695.1|GGPRX2 G.gallus Prx-2 (S8) mRNA 63 2e-08
gb|AF251032.1|AF251032 Bos taurus homeodomain protein RINX ... 63 2e-08
gb|AF395732.1|AF395732 Mus musculus visual system homeobox ... 63 2e-08
emb|AJ289023.1|PDU289023 Platynereis dumerilii mRNA for hom... 63 2e-08
gb|AF001048.1|XLAF001048 Xenopus laevis retinal homeobox 1A... 63 2e-08
ref|NM_008759.1| Mus musculus OG9 homeobox gene (Og9x), mRNA 63 2e-08
ref|NM_131225.1| Danio rerio retinal homeobox gene 1 (rx1),... 62 3e-08
gb|AF001907.2|AF001907 Danio rerio retinal homeobox protein... 62 3e-08
gb|U59830.1|LOU59830 Loligo opalescens Pax-6 mRNA, complete... 62 3e-08
ref|XM_079956.1| Rx, mRNA 62 3e-08
gb|U31537.1|CEU31537 Caenorhabditis elegans variable abnorm... 62 3e-08
emb|Y09975.1|PMPAX6 P.mammillata mRNA for Pax-6 62 3e-08
emb|AJ223300.1|DMAJ3300 Drosophila melanogaster mRNA for ho... 62 3e-08
gb|U29145.1|CEU29145 Caenorhabditis elegans (mab-18) mRNA, ... 62 3e-08
emb|AJ299416.1|CIN299416 Ciona intestinalis mRNA for Prx1 t... 62 3e-08
ref|NM_077358.1| Caenorhabditis elegans 62 3e-08
dbj|D88738.1|D88738 African clawed frog mRNA for Xenopus Pa... 62 3e-08
gb|U29184.1|CEU29184 Caenorhabditis elegans (mab-18) mRNA, ... 62 3e-08
ref|NM_131226.1| Danio rerio retinal homeobox gene 2 (rx2),... 62 3e-08
gb|AF001908.1|AF001908 Danio rerio retinal homeobox protein... 62 3e-08
dbj|AB017633.1|AB017633 Dugesia japonica mRNA for Djrax, pa... 62 3e-08
ref|NM_077357.1| 'Paired box' domain, homeobox protein (pai... 62 3e-08
dbj|D88737.1|D88737 African clawed frog mRNA for Xenopus Pa... 62 3e-08
dbj|AB015750.1|AB015750 Gallus gallus mRNA for homeobox pro... 62 3e-08
gb|AF126249.1|AF126249 Hydra vulgaris homeobox protein mana... 62 4e-08
dbj|D13433.1|CHKPRX1 Gallus gallus paired-related homeobox ... 62 4e-08
gb|L06502.1|MUSMHOX Mus musculus MHox protein mRNA, complet... 62 4e-08
emb|X95594.1|LSPAX6GEN L.sanguineus pax6 gene 62 4e-08
gb|S69088.1|S69088 gMHox=homeobox [chickens, stage 17 embry... 62 4e-08
ref|NM_079889.1| Drosophila melanogaster eyeless (ey), mRNA 62 4e-08
emb|X79493.1|DMEYEL29 D.melanogaster ey mRNA (exons 2-9) 62 4e-08
ref|NM_006902.2| Homo sapiens paired mesoderm homeo box 1 (... 62 4e-08
gb|AF461698.1|AF461698 Gallus gallus paired-related homeobo... 62 4e-08
gb|U03873.1|MMU03873 Mus musculus homeobox (Pmx) mRNA, comp... 62 4e-08
emb|AJ223443.1|BFL223443 Branchiostoma floridae Pax6 gene (... 62 4e-08
ref|NM_022716.1| Homo sapiens paired mesoderm homeo box 1 (... 62 4e-08
dbj|AB079883.1| Ciona intestinalis mRNA for Pax6, complete cds 62 4e-08
dbj|AK019503.1|AK019503 Mus musculus 0 day neonate skin cDN... 62 4e-08
ref|NM_077964.1| Homeobox domain 62 4e-08
dbj|AK008428.1|AK008428 Mus musculus adult male small intes... 62 4e-08
ref|NM_011127.1| Mus musculus paired related homeobox 1 (Pr... 62 4e-08
emb|X59725.1|MMHOBOXG M.musculus mRNA for homeobox gene 62 4e-08
gb|M95929.1|HUMPHOX1A Human homeobox protein (PHOX1) mRNA, ... 62 4e-08
gb|S82911.1|S82911 rHox=rHox protein [rats, ROS 17/2.8 oste... 62 4e-08
emb|Y15516.1|HVY15516 Hydra vulgaris mRNA for prdl-b protei... 62 5e-08
emb|AJ250404.1|OLA250404 Oryzias latipes mRNA for Vsx2 tran... 62 5e-08
dbj|AB034245.1|AB034245 Danio rerio mtx1 mRNA, complete cds 62 5e-08
gb|U07056.1|CAU07056 Carassius auratus Vsx-1 homeobox prote... 62 5e-08
ref|NM_131462.1| Danio rerio C. elegans CEH-10 homeodomain-... 62 5e-08
gb|U62898.1|DRU62898 Danio rerio ALX (alx) mRNA, complete cds 62 5e-08
ref|NM_007701.1| Mus musculus C. elegans ceh-10 homeo domai... 62 5e-08
gb|L34808.1|MUSCHX10A Mus musculus (clone 6) homeobox prote... 62 5e-08
ref|NM_131333.1| Danio rerio visual system homeobox 1 prote... 62 5e-08
ref|XM_063425.1| Homo sapiens similar to Homeobox protein C... 62 5e-08
gb|AF025348.2|AF025348 Danio rerio paired-like homeobox pro... 62 5e-08
gb|AF004318.1|AF004318 Carassius auratus paired-like homeob... 62 5e-08
gb|U89921.1|MMU89921 Macaca mulatta putative homeobox prote... 62 5e-08
dbj|AB017632.1|AB017632 Dugesia japonica mRNA for DjPax-6, ... 61 6e-08
gb|AY069033.1| Drosophila melanogaster GH01528 full length ... 61 6e-08
gb|AY051487.1| Drosophila melanogaster GH14454 full length ... 61 6e-08
ref|NM_079899.1| Drosophila melanogaster twin of eyeless (t... 61 6e-08
gb|AF134350.1|AF134350 Drosophila melanogaster transcriptio... 61 6e-08
ref|NM_057982.1| Drosophila melanogaster PvuII-PstI homolog... 61 6e-08
dbj|D85080.1|D85080 Sea urchin homeobox (Spalx) mRNA, parti... 61 6e-08
emb|AJ238668.1|DME238668 Drosophila melanogaster mRNA for M... 61 6e-08
gb|AY028904.1| Girardia tigrina Pax6A mRNA, partial cds 61 6e-08
ref|XM_095347.1| Homo sapiens similar to Unc4.1 homeobox (C... 61 8e-08
emb|Y10299.1|DTPRD1 D.tigrina mRNA for DNA-binding protein 61 8e-08
gb|AF114441.1|AF114441 Hydra vulgaris homeobox protein Otx ... 61 8e-08
dbj|AK012493.1|AK012493 Mus musculus 11 days embryo whole b... 61 8e-08
ref|NM_000451.2| Homo sapiens short stature homeobox (SHOX)... 60 1e-07
ref|NM_007492.1| Mus musculus aristaless related homeobox g... 60 1e-07
dbj|AB006103.1|AB006103 Mus musculus mRNA for Arx homeoprot... 60 1e-07
gb|AF001393.1|AF001393 Oryzias latipes Medaka OG-12 (MOG-12... 60 1e-07
ref|NM_013665.1| Mus musculus short stature homeobox 2 (Sho... 60 1e-07
gb|U66918.1|MMU66918 Mus musculus OG-12a homeodomain protei... 60 1e-07
gb|U02308.1|HSU02308 Human PAX-3-FKHR gene fusion mRNA, par... 60 1e-07
ref|NM_013028.1| Rattus norvegicus Short stature homeobox 2... 60 1e-07
emb|AJ002259.1|RN2259 Rattus Norvegicus mRNA for Prx3A" pro... 60 1e-07
emb|AJ002258.1|RN2258 Rattus Norvegicus mRNA for Prx3A protein 60 1e-07
ref|NM_006883.1| Homo sapiens short stature homeobox (SHOX)... 60 1e-07
ref|NM_003030.2| Homo sapiens short stature homeobox 2 (SHO... 60 1e-07
gb|BC008829.1|BC008829 Homo sapiens, Similar to short statu... 60 1e-07
gb|AC087231.1|AC087231 Caenorhabditis briggsae cosmid CB034... 60 1e-07
emb|AJ002368.1|HSSHOTB Homo sapiens mRNA for homeobox prote... 60 1e-07
emb|Y11536.1|HSSHOXA H.sapiens mRNA for SHOXa protein 60 1e-07
ref|NM_006884.1| Homo sapiens short stature homeobox 2 (SHO... 60 1e-07
emb|AJ002367.1|HSSHOTA Homo sapiens mRNA for homeobox prote... 60 1e-07
gb|AF022654.1|AF022654 Homo sapiens homeodomain protein (OG... 60 1e-07
ref|XM_079165.1| aristaless, mRNA 60 1e-07
gb|L08401.1|DROPRDHBA Drosophila melanogaster prd-type home... 60 1e-07
ref|XM_030575.1| Homo sapiens short stature homeobox (SHOX)... 60 1e-07
gb|U02309.1|HSU02309 Human PAX-3 mRNA, partial cds 60 1e-07
gb|U67055.1|MMU67055 Mus musculus OG12b homeodomain protein... 60 1e-07
emb|AJ002260.1|RN2260 Rattus Norvegicus mRNA for Prx3B protein 60 1e-07
emb|Y11535.1|HSSHOXB H.sapiens mRNA for SHOXb protein 60 1e-07
gb|U89331.1|HSU89331 Human pseudoautosomal homeodomain-cont... 60 1e-07
ref|NM_077965.1| Homeobox domain 60 1e-07
gb|AF039155.1|AF039155 Homo sapiens chromosome 4 cosmid B2 ... 60 1e-07
gb|AF039154.1|AF039154 Homo sapiens chromosome 4 cosmid B2 ... 60 1e-07
gb|AF039151.1|AF039151 Homo sapiens chromosome 4 cosmid cT3... 60 1e-07
gb|AF039150.1|AF039150 Homo sapiens chromosome 4 cosmid cT3... 60 1e-07
gb|AF039153.1|AF039153 Homo sapiens chromosome 4 cosmid B2 ... 60 1e-07
gb|AF117653.2|AF117653 Homo sapiens double homeobox protein... 60 1e-07
gb|AY038071.1| Homo sapiens aristaless-related homeobox pro... 60 1e-07
gb|M85303.1|SCMSMOXIII Schistosoma mansoni paired-like home... 60 1e-07
gb|U85056.1|HSU85056 Homo sapiens FSHD-associated repeat DN... 60 1e-07
gb|AF081948.1|AF081948 Girardia tigrina homeobox protein (O... 60 1e-07
gb|AF283052.1|AF283052 Homo sapiens clone 10qtel_ctg0044_c2... 60 2e-07
gb|AF039158.1|AF039158 Homo sapiens chromosome 10 cosmid A6... 60 2e-07
gb|AF039157.1|AF039157 Homo sapiens chromosome 10 cosmid A6... 60 2e-07
gb|AF039156.1|AF039156 Homo sapiens chromosome 10 cosmid A6... 60 2e-07
gb|AF003151.3| Caenorhabditis elegans cosmid D1007, complet... 60 2e-07
ref|NM_131384.1| Danio rerio aristaless related homeobox ge... 60 2e-07
dbj|AB006104.1|AB006104 Danio rerio mRNA for Arx homeoprote... 60 2e-07
ref|XM_052976.1| Homo sapiens double homeobox, 4 (DUX4), mRNA 60 2e-07
gb|AF241311.1|AF241311 Acropora millepora transcription fac... 60 2e-07
gb|AF329211.1|AF329211 Homo sapiens clone 18qtel_c30t3 sequ... 60 2e-07
gb|AF272397.1|AF272397 Caenorhabditis elegans CEH-17 (ceh-1... 60 2e-07
gb|AY028079.1| Homo sapiens putative protein and FSHD Regio... 60 2e-07
ref|NM_058992.1| homeobox protein 60 2e-07
gb|U89918.1|MMU89918 Macaca mulatta homeobox protein putati... 59 2e-07
gb|AF315231.1|AF315231 Strongylocentrotus purpuratus goosec... 57 3e-07
gb|AF133130.1|AF133130 Homo sapiens homeobox protein DUX3 (... 59 3e-07
ref|NM_012148.1| Homo sapiens double homeobox, 3 (DUX3), mRNA 59 3e-07
gb|AF241310.1|AF241310 Acropora millepora transcription fac... 59 3e-07
emb|X60099.1|XLXANF1 X.laevis XANF-1 mRNA 59 3e-07
gb|U89920.1|MMU89920 Macaca mulatta putative homeobox prote... 59 4e-07
ref|NM_011097.1| Mus musculus paired-like homeodomain trans... 59 4e-07
gb|U71206.1|MMU71206 Mus musculus Ptx1 mRNA, complete cds 59 4e-07
dbj|AB008834.1|AB008834 Dugesia japonica DjotxA mRNA, compl... 59 4e-07
gb|U28370.1|XLU28370 Xenopus laevis homeobox protein (XANF-... 59 4e-07
gb|U54499.1|MMU54499 Mus musculus homeodomain protein POTX ... 59 4e-07
gb|BC012696.1|BC012696 Mus musculus, Similar to paired-like... 59 4e-07
gb|AF217647.1|AF217647 Xenopus laevis pituitary homeobox ge... 58 5e-07
ref|XM_067211.1| Homo sapiens similar to double homeobox, 4... 58 5e-07
ref|NM_011021.1| Mus musculus orthopedia homolog, (Drosophi... 58 5e-07
emb|AJ249563.1|PCA249563 Podocoryne carnea mRNA for paired ... 58 5e-07
emb|Y10413.1|MMORTHOPE M.musculus mRNA for OTP protein 58 5e-07
gb|AF146191.1|AF146191 Homo sapiens FRG1 (FRG1) gene, compl... 58 5e-07
gb|U18977.1|HSU18977 Human D4S2463 homeobox-like gene, part... 58 5e-07
ref|XM_096206.1| Homo sapiens similar to double homeobox, 4... 58 5e-07
gb|AC022370.28| Homo sapiens chromosome UL clone RP11-22O10... 58 5e-07
gb|AY069177.1| Drosophila melanogaster GH22493 full length ... 58 5e-07
gb|AF336056.1|AF336056 Pristina leidyi orthodenticle-like h... 58 5e-07
ref|NM_073118.1| Homeobox domain 58 5e-07
ref|NM_033178.1| Homo sapiens double homeobox, 4 (DUX4), mRNA 58 5e-07
ref|NM_017179.1| Rattus norvegicus Unc4.1 homeobox (C. eleg... 58 5e-07
dbj|D38024.1|HUMFSHD Human facioscapulohumeral muscular dys... 58 5e-07
dbj|D87748.1|D87748 Rattus norvegicus mRNA for paired-type ... 58 5e-07
ref|NM_032109.1| Homo sapiens orthopedia homolog (Drosophil... 58 5e-07
gb|BC001800.1|BC001800 Homo sapiens, orthopedia homolog, (D... 58 5e-07
gb|AF155206.1|AF155206 Xenopus laevis homeodomain transcrip... 58 5e-07
emb|AJ278330.1|XLA278330 Xenopus laevis mRNA for Pitx1 prot... 58 5e-07
gb|L32607.1|HUMHOMEC Human homeobox-like gene 58 5e-07
gb|AF247550.1|AF247550 Mus musculus UNC4 protein mRNA, comp... 58 7e-07
gb|M81481.1|XELGSCHB Xenopus laevis goosecoid homeobox prot... 58 7e-07
dbj|AB034246.1|AB034246 Danio rerio mRNA for Mtx2, complete... 58 7e-07
emb|Y17718.1|SSY17718 Sus scrofa mRNA for goosecoid protein... 58 7e-07
gb|M63872.1|XELHOMBXA X.laevis organizer specific homeobox ... 58 7e-07
ref|XM_080599.1| homeobrain, mRNA 58 7e-07
ref|NM_013702.1| Mus musculus Unc4.1 homeobox (C. elegans) ... 58 7e-07
ref|NM_065850.1| Caenorhabditis elegans 58 7e-07
emb|AJ001116.1|MMUNCX41 Mus musculus mRNA for Uncx4.1 protein 58 7e-07
gb|AF328499.1|AF328499 Homo sapiens clone 4qtel_2173_c8t7c1... 58 7e-07
gb|U65434.1|PWU65434 Pleurodeles waltl homeodomain-containi... 58 7e-07
gb|L03394.1|ZEFGHPA Brachydanio rerio goosecoid homeodomain... 58 7e-07
ref|NM_080164.1| Drosophila melanogaster homeobrain (hbn), ... 58 7e-07
emb|AJ276705.1|DME276705 Drosophila melanogaster mRNA for h... 58 7e-07
emb|Z96107.1|MMZ96107 Mus musculus mRNA for Uncx4.1 58 7e-07
emb|X70471.1|GDGOOSEC G.domesticus chicken goosecoid gene 58 7e-07
ref|NM_131017.1| Danio rerio goosecoid (gsc), mRNA 58 7e-07
emb|Y13150.1|MMGOOSEE Mus musculus mRNA for goosecoid homeo... 58 7e-07
gb|L03395.1|ZEFHDPB Brachydanio rerio goosecoid homeodomain... 58 7e-07
dbj|AB001938.1|AB001938 Cynops pyrrhogaster goosecoid mRNA,... 58 7e-07
gb|U65435.1|ABU65435 Acipenser baeri homeodomain-containing... 58 7e-07
emb|X99239.1|MMGSC M.muscsulus mRNA for goosecoid homeobox 58 7e-07
ref|XM_085071.1| Homo sapiens similar to HOMEOBOX PROTEIN G... 58 7e-07
ref|NM_010351.1| Mus musculus goosecoid (Gsc), mRNA 58 7e-07
emb|Y13149.1|MMGOOSED Mus musculus mRNA for goosecoid homeo... 58 7e-07
gb|U70370.1|HSU70370 Human hindlimb expressed homeobox prot... 57 9e-07
gb|AF039152.1|AF039152 Homo sapiens chromosome 4 cosmid cT3... 57 9e-07
ref|NM_053624.1| Rattus norvegicus paired-like homeodomain ... 57 9e-07
gb|BC009412.1|BC009412 Homo sapiens, paired-like homeodomai... 57 9e-07
dbj|AB047298.1|AB047298 Rattus norvegicus mRNA for Ptx1 hom... 57 9e-07
ref|NM_002653.1| Homo sapiens paired-like homeodomain trans... 57 9e-07
ref|NM_131100.1| Danio rerio orthopedia protein (otp), mRNA 57 9e-07
gb|AF071496.2|AF071496 Danio rerio orthopedia protein (Otp)... 57 9e-07
ref|XM_047747.3| Homo sapiens paired-like homeodomain trans... 57 9e-07
gb|BC003685.1|BC003685 Homo sapiens, paired-like homeodomai... 57 9e-07
gb|AF328511.1|AF328511 Homo sapiens clone 4qtel_2173c7t7_D4... 57 9e-07
gb|AF069397.1|AF069397 Gallus gallus paired-like homeodomai... 57 9e-07
gb|AF048722.1|AF048722 Homo sapiens ALL1 responsive protein... 57 1e-06
emb|AJ222971.1|RNPTX2A Rattus norvegicus mRNA for homeodoma... 57 1e-06
ref|NM_131349.1| Danio rerio homeo box (expressed in ES cel... 57 1e-06
ref|XM_045596.3| Homo sapiens paired-like homeodomain trans... 57 1e-06
gb|AF201091.1|AF201091 Mus musculus paired-like homeodomain... 57 1e-06
gb|AC004573.1|AC004573 Drosophila melanogaster, chromosome ... 57 1e-06
gb|U65433.1|DRU65433 Danio rerio homeodomain-containing pro... 57 1e-06
gb|AF077092.1|AF077092 Gallus gallus pituitary homeobox pro... 57 1e-06
gb|AF132447.1|AF132447 Danio rerio transcription factor Pit... 57 1e-06
gb|AF077767.1|AF077767 Xenopus laevis homeodomain transcrip... 57 1e-06
ref|NM_076636.1| homeobox protein 57 1e-06
ref|NM_011098.1| Mus musculus paired-like homeodomain trans... 57 1e-06
gb|BC011642.1|BC011642 Homo sapiens, Similar to paired-like... 57 1e-06
ref|NM_005029.1| Homo sapiens paired-like homeodomain trans... 57 1e-06
gb|AF048724.1|AF048724 Mus musculus ALL1 responsive protein... 57 1e-06
gb|AF048723.1|AF048723 Mus musculus ALL1 responsive protein... 57 1e-06
gb|AF041339.1|AF041339 Homo sapiens homeodomain protein (PI... 57 1e-06
gb|AF181681.2|AF181681 Danio rerio transcription factor Pit... 57 1e-06
gb|AF039832.1|AF039832 Rattus norvegicus homeobox protein (... 57 1e-06
ref|NM_010420.1| Mus musculus homeo box gene expressed in E... 57 1e-06
gb|U40720.1|MMU40720 Mus musculus anterior-restricted homeo... 57 1e-06
ref|NG_000669.1| Drosophila melanogaster PvuII-PstI homolog... 57 1e-06
gb|BC013998.1|BC013998 Homo sapiens, clone MGC:20144 IMAGE:... 57 1e-06
gb|U80011.1|MMU80011 Mus musculus pituitary homeobox 2 isof... 57 1e-06
ref|NM_130975.1| Danio rerio paired-like homeodomain transc... 57 1e-06
gb|AF336057.1|AF336057 Pristina leidyi orthodenticle-like h... 57 1e-06
gb|AF132446.1|AF132446 Danio rerio transcription factor Pit... 57 1e-06
ref|NM_079075.1| Drosophila melanogaster orthopedia (otp), ... 57 1e-06
gb|AF297713.1|AF297713 Xenopus laevis homeodomain transcrip... 57 1e-06
gb|AF156905.1|AF156905 Danio rerio transcription factor Pit... 57 1e-06
gb|AF076640.1|AF076640 Gallus gallus transcription factor P... 57 1e-06
emb|AJ005786.1|XLAJ5786 Xenopus laevis mRNA for XPtx2a home... 57 1e-06
gb|U80010.1|MMU80010 Mus musculus pituitary homeobox 2 isof... 57 1e-06
gb|AF048720.1|AF048720 Homo sapiens ALL1 responsive protein... 57 1e-06
dbj|AB050722.1| Paralichthys olivaceus pitx2 mRNA, complete... 57 1e-06
dbj|AB006320.1|AB006320 Mus musculus Brx1a mRNA for homeopr... 57 1e-06
ref|NM_008852.1| Mus musculus paired-like homeodomain trans... 57 1e-06
gb|AF005772.1|AF005772 Mus musculus homeobox protein Pitx3 ... 57 1e-06
gb|AF295531.1|AF295531 Hydra vulgaris aristaless-like prote... 57 1e-06
>ref|NM_013729.1| Mus musculus Mix1 homeobox-like 1 (Xenopus laevis) (Mixl1), mRNA
Length = 696
Score = 416 bits (1068), Expect = e-114
Identities = 207/231 (89%), Positives = 207/231 (89%)
Frame = +1
Query: 1 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 60
MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS
Sbjct: 1 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 180
Query: 61 SPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
SPTAQTPAGLD QRRKRTSF VFRQTMYPDIHLRERLA
Sbjct: 181 SPTAQTPAGLDPPGPSKGSAAPSAPQRRKRTSFSSEQLQLLELVFRQTMYPDIHLRERLA 360
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA 180
ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA
Sbjct: 361 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA 540
Query: 181 DVNHVPDPSMTGGGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF 231
DVNHVPDPSMTGGGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF
Sbjct: 541 DVNHVPDPSMTGGGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF 693
>gb|AF135063.1|AF135063 Mus musculus Mix-like homeobox protein (Mml) mRNA, complete cds
Length = 696
Score = 416 bits (1068), Expect = e-114
Identities = 207/231 (89%), Positives = 207/231 (89%)
Frame = +1
Query: 1 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 60
MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS
Sbjct: 1 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 180
Query: 61 SPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
SPTAQTPAGLD QRRKRTSF VFRQTMYPDIHLRERLA
Sbjct: 181 SPTAQTPAGLDPPGPSKGSAAPSAPQRRKRTSFSSEQLQLLELVFRQTMYPDIHLRERLA 360
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA 180
ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA
Sbjct: 361 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA 540
Query: 181 DVNHVPDPSMTGGGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF 231
DVNHVPDPSMTGGGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF
Sbjct: 541 DVNHVPDPSMTGGGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF 693
>gb|AF154573.1|AF154573 Mus musculus homeobox protein MIX (MIx) mRNA, complete cds
Length = 2295
Score = 416 bits (1068), Expect = e-114
Identities = 207/231 (89%), Positives = 207/231 (89%)
Frame = +2
Query: 1 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 60
MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS
Sbjct: 23 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 202
Query: 61 SPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
SPTAQTPAGLD QRRKRTSF VFRQTMYPDIHLRERLA
Sbjct: 203 SPTAQTPAGLDPPGPSKGSAAPSAPQRRKRTSFSSEQLQLLELVFRQTMYPDIHLRERLA 382
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA 180
ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA
Sbjct: 383 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA 562
Query: 181 DVNHVPDPSMTGGGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF 231
DVNHVPDPSMTGGGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF
Sbjct: 563 DVNHVPDPSMTGGGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF 715
>gb|AF201959.1|AF201959 Mus musculus Mix-related homeobox protein mRNA, partial cds
Length = 1945
Score = 394 bits (1012), Expect = e-108
Identities = 195/219 (89%), Positives = 195/219 (89%)
Frame = +2
Query: 13 EGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDX 72
EGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLD
Sbjct: 2 EGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDP 181
Query: 73 XXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQV 132
QRRKRTSF VFRQTMYPDIHLRERLAALTLLPESRIQV
Sbjct: 182 PGPSKGSAAPSAPQRRKRTSFSSEQLQLLELVFRQTMYPDIHLRERLAALTLLPESRIQV 361
Query: 133 WFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTG 192
WFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTG
Sbjct: 362 WFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTG 541
Query: 193 GGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF 231
GGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF
Sbjct: 542 GGVCTSGSQSFETYSSLSEDIGSKLDSWEEHIFSALGNF 658
>ref|NM_031944.1| Homo sapiens Mix-like homeobox protein 1 (MILD1), mRNA
Length = 699
Score = 264 bits (674), Expect = 5e-69
Identities = 143/233 (61%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Frame = +1
Query: 1 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 60
MA A S+ LQFAEGAAFP + A H GG LLP PA+ L AP PA F RD
Sbjct: 1 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP 180
Query: 61 SPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
P PA L QRRKRTSF VFR+T YPDIHLRERLA
Sbjct: 181 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA 360
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA 180
ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPL+ + HC APGTE +CLKPQLPLE
Sbjct: 361 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHC-APGTETKCLKPQLPLEV 537
Query: 181 DVNHVPDPSMTGGGVCTSGS--QSFETYSSLSEDIGSKLDSWEEHIFSALGNF 231
DVN +P+P+ GGG+ S S Q+FET S LSEDIGSKLDSWEEHIFSA GNF
Sbjct: 538 DVNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF 696
>gb|AF211891.1|AF211891 Homo sapiens Mix.1 homeobox-like protein (MIXL) mRNA, complete cds
Length = 699
Score = 264 bits (674), Expect = 5e-69
Identities = 143/233 (61%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Frame = +1
Query: 1 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 60
MA A S+ LQFAEGAAFP + A H GG LLP PA+ L AP PA F RD
Sbjct: 1 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP 180
Query: 61 SPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
P PA L QRRKRTSF VFR+T YPDIHLRERLA
Sbjct: 181 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA 360
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEA 180
ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPL+ + HC APGTE +CLKPQLPLE
Sbjct: 361 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHC-APGTETKCLKPQLPLEV 537
Query: 181 DVNHVPDPSMTGGGVCTSGS--QSFETYSSLSEDIGSKLDSWEEHIFSALGNF 231
DVN +P+P+ GGG+ S S Q+FET S LSEDIGSKLDSWEEHIFSA GNF
Sbjct: 538 DVNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF 696
>ref|XM_037300.5| Homo sapiens Mix-like homeobox protein 1 (MILD1), mRNA
Length = 693
Score = 228 bits (581), Expect = 3e-58
Identities = 129/232 (55%), Positives = 145/232 (61%), Gaps = 2/232 (0%)
Frame = +1
Query: 2 AAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSS 61
A S++L++ EGAAFP P H LLP PA+ L R RD+
Sbjct: 1 ATGESRELKYCEGAAFPSVPGPHTPVVLLPPAEPAAALLRCAARPRPSDLCGLSFGRDAL 180
Query: 62 PTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAA 121
+ P QRRKRTSF VFR+T YPDIHLRERLAA
Sbjct: 181 -APRRPLASHWLASPPKARRPVASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAA 357
Query: 122 LTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEAD 181
LTLLPESRIQVWFQNRRAKSRRQSGKSFQPL+ + HC APGTE +CLKPQLPLE D
Sbjct: 358 LTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHC-APGTETKCLKPQLPLEVD 534
Query: 182 VNHVPDPSMTGGGVCTSGS--QSFETYSSLSEDIGSKLDSWEEHIFSALGNF 231
VN +P+P+ GGG+ S S Q+FET S LSEDIGSKLDSWEEHIFSA GNF
Sbjct: 535 VNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF 690
>gb|AF218357.1|AF218357 Homo sapiens homeodomain protein MIX (MIX) gene, complete cds
Length = 4338
Score = 149 bits (377), Expect = 1e-34
Identities = 77/110 (70%), Positives = 85/110 (77%), Gaps = 2/110 (1%)
Frame = +2
Query: 124 LLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVN 183
LL QVWFQNRRAKSRRQSGKSFQPL+ + HC APGTE +CLKPQLPLE DVN
Sbjct: 2816 LLFSPLFQVWFQNRRAKSRRQSGKSFQPLARPEIILNHC-APGTETKCLKPQLPLEVDVN 2992
Query: 184 HVPDPSMTGGGVCTSGS--QSFETYSSLSEDIGSKLDSWEEHIFSALGNF 231
+P+P+ GGG+ S S Q+FET S LSEDIGSKLDSWEEHIFSA GNF
Sbjct: 2993 CLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF 3142
Score = 122 bits (307), Expect = 2e-26
Identities = 70/132 (53%), Positives = 74/132 (56%)
Frame = +1
Query: 1 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 60
MA A S+ LQFAEGAAFP + A H GG LLP PA+ L AP PA F RD
Sbjct: 1006 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP 1185
Query: 61 SPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
P PA L QRRKRTSF VFR+T YPDIHLRERLA
Sbjct: 1186 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA 1365
Query: 121 ALTLLPESRIQV 132
ALTLLPESRIQV
Sbjct: 1366 ALTLLPESRIQV 1401
>gb|U34615.1|GGU34615 Gallus gallus homeobox protein CMIX mRNA, complete cds
Length = 886
Score = 88.6 bits (218), Expect = 4e-16
Identities = 58/132 (43%), Positives = 68/132 (50%)
Frame = +2
Query: 15 AAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXX 74
A P P + P G+ L SG P + AP A+ P + +P+AQ
Sbjct: 32 AELPAVPPSCPPGRWLCGTAGGSG--GGPGAAPAPLASLP-PAAEGAPSAQ--------- 175
Query: 75 XXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWF 134
RRKRTSF VF+ TMYPDI+LRERLA T +PESRIQVWF
Sbjct: 176 ------------RRKRTSFTAAQLETLELVFQDTMYPDIYLRERLADATQIPESRIQVWF 319
Query: 135 QNRRAKSRRQSG 146
QNRRAKSRRQ G
Sbjct: 320 QNRRAKSRRQRG 355
>gb|M27063.1|XELMIX1HB Xenopus laevis homeobox protein (Mix.1) mRNA, complete cds
Length = 1653
Score = 84.7 bits (208), Expect = 5e-15
Identities = 66/187 (35%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
Frame = +3
Query: 6 SQQLQFAEGAAFPIFPAAHPGGQLLPAMRP-ASGL-PAAPHD----------SRAPAATQ 53
SQQL+ + F P P G P ++P A L PAA D ++ P A +
Sbjct: 81 SQQLEDLYPSCFS--PCPSPLGFSEPVIQPFAMNLAPAAQKDFQQHPNRREVTKIPGAGE 254
Query: 54 CFPNRDSSPT-AQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPD 112
P ++ P A P D QRRKRT F F+ MYPD
Sbjct: 255 QSPVQNVRPKDAINPKEADPRSPTADASLVPASQRRKRTFFTQAQLDILEQFFQTNMYPD 434
Query: 113 IHLRERLAALTLLPESRIQVWFQNRRAKSRRQSGKSFQPL----------SSRRGVFLHC 162
IH RE LA +PESRIQVWFQNRRAK RRQ K+ +P+ + R +F
Sbjct: 435 IHHREELARHIYIPESRIQVWFQNRRAKVRRQGAKATKPILAGHHYSGTSGANRAMFPSA 614
Query: 163 PAPGTEA 169
PAP + +
Sbjct: 615 PAPNSSS 635
>emb|AJ004903.1|GGJ004903 Gallus gallus mRNA for CMIX homeobox gene, partial cds
Length = 409
Score = 84.0 bits (206), Expect = 9e-15
Identities = 41/59 (69%), Positives = 45/59 (75%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRRKRTSF VF+ TMYPDI+LRERLA T +PESRIQVWFQNRRAKSRR+
Sbjct: 9 QRRKRTSFTAAQLETLELVFQDTMYPDIYLRERLADATQIPESRIQVWFQNRRAKSRRR 185
>ref|NM_130940.1| Danio rerio mixer (mix), mRNA
Length = 1494
Score = 79.7 bits (195), Expect = 2e-13
Identities = 41/62 (66%), Positives = 45/62 (72%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RRKRT+F V+ T YPDI+LRE+L ALT LPESRIQVWFQNRRAKSRRQ G
Sbjct: 314 RRKRTNFTQQQIDVLEKVYLDTKYPDIYLREKLEALTGLPESRIQVWFQNRRAKSRRQVG 493
Query: 147 KS 148
S
Sbjct: 494 IS 499
>gb|AF121771.1|AF121771 Danio rerio homeodomain transcription factor Mixer (mix) mRNA,
complete cds
Length = 1494
Score = 79.7 bits (195), Expect = 2e-13
Identities = 41/62 (66%), Positives = 45/62 (72%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RRKRT+F V+ T YPDI+LRE+L ALT LPESRIQVWFQNRRAKSRRQ G
Sbjct: 314 RRKRTNFTQQQIDVLEKVYLDTKYPDIYLREKLEALTGLPESRIQVWFQNRRAKSRRQVG 493
Query: 147 KS 148
S
Sbjct: 494 IS 499
>gb|U50745.1|XLU50745 Xenopus laevis homeobox protein Mix.2 mRNA, complete cds
Length = 1110
Score = 78.2 bits (191), Expect = 5e-13
Identities = 43/91 (47%), Positives = 51/91 (55%), Gaps = 7/91 (7%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRRKRT F F+ MYPDIH RE LA +PESRIQVWFQNRRAK RRQ
Sbjct: 280 QRRKRTFFTQAQLDILEQFFQTNMYPDIHHREELARHIYIPESRIQVWFQNRRAKVRRQG 459
Query: 146 GKSFQPL-------SSRRGVFLHCPAPGTEA 169
K+ +P S+ +F PAP + +
Sbjct: 460 AKATKPALASHHYSSTSGAMFPSAPAPNSSS 552
>gb|AF076215.1|AF076215 Homo sapiens prophet of Pit1 (PROP1) mRNA, complete cds
Length = 1463
Score = 77.0 bits (188), Expect = 1e-12
Identities = 49/128 (38%), Positives = 59/128 (45%)
Frame = +1
Query: 26 GGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXXXXXXXXX 85
G LLP PA+G P DS AP + P + +P G
Sbjct: 361 GSSLLPERHPATGTPTTTVDSSAPPCRR-LPGAGGGRSRFSPQG--------GQRGRPHS 513
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F F + YPDI RE LA T L E+RIQVWFQNRRAK R+Q
Sbjct: 514 RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 693
Query: 146 GKSFQPLS 153
QPL+
Sbjct: 694 RSLLQPLA 717
>ref|NM_006261.1| Homo sapiens prophet of Pit1, paired-like homeodomain transcription
factor (PROP1), mRNA
Length = 681
Score = 77.0 bits (188), Expect = 1e-12
Identities = 49/128 (38%), Positives = 59/128 (45%)
Frame = +1
Query: 26 GGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXXXXXXXXX 85
G LLP PA+G P DS AP + P + +P G
Sbjct: 52 GSSLLPERHPATGTPTTTVDSSAPPCRR-LPGAGGGRSRFSPQG--------GQRGRPHS 204
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F F + YPDI RE LA T L E+RIQVWFQNRRAK R+Q
Sbjct: 205 RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 384
Query: 146 GKSFQPLS 153
QPL+
Sbjct: 385 RSLLQPLA 408
>gb|AF005999.1|AF005999 Xenopus laevis homeobox protein (milk) mRNA, complete cds
Length = 1535
Score = 73.2 bits (178), Expect = 2e-11
Identities = 36/65 (55%), Positives = 42/65 (64%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RRKRT + F+ MYPDIH RE LA LPESRIQVWFQNRR+K+RRQ
Sbjct: 310 RRKRTVYSPSDLALLEQYFQTNMYPDIHQREELARQMGLPESRIQVWFQNRRSKARRQGS 489
Query: 147 KSFQP 151
+S +P
Sbjct: 490 RSTKP 504
>gb|AF043740.1|AF043740 Branchiostoma floridae amphioxus Otx transcription factor (Otx)
mRNA, complete cds
Length = 2436
Score = 72.8 bits (177), Expect = 2e-11
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q+
Sbjct: 257 QRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQA 436
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEAD--VNHVPDP-SMTGGGVCTSGSQS 202
G++ +P ++ P TE + + P +D V+ P P ++T G S + +
Sbjct: 437 GQA-KPRPKKKSA--SPPPASTEEQAPTSESPSCSDTSVSSTPVPVAVTIGNTNASPTAA 607
Query: 203 FETYS--------SLSEDIGS 215
T S S++ D+GS
Sbjct: 608 VSTSSIWSPASAPSVTSDLGS 670
>gb|AF079560.1|AF079560 Xenopus laevis homeobox protein BIX2 (Bix2) mRNA, complete cds
Length = 1533
Score = 72.0 bits (175), Expect = 3e-11
Identities = 35/65 (53%), Positives = 42/65 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RR+RT + F+ MYPDIH RE LA LPESRIQVWFQNRR+K+RRQ
Sbjct: 305 RRRRTVYSPSDLARLEQYFQTNMYPDIHQREELARQMGLPESRIQVWFQNRRSKARRQGS 484
Query: 147 KSFQP 151
+S +P
Sbjct: 485 RSTKP 499
>gb|AF079562.1|AF079562 Xenopus laevis homeobox protein BIX4 (Bix4) mRNA, complete cds
Length = 1461
Score = 72.0 bits (175), Expect = 3e-11
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RR+RT + F+ MYPDIH RE +A LPESR+QVWFQNRR+K+RRQ
Sbjct: 277 RRRRTVYSPSDLARLEQNFQTNMYPDIHQREEMARQMGLPESRVQVWFQNRRSKARRQGS 456
Query: 147 KSFQPLS----------SRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGG 194
+S +P +C +P + R L Q PL A +++ P++T G
Sbjct: 457 RSTKPAGVGDYYNSTPMYNPAPTANCTSPVAQQRMLSYQQPL-ATLHYGFHPNVTMQG 627
>gb|AF081351.1|AF081351 Xenopus laevis homeodomain protein Mix.4 mRNA, complete cds
Length = 1443
Score = 71.6 bits (174), Expect = 5e-11
Identities = 35/62 (56%), Positives = 40/62 (64%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RRKRT + FR MYPDIH RE +A LPESRIQVWFQNRR+K+RRQ
Sbjct: 256 RRKRTVYSPSDLARLEQYFRTNMYPDIHQREEMARQMGLPESRIQVWFQNRRSKARRQGS 435
Query: 147 KS 148
+S
Sbjct: 436 RS 441
>gb|AF079559.1|AF079559 Xenopus laevis homeobox protein BIX1 (Bix1) mRNA, complete cds
Length = 1504
Score = 71.6 bits (174), Expect = 5e-11
Identities = 35/62 (56%), Positives = 40/62 (64%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RRKRT + FR MYPDIH RE +A LPESRIQVWFQNRR+K+RRQ
Sbjct: 304 RRKRTVYSPSDLARLEQYFRTNMYPDIHQREEMARQMGLPESRIQVWFQNRRSKARRQGS 483
Query: 147 KS 148
+S
Sbjct: 484 RS 489
>ref|NM_053869.1| Rattus norvegicus aristaless (Drosophila) homeobox (Arix), mRNA
Length = 1608
Score = 70.9 bits (172), Expect = 8e-11
Identities = 63/188 (33%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Frame = +2
Query: 13 EGAAFPIFPA-AHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPN--RDSSPTAQT--- 66
E +A+ F A + PGG +RPA PAA A ++ C RD P +
Sbjct: 245 EASAYGDFGACSQPGGFQYSPLRPA--FPAAGPPCPALGSSNCALGALRDHQPAPYSAVP 418
Query: 67 ------PAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
P+GL QRR RT+F VF +T YPDI+ RE LA
Sbjct: 419 YKFFPEPSGLHEKRK----------QRRIRTTFTSAQLKELERVFAETHYPDIYTREELA 568
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARC-LKPQLPLE 179
L E+R+QVWFQNRRAK R+Q + ++ +G A EARC + E
Sbjct: 569 LKIDLTEARVQVWFQNRRAKFRKQ-----ERAATAKGAAGATGAKKGEARCSSEDDDSKE 733
Query: 180 ADVNHVPD 187
+ +H PD
Sbjct: 734 STCSHTPD 757
>gb|U25967.1|RNU25967 Rattus norvegicus Arix1 homeodomain protein mRNA, complete cds
Length = 1608
Score = 70.9 bits (172), Expect = 8e-11
Identities = 63/188 (33%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Frame = +2
Query: 13 EGAAFPIFPA-AHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPN--RDSSPTAQT--- 66
E +A+ F A + PGG +RPA PAA A ++ C RD P +
Sbjct: 245 EASAYGDFGACSQPGGFQYSPLRPA--FPAAGPPCPALGSSNCALGALRDHQPAPYSAVP 418
Query: 67 ------PAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
P+GL QRR RT+F VF +T YPDI+ RE LA
Sbjct: 419 YKFFPEPSGLHEKRK----------QRRIRTTFTSAQLKELERVFAETHYPDIYTREELA 568
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARC-LKPQLPLE 179
L E+R+QVWFQNRRAK R+Q + ++ +G A EARC + E
Sbjct: 569 LKIDLTEARVQVWFQNRRAKFRKQ-----ERAATAKGAAGATGAKKGEARCSSEDDDSKE 733
Query: 180 ADVNHVPD 187
+ +H PD
Sbjct: 734 STCSHTPD 757
>gb|AF081350.1|AF081350 Xenopus laevis homeodomain protein Mix.3 mRNA, complete cds
Length = 1597
Score = 70.5 bits (171), Expect = 1e-10
Identities = 34/62 (54%), Positives = 38/62 (60%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRRKRT + F+ MYPDIH RE LA +PESR+QVWFQNRRAK RR
Sbjct: 328 QRRKRTFYSQNKLDVLEQFFQTNMYPDIHHREELAKRIYIPESRVQVWFQNRRAKERRDK 507
Query: 146 GK 147
K
Sbjct: 508 AK 513
>gb|AY029294.1| Xenopus laevis transcription factor Otx1 (Otx1) mRNA, complete cds
Length = 2174
Score = 70.5 bits (171), Expect = 1e-10
Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 266 QRRERTTFTRSQLDVLESLFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 445
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQL-PLEADVNHVPDPSMTGGGVCTSGSQSFE 204
+ Q SS G ++R K + P T V +SGS S
Sbjct: 446 QQQQQQQSS--------SGAGVKSRPAKKKCSPARESSGSESSGQFTPPAVSSSGSSSSS 601
Query: 205 TYSS 208
+ SS
Sbjct: 602 SSSS 613
>gb|AF068263.1|AF068263 Xenopus laevis Mix-like endodermal regulator (Mixer) mRNA, complete
cds
Length = 1457
Score = 70.5 bits (171), Expect = 1e-10
Identities = 34/62 (54%), Positives = 38/62 (60%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRRKRT + F+ MYPDIH RE LA +PESR+QVWFQNRRAK RR
Sbjct: 314 QRRKRTFYSQNKLDVLEQFFQTNMYPDIHHREELAKRIYIPESRVQVWFQNRRAKERRDK 493
Query: 146 GK 147
K
Sbjct: 494 AK 499
>ref|NM_005169.1| Homo sapiens aristaless homeobox (Drosophila) (ARIX), mRNA
Length = 1026
Score = 70.5 bits (171), Expect = 1e-10
Identities = 60/171 (35%), Positives = 77/171 (44%), Gaps = 12/171 (7%)
Frame = +1
Query: 13 EGAAFPIFPA-AHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPN--RDSSPTAQT--- 66
E +A+ F A + PGG +RPA PAA A ++ C RD P +
Sbjct: 220 EASAYGDFGACSQPGGFQYSPLRPA--FPAAGPPCPALGSSNCALGALRDHQPAPYSAVP 393
Query: 67 ------PAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
P+GL QRR RT+F VF +T YPDI+ RE LA
Sbjct: 394 YNFFPEPSGLHEKRK----------QRRIRTTFTSAQLKELERVFAETHYPDIYTREELA 543
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARC 171
L E+R+QVWFQNRRAK R+Q + +S +G A EARC
Sbjct: 544 LKIDLTEARVQVWFQNRRAKFRKQ-----ERAASAKGAAGAAGAKKGEARC 681
>emb|AJ278856.1|PDU78856 Platynereis dumerilii mRNA for Otx homeobox transcription factor
Length = 701
Score = 70.5 bits (171), Expect = 1e-10
Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F++T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 289 QRRERTTFTRAQLDVLESLFQKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 468
Query: 146 GKSFQPLSSRRGVFLHCPAPG-----TEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGS 200
+ R P PG A V P P++ G G SG
Sbjct: 469 KAQDGRNPASRPKKSKSPTPGDVSPVNNNTSSDSSYKTVAPVTSTPTPTVNGMGSAGSGG 648
Query: 201 QS 202
S
Sbjct: 649 GS 654
>emb|AJ251846.1|XLA251846 Xenopus laevis mRNA for OTX5b protein (otx5b gene)
Length = 1575
Score = 70.5 bits (171), Expect = 1e-10
Identities = 47/134 (35%), Positives = 59/134 (43%)
Frame = +3
Query: 69 GLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPES 128
G+D QRR+RT+F +F +T YPDI +RE +A LPES
Sbjct: 351 GMDLLHSAVGYPTNPRKQRRERTTFTRAQLDILESLFAKTRYPDIFMREEVALKINLPES 530
Query: 129 RIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDP 188
R+QVWF+NRRAK R+Q +S R PA T + EA N P
Sbjct: 531 RVQVWFKNRRAKCRQQQQQSTGQAKPRPAKKKTSPARETNS---------EASTNGQYSP 683
Query: 189 SMTGGGVCTSGSQS 202
G V S S S
Sbjct: 684 PPPGTAVTPSSSAS 725
>ref|XM_084561.1| Homo sapiens aristaless homeobox (Drosophila) (ARIX), mRNA
Length = 1678
Score = 70.5 bits (171), Expect = 1e-10
Identities = 60/171 (35%), Positives = 77/171 (44%), Gaps = 12/171 (7%)
Frame = +1
Query: 13 EGAAFPIFPA-AHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPN--RDSSPTAQT--- 66
E +A+ F A + PGG +RPA PAA A ++ C RD P +
Sbjct: 220 EASAYGDFGACSQPGGFQYSPLRPA--FPAAGPPCPALGSSNCALGALRDHQPAPYSAVP 393
Query: 67 ------PAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
P+GL QRR RT+F VF +T YPDI+ RE LA
Sbjct: 394 YKFFPEPSGLHEKRK----------QRRIRTTFTSAQLKELERVFAETHYPDIYTREELA 543
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARC 171
L E+R+QVWFQNRRAK R+Q + +S +G A EARC
Sbjct: 544 LKIDLTEARVQVWFQNRRAKFRKQ-----ERAASAKGAAGAAGAKKGEARC 681
>ref|NM_008887.1| Mus musculus aristaless homeobox gene homolog (Drosophila) (Arix),
mRNA
Length = 1463
Score = 70.1 bits (170), Expect = 1e-10
Identities = 60/171 (35%), Positives = 77/171 (44%), Gaps = 12/171 (7%)
Frame = +1
Query: 13 EGAAFPIFPA-AHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPN--RDSSPTAQT--- 66
E +A+ F A + PGG +RPA PAA A ++ C RD P +
Sbjct: 76 EASAYGDFGACSQPGGFQYSPLRPA--FPAAGPPCPALGSSNCALGALRDHQPAPYSAVP 249
Query: 67 ------PAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
P+GL QRR RT+F VF +T YPDI+ RE LA
Sbjct: 250 YKFFPEPSGLHEKRK----------QRRIRTTFTSAQLKELERVFAETHYPDIYTREELA 399
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARC 171
L E+R+QVWFQNRRAK R+Q + +S +G A EARC
Sbjct: 400 LKIDLTEARVQVWFQNRRAKFRKQ-----ERAASAKGAAGATGAKKGEARC 537
>emb|X75014.1|MMPHOXH M.musculus Phox2 mRNA for homeodomain protein
Length = 1463
Score = 70.1 bits (170), Expect = 1e-10
Identities = 60/171 (35%), Positives = 77/171 (44%), Gaps = 12/171 (7%)
Frame = +1
Query: 13 EGAAFPIFPA-AHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPN--RDSSPTAQT--- 66
E +A+ F A + PGG +RPA PAA A ++ C RD P +
Sbjct: 76 EASAYGDFGACSQPGGFQYSPLRPA--FPAAGPPCPALGSSNCALGALRDHQPAPYSAVP 249
Query: 67 ------PAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLA 120
P+GL QRR RT+F VF +T YPDI+ RE LA
Sbjct: 250 YKFFPEPSGLHEKRK----------QRRIRTTFTSAQLKELERVFAETHYPDIYTREELA 399
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARC 171
L E+R+QVWFQNRRAK R+Q + +S +G A EARC
Sbjct: 400 LKIDLTEARVQVWFQNRRAKFRKQ-----ERAASAKGAAGATGAKKGEARC 537
>gb|AY040861.1| Scyliorhinus canicula homeobox protein Otx5 (Otx5) mRNA, complete
cds
Length = 873
Score = 70.1 bits (170), Expect = 1e-10
Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Frame = +1
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 52 TGPGMDLLHSAVGYQTTPRKQRRERTTFTRAQLDILESLFAKTRYPDIFMREEVALKINL 231
Query: 126 PESRIQVWFQNRRAKSRRQSGKSFQPLSSR----------------RGVFLHCPAP---- 165
PESR+QVWF+NRRAK R+Q +S +R G + P P
Sbjct: 232 PESRVQVWFKNRRAKCRQQQQQSSGQAKARPTKKKTSPTRDTSSETNGNGHYSPTPPGAA 411
Query: 166 GTEARCLKPQLPL--EADVNHVPDPSMTGGGVCTSGSQSFE-TYS 207
GT + + + A ++ +PDP + C S ++ TYS
Sbjct: 412 GTPSSISNATVSIWSPASISPIPDPLSSSTASCMQRSAAYPMTYS 546
>ref|NM_059845.1| homeobox protein (otd subfamily)
Length = 1041
Score = 69.3 bits (168), Expect = 2e-10
Identities = 34/65 (52%), Positives = 40/65 (61%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPD++ RE LAA LPE R+QVWFQNRRAK RRQ
Sbjct: 388 QRRNRTTFTTFQLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQVWFQNRRAKFRRQE 567
Query: 146 GKSFQ 150
+ Q
Sbjct: 568 KQDCQ 582
>gb|AF178670.1|AF178670 Gallus gallus homeobox protein Chx10-1 (chx10-1) mRNA, complete cds
Length = 1996
Score = 69.3 bits (168), Expect = 2e-10
Identities = 47/126 (37%), Positives = 61/126 (48%)
Frame = +2
Query: 19 IFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXX 78
+ PA P LLPA P G P P PAA + +++S+ + +G D
Sbjct: 341 LLPAPLP---LLPARGPRPGPPGPP-----PAARR---HKESASDEDSLSG-DASELKMP 484
Query: 79 XXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRR 138
+RR RT F F + YPD++ RE LA T LPE RIQVWFQNRR
Sbjct: 485 ASQIKRKKRRHRTVFTAHQLEELEKAFNEAHYPDVYAREMLAVKTELPEDRIQVWFQNRR 664
Query: 139 AKSRRQ 144
AK R++
Sbjct: 665 AKWRKR 682
>gb|L26509.1|XELORTHOAA Xenopus laevis orthodenticle-A like protein (otxA) mRNA, 5'end
Length = 498
Score = 68.9 bits (167), Expect = 3e-10
Identities = 35/85 (41%), Positives = 47/85 (55%)
Frame = +1
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T +G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 244 TASGMDLLHQSVGYPATPRKQRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINL 423
Query: 126 PESRIQVWFQNRRAKSRRQSGKSFQ 150
PESR+QVWF+NRRAK R+Q + Q
Sbjct: 424 PESRVQVWFKNRRAKCRQQQQQQQQ 498
>gb|AF129932.1|AF129932 Herdmania curvata homeobox protein Otx mRNA, complete cds
Length = 2395
Score = 68.9 bits (167), Expect = 3e-10
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 352 QRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 531
Query: 146 GKSFQPLSSRRG 157
+ Q +++ G
Sbjct: 532 QQQQQKQTNKSG 567
>gb|AE003466.1|AE003466 Drosophila melanogaster genomic scaffold 142000013386038 section 15 of
15, complete sequence
Length = 283099
Score = 68.6 bits (166), Expect = 4e-10
Identities = 34/68 (50%), Positives = 41/68 (60%)
Frame = -1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPD++ RE LA T L E+RIQVWF NRRA+ R+ S
Sbjct: 22315 QRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHS 22136
Query: 146 GKSFQPLS 153
G S LS
Sbjct: 22135 GGSNSGLS 22112
Score = 65.1 bits (157), Expect = 4e-09
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F +F +T YPD++ RE LA T L E+R+QVWF NRRA+ R+Q
Sbjct: 44180 QRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQL 44359
Query: 146 G----KSFQPLSSRRG 157
SF P S+ G
Sbjct: 44360 NTQQVPSFAPTSTSFG 44407
>dbj|AB034702.1|AB034702 Xenopus laevis Xotx5 mRNA, complete cds
Length = 1310
Score = 68.6 bits (166), Expect = 4e-10
Identities = 45/132 (34%), Positives = 58/132 (43%)
Frame = +2
Query: 69 GLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPES 128
G+D QRR+RT+F +F +T YPDI +RE +A LPES
Sbjct: 227 GMDLLHSAVGYPTTPRKQRRERTTFTRAQLDILESLFAKTRYPDIFMREEVALKINLPES 406
Query: 129 RIQVWFQNRRAKSRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDP 188
R+QVWF+NRRAK R+Q +S R PA T + EA N P
Sbjct: 407 RVQVWFKNRRAKCRQQQQQSTGQAKPRPAKKKTSPARETNS---------EASTNGQYSP 559
Query: 189 SMTGGGVCTSGS 200
G V S +
Sbjct: 560 PPPGTAVTPSST 595
>gb|AC007582.7| Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone
BACR17E16, complete sequence
Length = 180162
Score = 68.6 bits (166), Expect = 4e-10
Identities = 34/68 (50%), Positives = 41/68 (60%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPD++ RE LA T L E+RIQVWF NRRA+ R+ S
Sbjct: 150784 QRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHS 150963
Query: 146 GKSFQPLS 153
G S LS
Sbjct: 150964 GGSNSGLS 150987
Score = 65.1 bits (157), Expect = 4e-09
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = -3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F +F +T YPD++ RE LA T L E+R+QVWF NRRA+ R+Q
Sbjct: 128920 QRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQL 128741
Query: 146 G----KSFQPLSSRRG 157
SF P S+ G
Sbjct: 128740 NTQQVPSFAPTSTSFG 128693
>gb|AY036005.1| Danio rerio orthodenticle-related homeobox 5 mRNA, complete cds
Length = 1411
Score = 68.6 bits (166), Expect = 4e-10
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 27/169 (15%)
Frame = +1
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 271 TGTGMDLLHSAVGYPNTPRKQRRERTTFTRAQLDVLEALFSKTRYPDIFMREEVALKINL 450
Query: 126 PESRIQVWFQNRRAKSRRQ----------------------SGKSFQPLSSRRGVFL-HC 162
PESR+QVWF+NRRAK R+Q + +P +S G +
Sbjct: 451 PESRVQVWFKNRRAKCRQQQQQQTSGQTKPRPPKKKSSPARDSSASEPSASTNGPYSPPP 630
Query: 163 PAPGT----EARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFETYS 207
P PGT + + A ++ +PDP C S TYS
Sbjct: 631 PPPGTAITPSSSSATVSIWSPASISPLPDPLSAPSTACLQRSSYPMTYS 777
>gb|AY071593.1| Drosophila melanogaster RE64348 full length cDNA
Length = 2250
Score = 68.6 bits (166), Expect = 4e-10
Identities = 34/68 (50%), Positives = 41/68 (60%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPD++ RE LA T L E+RIQVWF NRRA+ R+ S
Sbjct: 864 QRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHS 1043
Query: 146 GKSFQPLS 153
G S LS
Sbjct: 1044GGSNSGLS 1067
>emb|Z46972.1|XLOTXNUC X.laevis mRNA for homeobox protein
Length = 867
Score = 68.6 bits (166), Expect = 4e-10
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = +1
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T +G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 52 TASGMDLLHQSVGYPATPRKQRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINL 231
Query: 126 PESRIQVWFQNRRAKSRRQ 144
PESR+QVWF+NRRAK R+Q
Sbjct: 232 PESRVQVWFKNRRAKCRQQ 288
>emb|AJ000939.1|OLJ000939 Oryzias latipes, Otx2 gene
Length = 543
Score = 68.2 bits (165), Expect = 5e-10
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = +1
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T +G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 52 TTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINL 231
Query: 126 PESRIQVWFQNRRAKSRRQ 144
PESR+QVWF+NRRAK R+Q
Sbjct: 232 PESRVQVWFKNRRAKCRQQ 288
>dbj|D26173.1|ZEFOTX2 Zebrafish otx2 mRNA for otx homeoprotein, complete cds
Length = 948
Score = 68.2 bits (165), Expect = 5e-10
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = +1
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T +G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 130 TTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINL 309
Query: 126 PESRIQVWFQNRRAKSRRQ 144
PESR+QVWF+NRRAK R+Q
Sbjct: 310 PESRVQVWFKNRRAKCRQQ 366
>gb|AF461038.1|AF461038 Gallus gallus paired-type homeobox Atx mRNA, partial cds
Length = 908
Score = 68.2 bits (165), Expect = 5e-10
Identities = 40/106 (37%), Positives = 59/106 (54%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F++T YPD+ +RERLA T LPE+R+QVWF+NRRAK R++
Sbjct: 199 QRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQ 378
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMT 191
+S Q ++ C + +E + P L ++ +PD T
Sbjct: 379 -RSLQKEQLQKQ--KDCESSHSEGKTEPPVLETQST---IPDTEKT 498
>gb|U19813.1|XLXOTX2S1 Xenopus laevis homeobox protein orthodenticle 2 (Xotx2) mRNA,
complete cds
Length = 1264
Score = 68.2 bits (165), Expect = 5e-10
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = +3
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T +G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 264 TTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINL 443
Query: 126 PESRIQVWFQNRRAKSRRQ 144
PESR+QVWF+NRRAK R+Q
Sbjct: 444 PESRVQVWFKNRRAKCRQQ 500
>gb|U29174.1|RNU29174 Rattus norvegicus paired-like homeodomain transcription factor
(DRG11) mRNA, complete cds
Length = 2399
Score = 68.2 bits (165), Expect = 5e-10
Identities = 42/114 (36%), Positives = 57/114 (49%), Gaps = 10/114 (8%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRR-Q 144
QRR RT+F VF QT YPD+ RE LA L E+R+QVWFQNRRAK R+ +
Sbjct: 375 QRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTE 554
Query: 145 SGKSFQPLSSRRGVF---------LHCPAPGTEARCLKPQLPLEADVNHVPDPS 189
G S Q ++ + ++ P PG +AR K L + + P+
Sbjct: 555 RGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARGKKEALEAQQSLGRTVGPA 716
>ref|NM_131251.1| Danio rerio orthodenticle homolog 2 (otx2), mRNA
Length = 2161
Score = 68.2 bits (165), Expect = 5e-10
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = +3
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T +G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 315 TTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINL 494
Query: 126 PESRIQVWFQNRRAKSRRQ 144
PESR+QVWF+NRRAK R+Q
Sbjct: 495 PESRVQVWFKNRRAKCRQQ 551
>gb|U14592.1|DRU14592 Danio rerio orthodenticle-related protein 1 (zOtx2) mRNA, complete
cds
Length = 2161
Score = 68.2 bits (165), Expect = 5e-10
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = +3
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T +G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 315 TTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINL 494
Query: 126 PESRIQVWFQNRRAKSRRQ 144
PESR+QVWF+NRRAK R+Q
Sbjct: 495 PESRVQVWFKNRRAKCRQQ 551
>gb|BC017609.1|BC017609 Mus musculus, clone MGC:27657 IMAGE:4527414, mRNA, complete cds
Length = 1737
Score = 68.2 bits (165), Expect = 5e-10
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = +3
Query: 66 TPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLL 125
T +G+D QRR+RT+F +F +T YPDI +RE +A L
Sbjct: 384 TTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINL 563
Query: 126 PESRIQVWFQNRRAKSRRQ 144
PESR+QVWF+NRRAK R+Q
Sbjct: 564 PESRVQVWFKNRRAKCRQQ 620
>ref|NM_009116.1| Mus musculus paired related homeobox 2 (Prrx2), mRNA
Length = 1221
Score = 68.2 bits (165), Expect = 5e-10
Identities = 45/116 (38%), Positives = 58/116 (49%)
Frame = +3
Query: 28 QLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXXXXXXXXXQR 87
++ A R A+G + P ++R AA + P+ SS T P D QR
Sbjct: 282 EVAAAGRRAAGPVSGPAEARVGAARE--PSGGSSGTEAAPQDGDCPSPGRGTKRKKK-QR 452
Query: 88 RKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRR 143
R RT+F VF +T YPD +RE LA L E+R+QVWFQNRRAK RR
Sbjct: 453 RNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRR 620
>emb|X52875.1|MMHOMEOS8 Mouse homeobox gene Prx2 mRNA
Length = 1221
Score = 68.2 bits (165), Expect = 5e-10
Identities = 45/116 (38%), Positives = 58/116 (49%)
Frame = +3
Query: 28 QLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXXXXXXXXXQR 87
++ A R A+G + P ++R AA + P+ SS T P D QR
Sbjct: 282 EVAAAGRRAAGPVSGPAEARVGAARE--PSGGSSGTEAAPQDGDCPSPGRGTKRKKK-QR 452
Query: 88 RKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRR 143
R RT+F VF +T YPD +RE LA L E+R+QVWFQNRRAK RR
Sbjct: 453 RNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRR 620
>dbj|AB066290.1|AB066290 Leucopsarion petersii otx3 gene for transcriptional factor,
complete cds
Length = 1760
Score = 67.8 bits (164), Expect = 7e-10
Identities = 47/119 (39%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSR--R 143
QRR+RT+F +F +T YPDI +RE +A LPESR+ VWF+NRRAK R +
Sbjct: 404 QRRERTTFTRTQLDILESLFAKTRYPDIFMREEVALKINLPESRVXVWFKNRRAKCRQQQ 583
Query: 144 QSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQS 202
QS S P S+ G T KP L +A S +GGG T S S
Sbjct: 584 QSSNSANPNSASNG-------NNTNTSKAKP-LKKKASPIRESSGSESGGGHFTPASTS 736
>ref|XM_060436.2| Homo sapiens similar to dJ1109J22.1 (novel homeobox domain protein)
(LOC127343), mRNA
Length = 1134
Score = 67.8 bits (164), Expect = 7e-10
Identities = 31/59 (52%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F F++T YPD+ +RERLA T LPE+R+QVWF+NRRAK R++
Sbjct: 196 QRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKK 372
>gb|AF421858.1| Mus musculus paired-like homeobox protein DMBX1 (Dmbx1) mRNA,
complete cds; alternatively spliced
Length = 1131
Score = 67.8 bits (164), Expect = 7e-10
Identities = 31/59 (52%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F F++T YPD+ +RERLA T LPE+R+QVWF+NRRAK R++
Sbjct: 196 QRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKK 372
>ref|NM_131215.1| Danio rerio orthodenticle homolog 3 (otx3), mRNA
Length = 1251
Score = 67.8 bits (164), Expect = 7e-10
Identities = 45/125 (36%), Positives = 64/125 (51%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 346 QRRERTTFTRTQLDILESLFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 525
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFET 205
+S +S+ P+P E+ P H P+++ +S S S
Sbjct: 526 QQS--STNSKIRPAKKKPSPSRES-------PGSESSGHFTPPAVSSSS-SSSSSSSGSN 675
Query: 206 YSSLS 210
S+LS
Sbjct: 676 PSALS 690
>dbj|D26174.1|ZEFOTX3 Zebrafish otx3 mRNA for otx homeoprotein, complete cds
Length = 1251
Score = 67.8 bits (164), Expect = 7e-10
Identities = 45/125 (36%), Positives = 64/125 (51%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 346 QRRERTTFTRTQLDILESLFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 525
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFET 205
+S +S+ P+P E+ P H P+++ +S S S
Sbjct: 526 QQS--STNSKIRPAKKKPSPSRES-------PGSESSGHFTPPAVSSSS-SSSSSSSGSN 675
Query: 206 YSSLS 210
S+LS
Sbjct: 676 PSALS 690
>gb|AF461039.1|AF461039 Mus musculus paired-type homeobox Atx mRNA, partial cds
Length = 850
Score = 67.8 bits (164), Expect = 7e-10
Identities = 31/59 (52%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F F++T YPD+ +RERLA T LPE+R+QVWF+NRRAK R++
Sbjct: 214 QRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKK 390
>ref|NM_130865.1| Mus musculus diencephalon/mesencephalon-expressed brain homeobox 1
(Dmbx1), mRNA
Length = 1146
Score = 67.8 bits (164), Expect = 7e-10
Identities = 31/59 (52%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F F++T YPD+ +RERLA T LPE+R+QVWF+NRRAK R++
Sbjct: 211 QRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKK 387
>gb|AF463513.1|AF463513 Mus musculus cerebellar-diencephalic-mesencephalic homeobox protein
(Cdmx) mRNA, complete cds
Length = 1146
Score = 67.8 bits (164), Expect = 7e-10
Identities = 31/59 (52%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F F++T YPD+ +RERLA T LPE+R+QVWF+NRRAK R++
Sbjct: 211 QRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKK 387
>gb|AF421857.1| Mus musculus paired-like homeobox protein DMBX1 (Dmbx1) mRNA,
complete cds; alternatively spliced
Length = 1146
Score = 67.8 bits (164), Expect = 7e-10
Identities = 31/59 (52%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F F++T YPD+ +RERLA T LPE+R+QVWF+NRRAK R++
Sbjct: 211 QRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKK 387
>gb|AY040536.1| Schistocerca americana pairberry 2 transcription factor (pby2)
mRNA, partial cds
Length = 1156
Score = 65.1 bits (157), Expect(2) = 8e-10
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F++T YPD++ RE LA T L E+RIQVWF NRRA+ R+
Sbjct: 401 QRRSRTTFSGDQLETLERAFQRTQYPDVYTREELARRTGLSEARIQVWFSNRRARWRKHC 580
Query: 146 GKSFQ 150
G S Q
Sbjct: 581 GASQQ 595
Score = 22.3 bits (46), Expect(2) = 8e-10
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 34 RPASGLPAAPHDSRAPAATQCFPNRDSSPTAQT 66
R P PH R A P +S+PT +T
Sbjct: 225 RKVCATPILPHRHRPLAGCCGVPEENSTPTRRT 323
>ref|NM_131250.1| Danio rerio orthodenticle homolog 1 (otx1), mRNA
Length = 2083
Score = 67.4 bits (163), Expect = 9e-10
Identities = 44/126 (34%), Positives = 65/126 (50%), Gaps = 2/126 (1%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSR--R 143
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R +
Sbjct: 155 QRRERTTFTRSQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 334
Query: 144 QSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSF 203
QSG S + +++ + G+E+ + + + S T +S S S
Sbjct: 335 QSGSSTKTRPAKKKSSPTRESTGSESSGQFTPPAVSSAGSSSSSSSSTNNTGISSTSTSI 514
Query: 204 ETYSSL 209
T SS+
Sbjct: 515 STVSSI 532
>gb|U14591.1|DRU14591 Danio rerio orthodenticle-related protein 1 (zOtx1) mRNA, complete
cds
Length = 2083
Score = 67.4 bits (163), Expect = 9e-10
Identities = 44/126 (34%), Positives = 65/126 (50%), Gaps = 2/126 (1%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSR--R 143
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R +
Sbjct: 155 QRRERTTFTRSQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 334
Query: 144 QSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSF 203
QSG S + +++ + G+E+ + + + S T +S S S
Sbjct: 335 QSGSSTKTRPAKKKSSPTRESTGSESSGQFTPPAVSSAGSSSSSSSSTNNTGISSTSTSI 514
Query: 204 ETYSSL 209
T SS+
Sbjct: 515 STVSSI 532
>gb|AF165886.1|AF165886 Branchiostoma floridae paired-box transcription factor (Pax3/7)
mRNA, complete cds
Length = 1913
Score = 67.4 bits (163), Expect = 9e-10
Identities = 44/112 (39%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q
Sbjct: 703 QRRSRTTFTPEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQQ 882
Query: 146 G----KSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVN-----HVPDP 188
G SF PL PA GT P+ A+ H P P
Sbjct: 883 GAQQIPSFMPLG------YPAPAAGTPTYMPVPEPAYPANAQDSATLHRPQP 1020
>dbj|D26172.1|ZEFOTX1 Zebrafish otx1 mRNA for otx homeoprotein, complete cds
Length = 1629
Score = 67.4 bits (163), Expect = 9e-10
Identities = 44/126 (34%), Positives = 65/126 (50%), Gaps = 2/126 (1%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSR--R 143
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R +
Sbjct: 527 QRRERTTFTRSQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 706
Query: 144 QSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSF 203
QSG S + +++ + G+E+ + + + S T +S S S
Sbjct: 707 QSGSSTKTRPAKKKSSPTRESTGSESSGQFTPPAVSSAGSSSSSSSSTNNTGISSTSTSI 886
Query: 204 ETYSSL 209
T SS+
Sbjct: 887 STVSSI 904
>ref|NM_000554.1| Homo sapiens cone-rod homeobox (CRX), mRNA
Length = 900
Score = 67.4 bits (163), Expect = 9e-10
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 115 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR 294
Query: 146 GKSFQPLSSRRGVFLHCPA---PGTEARCLKPQLPLEADVNHVPDPSMTG-GGVCTSGSQ 201
+ Q G PA GT R P ++ P + G G T+
Sbjct: 295 QQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVA 474
Query: 202 SFETYSSLSE 211
+ +S SE
Sbjct: 475 TVSIWSPASE 504
>gb|AF024711.1|AF024711 Homo sapiens cone rod homeobox protein (CRX) gene, complete cds
Length = 1445
Score = 67.4 bits (163), Expect = 9e-10
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 150 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR 329
Query: 146 GKSFQPLSSRRGVFLHCPA---PGTEARCLKPQLPLEADVNHVPDPSMTG-GGVCTSGSQ 201
+ Q G PA GT R P ++ P + G G T+
Sbjct: 330 QQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVA 509
Query: 202 SFETYSSLSE 211
+ +S SE
Sbjct: 510 TVSIWSPASE 539
>gb|BC016664.1|BC016664 Homo sapiens, cone-rod homeobox, clone MGC:9387 IMAGE:3869862,
mRNA, complete cds
Length = 2376
Score = 67.4 bits (163), Expect = 9e-10
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 254 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR 433
Query: 146 GKSFQPLSSRRGVFLHCPA---PGTEARCLKPQLPLEADVNHVPDPSMTG-GGVCTSGSQ 201
+ Q G PA GT R P ++ P + G G T+
Sbjct: 434 QQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVA 613
Query: 202 SFETYSSLSE 211
+ +S SE
Sbjct: 614 TVSIWSPASE 643
>dbj|AB057732.1|AB057732 Ciona savignyi Cs-OTX mRNA, complete cds
Length = 2393
Score = 67.0 bits (162), Expect = 1e-09
Identities = 34/72 (47%), Positives = 44/72 (60%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 353 QRRERTTFTRAQLDILEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQV 532
Query: 146 GKSFQPLSSRRG 157
+ Q S G
Sbjct: 533 QQQQQKQKSGSG 568
>gb|BC016502.1|BC016502 Mus musculus, cone-rod homeobox containing gene, clone MGC:25283
IMAGE:4527863, mRNA, complete cds
Length = 2845
Score = 67.0 bits (162), Expect = 1e-09
Identities = 44/122 (36%), Positives = 59/122 (48%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 202 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR 381
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFET 205
+ Q P T+AR P + P PS VCT ++
Sbjct: 382 QQQKQQQQP--------PGAQTKAR------PAKRKAGTSPRPST---DVCTDPLGISDS 510
Query: 206 YS 207
YS
Sbjct: 511 YS 516
>ref|NM_021855.1| Rattus norvegicus cone-rod homeobox protein (Crx), mRNA
Length = 900
Score = 67.0 bits (162), Expect = 1e-09
Identities = 43/122 (35%), Positives = 59/122 (48%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 115 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR 294
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFET 205
+ Q PG +A+ P + P PS VCT ++
Sbjct: 295 QQQKQQQQ----------PPGVQAKA----RPAKRKAGTSPRPST---DVCTDPLGISDS 423
Query: 206 YS 207
YS
Sbjct: 424 YS 429
>gb|AF135838.1|AF135838 Rattus norvegicus homeodomain protein CRX (Crx) mRNA, complete cds
Length = 900
Score = 67.0 bits (162), Expect = 1e-09
Identities = 43/122 (35%), Positives = 59/122 (48%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 115 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR 294
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFET 205
+ Q PG +A+ P + P PS VCT ++
Sbjct: 295 QQQKQQQQ----------PPGVQAKA----RPAKRKAGTSPRPST---DVCTDPLGISDS 423
Query: 206 YS 207
YS
Sbjct: 424 YS 429
>dbj|AB021129.1|AB021129 Rattus norvegicus Crx mRNA for cone-rod homeobox protein, complete
cds
Length = 900
Score = 67.0 bits (162), Expect = 1e-09
Identities = 43/122 (35%), Positives = 59/122 (48%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 115 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR 294
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFET 205
+ Q PG +A+ P + P PS VCT ++
Sbjct: 295 QQQKQQQQ----------PPGVQAKA----RPAKRKAGTSPRPST---DVCTDPLGISDS 423
Query: 206 YS 207
YS
Sbjct: 424 YS 429
>gb|AF305499.1|AF305499 Ciona intestinalis Otx mRNA, complete cds
Length = 1692
Score = 67.0 bits (162), Expect = 1e-09
Identities = 34/72 (47%), Positives = 44/72 (60%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 363 QRRERTTFTRAQLDILEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQV 542
Query: 146 GKSFQPLSSRRG 157
+ Q S G
Sbjct: 543 QQQQQKQKSGSG 578
>ref|NM_007770.1| Mus musculus cone-rod homeobox containing gene (Crx), mRNA
Length = 1594
Score = 67.0 bits (162), Expect = 1e-09
Identities = 44/122 (36%), Positives = 59/122 (48%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 241 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR 420
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFET 205
+ Q P T+AR P + P PS VCT ++
Sbjct: 421 QQQKQQQQP--------PGAQTKAR------PAKRKAGTSPRPST---DVCTDPLGISDS 549
Query: 206 YS 207
YS
Sbjct: 550 YS 555
>gb|U77615.1|MMU77615 Mus musculus homeodomain protein (crx) mRNA, complete cds
Length = 1594
Score = 67.0 bits (162), Expect = 1e-09
Identities = 44/122 (36%), Positives = 59/122 (48%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 241 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR 420
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFET 205
+ Q P T+AR P + P PS VCT ++
Sbjct: 421 QQQKQQQQP--------PGAQTKAR------PAKRKAGTSPRPST---DVCTDPLGISDS 549
Query: 206 YS 207
YS
Sbjct: 550 YS 555
>dbj|AB066289.1|AB066289 Leucopsarion petersii otx1 gene for transcriptional factor,
complete cds
Length = 1542
Score = 66.6 bits (161), Expect = 1e-09
Identities = 34/65 (52%), Positives = 43/65 (65%), Gaps = 2/65 (3%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSR--R 143
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R +
Sbjct: 221 QRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 400
Query: 144 QSGKS 148
QSG S
Sbjct: 401 QSGSS 415
>gb|AF251033.1|AF251033 Homo sapiens homeodomain protein RINX, isoform L1 (VSX1) mRNA,
complete cds, alternatively spliced
Length = 1956
Score = 66.6 bits (161), Expect = 1e-09
Identities = 44/116 (37%), Positives = 52/116 (43%), Gaps = 1/116 (0%)
Frame = +3
Query: 30 LPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPA-GLDXXXXXXXXXXXXXXQRR 88
LP P P AP SR P A DS T+ + D +RR
Sbjct: 360 LPPRGPEPAAPLAP--SRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRR 533
Query: 89 KRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
RT F F + YPD++ RE LA T LPE RIQVWFQNRRAK R++
Sbjct: 534 HRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKR 701
>gb|BC007621.1|BC007621 Homo sapiens, Similar to Orthodenticle (Drosophila) homolog 1,
clone MGC:15736 IMAGE:3355563, mRNA, complete cds
Length = 2155
Score = 66.6 bits (161), Expect = 1e-09
Identities = 34/74 (45%), Positives = 45/74 (59%), Gaps = 4/74 (5%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ- 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 332 QRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 511
Query: 145 ---SGKSFQPLSSR 155
SG +P +
Sbjct: 512 QSGSGTKSRPAKKK 553
>ref|NM_014588.2| Homo sapiens visual system homeobox 1 homolog, CHX10-like
(zebrafish) (VSX1), mRNA
Length = 1433
Score = 66.6 bits (161), Expect = 1e-09
Identities = 44/116 (37%), Positives = 52/116 (43%), Gaps = 1/116 (0%)
Frame = +1
Query: 30 LPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPA-GLDXXXXXXXXXXXXXXQRR 88
LP P P AP SR P A DS T+ + D +RR
Sbjct: 598 LPPRGPEPAAPLAP--SRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRR 771
Query: 89 KRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
RT F F + YPD++ RE LA T LPE RIQVWFQNRRAK R++
Sbjct: 772 HRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKR 939
>gb|AF176797.2|AF176797 Homo sapiens transcription factor VSX1 (VSX1) mRNA, complete cds
Length = 1433
Score = 66.6 bits (161), Expect = 1e-09
Identities = 44/116 (37%), Positives = 52/116 (43%), Gaps = 1/116 (0%)
Frame = +1
Query: 30 LPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPA-GLDXXXXXXXXXXXXXXQRR 88
LP P P AP SR P A DS T+ + D +RR
Sbjct: 598 LPPRGPEPAAPLAP--SRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRR 771
Query: 89 KRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
RT F F + YPD++ RE LA T LPE RIQVWFQNRRAK R++
Sbjct: 772 HRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKR 939
>ref|XM_049268.1| Homo sapiens similar to HOMEOBOX PROTEIN OTX1 (LOC93105), mRNA
Length = 2138
Score = 66.6 bits (161), Expect = 1e-09
Identities = 34/74 (45%), Positives = 45/74 (59%), Gaps = 4/74 (5%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ- 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 332 QRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 511
Query: 145 ---SGKSFQPLSSR 155
SG +P +
Sbjct: 512 QSGSGTKSRPAKKK 553
>emb|AJ223627.1|TCAJ3627 Tribolium castaneum mRNA for orthodenticle-1 protein
Length = 1959
Score = 66.6 bits (161), Expect = 1e-09
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 503 QRRERTTFTRAQLDLLEGLFAKTRYPDIFMREEVAVKINLPESRVQVWFKNRRAKCRQQL 682
Query: 146 GKSFQPLSSR 155
+ +SR
Sbjct: 683 QQQQNKSASR 712
>gb|AF079561.1|AF079561 Xenopus laevis homeobox protein BIX3 (Bix3) mRNA, complete cds
Length = 1445
Score = 66.6 bits (161), Expect = 1e-09
Identities = 33/62 (53%), Positives = 39/62 (62%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RRKRT + FR MYPDIH RE +A L ESRIQVWFQNRR+K++RQ
Sbjct: 317 RRKRTVYSPSDLARLEQYFRTNMYPDIHQREEMARQMGLLESRIQVWFQNRRSKAKRQGS 496
Query: 147 KS 148
+S
Sbjct: 497 RS 502
>dbj|AB061768.1|AB061768 Hemicentrotus pulcherrimus HpOtxL mRNA for late type
orthodenticle-related protein, complete cds
Length = 3478
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 781 QRRERTTFTRAQLDVLETLFSRTRYPDIFMREEVAMKINLPESRVQVWFKNRRAKCRQQ 957
>ref|NM_013109.1| Rattus norvegicus Orthodenticle (Drosophila) homolog 1 (Otx1),
mRNA
Length = 1230
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 154 QRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 330
>gb|L32602.1|RATOTX1X Rattus norvegicus OTX1 mRNA, complete cds
Length = 1230
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 154 QRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 330
>dbj|D84062.1|D84062 Halocynthia roretzi mRNA for otx/orthodenticle related
homeoprotein, complete cds
Length = 2701
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 395 QRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 571
>emb|X68884.1|MMOTX2 M.musculus Otx2 mRNA
Length = 204
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 22 QRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 198
>emb|X68883.1|MMOTX1 M.musculus Otx1 mRNA
Length = 204
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 22 QRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 198
>dbj|AB028220.1|AB028220 Ptychodera flava mRNA for Pf-Otx, complete cds
Length = 3625
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 577 QRRERTTFTRAQLDVLESLFSKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 753
>gb|AF154123.1|AF154123 Bos taurus cone-rod homeobox mRNA, complete cds
Length = 989
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/59 (50%), Positives = 40/59 (66%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPD++ RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 197 QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQ 373
>dbj|AB012299.1|AB012299 Lampetra japonica mRNA for LjOtxA, complete cds
Length = 2221
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 576 QRRERTTFTRAQLDVLEALFSKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 752
>dbj|AB011526.1|AB011526 Hemicentrotus pulcherrimus early type Otx (HpOtxE) mRNA, complete
cds
Length = 3260
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 569 QRRERTTFTRAQLDVLETLFSRTRYPDIFMREEVAMKINLPESRVQVWFKNRRAKCRQQ 745
>gb|S76899.1|S76899 SpOtx=orthodenticle-related protein [Strongylocentrotus purpuratus,
mRNA, 3198 nt]
Length = 3198
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 540 QRRERTTFTRAQLDVLETLFSRTRYPDIFMREEVAMKINLPESRVQVWFKNRRAKCRQQ 716
>dbj|AB012300.1|AB012300 Lampetra japonica mRNA for LjOtxB, complete cds
Length = 1628
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 453 QRRERTTFTRAQLDILESLFSKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 629
>ref|NM_021728.1| Homo sapiens orthodenticle homolog 2 (Drosophila) (OTX2), mRNA
Length = 894
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 136 QRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 312
>emb|AJ223614.1|TRC223614 Tribolium castaneum mRNA for orthodenticle-2 protein
Length = 1708
Score = 66.2 bits (160), Expect = 2e-09
Identities = 33/68 (48%), Positives = 43/68 (62%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 427 QRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 606
Query: 146 GKSFQPLS 153
+ Q S
Sbjct: 607 KQHNQQQS 630
>gb|AF099746.1|AF099746 Petromyzon marinus Otx mRNA, complete cds
Length = 2456
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 261 QRRERTTFTRAQLDVLESLFSKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 437
>gb|AF381627.1|AF381627 Caenorhabditis elegans clone yk345e3 homeodomain protein TTX-1
mRNA, partial cds
Length = 1340
Score = 65.9 bits (159), Expect = 3e-09
Identities = 34/69 (49%), Positives = 45/69 (64%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F F +T YPDI +RE +A LPESR+QVWF+NRRAK+R+Q
Sbjct: 419 QRRERTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQVWFKNRRAKARQQK 598
Query: 146 GKSFQPLSS 154
K+ P +S
Sbjct: 599 -KTLAPSNS 622
>gb|AF381628.1|AF381628 Caenorhabditis elegans clone yk51g10 homeodomain protein TTX-1
mRNA, partial cds
Length = 1469
Score = 65.9 bits (159), Expect = 3e-09
Identities = 34/69 (49%), Positives = 45/69 (64%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F F +T YPDI +RE +A LPESR+QVWF+NRRAK+R+Q
Sbjct: 540 QRRERTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQVWFKNRRAKARQQK 719
Query: 146 GKSFQPLSS 154
K+ P +S
Sbjct: 720 -KTLAPSNS 743
>dbj|AB041043.1|AB041043 Stichopus japonicus Sj-Otx mRNA for orthodenticle, complete cds
Length = 1438
Score = 65.9 bits (159), Expect = 3e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 650 QRRERTTFTRAQLDVLEDLFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 826
>ref|NM_131227.1| Danio rerio retinal homeobox gene 3 (rx3), mRNA
Length = 1322
Score = 65.9 bits (159), Expect = 3e-09
Identities = 38/93 (40%), Positives = 47/93 (49%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RR RT+F F ++ YPD++ RE LA LPE R+QVWFQNRRAK RRQ
Sbjct: 332 RRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 511
Query: 147 KSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLE 179
+ + L P G + L LPLE
Sbjct: 512 LEVSSIKLQESSMLSIPRSGPLS--LGSGLPLE 604
>gb|AF001909.1|AF001909 Danio rerio retinal homeobox protein (Rx3) mRNA, complete cds
Length = 1322
Score = 65.9 bits (159), Expect = 3e-09
Identities = 38/93 (40%), Positives = 47/93 (49%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RR RT+F F ++ YPD++ RE LA LPE R+QVWFQNRRAK RRQ
Sbjct: 332 RRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 511
Query: 147 KSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLE 179
+ + L P G + L LPLE
Sbjct: 512 LEVSSIKLQESSMLSIPRSGPLS--LGSGLPLE 604
>ref|NM_075472.1| Caenorhabditis elegans
Length = 918
Score = 65.9 bits (159), Expect = 3e-09
Identities = 34/69 (49%), Positives = 45/69 (64%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F F +T YPDI +RE +A LPESR+QVWF+NRRAK+R+Q
Sbjct: 436 QRRERTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQVWFKNRRAKARQQK 615
Query: 146 GKSFQPLSS 154
K+ P +S
Sbjct: 616 -KTLAPSNS 639
>ref|NM_075473.1| Caenorhabditis elegans
Length = 1077
Score = 65.9 bits (159), Expect = 3e-09
Identities = 34/69 (49%), Positives = 45/69 (64%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F F +T YPDI +RE +A LPESR+QVWF+NRRAK+R+Q
Sbjct: 595 QRRERTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQVWFKNRRAKARQQK 774
Query: 146 GKSFQPLSS 154
K+ P +S
Sbjct: 775 -KTLAPSNS 798
>ref|NM_078536.1| Drosophila melanogaster ocelliless (oc), mRNA
Length = 3809
Score = 65.9 bits (159), Expect = 3e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 996 QRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 1172
>emb|X58983.1|DMOTD D.melanogaster otd gene for orthodenticle protein
Length = 3809
Score = 65.9 bits (159), Expect = 3e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F +F +T YPDI +RE +A LPESR+QVWF+NRRAK R+Q
Sbjct: 996 QRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 1172
>ref|NM_006982.1| Homo sapiens cartilage paired-class homeoprotein 1 (CART1), mRNA
Length = 1442
Score = 65.5 bits (158), Expect = 3e-09
Identities = 45/127 (35%), Positives = 69/127 (53%), Gaps = 2/127 (1%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F VF++T YPD+++RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 549 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE 728
Query: 146 --GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSF 203
G+ Q S + P T++ PQ+ N++ + +GG V TS
Sbjct: 729 RYGQIQQAKSHFAATYDISVLPRTDS---YPQIQ-----NNLWAGNASGGSVVTSCMLPR 884
Query: 204 ETYSSLS 210
+T S ++
Sbjct: 885 DTSSCMT 905
>gb|AF014368.1|AF014368 Danio rerio transcription factor PAX7C (pax7) mRNA, complete cds
Length = 2225
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 995 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 1174
Query: 146 G 146
G
Sbjct: 1175 G 1177
>gb|U31986.1|HSU31986 Human cartilage-specific homeodomain protein Cart-1 mRNA, complete
cds
Length = 1442
Score = 65.5 bits (158), Expect = 3e-09
Identities = 45/127 (35%), Positives = 69/127 (53%), Gaps = 2/127 (1%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F VF++T YPD+++RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 549 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE 728
Query: 146 --GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSF 203
G+ Q S + P T++ PQ+ N++ + +GG V TS
Sbjct: 729 RYGQIQQAKSHFAATYDISVLPRTDS---YPQIQ-----NNLWAGNASGGSVVTSCMLPR 884
Query: 204 ETYSSLS 210
+T S ++
Sbjct: 885 DTSSCMT 905
>dbj|AB061220.1|AB061220 Lampetra japonica mRNA for paired box transcription factor Pax6,
complete cds
Length = 2742
Score = 65.5 bits (158), Expect = 3e-09
Identities = 56/181 (30%), Positives = 74/181 (39%), Gaps = 11/181 (6%)
Frame = +2
Query: 5 GSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTA 64
G QQ Q GA + P +PG L P + G A HD S T+
Sbjct: 914 GQQQQQ--PGAGWGARPGWYPGAAL-PGQQGPEG--CASHDG-------------SLDTS 1039
Query: 65 QTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTL 124
+ + D +R RTSF F +T YPD+ RERLA+
Sbjct: 1040 LSNSASDDSEDAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLASKID 1219
Query: 125 LPESRIQVWFQNRRAKSRRQ-----------SGKSFQPLSSRRGVFLHCPAPGTEARCLK 173
LPE+RIQVWF NRRAK RR+ + S P++S ++ P P A +
Sbjct: 1220 LPEARIQVWFSNRRAKWRREEKLRNQRRQASNAPSHIPINSSFSATVYQPIPQPTAPGMH 1399
Query: 174 P 174
P
Sbjct: 1400 P 1402
>gb|BC010923.1|BC010923 Homo sapiens, Similar to cartilage paired-class homeoprotein 1,
clone MGC:13497 IMAGE:4278460, mRNA, complete cds
Length = 1326
Score = 65.5 bits (158), Expect = 3e-09
Identities = 45/127 (35%), Positives = 69/127 (53%), Gaps = 2/127 (1%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F VF++T YPD+++RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 404 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE 583
Query: 146 --GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSF 203
G+ Q S + P T++ PQ+ N++ + +GG V TS
Sbjct: 584 RYGQIQQAKSHFAATYDISVLPRTDS---YPQIQ-----NNLWAGNASGGSVVTSCMLPR 739
Query: 204 ETYSSLS 210
+T S ++
Sbjct: 740 DTSSCMT 760
>gb|AF169414.1|AF169414 Ambystoma mexicanum paired-box transcription factor -+ isoform
(Pax6) mRNA, partial cds
Length = 1963
Score = 65.5 bits (158), Expect = 3e-09
Identities = 47/131 (35%), Positives = 64/131 (47%), Gaps = 3/131 (2%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 625 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE-- 798
Query: 147 KSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVN---HVPDPSMTGGGVCTSGSQSF 203
+ L ++R + P+ +P+ + + + P P T TSGS
Sbjct: 799 ---EKLRNQRRQASNTPS----------HIPISSSFSTSVYQPIPQPTTPVSFTSGSMLG 939
Query: 204 ETYSSLSEDIG 214
T +SL+ G
Sbjct: 940 RTDTSLTNTYG 972
>gb|AY040535.1| Schistocerca americana pairberry 1 transcription factor (pby1)
mRNA, partial cds
Length = 2101
Score = 65.5 bits (158), Expect = 3e-09
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F++T YPD++ RE LA T L E+R+QVWF NRRA+ R+Q
Sbjct: 407 QRRSRTTFSGDQLETLERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 586
Query: 146 GKSFQPLSSRR 156
+P SRR
Sbjct: 587 NSPSRP--SRR 613
>gb|AF169412.1|AF169412 Ambystoma mexicanum paired-box transcription factor ++ isoform
(Pax6) mRNA, partial cds
Length = 2005
Score = 65.5 bits (158), Expect = 3e-09
Identities = 47/131 (35%), Positives = 64/131 (47%), Gaps = 3/131 (2%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 667 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE-- 840
Query: 147 KSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVN---HVPDPSMTGGGVCTSGSQSF 203
+ L ++R + P+ +P+ + + + P P T TSGS
Sbjct: 841 ---EKLRNQRRQASNTPS----------HIPISSSFSTSVYQPIPQPTTPVSFTSGSMLG 981
Query: 204 ETYSSLSEDIG 214
T +SL+ G
Sbjct: 982 RTDTSLTNTYG 1014
>ref|NM_002584.1| Homo sapiens paired box gene 7 (PAX7), transcript variant 1, mRNA
Length = 2272
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 1248 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 1427
Query: 146 G 146
G
Sbjct: 1428 G 1430
>emb|X96743.1|HSPAX7M H.sapiens mRNA for paired box containing transcription factor, PAX7
Length = 2272
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 1248 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 1427
Query: 146 G 146
G
Sbjct: 1428 G 1430
>dbj|D88741.1|D88741 Cynops pyrrhogaster mRNA for PAX6 LL, PAX6 SL, PAX6 LS, PAX6 SS
Length = 2417
Score = 65.5 bits (158), Expect = 3e-09
Identities = 47/131 (35%), Positives = 64/131 (47%), Gaps = 3/131 (2%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 853 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE-- 1026
Query: 147 KSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVN---HVPDPSMTGGGVCTSGSQSF 203
+ L ++R + P+ +P+ + + + P P T TSGS
Sbjct: 1027---EKLRNQRRQASNTPS----------HIPISSSFSTSVYQPIPQPTTPVSFTSGSMLG 1167
Query: 204 ETYSSLSEDIG 214
T +SL+ G
Sbjct: 1168RTDTSLTNTYG 1200
>gb|AF169413.1|AF169413 Ambystoma mexicanum paired-box transcription factor +- isoform
(Pax6) mRNA, partial cds
Length = 1854
Score = 65.5 bits (158), Expect = 3e-09
Identities = 47/131 (35%), Positives = 64/131 (47%), Gaps = 3/131 (2%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 667 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE-- 840
Query: 147 KSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVN---HVPDPSMTGGGVCTSGSQSF 203
+ L ++R + P+ +P+ + + + P P T TSGS
Sbjct: 841 ---EKLRNQRRQASNTPS----------HIPISSSFSTSVYQPIPQPTTPVSFTSGSMLG 981
Query: 204 ETYSSLSEDIG 214
T +SL+ G
Sbjct: 982 RTDTSLTNTYG 1014
>gb|AF014370.1|AF014370 Danio rerio transcription factor PAX7E (pax7) mRNA, complete cds
Length = 2403
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 995 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 1174
Query: 146 G 146
G
Sbjct: 1175 G 1177
>gb|AF254422.2|AF254422 Mus musculus paired box transcription factor PAX7 (Pax7) mRNA,
partial cds
Length = 4244
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 613 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 792
Query: 146 G 146
G
Sbjct: 793 G 795
>gb|AF169415.1|AF169415 Ambystoma mexicanum paired-box transcription factor -- isoform
(Pax6) mRNA, partial cds
Length = 1812
Score = 65.5 bits (158), Expect = 3e-09
Identities = 47/131 (35%), Positives = 64/131 (47%), Gaps = 3/131 (2%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 625 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE-- 798
Query: 147 KSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVN---HVPDPSMTGGGVCTSGSQSF 203
+ L ++R + P+ +P+ + + + P P T TSGS
Sbjct: 799 ---EKLRNQRRQASNTPS----------HIPISSSFSTSVYQPIPQPTTPVSFTSGSMLG 939
Query: 204 ETYSSLSEDIG 214
T +SL+ G
Sbjct: 940 RTDTSLTNTYG 972
>ref|NM_131304.1| Danio rerio paired box gene 6a (pax6a), mRNA
Length = 2809
Score = 65.5 bits (158), Expect = 3e-09
Identities = 53/159 (33%), Positives = 69/159 (43%), Gaps = 38/159 (23%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1218 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1397
Query: 145 ---------SGKSFQPLSSRRGVFLHCPAPG--------------------TEARCLKPQ 175
+ S P+SS ++ P P T P
Sbjct: 1398 LRNQRRQASNSSSHIPISSSFSTSVYQPIPQPTTPVSFTSGSMLGRSDTALTNTYSALPP 1577
Query: 176 LPLEADVNHVP-DPSMTGGGVC---TSGS---QSFETYS 207
+P N++P PS T C TS S +S++TY+
Sbjct: 1578 MPSFTMANNLPMQPSQTSSYSCMLPTSPSVNGRSYDTYT 1694
>emb|X63183.1|BRPAX6 B.rerio pax-6 mRNA
Length = 2809
Score = 65.5 bits (158), Expect = 3e-09
Identities = 53/159 (33%), Positives = 69/159 (43%), Gaps = 38/159 (23%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1218 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1397
Query: 145 ---------SGKSFQPLSSRRGVFLHCPAPG--------------------TEARCLKPQ 175
+ S P+SS ++ P P T P
Sbjct: 1398 LRNQRRQASNSSSHIPISSSFSTSVYQPIPQPTTPVSFTSGSMLGRSDTALTNTYSALPP 1577
Query: 176 LPLEADVNHVP-DPSMTGGGVC---TSGS---QSFETYS 207
+P N++P PS T C TS S +S++TY+
Sbjct: 1578 MPSFTMANNLPMQPSQTSSYSCMLPTSPSVNGRSYDTYT 1694
>emb|X61389.1|BRPAXZFA B.rerio mRNA for Pax[zf-a]
Length = 2738
Score = 65.5 bits (158), Expect = 3e-09
Identities = 53/159 (33%), Positives = 69/159 (43%), Gaps = 38/159 (23%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1153 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1332
Query: 145 ---------SGKSFQPLSSRRGVFLHCPAPG--------------------TEARCLKPQ 175
+ S P+SS ++ P P T P
Sbjct: 1333 LRNQRRQASNSSSHIPISSSFSTSVYQPIPQPTTPVSFTSGSMLGRSDTALTNTYSALPP 1512
Query: 176 LPLEADVNHVP-DPSMTGGGVC---TSGS---QSFETYS 207
+P N++P PS T C TS S +S++TY+
Sbjct: 1513 MPSFTMANNLPMQPSQTSSYSCMLPTSPSVNGRSYDTYT 1629
>ref|NM_013833.1| Mus musculus retina and anterior neural fold homeobox (Rax), mRNA
Length = 1681
Score = 65.5 bits (158), Expect = 3e-09
Identities = 48/128 (37%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Frame = +2
Query: 23 AHPGGQLLPAMRPASGLPAAPHDSRAPAATQ-CFPN-----RDSSPTAQTPAGLDXXXXX 76
A P PA S PAAP AT+ C+P R S + PA D
Sbjct: 482 AQPACPKAPAGGSESSPPAAPGFVPEYEATRPCYPKEQGEARPSPGLSVGPAAGDSKLSE 661
Query: 77 XXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQN 136
RR RT+F F ++ YPD++ RE LA LPE R+QVWFQN
Sbjct: 662 EEPPKKK--HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQN 835
Query: 137 RRAKSRRQ 144
RRAK RRQ
Sbjct: 836 RRAKWRRQ 859
>gb|AF001906.1|AF001906 Mus musculus retinal homeobox protein (Rx) mRNA, complete cds
Length = 1681
Score = 65.5 bits (158), Expect = 3e-09
Identities = 48/128 (37%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Frame = +2
Query: 23 AHPGGQLLPAMRPASGLPAAPHDSRAPAATQ-CFPN-----RDSSPTAQTPAGLDXXXXX 76
A P PA S PAAP AT+ C+P R S + PA D
Sbjct: 482 AQPACPKAPAGGSESSPPAAPGFVPEYEATRPCYPKEQGEARPSPGLSVGPAAGDSKLSE 661
Query: 77 XXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQN 136
RR RT+F F ++ YPD++ RE LA LPE R+QVWFQN
Sbjct: 662 EEPPKKK--HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQN 835
Query: 137 RRAKSRRQ 144
RRAK RRQ
Sbjct: 836 RRAKWRRQ 859
>gb|AF014369.1|AF014369 Danio rerio transcription factor PAX7D (pax7) mRNA, complete cds
Length = 2317
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 995 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 1174
Query: 146 G 146
G
Sbjct: 1175 G 1177
>emb|Z35141.1|HSPAX7GE H.sapiens Pax-7 gene for transcription factor
Length = 1503
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 751 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 930
Query: 146 G 146
G
Sbjct: 931 G 933
>gb|AF411465.1|AF411465 Petromyzon marinus transcription factor Pax7 mRNA, complete cds
Length = 2190
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 842 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 1021
Query: 146 G 146
G
Sbjct: 1022G 1024
>dbj|D87838.1|D87838 Gallus gallus mRNA for PAX7 protein, complete cds
Length = 2132
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 828 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 1007
Query: 146 G 146
G
Sbjct: 1008G 1010
>ref|NM_013945.1| Homo sapiens paired box gene 7 (PAX7), transcript variant 2, mRNA
Length = 2255
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 1242 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 1421
Query: 146 G 146
G
Sbjct: 1422 G 1424
>gb|U73177.1|MMU73177 Mus musculus paired-type homeobox (rax) mRNA, complete cds
Length = 1678
Score = 65.5 bits (158), Expect = 3e-09
Identities = 48/128 (37%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Frame = +1
Query: 23 AHPGGQLLPAMRPASGLPAAPHDSRAPAATQ-CFPN-----RDSSPTAQTPAGLDXXXXX 76
A P PA S PAAP AT+ C+P R S + PA D
Sbjct: 472 AQPACPKAPAGGSESSPPAAPGFVPEYEATRPCYPKEQGEARPSPGLSVGPAAGDSKLSE 651
Query: 77 XXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQN 136
RR RT+F F ++ YPD++ RE LA LPE R+QVWFQN
Sbjct: 652 EEPPKKK--HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQN 825
Query: 137 RRAKSRRQ 144
RRAK RRQ
Sbjct: 826 RRAKWRRQ 849
>ref|NM_012921.1| Rattus norvegicus Cartilage homeo protein 1 (Cart1), mRNA
Length = 1760
Score = 65.1 bits (157), Expect = 4e-09
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F VF++T YPD+++RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 854 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE 1033
Query: 146 --GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTS 198
G+ Q S + P T++ PQ+ N++ + +GG V TS
Sbjct: 1034RYGQIQQAKSHFAATYDISVLPRTDS---YPQIQ-----NNLWAGNTSGGSVVTS 1174
>gb|L14018.1|RATCART1X Rat cartilage homeoprotein 1 (Cart-1) mRNA, complete cds
Length = 1760
Score = 65.1 bits (157), Expect = 4e-09
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F VF++T YPD+++RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 854 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE 1033
Query: 146 --GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTS 198
G+ Q S + P T++ PQ+ N++ + +GG V TS
Sbjct: 1034RYGQIQQAKSHFAATYDISVLPRTDS---YPQIQ-----NNLWAGNTSGGSVVTS 1174
>ref|NM_079139.1| Drosophila melanogaster gooseberry (gsb), mRNA
Length = 1284
Score = 65.1 bits (157), Expect = 4e-09
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F +F +T YPD++ RE LA T L E+R+QVWF NRRA+ R+Q
Sbjct: 553 QRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQL 732
Query: 146 G----KSFQPLSSRRG 157
SF P S+ G
Sbjct: 733 NTQQVPSFAPTSTSFG 780
>dbj|AK025181.1|AK025181 Homo sapiens cDNA: FLJ21528 fis, clone COL05977
Length = 3403
Score = 65.1 bits (157), Expect = 4e-09
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F +F T YPD+H+R +LAA LPE+R+Q+WFQN+RAK R+Q
Sbjct: 1196 KRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQ 1372
>ref|XM_038589.1| Homo sapiens similar to Homeobox domain containing protein~data
source:InterPro, source key:IPR001356,
evidence:ISS~putative (LOC91464), mRNA
Length = 3381
Score = 65.1 bits (157), Expect = 4e-09
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F +F T YPD+H+R +LAA LPE+R+Q+WFQN+RAK R+Q
Sbjct: 1195 KRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQ 1371
>gb|AF381629.1|AF381629 Caenorhabditis elegans homeodomain protein TTX-1 mRNA, partial cds
Length = 751
Score = 64.7 bits (156), Expect = 6e-09
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR+RT+F F +T YPDI +RE +A LPESR+QVWF+NRRAK+R+Q
Sbjct: 567 QRRERTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQVWFKNRRAKARQQ 743
>gb|U15276.1|XLU15276 Xenopus laevis cartilage homeoprotein 1 precursor (Xcart1) mRNA,
complete cds
Length = 1274
Score = 64.7 bits (156), Expect = 6e-09
Identities = 30/59 (50%), Positives = 42/59 (70%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD+++RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 518 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 694
>ref|NM_023951.1| Rattus norvegicus OG9 homeobox gene (Og9x), mRNA
Length = 567
Score = 64.7 bits (156), Expect = 6e-09
Identities = 39/91 (42%), Positives = 48/91 (51%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
RRKRT+F VF YPDI RE LA +T LPE++IQVWFQNRRAK R
Sbjct: 55 RRKRTTFSVGQLLELERVFAARPYPDISTREHLAQITHLPEAKIQVWFQNRRAK--RIKD 228
Query: 147 KSFQPLSSRRGVFLHCPAPGTEARCLKPQLP 177
+ L++R + +C P T P P
Sbjct: 229 RKPGALNARLELPPNCSLPDTPQLSWDPGTP 321
>ref|NM_053678.1| Rattus norvegicus retina and anterior neural fold homeobox (Rax),
mRNA
Length = 1029
Score = 64.7 bits (156), Expect = 6e-09
Identities = 44/119 (36%), Positives = 55/119 (45%), Gaps = 5/119 (4%)
Frame = +1
Query: 31 PAMRPASGLPAAPHDSRAPAATQ-CFPNR--DSSPTAQTPAGLDXXXXXXXXXXX--XXX 85
PA S PAAP AT+ C+P ++ P+ P G
Sbjct: 229 PAGGSESSPPAAPGLVPEFEATRPCYPKEQGEARPSPGLPVGPAAGDSKLSEEEEPPKKK 408
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
RR RT+F F ++ YPD++ RE LA LPE R+QVWFQNRRAK RRQ
Sbjct: 409 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQ 585
>gb|AF135839.1|AF135839 Rattus norvegicus homeodomain protein RX (Rx) mRNA, complete cds
Length = 1029
Score = 64.7 bits (156), Expect = 6e-09
Identities = 44/119 (36%), Positives = 55/119 (45%), Gaps = 5/119 (4%)
Frame = +1
Query: 31 PAMRPASGLPAAPHDSRAPAATQ-CFPNR--DSSPTAQTPAGLDXXXXXXXXXXX--XXX 85
PA S PAAP AT+ C+P ++ P+ P G
Sbjct: 229 PAGGSESSPPAAPGLVPEFEATRPCYPKEQGEARPSPGLPVGPAAGDSKLSEEEEPPKKK 408
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
RR RT+F F ++ YPD++ RE LA LPE R+QVWFQNRRAK RRQ
Sbjct: 409 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQ 585
>gb|AF232676.1|AF232676 Sus scrofa prophet of pit-1 (Prop-1) mRNA, complete cds
Length = 1721
Score = 64.7 bits (156), Expect = 6e-09
Identities = 34/68 (50%), Positives = 40/68 (58%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F F + YPDI RE LA T L E+RIQVWFQNRRAK R+Q
Sbjct: 537 RRRHRTTFSPAQLEQLESAFGRNQYPDIWAREGLARDTGLSEARIQVWFQNRRAKQRKQE 716
Query: 146 GKSFQPLS 153
QPL+
Sbjct: 717 RSLLQPLA 740
>ref|NM_007441.1| Mus musculus aristaless 3 (Alx3), mRNA
Length = 1870
Score = 64.7 bits (156), Expect = 6e-09
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Frame = +2
Query: 12 AEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNR-DSSPTAQTPAGL 70
++ A+FP P GG P P S + A+P A + P DS A+T +
Sbjct: 440 SKAASFPQLPVDCRGG---PRDGP-SNVQASPGPCLASLSVPLSPGLPDSMELAKTKS-- 601
Query: 71 DXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRI 130
+RR RT+F VF++T YPD++ RE+LA T L E+R+
Sbjct: 602 --------------KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARV 739
Query: 131 QVWFQNRRAKSRRQ 144
QVWFQNRRAK R++
Sbjct: 740 QVWFQNRRAKWRKR 781
>gb|U96109.1|MMU96109 Mus musculus proline-rich transcription factor ALX3 (Alx3) mRNA,
complete cds
Length = 1870
Score = 64.7 bits (156), Expect = 6e-09
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Frame = +2
Query: 12 AEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNR-DSSPTAQTPAGL 70
++ A+FP P GG P P S + A+P A + P DS A+T +
Sbjct: 440 SKAASFPQLPVDCRGG---PRDGP-SNVQASPGPCLASLSVPLSPGLPDSMELAKTKS-- 601
Query: 71 DXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRI 130
+RR RT+F VF++T YPD++ RE+LA T L E+R+
Sbjct: 602 --------------KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARV 739
Query: 131 QVWFQNRRAKSRRQ 144
QVWFQNRRAK R++
Sbjct: 740 QVWFQNRRAKWRKR 781
>gb|AF160992.1|AF160992 Podocoryne carnea (jellyfish) homeodomain protein Otx (Otx) mRNA,
complete cds
Length = 850
Score = 64.7 bits (156), Expect = 6e-09
Identities = 41/120 (34%), Positives = 63/120 (52%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR+RT+F +F +T YPDI +RE A LPESR+QVWF+NRRAK RQ
Sbjct: 181 QRRERTTFTKSQLEILEDLFAKTHYPDIFMREEAARKINLPESRVQVWFKNRRAK-HRQK 357
Query: 146 GKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFET 205
K + ++++ + +E +KP A V+ P S + + GS ++++
Sbjct: 358 AKQDKEKTTKKAT---TNSTSSETSDIKP-----ASVSPAPSLSPKPKSIPSPGSPNYKS 513
>ref|NM_131641.1| Danio rerio paired box gene 6b (pax6b), mRNA
Length = 1733
Score = 64.7 bits (156), Expect = 6e-09
Identities = 52/159 (32%), Positives = 67/159 (41%), Gaps = 38/159 (23%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 948 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1127
Query: 145 ---------SGKSFQPLSS--RRGVFLHCPAPGTEARCLK------------------PQ 175
+ S P+SS V+ P P T P
Sbjct: 1128 LRNQRRQASNSSSHIPISSSFNTSVYQAIPQPTTPVSFTTGSMLGRPDTALTNTYTGLPP 1307
Query: 176 LPLEADVNHVP-DPSMTGGGVC------TSGSQSFETYS 207
+P N++P PS T C + +SF+TY+
Sbjct: 1308 MPSFTMANNLPMQPSQTSSYSCMLPSSPSVNGRSFDTYT 1424
>gb|AF061252.1|AF061252 Danio rerio Pax-family transcription factor 6.2 (pax6.2) mRNA,
complete cds
Length = 1733
Score = 64.7 bits (156), Expect = 6e-09
Identities = 52/159 (32%), Positives = 67/159 (41%), Gaps = 38/159 (23%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 948 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1127
Query: 145 ---------SGKSFQPLSS--RRGVFLHCPAPGTEARCLK------------------PQ 175
+ S P+SS V+ P P T P
Sbjct: 1128 LRNQRRQASNSSSHIPISSSFNTSVYQAIPQPTTPVSFTTGSMLGRPDTALTNTYTGLPP 1307
Query: 176 LPLEADVNHVP-DPSMTGGGVC------TSGSQSFETYS 207
+P N++P PS T C + +SF+TY+
Sbjct: 1308 MPSFTMANNLPMQPSQTSSYSCMLPSSPSVNGRSFDTYT 1424
>ref|NM_077459.1| homeobox protein (otd subfamily)
Length = 1089
Score = 64.3 bits (155), Expect = 7e-09
Identities = 32/63 (50%), Positives = 38/63 (59%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F VF +T YPD+ RE LA L E+R+QVWFQNRRAK R+Q
Sbjct: 349 QRRYRTTFSAFQLDELEKVFARTHYPDVFTREELATRVQLTEARVQVWFQNRRAKYRKQE 528
Query: 146 GKS 148
S
Sbjct: 529 RSS 537
>emb|Y07548.1|AFPAX6E24 Astyanax fasciatus mRNA for PAX-6 protein, clone epigean 2-4
Length = 2053
Score = 64.3 bits (155), Expect = 7e-09
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1181 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1360
Query: 145 ---------SGKSFQPLSSRRGVFLHCPAP 165
+ S P+SS ++ P P
Sbjct: 1361 LRNQRRQANNSTSHIPISSSFSTSVYQPIP 1450
>gb|M14941.1|DROPRD41 D.melanogaster PRD mRNA clone BSH4, homeo box region
Length = 240
Score = 64.3 bits (155), Expect = 7e-09
Identities = 30/60 (50%), Positives = 37/60 (61%)
Frame = -1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPD++ RE LA T L E+RIQVWF NRRA+ R+ S
Sbjct: 180 QRRSRTTFTAEQLEALEGAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHS 1
>emb|Y07547.1|AFPAX6C72 Astyanax fasciatus mRNA for PAX-6 protein, clone cave 7-2
Length = 2211
Score = 64.3 bits (155), Expect = 7e-09
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1339 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1518
Query: 145 ---------SGKSFQPLSSRRGVFLHCPAP 165
+ S P+SS ++ P P
Sbjct: 1519 LRNQRRQANNSTSHIPISSSFSTSVYQPIP 1608
>ref|NM_016307.2| Homo sapiens paired related homeobox protein (PRX2), mRNA
Length = 1110
Score = 64.3 bits (155), Expect = 7e-09
Identities = 41/108 (37%), Positives = 50/108 (45%)
Frame = +1
Query: 36 ASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXX 95
+SG AAP D P+ P R S+ + QRR RT+F
Sbjct: 259 SSGSEAAPQDGECPS-----PGRGSAAKRKKK------------------QRRNRTTFNS 369
Query: 96 XXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRR 143
VF +T YPD +RE LA L E+R+QVWFQNRRAK RR
Sbjct: 370 SQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRR 513
>gb|AF061970.1|AF061970 Homo sapiens paired related homeobox protein (PRX2) mRNA, complete
cds
Length = 1110
Score = 64.3 bits (155), Expect = 7e-09
Identities = 41/108 (37%), Positives = 50/108 (45%)
Frame = +1
Query: 36 ASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXX 95
+SG AAP D P+ P R S+ + QRR RT+F
Sbjct: 259 SSGSEAAPQDGECPS-----PGRGSAAKRKKK------------------QRRNRTTFNS 369
Query: 96 XXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRR 143
VF +T YPD +RE LA L E+R+QVWFQNRRAK RR
Sbjct: 370 SQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRR 513
>emb|AJ000938.1|OLJ000938 Oryzias latipes, Pax6 gene
Length = 2178
Score = 64.3 bits (155), Expect = 7e-09
Identities = 54/159 (33%), Positives = 68/159 (41%), Gaps = 38/159 (23%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1146 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1325
Query: 145 ---------SGKSFQPLSS--RRGVFLHCPAPGTEARCLK------------------PQ 175
+ S P+SS V+ P P T P
Sbjct: 1326 LRNQRRQANNSSSHIPISSSFSTSVYQAIPQPTTPVSFTSGSMLGRPDSALTNTYSALPP 1505
Query: 176 LPLEADVNHVP-DPSMTGGGVC---TS---GSQSFETYS 207
+P N++P PS T C TS +S+ETY+
Sbjct: 1506 MPSFTMANNLPMQPSQTSSYSCMLPTSPPVNGRSYETYT 1622
>emb|Y07546.1|AFPAX6C23 Astyanax fasciatus mRNA for PAX-6 protein, clone cave 2-3
Length = 2065
Score = 64.3 bits (155), Expect = 7e-09
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1193 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1372
Query: 145 ---------SGKSFQPLSSRRGVFLHCPAP 165
+ S P+SS ++ P P
Sbjct: 1373 LRNQRRQANNSTSHIPISSSFSTSVYQPIP 1462
>gb|BC014645.1|BC014645 Homo sapiens, Similar to paired related homeobox protein, clone
MGC:19843 IMAGE:4553935, mRNA, complete cds
Length = 1327
Score = 64.3 bits (155), Expect = 7e-09
Identities = 41/108 (37%), Positives = 50/108 (45%)
Frame = +3
Query: 36 ASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXX 95
+SG AAP D P+ P R S+ + QRR RT+F
Sbjct: 456 SSGSEAAPQDGECPS-----PGRGSAAKRKKK------------------QRRNRTTFNS 566
Query: 96 XXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRR 143
VF +T YPD +RE LA L E+R+QVWFQNRRAK RR
Sbjct: 567 SQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRR 710
>gb|U20792.1|MMU20792 Mus musculus Pax7 mRNA, partial cds
Length = 872
Score = 64.3 bits (155), Expect = 7e-09
Identities = 31/61 (50%), Positives = 38/61 (61%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R QVWF NRRA+ R+Q+
Sbjct: 541 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARFQVWFSNRRARWRKQA 720
Query: 146 G 146
G
Sbjct: 721 G 723
>gb|AF178671.1|AF178671 Gallus gallus homeobox protein Chx10 (chx10) mRNA, complete cds
Length = 2186
Score = 61.6 bits (148), Expect(2) = 9e-09
Identities = 30/59 (50%), Positives = 36/59 (60%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT F F + YPD++ RE LA T LPE RIQVWFQNRRAK R++
Sbjct: 507 KRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKR 683
Score = 22.3 bits (46), Expect(2) = 9e-09
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 38 GLPAAPHDSRAPAATQCFPNRDSSPTAQTP 67
G A+P +R+P +C P R +S + P
Sbjct: 304 GPEASPASTRSPPFWRCSPTRRASTCSLWP 393
>ref|XM_084033.1| Homo sapiens hypothetical protein MGC15631 (MGC15631), mRNA
Length = 2048
Score = 63.9 bits (154), Expect = 1e-08
Identities = 45/136 (33%), Positives = 55/136 (40%), Gaps = 3/136 (2%)
Frame = +2
Query: 12 AEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPA--- 68
AE P+ PG PA LP AP P+ P+ +P
Sbjct: 179 AERMPAPVEGTDFPGAGRQAWGSPALSLPVAPPAVSPPSVP--LPSHQVGAMFLSPGEGP 352
Query: 69 GLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPES 128
+ RR RT+F F + YPD++ RE LAA LPE
Sbjct: 353 ATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEV 532
Query: 129 RIQVWFQNRRAKSRRQ 144
R+QVWFQNRRAK RRQ
Sbjct: 533 RVQVWFQNRRAKWRRQ 580
>ref|NM_006492.1| Homo sapiens aristaless-like homeobox 3 (ALX3), mRNA
Length = 1800
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 457 KRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKR 633
>gb|AF008203.1|AF008203 Homo sapiens homeobox protein (Alx3) mRNA, complete cds
Length = 1800
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 457 KRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKR 633
>dbj|AB020318.1|AB020318 Gallus gallus mRNA for homeobox protein cRax/Rax2/Rx2, complete cds
Length = 1195
Score = 63.9 bits (154), Expect = 1e-08
Identities = 39/105 (37%), Positives = 47/105 (44%)
Frame = +3
Query: 40 PAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXXXXX 99
P A H R P S + + PAG RR RT+F
Sbjct: 249 PPAEHQGRFQE-----PYCPGSASPELPAGDGGDGKPSDEEQPKKKHRRNRTTFTTYQLH 413
Query: 100 XXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
F ++ YPD++ RE LA LPE R+QVWFQNRRAK RRQ
Sbjct: 414 ELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 548
>gb|U77178.1|TAU77178 Triturus alpestris paired box homeodomain protein TPAX6 (Pax6)
mRNA, partial cds
Length = 699
Score = 63.9 bits (154), Expect = 1e-08
Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSG 146
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 205 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE-- 378
Query: 147 KSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVN---HVPDPSMTGGGVCTSGSQSF 203
+ L ++R + P+ +P+ + + + P P T TSGS
Sbjct: 379 ---EELRNQRRQASNTPS----------HIPISSSFSTSVYQPIPQPTTPVSFTSGSMLG 519
Query: 204 ETYSSLSEDIG 214
+ +SL+ G
Sbjct: 520 RSDTSLTNTYG 552
>emb|X70475.1|CCPAX C. coturnix mRNA for paired box and homeobox gene
Length = 2509
Score = 63.9 bits (154), Expect = 1e-08
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 36/157 (22%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1007 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 1186
Query: 145 ---------SGKSFQPLSSRRGVFLHCPAPG---------------TEARCLKPQLPLEA 180
+ S P+SS ++ P P T P +P
Sbjct: 1187 LRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPGSMLGRTDTALTNTYSALPPMPSFT 1366
Query: 181 DVNHV----PDPSMTGGGVC---TSGS---QSFETYS 207
N++ P PS T C TS S +S++TY+
Sbjct: 1367 MANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYT 1477
>emb|X81403.1|MAALX3 M.auratus mRNA for alx3
Length = 1744
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 486 KRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKR 662
>emb|AJ298300.1|OLA298300 Oryzias latipes mRNA for Rx3 protein
Length = 1696
Score = 63.9 bits (154), Expect = 1e-08
Identities = 40/108 (37%), Positives = 48/108 (44%)
Frame = +3
Query: 37 SGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGLDXXXXXXXXXXXXXXQRRKRTSFXXX 96
SG A +AP C P+ SP D RR RT+F
Sbjct: 390 SGAVAVMQTKKAPFPDSCAPD---SP--------DRDGKLSDDETQKKKHRRNRTTFTTY 536
Query: 97 XXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
F ++ YPD++ RE LA LPE R+QVWFQNRRAK RRQ
Sbjct: 537 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQ 680
>gb|AF092538.1|AF092538 Gallus gallus paired type homeodomain protein (Alx-4) mRNA,
complete cds
Length = 1164
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 574 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 750
>ref|XM_002147.4| Homo sapiens aristaless-like homeobox 3 (ALX3), mRNA
Length = 1771
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 457 KRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKR 633
>gb|S69508.1|S69508 Pax-6=transcription factor [chickens, embryos, mRNA Partial, 912
nt]
Length = 912
Score = 63.9 bits (154), Expect = 1e-08
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 36/157 (22%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ-- 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 31 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 210
Query: 145 ---------SGKSFQPLSSRRGVFLHCPAPG---------------TEARCLKPQLPLEA 180
+ S P+SS ++ P P T P +P
Sbjct: 211 LRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPGSMLGRTDTALTNTYSALPPMPSFT 390
Query: 181 DVNHV----PDPSMTGGGVC---TSGS---QSFETYS 207
N++ P PS T C TS S +S++TY+
Sbjct: 391 MANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYT 501
>emb|AJ404888.1|HSA404888 Homo sapiens mRNA for homeodomain transcription factor ALX4
Length = 1493
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 692 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 868
>gb|BC018709.1|BC018709 Homo sapiens, hypothetical protein MGC15631, clone MGC:31769
IMAGE:4635722, mRNA, complete cds
Length = 2451
Score = 63.9 bits (154), Expect = 1e-08
Identities = 45/136 (33%), Positives = 55/136 (40%), Gaps = 3/136 (2%)
Frame = +1
Query: 12 AEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPA--- 68
AE P+ PG PA LP AP P+ P+ +P
Sbjct: 181 AEHMPAPVEGTDFPGAGRQAWGSPALSLPVAPPAVSPPSVP--LPSHQVGAMFLSPGEGP 354
Query: 69 GLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPES 128
+ RR RT+F F + YPD++ RE LAA LPE
Sbjct: 355 ATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEV 534
Query: 129 RIQVWFQNRRAKSRRQ 144
R+QVWFQNRRAK RRQ
Sbjct: 535 RVQVWFQNRRAKWRRQ 582
>gb|BC017199.1|BC017199 Homo sapiens, paired mesoderm homeobox 2b, clone MGC:1678
IMAGE:3161284, mRNA, complete cds
Length = 1506
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F VF +T YPDI+ RE LA L E+R+QVWFQNRRAK R+Q
Sbjct: 397 QRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 573
>ref|XM_030752.1| Homo sapiens aristaless-like homeobox 4 (ALX4), mRNA
Length = 1581
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 742 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 918
>ref|NM_032753.1| Homo sapiens hypothetical protein MGC15631 (MGC15631), mRNA
Length = 2066
Score = 63.9 bits (154), Expect = 1e-08
Identities = 45/136 (33%), Positives = 55/136 (40%), Gaps = 3/136 (2%)
Frame = +2
Query: 12 AEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPA--- 68
AE P+ PG PA LP AP P+ P+ +P
Sbjct: 179 AEHMPAPVEGTDFPGAGRQAWGSPALSLPVAPPAVSPPSVP--LPSHQVGAMFLSPGEGP 352
Query: 69 GLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPES 128
+ RR RT+F F + YPD++ RE LAA LPE
Sbjct: 353 ATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEV 532
Query: 129 RIQVWFQNRRAKSRRQ 144
R+QVWFQNRRAK RRQ
Sbjct: 533 RVQVWFQNRRAKWRRQ 580
>gb|BC007284.1|BC007284 Homo sapiens, Similar to retina and anterior neural fold homeobox,
clone MGC:15631 IMAGE:3344166, mRNA, complete cds
Length = 2066
Score = 63.9 bits (154), Expect = 1e-08
Identities = 45/136 (33%), Positives = 55/136 (40%), Gaps = 3/136 (2%)
Frame = +2
Query: 12 AEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPA--- 68
AE P+ PG PA LP AP P+ P+ +P
Sbjct: 179 AEHMPAPVEGTDFPGAGRQAWGSPALSLPVAPPAVSPPSVP--LPSHQVGAMFLSPGEGP 352
Query: 69 GLDXXXXXXXXXXXXXXQRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPES 128
+ RR RT+F F + YPD++ RE LAA LPE
Sbjct: 353 ATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEV 532
Query: 129 RIQVWFQNRRAKSRRQ 144
R+QVWFQNRRAK RRQ
Sbjct: 533 RVQVWFQNRRAKWRRQ 580
>gb|AF294629.1|AF294629 Homo sapiens aristaless-like 4 (ALX4) mRNA, complete cds
Length = 1583
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 744 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 920
>ref|NM_021926.1| Homo sapiens aristaless-like homeobox 4 (ALX4), mRNA
Length = 1583
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 744 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 920
>ref|NM_008888.1| Mus musculus paired mesoderm homeobox 2b (Pmx2b), mRNA
Length = 1604
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F VF +T YPDI+ RE LA L E+R+QVWFQNRRAK R+Q
Sbjct: 510 QRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 686
>emb|Y14493.1|MMPHOX2B Mus musculus mRNA for PHOX2b protein
Length = 1604
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F VF +T YPDI+ RE LA L E+R+QVWFQNRRAK R+Q
Sbjct: 510 QRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 686
>dbj|AB058691.1|AB058691 Homo sapiens mRNA for KIAA1788 protein, partial cds
Length = 5654
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 647 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 823
>ref|NM_007442.1| Mus musculus aristaless 4 (Alx4), mRNA
Length = 1770
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 799 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 975
>gb|AF001465.1|MMAF001465 Mus musculus paired-type homeodomain transcription factor (Alx4)
mRNA, complete cds
Length = 1770
Score = 63.9 bits (154), Expect = 1e-08
Identities = 30/59 (50%), Positives = 41/59 (68%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 799 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 975
>ref|XM_003368.1| Homo sapiens paired mesoderm homeobox 2b (PMX2B), mRNA
Length = 3029
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F VF +T YPDI+ RE LA L E+R+QVWFQNRRAK R+Q
Sbjct: 652 QRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 828
>ref|NM_003924.2| Homo sapiens paired mesoderm homeobox 2b (PMX2B), mRNA
Length = 3029
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F VF +T YPDI+ RE LA L E+R+QVWFQNRRAK R+Q
Sbjct: 652 QRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 828
>dbj|D82344.1|D82344 Homo sapiens mRNA for NBPhox, complete cds
Length = 3029
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F VF +T YPDI+ RE LA L E+R+QVWFQNRRAK R+Q
Sbjct: 652 QRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 828
>gb|AF000673.1|AF000673 Coturnix coturnix paired-box transcription factor protein (Pax-3)
mRNA, partial cds
Length = 3080
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 642 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 821
Query: 146 G 146
G
Sbjct: 822 G 824
>gb|S74393.1|S74393 Pax-6 [rats, small eye rSey, mRNA Partial Mutant, 1292 nt]
Length = 1292
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 353 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 526
>gb|AF154553.1|AF154553 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-1 allele, complete cds
Length = 1980
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 997 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1170
>gb|U02368.1|HSU02368 Human PAX3/forkhead transcription factor gene fusion mRNA, complete
cds
Length = 3200
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 703 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 882
Query: 146 G 146
G
Sbjct: 883 G 885
>dbj|AK014337.1|AK014337 Mus musculus 14, 17 days embryo head cDNA, RIKEN full-length
enriched library, clone:3230402M02:paired box gene 3,
full insert sequence
Length = 1891
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +3
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 744 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 923
Query: 146 G 146
G
Sbjct: 924 G 926
>gb|AF154554.1|AF154554 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-4 allele, partial cds
Length = 1207
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 711 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 884
>emb|AJ292077.1|MMU292077 Mus musculus partial mRNA for paired box protein (Pax6 gene), clone
PAX6-9Neu
Length = 1462
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 775 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 948
>gb|AF457141.1|AF457141 Mus musculus Pax6 paired-less isoform mRNA, complete cds
Length = 982
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 237 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 410
>gb|U67887.1|XLU67887 Xenopus laevis XLPAX6 (Pax6) mRNA, complete cds
Length = 1643
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 868 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1041
>gb|M77844.1|HUMOCLHMB H.sapiens oculorhombin (aniridia) mRNA, complete cds
Length = 1643
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 993 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1166
>gb|AF154557.1|AF154557 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-2 allele, complete cds
Length = 2028
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1018 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1191
>gb|BC008826.1|BC008826 Homo sapiens, paired box gene 3 (Waardenburg syndrome 1), clone
MGC:12856 IMAGE:4099446, mRNA, complete cds
Length = 2827
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 839 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 1018
Query: 146 G 146
G
Sbjct: 1019G 1021
>emb|AJ307468.1|MMU307468 Mus musculus mRNA for paired box protein (Pax-6 gene)
Length = 1469
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 782 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 955
>emb|Y19199.1|MMUY19199 Mus musculus partial Pax-6 gene for paired box protein, PAX6-7NEU
Length = 1469
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 782 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 955
>emb|Y19198.1|MMUY19198 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-6NEU
Length = 1469
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 782 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 955
>emb|Y19197.1|MMUY19197 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-5NEU
Length = 1469
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 782 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 955
>emb|Y19195.1|MMUY19195 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-3NEU
Length = 1470
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 783 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 956
>gb|L07483.1|HUMPBH3B Homo sapiens paired-box protein (PAX3) mRNA, partial exon
Length = 834
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 112 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 291
Query: 146 G 146
G
Sbjct: 292 G 294
>dbj|D87837.1|D87837 Gallus gallus mRNA for PAX6 protein, complete cds
Length = 1964
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1002 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1175
>emb|AJ223441.1|BFL223441 Branchiostoma floridae Pax6 gene (AmphiPax6), clone J2
Length = 4654
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1285 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1458
>gb|AF178854.1|AF178854 Synthetic construct Pax3-forkhead fusion protein (Pax3/FKHR) mRNA,
complete cds
Length = 2725
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 863 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 1042
Query: 146 G 146
G
Sbjct: 1043G 1045
>ref|NM_013001.1| Rattus norvegicus Paired box homeotic gene 6 (Pax6), mRNA
Length = 2550
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1011 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1184
>gb|U69644.1|RNU69644 Rattus norvegicus Pax-6 mRNA, comlete cds
Length = 2550
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1011 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1184
>gb|AF154556.1|AF154556 Xenopus laevis paired domain transcription factor variant A (Pax-6)
mRNA, Pax-6-1 allele, complete cds
Length = 2213
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1062 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1235
>emb|AJ223444.1|BFL223444 Branchiostoma floridae Pax6 gene (AmphiPax6), clone 12.2
Length = 2884
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1322 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1495
>gb|BC011953.1|BC011953 Homo sapiens, Similar to paired box gene 6 (aniridia, keratitis),
clone MGC:17209 IMAGE:3880468, mRNA, complete cds
Length = 1631
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 972 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1145
>ref|NM_000280.1| Homo sapiens paired box gene 6 (aniridia, keratitis) (PAX6), mRNA
Length = 1698
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1048 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1221
>gb|M93650.1|HUMPAX6AN Human paired box gene (PAX6) homologue, complete cds
Length = 1698
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1048 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1221
>gb|M77842.1|MUSSEYA Mus musculus oculorhombin (Sey) mRNA, complete cds
Length = 1624
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 501 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 674
>ref|NM_008936.1| Mus musculus paired like homeodomain factor 1 (Prop1), mRNA
Length = 1000
Score = 63.5 bits (153), Expect = 1e-08
Identities = 33/68 (48%), Positives = 40/68 (58%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F F + YPDI RE LA T L E+RIQVWFQNRRAK R+Q
Sbjct: 424 RRRHRTTFNPAQLEQLESAFGRNQYPDIWAREGLAQDTGLSEARIQVWFQNRRAKQRKQE 603
Query: 146 GKSFQPLS 153
QP++
Sbjct: 604 RSLLQPIA 627
>gb|U77946.1|MMU77946 Mus musculus pituitary specific homeodomain factor (Prop-1) mRNA,
complete cds
Length = 1000
Score = 63.5 bits (153), Expect = 1e-08
Identities = 33/68 (48%), Positives = 40/68 (58%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
+RR RT+F F + YPDI RE LA T L E+RIQVWFQNRRAK R+Q
Sbjct: 424 RRRHRTTFNPAQLEQLESAFGRNQYPDIWAREGLAQDTGLSEARIQVWFQNRRAKQRKQE 603
Query: 146 GKSFQPLS 153
QP++
Sbjct: 604 RSLLQPIA 627
>emb|AJ223442.1|BFL223442 Branchiostoma floridae Pax6 gene (AmphiPax6), clone 4.1
Length = 4041
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1256 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1429
>gb|U77532.1|XLU77532 Xenopus laevis Pax6 mRNA, complete cds
Length = 2487
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1203 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1376
>gb|U76386.1|XLU76386 Xenopus laevis paired-type homeodomain (Pax-6) mRNA, complete cds
Length = 2009
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1174 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1347
>gb|M14942.1|DROPRD92 D.melanogaster paired mRNA clone BSH9, homeo box region
Length = 240
Score = 63.5 bits (153), Expect = 1e-08
Identities = 29/59 (49%), Positives = 38/59 (64%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F +F +T YPD++ RE LA T L E+R+QVWF NRRA+ R+Q
Sbjct: 61 QRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQ 237
>gb|AF154555.1|AF154555 Xenopus laevis paired domain transcription factor variant A (Pax-6)
mRNA, Pax-6-2 allele, complete cds
Length = 2211
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1060 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1233
>dbj|AB002408.1|AB002408 Oryzias sp. mRNA for mdkPax-6, partial cds
Length = 638
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 250 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 423
>gb|AY047583.1| Homo sapiens paired box protein PAX6 (PAX6) mRNA, complete cds
Length = 1399
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 761 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 934
>gb|AY064175.1| Mus musculus Pax6 paired-less isoform mRNA, complete cds
Length = 1125
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +3
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 381 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 554
>gb|AF154552.1|AF154552 Xenopus laevis paired domain transcription factor variant B (Pax-6)
mRNA, Pax-6-3 allele, complete cds
Length = 1882
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 880 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1053
>ref|NM_013627.1| Mus musculus paired box gene 6 (Pax6), mRNA
Length = 2481
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 835 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1008
>emb|X63963.1|MMPAX6PBP M.musculus pax-6 mRNA for paired box protein
Length = 2481
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 835 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1008
>emb|AJ223440.1|BFL223440 Branchiostoma floridae Pax6 gene (AmphiPax6) clone 12.1
Length = 4596
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1220 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1393
>gb|BC011272.1|BC011272 Mus musculus, clone MGC:18454 IMAGE:4008490, mRNA, complete cds
Length = 2580
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1202 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1375
>ref|NM_001604.2| Homo sapiens paired box gene 6 (aniridia, keratitis) (PAX6), mRNA
Length = 1740
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 1090 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 1263
>gb|U64513.1|XLU64513 Xenopus laevis Xpax6 mRNA, complete cds
Length = 1270
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 631 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 804
>ref|NM_131277.1| Danio rerio paired box gene 3 (pax3), mRNA
Length = 2734
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 934 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 1113
Query: 146 G 146
G
Sbjct: 1114G 1116
>gb|AF443223.1|AF443223 Mus musculus PAX6 mRNA, partial cds, alternatively spliced
Length = 1058
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 571 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 744
>gb|AF014366.1|AF014366 Danio rerio transcription factor PAX3 (pax3) mRNA, complete cds
Length = 2734
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 934 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 1113
Query: 146 G 146
G
Sbjct: 1114G 1116
>ref|NM_008781.1| Mus musculus paired box gene 3 (Pax3), mRNA
Length = 2347
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 952 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 1131
Query: 146 G 146
G
Sbjct: 1132 G 1134
>emb|X59358.1|MMPAX3R Mouse Pax-3 gene for a DNA binding protein, involved in early
neurogenesis
Length = 2347
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA L E+R+QVWF NRRA+ R+Q+
Sbjct: 952 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 1131
Query: 146 G 146
G
Sbjct: 1132 G 1134
>emb|AJ327946.1|HSA327946 Homo sapiens genomic sequence surrounding NotI site, clone
HSJ-BE20C
Length = 664
Score = 63.2 bits (152), Expect = 2e-08
Identities = 35/70 (50%), Positives = 38/70 (54%)
Frame = -3
Query: 1 MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDS 60
MA A S+ LQFAEGAAFP + A H GG LLP PA+ L AP PA F RD
Sbjct: 242 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP 63
Query: 61 SPTAQTPAGL 70
P PA L
Sbjct: 62 GPAPPPPASL 33
>emb|Y19196.1|MMUY19196 Mus musculus partial Pax-6 gene for paired box protein, clone
PAX6-4NEU
Length = 1469
Score = 63.2 bits (152), Expect = 2e-08
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +2
Query: 87 RRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+R RTSF F +T YPD+ RERLAA LPE+RIQVWF NRRAK RR+
Sbjct: 782 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFPNRRAKWRRE 955
>ref|NM_079110.1| Drosophila melanogaster Putative homeodomain protein (PHDP), mRNA
Length = 663
Score = 63.2 bits (152), Expect = 2e-08
Identities = 30/59 (50%), Positives = 39/59 (65%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F +F +T YPDI+ RE +A+ L E+R+QVWFQNRRAK R+Q
Sbjct: 334 QRRIRTTFTSNQLNELEKIFLETHYPDIYTREEIASKLHLTEARVQVWFQNRRAKFRKQ 510
>gb|M14548.1|DROPRD D.melanogaster paired gene (prd) encoding a segmentation protein,
complete cds
Length = 3042
Score = 63.2 bits (152), Expect = 2e-08
Identities = 31/59 (52%), Positives = 37/59 (62%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F F +T YPDI+ RE LA T L E+RIQVWF NRRA+ R+Q
Sbjct: 1489 QRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQ 1665
>gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome 2L, region 33B-33C, BAC clone
BACR02B06, complete sequence
Length = 174314
Score = 63.2 bits (152), Expect = 2e-08
Identities = 31/59 (52%), Positives = 37/59 (62%)
Frame = -2
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F F +T YPDI+ RE LA T L E+RIQVWF NRRA+ R+Q
Sbjct: 75421 QRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQ 75245
>dbj|D84254.1|D84254 Halocynthia roretzi mRNA for Pax-37, complete cds
Length = 2573
Score = 63.2 bits (152), Expect = 2e-08
Identities = 33/78 (42%), Positives = 40/78 (50%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F F +T YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q
Sbjct: 679 QRRSRTTFSADQLEELERCFERTHYPDIYTREELAQRTRLTEARVQVWFSNRRARWRKQM 858
Query: 146 GKSFQPLSSRRGVFLHCP 163
P H P
Sbjct: 859 AAQQLPAIHPHHTHPHLP 912
>gb|AE003634.1|AE003634 Drosophila melanogaster genomic scaffold 142000013386055 section 27 of
63, complete sequence
Length = 264752
Score = 63.2 bits (152), Expect = 2e-08
Identities = 31/59 (52%), Positives = 37/59 (62%)
Frame = -1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F F +T YPDI+ RE LA T L E+RIQVWF NRRA+ R+Q
Sbjct: 259589 QRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQ 259413
>dbj|AK018615.1|AK018615 Mus musculus adult male cecum cDNA, RIKEN full-length enriched
library, clone:9130012O13:Homeobox domain containing
protein, full insert sequence
Length = 1793
Score = 63.2 bits (152), Expect = 2e-08
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +1
Query: 86 QRRKRTSFXXXXXXXXXXVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+RR RT+F +F T YPDIH+R +LA+ LPE+R+Q+WFQN+RAK R+Q
Sbjct: 700 KRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQNQRAKWRKQ 876
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 23, 2002 12:49 AM
Number of letters in database: 626,783,262
Number of sequences in database: 1,168,056
Lambda K H
0.318 0.132 0.00
Gapped
Lambda K H
0.267 0.0410 7.29e-304
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,323,431,990
Number of Sequences: 1168056
Number of extensions: 22254615
Number of successful extensions: 169032
Number of sequences better than 10.0: 2929
Number of HSP's better than 10.0 without gapping: 86260
Number of HSP's successfully gapped in prelim test: 9621
Number of HSP's that attempted gapping in prelim test: 46232
Number of HSP's gapped (non-prelim): 142722
length of query: 231
length of database: 1,640,583,519
effective HSP length: 130
effective length of query: 101
effective length of database: 1,488,736,239
effective search space: 150362360139
effective search space used: 150362360139
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)